Microarray experiments to specifically-expressed genes

GSM ID GSM142674
Assay name SF002_ATH1_A5-Fille-WTnodex
GSE experiment GSE6155: Nutritional control of plant development: molecular analysis of the NO3- response pathway in Arabidopsis roots.

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
209.2100.0163.4At5g38910833883germin-like protein, putativeF:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PFOBO.I.C.G.H.G.
174.7100.098.8At3g26460822251major latex protein-related / MLP-relatedF:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;PO.I.C.G.H.G.
95.499.9117.0At3g28550822485proline-rich extensin-like family proteinF:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MPFBOVAO.I.C.G.H.G.
83.199.9101.3At4g28940829015catalyticF:catalytic activity;P:nucleoside metabolic process;C:endomembrane system;BPOO.I.C.G.H.G.
75.999.955.4At2g47200819333unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
58.099.8222.9At2g16005816096MD-2-related lipid recognition domain-containing protein / ML domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PFOO.I.C.G.H.G.
53.099.8134.5At3g12700820452aspartyl protease family proteinF:aspartic-type endopeptidase activity;P:proteolysis;C:cellular_component unknown;PMFOO.I.C.G.H.G.
46.699.830.3At3g46700823823UDP-glycosyltransferase/ transferase, transferring glycosyl groupsF:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:unknown;PMBVOFO.I.C.G.H.G.
46.599.8192.7At2g18370816352protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinPredicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.O.I.C.G.H.G.
45.999.8109.1At2g44370819044DC1 domain-containing proteinF:unknown;P:unknown;C:unknown;POMFO.I.C.G.H.G.
44.799.8238.0At3g09270820083ATGSTU8 (GLUTATHIONE S-TRANSFERASE TAU 8)Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).O.I.C.G.H.G.
42.699.828.3At1g20490838637AMP-dependent synthetase and ligase family proteinF:4-coumarate-CoA ligase activity;P:phenylpropanoid metabolic process, metabolic process;C:unknown;BOMFPAVO.I.C.G.H.G.
40.499.853.3At3g48920824053AtMYB45 (myb domain protein 45)Member of the R2R3 factor gene family.O.I.C.G.H.G.
39.399.877.4At1g141208379712-oxoglutarate-dependent dioxygenase, putativeF:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity;P:biological_process unknown;C:cellular_component unknown;POBFMO.I.C.G.H.G.
37.799.793.8At1g21100838706O-methyltransferase, putativeF:methyltransferase activity, O-methyltransferase activity, protein dimerization activity;P:unknown;C:cytosol;PBFOMO.I.C.G.H.G.
36.499.7172.6At3g58550825024protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:anchored to membrane;PO.I.C.G.H.G.
34.999.724.8At4g31970829327CYP82C2member of CYP82CO.I.C.G.H.G.
34.799.774.5At2g30750817626CYP71A12 (cytochrome P450, family 71, subfamily A, polypeptide 12)putative cytochrome P450O.I.C.G.H.G.
34.299.721.7At1g78990844239transferase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFBO.I.C.G.H.G.
33.399.795.6At2g46750819288FAD-binding domain-containing proteinF:oxidoreductase activity, D-arabinono-1,4-lactone oxidase activity, FAD binding, catalytic activity;P:unknown;C:membrane;BOPFMAO.I.C.G.H.G.
32.099.748.7At2g35380818105peroxidase 20 (PER20) (P20)F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBO.I.C.G.H.G.
31.699.779.7At2g29490817498ATGSTU1 (GLUTATHIONE S-TRANSFERASE TAU 1)Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).O.I.C.G.H.G.
31.399.750.2At4g29200829041beta-galactosidaseF:beta-galactosidase activity;P:carbohydrate metabolic process;C:beta-galactosidase complex;PO.I.C.G.H.G.
28.899.7156.9At1g18980838479germin-like protein, putativeF:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PBFOO.I.C.G.H.G.
28.799.7113.5At4g11190826721disease resistance-responsive family protein / dirigent family proteinF:molecular_function unknown;P:lignan biosynthetic process, defense response;C:endomembrane system;PO.I.C.G.H.G.
