CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM142675

Assay name SF002_ATH1_A6-Fille-WT+dex

GSE experiment GSE6155: Nutritional control of plant development: molecular analysis of the NO3- response pathway in Arabidopsis roots.

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
269.7 100.0 122.8 At3g26460 822251 major latex protein-related / MLP-related F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P O.I. C.G. H.G.
143.6 99.9 76.3 At2g47200 819333 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
142.6 99.9 134.9 At5g38910 833883 germin-like protein, putative F:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PFOB O.I. C.G. H.G.
60.7 99.8 65.4 At3g48920 824053 AtMYB45 (myb domain protein 45) Member of the R2R3 factor gene family. O.I. C.G. H.G.
58.6 99.8 224.0 At2g16005 816096 MD-2-related lipid recognition domain-containing protein / ML domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PFO O.I. C.G. H.G.
57.9 99.8 84.6 At4g28940 829015 catalytic F:catalytic activity;P:nucleoside metabolic process;C:endomembrane system;BPO O.I. C.G. H.G.
57.7 99.8 91.0 At3g28550 822485 proline-rich extensin-like family protein F:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MPFBOVA O.I. C.G. H.G.
55.1 99.8 91.7 At1g14120 837971 2-oxoglutarate-dependent dioxygenase, putative F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity;P:biological_process unknown;C:cellular_component unknown;POBFM O.I. C.G. H.G.
53.4 99.8 62.5 At1g26390 839181 FAD-binding domain-containing protein F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;FBPOAM O.I. C.G. H.G.
52.0 99.8 203.9 At2g18370 816352 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein Predicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15. O.I. C.G. H.G.
50.8 99.8 151.1 At4g11190 826721 disease resistance-responsive family protein / dirigent family protein F:molecular_function unknown;P:lignan biosynthetic process, defense response;C:endomembrane system;P O.I. C.G. H.G.
49.4 99.8 29.5 At4g31970 829327 CYP82C2 member of CYP82C O.I. C.G. H.G.
46.8 99.8 243.4 At3g09270 820083 ATGSTU8 (GLUTATHIONE S-TRANSFERASE TAU 8) Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). O.I. C.G. H.G.
44.9 99.8 108.0 At2g44370 819044 DC1 domain-containing protein F:unknown;P:unknown;C:unknown;POMF O.I. C.G. H.G.
43.2 99.8 188.1 At3g58550 825024 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:anchored to membrane;P O.I. C.G. H.G.
38.8 99.8 27.6 At3g46700 823823 UDP-glycosyltransferase/ transferase, transferring glycosyl groups F:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:unknown;PMBVOF O.I. C.G. H.G.
38.5 99.8 46.3 At5g02420 831836 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
38.0 99.8 87.5 At2g29490 817498 ATGSTU1 (GLUTATHIONE S-TRANSFERASE TAU 1) Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). O.I. C.G. H.G.
37.9 99.8 77.9 At2g30750 817626 CYP71A12 (cytochrome P450, family 71, subfamily A, polypeptide 12) putative cytochrome P450 O.I. C.G. H.G.
36.7 99.7 56.3 At5g63590 836478 FLS3 (FLAVONOL SYNTHASE 3) F:flavonol synthase activity;P:response to light stimulus, response to sucrose stimulus, flavonoid biosynthetic process;C:cellular_component unknown;POBFM O.I. C.G. H.G.
36.0 99.7 91.6 At1g21100 838706 O-methyltransferase, putative F:methyltransferase activity, O-methyltransferase activity, protein dimerization activity;P:unknown;C:cytosol;PBFOM O.I. C.G. H.G.
35.9 99.7 51.6 At2g35380 818105 peroxidase 20 (PER20) (P20) F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOB O.I. C.G. H.G.
35.7 99.7 110.3 At3g12700 820452 aspartyl protease family protein F:aspartic-type endopeptidase activity;P:proteolysis;C:cellular_component unknown;PMFO O.I. C.G. H.G.
33.4 99.7 49.1 At4g37010 829855 caltractin, putative / centrin, putative F:calcium ion binding;P:biological_process unknown;C:unknown;MFPOB O.I. C.G. H.G.
31.8 99.7 144.4 At5g13750 831220 ZIFL1 (ZINC INDUCED FACILITATOR-like 1) F:tetracycline:hydrogen antiporter activity;P:response to antibiotic, tetracycline transport;C:integral to membrane;BFOMAP O.I. C.G. H.G.
30.5 99.7 161.6 At1g18980 838479 germin-like protein, putative F:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PBFO O.I. C.G. H.G.