28.699.749.7At5g63590836478FLS3 (FLAVONOL SYNTHASE 3)F:flavonol synthase activity;P:response to light stimulus, response to sucrose stimulus, flavonoid biosynthetic process;C:cellular_component unknown;POBFMO.I.C.G.H.G.
27.799.781.5At5g10140830878FLC (FLOWERING LOCUS C)MADS-box protein encoded by FLOWERING LOCUS C - transcription factor that functions as a repressor of floral transition and contributes to temperature compensation of the circadian clock. Expression is downregulated during cold treatment. Vernalization, FRI and the autonomous pathway all influence the state of FLC chromatin. Both maternal and paternal alleles are reset by vernalization, but their earliest activation differs in timing and location. Histone H3 trimethylation at lysine 4 and histone acetylation are associated with active FLC expression, whereas histone deacetylation and histone H3 dimethylation at lysines 9 and 27 are involved in FLC repression. Expression is also repressed by two small RNAs (30- and 24-nt) complementary to the FLC sense strand 3 to the polyA site. The small RNAs are most likely derived from an antisense transcript of FLC. Interacts with SOC1 and FT chromatin in vivo. Member of a protein complex.O.I.C.G.H.G.
27.299.7200.7At1g17170838288ATGSTU24 (GLUTATHIONE S-TRANSFERASE TAU 24)Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).O.I.C.G.H.G.
27.299.727.4At5g493503771473unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MBOPFVAO.I.C.G.H.G.
26.999.7154.9At1g14960838061major latex protein-related / MLP-relatedF:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;PO.I.C.G.H.G.
26.999.744.4At1g26390839181FAD-binding domain-containing proteinF:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;FBPOAMO.I.C.G.H.G.
26.599.795.9At3g03050821148CSLD3 (CELLULOSE SYNTHASE-LIKE D3)encodes a cellulose synthase like protein. mutations initiate root hairs that rupture at their tip soon after initiation. is required for the synthesis of a noncellulosic wall polysaccharide.O.I.C.G.H.G.
26.199.785.3At3g16800820933protein phosphatase 2C, putative / PP2C, putativeF:protein serine/threonine phosphatase activity, catalytic activity;P:biological_process unknown;C:nucleus, cytoplasm;PMOFVO.I.C.G.H.G.
26.099.732.2At1g12950837853MATE efflux family proteinF:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFMAO.I.C.G.H.G.
25.699.717.6At1g615103767597transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
25.599.7108.6At3g57010824868strictosidine synthase family proteinF:strictosidine synthase activity;P:alkaloid biosynthetic process, biosynthetic process;C:endoplasmic reticulum;PMBOAO.I.C.G.H.G.
25.499.670.3At2g151203768033-F:unknown;P:unknown;C:unknownO.I.C.G.H.G.
24.999.675.3At3g26470822252-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
24.999.615.9At4g25760828681AtGDU2 (Arabidopsis thaliana GLUTAMINE DUMPER 2)F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
24.299.688.7At4g23700828470ATCHX17 (CATION/H+ EXCHANGER 17)member of Putative Na+/H+ antiporter familyO.I.C.G.H.G.
24.299.656.4At4g37060829860PLP5 (PATATIN-LIKE PROTEIN 5)F:nutrient reservoir activity;P:metabolic process, lipid metabolic process;C:cellular_component unknown;PBOMFO.I.C.G.H.G.
24.299.639.7At4g35150829667O-methyltransferase family 2 proteinF:methyltransferase activity, O-methyltransferase activity, protein dimerization activity;P:unknown;C:cytosol;PBFMOO.I.C.G.H.G.
23.799.6124.8At5g13750831220ZIFL1 (ZINC INDUCED FACILITATOR-like 1)F:tetracycline:hydrogen antiporter activity;P:response to antibiotic, tetracycline transport;C:integral to membrane;BFOMAPO.I.C.G.H.G.
23.699.651.4At5g23220832386NIC3 (NICOTINAMIDASE 3)F:nicotinamidase activity, catalytic activity;P:metabolic process;C:unknown;BOAFPO.I.C.G.H.G.
23.499.6170.7At3g62680825442PRP3 (PROLINE-RICH PROTEIN 3)Proline-rich proteinO.I.C.G.H.G.