29.8 99.7 209.9 At1g17170 838288 ATGSTU24 (GLUTATHIONE S-TRANSFERASE TAU 24) Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). O.I. C.G. H.G.
29.7 99.7 32.7 At1g68880 843221 AtbZIP (Arabidopsis thaliana basic leucine-zipper 8) F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus, chloroplast;PMFO O.I. C.G. H.G.
29.6 99.7 41.0 At1g68450 843174 VQ motif-containing protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
29.0 99.7 160.7 At1g14960 838061 major latex protein-related / MLP-related F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P O.I. C.G. H.G.
28.9 99.7 115.6 At3g57010 824868 strictosidine synthase family protein F:strictosidine synthase activity;P:alkaloid biosynthetic process, biosynthetic process;C:endoplasmic reticulum;PMBOA O.I. C.G. H.G.
28.9 99.7 16.1 At1g11450 837687 nodulin MtN21 family protein F:unknown;P:unknown;C:endomembrane system, membrane;PBOAM O.I. C.G. H.G.
28.8 99.7 75.0 At2g15120 3768033 - F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
28.8 99.7 28.2 At5g49350 3771473 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MBOPFVA O.I. C.G. H.G.
27.5 99.7 103.8 At1g56320 842085 unknown protein F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;P O.I. C.G. H.G.
27.4 99.7 41.0 At5g22410 832302 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFO O.I. C.G. H.G.
26.9 99.7 80.5 At5g10140 830878 FLC (FLOWERING LOCUS C) MADS-box protein encoded by FLOWERING LOCUS C - transcription factor that functions as a repressor of floral transition and contributes to temperature compensation of the circadian clock. Expression is downregulated during cold treatment. Vernalization, FRI and the autonomous pathway all influence the state of FLC chromatin. Both maternal and paternal alleles are reset by vernalization, but their earliest activation differs in timing and location. Histone H3 trimethylation at lysine 4 and histone acetylation are associated with active FLC expression, whereas histone deacetylation and histone H3 dimethylation at lysines 9 and 27 are involved in FLC repression. Expression is also repressed by two small RNAs (30- and 24-nt) complementary to the FLC sense strand 3� to the polyA site. The small RNAs are most likely derived from an antisense transcript of FLC. Interacts with SOC1 and FT chromatin in vivo. Member of a protein complex. O.I. C.G. H.G.
26.4 99.7 41.4 At4g35150 829667 O-methyltransferase family 2 protein F:methyltransferase activity, O-methyltransferase activity, protein dimerization activity;P:unknown;C:cytosol;PBFMO O.I. C.G. H.G.
26.3 99.7 55.2 At2g44940 819103 AP2 domain-containing transcription factor TINY, putative encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. O.I. C.G. H.G.
26.3 99.7 37.2 At1g18870 838468 ICS2 (ISOCHORISMATE SYNTHASE 2) Encodes a protein with isochorismate synthase activity involved in phylloquinone biosynthesis. Mutant studies of this gene's function suggest that its function is redundant with that of ICS1 (AT1G7410). O.I. C.G. H.G.
26.3 99.7 30.6 At4g33730 829515 pathogenesis-related protein, putative F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFOB O.I. C.G. H.G.
25.9 99.7 203.7 At1g78340 844169 ATGSTU22 (GLUTATHIONE S-TRANSFERASE TAU 22) Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). O.I. C.G. H.G.
25.2 99.6 98.1 At4g29270 829048 acid phosphatase class B family protein F:acid phosphatase activity;P:biological_process unknown;C:endomembrane system;PBO O.I. C.G. H.G.
24.6 99.6 49.6 At1g34510 840353 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFO O.I. C.G. H.G.
24.4 99.6 31.4 At1g35260 840415 MLP165 (MLP-LIKE PROTEIN 165) F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P O.I. C.G. H.G.
24.3 99.6 26.1 At1g52820 841715 2-oxoglutarate-dependent dioxygenase, putative F:oxidoreductase activity;P:unknown;C:unknown;POBFM O.I. C.G. H.G.
24.3 99.6 18.5 At4g00670 828034 DNA binding F:DNA binding;P:unknown;C:unknown;POFM O.I. C.G. H.G.
24.2 99.6 21.3 At1g20490 838637 AMP-dependent synthetase and ligase family protein F:4-coumarate-CoA ligase activity;P:phenylpropanoid metabolic process, metabolic process;C:unknown;BOMFPAV O.I. C.G. H.G.
24.1 99.6 23.4 At1g24430 839059 transferase/ transferase, transferring acyl groups other than amino-acyl groups F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:N-terminal protein myristoylation;C:cellular_component unknown;PF O.I. C.G. H.G.
23.9 99.6 152.0 At5g59520 836071 ZIP2 encodes a metal ion transporter whose expression is regulated by copper. O.I. C.G. H.G.
23.9 99.6 112.1 At5g09480 830807 hydroxyproline-rich glycoprotein family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OBMFPVA O.I. C.G. H.G.
23.9 99.6 47.4 At5g07870 830680 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFO O.I. C.G. H.G.
23.7 99.6 108.1 At1g30700 839950 FAD-binding domain-containing protein F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;BFPOA O.I. C.G. H.G.
23.5 99.6 80.2 At2g46750 819288 FAD-binding domain-containing protein F:oxidoreductase activity, D-arabinono-1,4-lactone oxidase activity, FAD binding, catalytic activity;P:unknown;C:membrane;BOPFMA O.I. C.G. H.G.
23.4 99.6 16.8 At1g61510 3767597 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
23.0 99.6 14.5 At5g36110 833607 CYP716A1 member of CYP716A O.I. C.G. H.G.
22.8 99.6 56.8 At1g01750 839281 ADF11 (ACTIN DEPOLYMERIZING FACTOR 11) F:actin binding;P:biological_process unknown;C:intracellular;MPOFB O.I. C.G. H.G.
22.7 99.6 96.6 At5g50760 835148 auxin-responsive family protein F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO O.I. C.G. H.G.
22.0 99.6 70.8 At3g26470 822252 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
20.9 99.6 82.4 At4g23700 828470 ATCHX17 (CATION/H+ EXCHANGER 17) member of Putative Na+/H+ antiporter family O.I. C.G. H.G.
20.7 99.6 64.7 At5g07860 830679 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFO O.I. C.G. H.G.
20.7 99.6 40.8 At4g29200 829041 beta-galactosidase F:beta-galactosidase activity;P:carbohydrate metabolic process;C:beta-galactosidase complex;P O.I. C.G. H.G.
20.7 99.6 22.2 At2g16970 816200 MEE15 (maternal effect embryo arrest 15) F:tetracycline transporter activity;P:embryonic development ending in seed dormancy;C:integral to membrane;BOMP O.I. C.G. H.G.
20.5 99.6 30.7 At2g43670 818969 glycosyl hydrolase family protein 17 F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PF O.I. C.G. H.G.
20.2 99.6 29.2 At2g16760 816177 - F:molecular_function unknown;P:unknown;C:endoplasmic reticulum;PBO O.I. C.G. H.G.
20.0 99.6 24.5 At1g14550 838017 anionic peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBM O.I. C.G. H.G.
19.9 99.6 15.4 At4g29180 829039 leucine-rich repeat protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
19.7 99.6 41.9 At3g19660 821503 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
19.5 99.6 14.1 At4g25760 828681 AtGDU2 (Arabidopsis thaliana GLUTAMINE DUMPER 2) F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
19.2 99.6 13.3 At5g61650 836287 CYCP4 The P-type cyclins (CYCPs) share a conserved central region of 100 amino acids ('cyclin box') displaying homology to the corresponding region of the PHO80 cyclin from Saccharomyces cerevisiae and the related G1 cyclins from Trypanosoma cruzi and T. brucei. O.I. C.G. H.G.
18.9 99.5 149.5 At1g02900 839389 RALF1 (RAPID ALKALINIZATION FACTOR 1) Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide. O.I. C.G. H.G.
18.8 99.5 153.1 At3g62680 825442 PRP3 (PROLINE-RICH PROTEIN 3) Proline-rich protein O.I. C.G. H.G.
18.7 99.5 105.2 At2g23540 816886 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOM O.I. C.G. H.G.
18.5 99.5 206.0 At3g57020 824869 strictosidine synthase family protein F:strictosidine synthase activity;P:alkaloid biosynthetic process, biosynthetic process;C:endoplasmic reticulum, vacuole;PMBOFA O.I. C.G. H.G.
18.4 99.5 23.5 At1g35250 840414 thioesterase family protein F:hydrolase activity, acting on ester bonds, acyl-CoA thioesterase activity;P:biological_process unknown;C:cellular_component unknown;BOPA O.I. C.G. H.G.
18.3 99.5 207.0 At5g05960 830481 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P O.I. C.G. H.G.
18.3 99.5 80.7 At4g23710 828471 VAG2 F:hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;P:proton transport;C:plasma membrane, vacuole;MFPOB O.I. C.G. H.G.
18.3 99.5 63.8 At4g17215 827433 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
18.3 99.5 27.0 At1g54540 841896 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
18.1 99.5 223.7 At2g43510 818952 ATTI1 Member of the defensin-like (DEFL) family. Encodes putative trypsin inhibitor protein which may function in defense against herbivory. O.I. C.G. H.G.