23.499.683.7At5g58860836003CYP86A1 (CYTOCHROME P450 86 A1)Encodes a member of the CYP86A subfamily of cytochrome p450 genes. Expressed significantly only in root tissue.O.I.C.G.H.G.
23.099.634.8At1g18870838468ICS2 (ISOCHORISMATE SYNTHASE 2)Encodes a protein with isochorismate synthase activity involved in phylloquinone biosynthesis. Mutant studies of this gene's function suggest that its function is redundant with that of ICS1 (AT1G7410).O.I.C.G.H.G.
23.099.618.0At4g00670828034DNA bindingF:DNA binding;P:unknown;C:unknown;POFMO.I.C.G.H.G.
22.499.625.1At1g528208417152-oxoglutarate-dependent dioxygenase, putativeF:oxidoreductase activity;P:unknown;C:unknown;POBFMO.I.C.G.H.G.
22.199.641.4At2g18360816351hydrolase, alpha/beta fold family proteinF:hydrolase activity;P:unknown;C:endomembrane system;BOMPFAO.I.C.G.H.G.
21.899.616.2At4g29180829039leucine-rich repeat protein kinase, putativeF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
21.799.639.6At4g37010829855caltractin, putative / centrin, putativeF:calcium ion binding;P:biological_process unknown;C:unknown;MFPOBO.I.C.G.H.G.
21.799.627.9At1g68880843221AtbZIP (Arabidopsis thaliana basic leucine-zipper 8)F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus, chloroplast;PMFOO.I.C.G.H.G.
21.699.69.7At5g07450830636CYCP4F:cyclin-dependent protein kinase activity;P:regulation of cell cycle;C:cellular_component unknown;FOMPBO.I.C.G.H.G.
21.499.6117.6At1g23720838982proline-rich extensin-like family proteinF:structural constituent of cell wall;P:plant-type cell wall organization;C:unknown;MBFOPVAO.I.C.G.H.G.
21.299.627.5At4g33730829515pathogenesis-related protein, putativeF:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFOBO.I.C.G.H.G.
21.299.613.9At5g36110833607CYP716A1member of CYP716AO.I.C.G.H.G.
21.199.649.4At2g44940819103AP2 domain-containing transcription factor TINY, putativeencodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.O.I.C.G.H.G.
20.699.633.9At5g02420831836unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
20.699.616.8At5g36140833611CYP716A2member of CYP716AO.I.C.G.H.G.
20.599.6103.9At5g09480830807hydroxyproline-rich glycoprotein family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OBMFPVAO.I.C.G.H.G.
20.599.634.1At1g68450843174VQ motif-containing proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.C.G.H.G.
20.599.621.6At1g24430839059transferase/ transferase, transferring acyl groups other than amino-acyl groupsF:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:N-terminal protein myristoylation;C:cellular_component unknown;PFO.I.C.G.H.G.
20.599.619.3At1g27140839603ATGSTU14 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 14)Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).O.I.C.G.H.G.
20.499.6140.3At5g59520836071ZIP2encodes a metal ion transporter whose expression is regulated by copper.O.I.C.G.H.G.
20.499.643.9At5g07870830680transferase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFOO.I.C.G.H.G.
20.399.620.1At3g18400821369anac058 (Arabidopsis NAC domain containing protein 58)F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;POO.I.C.G.H.G.
20.299.638.6At1g01190839233CYP78A8member of CYP78AO.I.C.G.H.G.
20.199.688.7At1g56320842085unknown proteinF:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;PO.I.C.G.H.G.
20.199.681.9At4g20390827787integral membrane family proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
20.199.663.1At5g37690833748GDSL-motif lipase/hydrolase family proteinF:lipase activity, hydrolase activity, acting on ester bonds;P:lipid metabolic process;C:endomembrane system;PBFOMO.I.C.G.H.G.
19.699.623.5At4g31940829324CYP82C4member of CYP82CO.I.C.G.H.G.
19.599.610.9At5g04370830316NAMT1A member of the Arabidopsis SABATH methyltransferase gene family. Encodes NAMT1, a methyltransferase that methylates nicotinic acid.O.I.C.G.H.G.