18.0 99.5 105.0 At4g25820 828687 XTR9 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 9) Encodes a xyloglucan endotransglycosylase with a clear preference for non-fucosylated xyloglucan polymer. O.I. C.G. H.G.
18.0 99.5 79.1 At3g03050 821148 CSLD3 (CELLULOSE SYNTHASE-LIKE D3) encodes a cellulose synthase like protein. mutations initiate root hairs that rupture at their tip soon after initiation. is required for the synthesis of a noncellulosic wall polysaccharide. O.I. C.G. H.G.
18.0 99.5 47.3 At5g13900 831237 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:anchored to membrane;P O.I. C.G. H.G.
18.0 99.5 39.0 At4g05200 825868 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
17.9 99.5 149.3 At3g47833 823938 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
17.7 99.5 48.2 At4g37060 829860 PLP5 (PATATIN-LIKE PROTEIN 5) F:nutrient reservoir activity;P:metabolic process, lipid metabolic process;C:cellular_component unknown;PBOMF O.I. C.G. H.G.
17.7 99.5 34.3 At4g24140 828514 hydrolase, alpha/beta fold family protein F:hydrolase activity;P:unknown;C:endomembrane system;BOMPFAV O.I. C.G. H.G.
17.7 99.5 8.8 At5g07450 830636 CYCP4 F:cyclin-dependent protein kinase activity;P:regulation of cell cycle;C:cellular_component unknown;FOMPB O.I. C.G. H.G.
17.6 99.5 37.0 At2g18360 816351 hydrolase, alpha/beta fold family protein F:hydrolase activity;P:unknown;C:endomembrane system;BOMPFA O.I. C.G. H.G.
17.5 99.5 43.3 At2g46740 819287 FAD-binding domain-containing protein F:oxidoreductase activity, D-arabinono-1,4-lactone oxidase activity, FAD binding, catalytic activity;P:unknown;C:cell wall;BOFPMA O.I. C.G. H.G.
17.3 99.5 14.2 At1g51990 841628 O-methyltransferase family 2 protein F:O-methyltransferase activity;P:lignin biosynthetic process;C:cytosol;PBFOM O.I. C.G. H.G.
17.2 99.5 44.9 At1g68850 843218 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBM O.I. C.G. H.G.
17.1 99.5 208.5 At3g44190 823541 pyridine nucleotide-disulphide oxidoreductase family protein F:electron carrier activity, oxidoreductase activity, FAD binding;P:unknown;C:unknown;BOFAMP O.I. C.G. H.G.
16.8 99.5 104.3 At1g23720 838982 proline-rich extensin-like family protein F:structural constituent of cell wall;P:plant-type cell wall organization;C:unknown;MBFOPVA O.I. C.G. H.G.
16.8 99.5 30.6 At1g14240 837985 nucleoside phosphatase family protein / GDA1/CD39 family protein F:hydrolase activity;P:biological_process unknown;C:cellular_component unknown;MFPOB O.I. C.G. H.G.
16.8 99.5 29.2 At1g66800 842998 cinnamyl-alcohol dehydrogenase family / CAD family similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), apple tree, PIR:T16995; NOT a cinnamyl-alcohol dehydrogenase O.I. C.G. H.G.
16.7 99.5 80.9 At1g17190 838290 ATGSTU26 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 26) Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). O.I. C.G. H.G.
16.5 99.5 29.2 At5g09980 830859 PROPEP4 (Elicitor peptide 4 precursor) F:molecular_function unknown;P:response to jasmonic acid stimulus;C:endomembrane system;P O.I. C.G. H.G.
16.4 99.5 43.3 At4g01390 828075 - F:molecular_function unknown;P:biological_process unknown;C:unknown;PO O.I. C.G. H.G.
16.4 99.5 25.6 At1g12950 837853 MATE efflux family protein F:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFMA O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
269.7	100.0	122.8	At3g26460	822251	major latex protein-related / MLP-related	F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P	O.I.	C.G.	H.G.
143.6	99.9	76.3	At2g47200	819333	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
142.6	99.9	134.9	At5g38910	833883	germin-like protein, putative	F:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PFOB	O.I.	C.G.	H.G.
60.7	99.8	65.4	At3g48920	824053	AtMYB45 (myb domain protein 45)	Member of the R2R3 factor gene family.	O.I.	C.G.	H.G.
58.6	99.8	224.0	At2g16005	816096	MD-2-related lipid recognition domain-containing protein / ML domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PFO	O.I.	C.G.	H.G.
57.9	99.8	84.6	At4g28940	829015	catalytic	F:catalytic activity;P:nucleoside metabolic process;C:endomembrane system;BPO	O.I.	C.G.	H.G.
57.7	99.8	91.0	At3g28550	822485	proline-rich extensin-like family protein	F:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MPFBOVA	O.I.	C.G.	H.G.
55.1	99.8	91.7	At1g14120	837971	2-oxoglutarate-dependent dioxygenase, putative	F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity;P:biological_process unknown;C:cellular_component unknown;POBFM	O.I.	C.G.	H.G.
53.4	99.8	62.5	At1g26390	839181	FAD-binding domain-containing protein	F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;FBPOAM	O.I.	C.G.	H.G.
52.0	99.8	203.9	At2g18370	816352	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	Predicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.	O.I.	C.G.	H.G.
50.8	99.8	151.1	At4g11190	826721	disease resistance-responsive family protein / dirigent family protein	F:molecular_function unknown;P:lignan biosynthetic process, defense response;C:endomembrane system;P	O.I.	C.G.	H.G.
49.4	99.8	29.5	At4g31970	829327	CYP82C2	member of CYP82C	O.I.	C.G.	H.G.
46.8	99.8	243.4	At3g09270	820083	ATGSTU8 (GLUTATHIONE S-TRANSFERASE TAU 8)	Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).	O.I.	C.G.	H.G.
44.9	99.8	108.0	At2g44370	819044	DC1 domain-containing protein	F:unknown;P:unknown;C:unknown;POMF	O.I.	C.G.	H.G.
43.2	99.8	188.1	At3g58550	825024	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:anchored to membrane;P	O.I.	C.G.	H.G.
38.8	99.8	27.6	At3g46700	823823	UDP-glycosyltransferase/ transferase, transferring glycosyl groups	F:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:unknown;PMBVOF	O.I.	C.G.	H.G.
38.5	99.8	46.3	At5g02420	831836	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
38.0	99.8	87.5	At2g29490	817498	ATGSTU1 (GLUTATHIONE S-TRANSFERASE TAU 1)	Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).	O.I.	C.G.	H.G.
37.9	99.8	77.9	At2g30750	817626	CYP71A12 (cytochrome P450, family 71, subfamily A, polypeptide 12)	putative cytochrome P450	O.I.	C.G.	H.G.
36.7	99.7	56.3	At5g63590	836478	FLS3 (FLAVONOL SYNTHASE 3)	F:flavonol synthase activity;P:response to light stimulus, response to sucrose stimulus, flavonoid biosynthetic process;C:cellular_component unknown;POBFM	O.I.	C.G.	H.G.
36.0	99.7	91.6	At1g21100	838706	O-methyltransferase, putative	F:methyltransferase activity, O-methyltransferase activity, protein dimerization activity;P:unknown;C:cytosol;PBFOM	O.I.	C.G.	H.G.
35.9	99.7	51.6	At2g35380	818105	peroxidase 20 (PER20) (P20)	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOB	O.I.	C.G.	H.G.
35.7	99.7	110.3	At3g12700	820452	aspartyl protease family protein	F:aspartic-type endopeptidase activity;P:proteolysis;C:cellular_component unknown;PMFO	O.I.	C.G.	H.G.
33.4	99.7	49.1	At4g37010	829855	caltractin, putative / centrin, putative	F:calcium ion binding;P:biological_process unknown;C:unknown;MFPOB	O.I.	C.G.	H.G.
31.8	99.7	144.4	At5g13750	831220	ZIFL1 (ZINC INDUCED FACILITATOR-like 1)	F:tetracycline:hydrogen antiporter activity;P:response to antibiotic, tetracycline transport;C:integral to membrane;BFOMAP	O.I.	C.G.	H.G.
30.5	99.7	161.6	At1g18980	838479	germin-like protein, putative	F:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PBFO	O.I.	C.G.	H.G.
29.8	99.7	209.9	At1g17170	838288	ATGSTU24 (GLUTATHIONE S-TRANSFERASE TAU 24)	Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).	O.I.	C.G.	H.G.
29.7	99.7	32.7	At1g68880	843221	AtbZIP (Arabidopsis thaliana basic leucine-zipper 8)	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus, chloroplast;PMFO	O.I.	C.G.	H.G.
29.6	99.7	41.0	At1g68450	843174	VQ motif-containing protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
29.0	99.7	160.7	At1g14960	838061	major latex protein-related / MLP-related	F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P	O.I.	C.G.	H.G.
28.9	99.7	115.6	At3g57010	824868	strictosidine synthase family protein	F:strictosidine synthase activity;P:alkaloid biosynthetic process, biosynthetic process;C:endoplasmic reticulum;PMBOA	O.I.	C.G.	H.G.