19.399.640.3At4g05200825868protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
19.299.697.2At1g30700839950FAD-binding domain-containing proteinF:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;BFPOAO.I.C.G.H.G.
19.299.646.4At2g39110818497protein kinase, putativeF:protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVAO.I.C.G.H.G.
19.099.5174.8At1g78340844169ATGSTU22 (GLUTATHIONE S-TRANSFERASE TAU 22)Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).O.I.C.G.H.G.
18.999.526.1At1g49960841419xanthine/uracil permease family proteinF:transmembrane transporter activity;P:transport;C:membrane;BOMPFAVO.I.C.G.H.G.
18.799.543.2At1g34510840353peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOO.I.C.G.H.G.
18.599.555.7At5g35190833473proline-rich extensin-like family proteinF:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MFPOBVAO.I.C.G.H.G.
18.299.597.4At3g61990825372O-methyltransferase family 3 proteinF:O-methyltransferase activity;P:unknown;C:cytosol;BOPMFAO.I.C.G.H.G.
18.299.557.2At3g54580824623proline-rich extensin-like family proteinF:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MFBPOVAO.I.C.G.H.G.
17.899.554.3At5g04960830378pectinesterase family proteinF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFMOO.I.C.G.H.G.
17.699.551.1At4g18360827563(S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putativeF:glycolate oxidase activity, electron carrier activity, oxidoreductase activity, FMN binding, catalytic activity;P:metabolic process;C:peroxisome;OBFMPAO.I.C.G.H.G.
17.599.517.8At3g28320822460-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBOO.I.C.G.H.G.
17.299.533.7At4g24140828514hydrolase, alpha/beta fold family proteinF:hydrolase activity;P:unknown;C:endomembrane system;BOMPFAVO.I.C.G.H.G.
17.199.5244.9At3g01420821135DOX1Encodes an alpha-dioxygenase involved in protection against oxidative stress and cell death. Induced in response to Salicylic acid and oxidative stress. Independent of NPR1 in induction by salicylic acid.O.I.C.G.H.G.
17.099.5199.5At5g05960830481protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PO.I.C.G.H.G.
16.999.5197.1At3g57020824869strictosidine synthase family proteinF:strictosidine synthase activity;P:alkaloid biosynthetic process, biosynthetic process;C:endoplasmic reticulum, vacuole;PMBOFAO.I.C.G.H.G.
16.999.550.2At5g63560836475transferase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFO.I.C.G.H.G.
16.999.57.0At2g29150817464tropinone reductase, putative / tropine dehydrogenase, putativeF:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPAVO.I.C.G.H.G.
16.899.555.2At5g13580831202ABC transporter family proteinF:ATPase activity, coupled to transmembrane movement of substances;P:response to nematode;C:membrane;BOMAFPVO.I.C.G.H.G.
16.799.583.2At1g74460843787GDSL-motif lipase/hydrolase family proteinF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOMO.I.C.G.H.G.
16.699.516.1At2g26290817169ARSK1 (root-specific kinase 1)F:kinase activity;P:response to salt stress, response to water deprivation, response to abscisic acid stimulus;C:unknown;MPOBFVAO.I.C.G.H.G.
16.699.57.3At1g01200839493ATRABA3 (ARABIDOPSIS RAB GTPASE HOMOLOG A3)F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:endosome, nucleus, cell plate;MOFPBVAO.I.C.G.H.G.
16.599.534.8At2g22770816807NAI1regulates the development of ER bodies. also involves in response to the endophytic fungus Piriformospora indica.O.I.C.G.H.G.
16.599.521.5At4g15160827182lipid binding / structural constituent of cell wallF:lipid binding, structural constituent of cell wall;P:lipid transport;C:endomembrane system;MBOPFVAO.I.C.G.H.G.
16.499.531.6At1g14780838043-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO.I.C.G.H.G.
16.399.5203.5At3g44190823541pyridine nucleotide-disulphide oxidoreductase family proteinF:electron carrier activity, oxidoreductase activity, FAD binding;P:unknown;C:unknown;BOFAMPO.I.C.G.H.G.
16.299.531.6At5g22410832302peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOO.I.C.G.H.G.



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