28.9	99.7	16.1	At1g11450	837687	nodulin MtN21 family protein	F:unknown;P:unknown;C:endomembrane system, membrane;PBOAM	O.I.	C.G.	H.G.
28.8	99.7	75.0	At2g15120	3768033	-	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
28.8	99.7	28.2	At5g49350	3771473	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MBOPFVA	O.I.	C.G.	H.G.
27.5	99.7	103.8	At1g56320	842085	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;P	O.I.	C.G.	H.G.
27.4	99.7	41.0	At5g22410	832302	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFO	O.I.	C.G.	H.G.
26.9	99.7	80.5	At5g10140	830878	FLC (FLOWERING LOCUS C)	MADS-box protein encoded by FLOWERING LOCUS C - transcription factor that functions as a repressor of floral transition and contributes to temperature compensation of the circadian clock. Expression is downregulated during cold treatment. Vernalization, FRI and the autonomous pathway all influence the state of FLC chromatin. Both maternal and paternal alleles are reset by vernalization, but their earliest activation differs in timing and location. Histone H3 trimethylation at lysine 4 and histone acetylation are associated with active FLC expression, whereas histone deacetylation and histone H3 dimethylation at lysines 9 and 27 are involved in FLC repression. Expression is also repressed by two small RNAs (30- and 24-nt) complementary to the FLC sense strand 3� to the polyA site. The small RNAs are most likely derived from an antisense transcript of FLC. Interacts with SOC1 and FT chromatin in vivo. Member of a protein complex.	O.I.	C.G.	H.G.
26.4	99.7	41.4	At4g35150	829667	O-methyltransferase family 2 protein	F:methyltransferase activity, O-methyltransferase activity, protein dimerization activity;P:unknown;C:cytosol;PBFMO	O.I.	C.G.	H.G.
26.3	99.7	55.2	At2g44940	819103	AP2 domain-containing transcription factor TINY, putative	encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.	O.I.	C.G.	H.G.
26.3	99.7	37.2	At1g18870	838468	ICS2 (ISOCHORISMATE SYNTHASE 2)	Encodes a protein with isochorismate synthase activity involved in phylloquinone biosynthesis. Mutant studies of this gene's function suggest that its function is redundant with that of ICS1 (AT1G7410).	O.I.	C.G.	H.G.
26.3	99.7	30.6	At4g33730	829515	pathogenesis-related protein, putative	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFOB	O.I.	C.G.	H.G.
25.9	99.7	203.7	At1g78340	844169	ATGSTU22 (GLUTATHIONE S-TRANSFERASE TAU 22)	Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).	O.I.	C.G.	H.G.
25.2	99.6	98.1	At4g29270	829048	acid phosphatase class B family protein	F:acid phosphatase activity;P:biological_process unknown;C:endomembrane system;PBO	O.I.	C.G.	H.G.
24.6	99.6	49.6	At1g34510	840353	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFO	O.I.	C.G.	H.G.
24.4	99.6	31.4	At1g35260	840415	MLP165 (MLP-LIKE PROTEIN 165)	F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P	O.I.	C.G.	H.G.
24.3	99.6	26.1	At1g52820	841715	2-oxoglutarate-dependent dioxygenase, putative	F:oxidoreductase activity;P:unknown;C:unknown;POBFM	O.I.	C.G.	H.G.
24.3	99.6	18.5	At4g00670	828034	DNA binding	F:DNA binding;P:unknown;C:unknown;POFM	O.I.	C.G.	H.G.
24.2	99.6	21.3	At1g20490	838637	AMP-dependent synthetase and ligase family protein	F:4-coumarate-CoA ligase activity;P:phenylpropanoid metabolic process, metabolic process;C:unknown;BOMFPAV	O.I.	C.G.	H.G.
24.1	99.6	23.4	At1g24430	839059	transferase/ transferase, transferring acyl groups other than amino-acyl groups	F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:N-terminal protein myristoylation;C:cellular_component unknown;PF	O.I.	C.G.	H.G.
23.9	99.6	152.0	At5g59520	836071	ZIP2	encodes a metal ion transporter whose expression is regulated by copper.	O.I.	C.G.	H.G.
23.9	99.6	112.1	At5g09480	830807	hydroxyproline-rich glycoprotein family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OBMFPVA	O.I.	C.G.	H.G.
23.9	99.6	47.4	At5g07870	830680	transferase family protein	F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFO	O.I.	C.G.	H.G.
23.7	99.6	108.1	At1g30700	839950	FAD-binding domain-containing protein	F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;BFPOA	O.I.	C.G.	H.G.
23.5	99.6	80.2	At2g46750	819288	FAD-binding domain-containing protein	F:oxidoreductase activity, D-arabinono-1,4-lactone oxidase activity, FAD binding, catalytic activity;P:unknown;C:membrane;BOPFMA	O.I.	C.G.	H.G.
23.4	99.6	16.8	At1g61510	3767597	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
23.0	99.6	14.5	At5g36110	833607	CYP716A1	member of CYP716A	O.I.	C.G.	H.G.
22.8	99.6	56.8	At1g01750	839281	ADF11 (ACTIN DEPOLYMERIZING FACTOR 11)	F:actin binding;P:biological_process unknown;C:intracellular;MPOFB	O.I.	C.G.	H.G.
22.7	99.6	96.6	At5g50760	835148	auxin-responsive family protein	F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO	O.I.	C.G.	H.G.
22.0	99.6	70.8	At3g26470	822252	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
20.9	99.6	82.4	At4g23700	828470	ATCHX17 (CATION/H+ EXCHANGER 17)	member of Putative Na+/H+ antiporter family	O.I.	C.G.	H.G.
20.7	99.6	64.7	At5g07860	830679	transferase family protein	F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFO	O.I.	C.G.	H.G.
20.7	99.6	40.8	At4g29200	829041	beta-galactosidase	F:beta-galactosidase activity;P:carbohydrate metabolic process;C:beta-galactosidase complex;P	O.I.	C.G.	H.G.
20.7	99.6	22.2	At2g16970	816200	MEE15 (maternal effect embryo arrest 15)	F:tetracycline transporter activity;P:embryonic development ending in seed dormancy;C:integral to membrane;BOMP	O.I.	C.G.	H.G.
20.5	99.6	30.7	At2g43670	818969	glycosyl hydrolase family protein 17	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PF	O.I.	C.G.	H.G.
20.2	99.6	29.2	At2g16760	816177	-	F:molecular_function unknown;P:unknown;C:endoplasmic reticulum;PBO	O.I.	C.G.	H.G.
20.0	99.6	24.5	At1g14550	838017	anionic peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBM	O.I.	C.G.	H.G.
19.9	99.6	15.4	At4g29180	829039	leucine-rich repeat protein kinase, putative	F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
19.7	99.6	41.9	At3g19660	821503	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
19.5	99.6	14.1	At4g25760	828681	AtGDU2 (Arabidopsis thaliana GLUTAMINE DUMPER 2)	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
19.2	99.6	13.3	At5g61650	836287	CYCP4	The P-type cyclins (CYCPs) share a conserved central region of 100 amino acids ('cyclin box') displaying homology to the corresponding region of the PHO80 cyclin from Saccharomyces cerevisiae and the related G1 cyclins from Trypanosoma cruzi and T. brucei.	O.I.	C.G.	H.G.
18.9	99.5	149.5	At1g02900	839389	RALF1 (RAPID ALKALINIZATION FACTOR 1)	Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.	O.I.	C.G.	H.G.
18.8	99.5	153.1	At3g62680	825442	PRP3 (PROLINE-RICH PROTEIN 3)	Proline-rich protein	O.I.	C.G.	H.G.
18.7	99.5	105.2	At2g23540	816886	GDSL-motif lipase/hydrolase family protein	F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOM	O.I.	C.G.	H.G.
18.5	99.5	206.0	At3g57020	824869	strictosidine synthase family protein	F:strictosidine synthase activity;P:alkaloid biosynthetic process, biosynthetic process;C:endoplasmic reticulum, vacuole;PMBOFA	O.I.	C.G.	H.G.
18.4	99.5	23.5	At1g35250	840414	thioesterase family protein	F:hydrolase activity, acting on ester bonds, acyl-CoA thioesterase activity;P:biological_process unknown;C:cellular_component unknown;BOPA	O.I.	C.G.	H.G.
18.3	99.5	207.0	At5g05960	830481	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:endomembrane system;P	O.I.	C.G.	H.G.
18.3	99.5	80.7	At4g23710	828471	VAG2	F:hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;P:proton transport;C:plasma membrane, vacuole;MFPOB	O.I.	C.G.	H.G.
18.3	99.5	63.8	At4g17215	827433	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
18.3	99.5	27.0	At1g54540	841896	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
18.1	99.5	223.7	At2g43510	818952	ATTI1	Member of the defensin-like (DEFL) family. Encodes putative trypsin inhibitor protein which may function in defense against herbivory.	O.I.	C.G.	H.G.
18.0	99.5	105.0	At4g25820	828687	XTR9 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 9)	Encodes a xyloglucan endotransglycosylase with a clear preference for non-fucosylated xyloglucan polymer.	O.I.	C.G.	H.G.
18.0	99.5	79.1	At3g03050	821148	CSLD3 (CELLULOSE SYNTHASE-LIKE D3)	encodes a cellulose synthase like protein. mutations initiate root hairs that rupture at their tip soon after initiation. is required for the synthesis of a noncellulosic wall polysaccharide.	O.I.	C.G.	H.G.
18.0	99.5	47.3	At5g13900	831237	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:anchored to membrane;P	O.I.	C.G.	H.G.
18.0	99.5	39.0	At4g05200	825868	protein kinase family protein	F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
17.9	99.5	149.3	At3g47833	823938	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
17.7	99.5	48.2	At4g37060	829860	PLP5 (PATATIN-LIKE PROTEIN 5)	F:nutrient reservoir activity;P:metabolic process, lipid metabolic process;C:cellular_component unknown;PBOMF	O.I.	C.G.	H.G.
17.7	99.5	34.3	At4g24140	828514	hydrolase, alpha/beta fold family protein	F:hydrolase activity;P:unknown;C:endomembrane system;BOMPFAV	O.I.	C.G.	H.G.
17.7	99.5	8.8	At5g07450	830636	CYCP4	F:cyclin-dependent protein kinase activity;P:regulation of cell cycle;C:cellular_component unknown;FOMPB	O.I.	C.G.	H.G.
17.6	99.5	37.0	At2g18360	816351	hydrolase, alpha/beta fold family protein	F:hydrolase activity;P:unknown;C:endomembrane system;BOMPFA	O.I.	C.G.	H.G.
17.5	99.5	43.3	At2g46740	819287	FAD-binding domain-containing protein	F:oxidoreductase activity, D-arabinono-1,4-lactone oxidase activity, FAD binding, catalytic activity;P:unknown;C:cell wall;BOFPMA	O.I.	C.G.	H.G.
17.3	99.5	14.2	At1g51990	841628	O-methyltransferase family 2 protein	F:O-methyltransferase activity;P:lignin biosynthetic process;C:cytosol;PBFOM	O.I.	C.G.	H.G.
17.2	99.5	44.9	At1g68850	843218	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBM	O.I.	C.G.	H.G.
17.1	99.5	208.5	At3g44190	823541	pyridine nucleotide-disulphide oxidoreductase family protein	F:electron carrier activity, oxidoreductase activity, FAD binding;P:unknown;C:unknown;BOFAMP	O.I.	C.G.	H.G.
16.8	99.5	104.3	At1g23720	838982	proline-rich extensin-like family protein	F:structural constituent of cell wall;P:plant-type cell wall organization;C:unknown;MBFOPVA	O.I.	C.G.	H.G.
16.8	99.5	30.6	At1g14240	837985	nucleoside phosphatase family protein / GDA1/CD39 family protein	F:hydrolase activity;P:biological_process unknown;C:cellular_component unknown;MFPOB	O.I.	C.G.	H.G.
16.8	99.5	29.2	At1g66800	842998	cinnamyl-alcohol dehydrogenase family / CAD family	similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), apple tree, PIR:T16995; NOT a cinnamyl-alcohol dehydrogenase	O.I.	C.G.	H.G.
16.7	99.5	80.9	At1g17190	838290	ATGSTU26 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 26)	Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).	O.I.	C.G.	H.G.
16.5	99.5	29.2	At5g09980	830859	PROPEP4 (Elicitor peptide 4 precursor)	F:molecular_function unknown;P:response to jasmonic acid stimulus;C:endomembrane system;P	O.I.	C.G.	H.G.
16.4	99.5	43.3	At4g01390	828075	-	F:molecular_function unknown;P:biological_process unknown;C:unknown;PO	O.I.	C.G.	H.G.
16.4	99.5	25.6	At1g12950	837853	MATE efflux family protein	F:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFMA	O.I.	C.G.	H.G.

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GSM ID	GSM142675
Assay name	SF002_ATH1_A6-Fille-WT+dex
GSE experiment	GSE6155: Nutritional control of plant development: molecular analysis of the NO3- response pathway in Arabidopsis roots.

Microarray experiments to specifically-expressed genes

GSM ID GSM142675 Assay name SF002_ATH1_A6-Fille-WT+dex GSE experiment GSE6155: Nutritional control of plant development: molecular analysis of the NO3- response pathway in Arabidopsis roots.

GSM ID GSM142675

Assay name SF002_ATH1_A6-Fille-WT+dex

GSE experiment GSE6155: Nutritional control of plant development: molecular analysis of the NO3- response pathway in Arabidopsis roots.