CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM142663

Assay name NE001_ATH1_A1-Evans-w20

GSE experiment GSE6154: Molecular basis of respiratory burst-mediated thermotolerance in Arabidopsis

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
68.2 99.9 38.6 At1g65870 842898 disease resistance-responsive family protein F:molecular_function unknown;P:lignan biosynthetic process, defense response;C:cell wall;P O.I. C.G. H.G.
51.2 99.8 74.9 At5g42760 834285 - F:unknown;P:biological_process unknown;C:cellular_component unknown;BOAPMF O.I. C.G. H.G.
46.7 99.8 19.4 At1g01520 839337 myb family transcription factor F:transcription factor activity, DNA binding;P:response to salt stress, regulation of transcription, DNA-dependent;C:unknown;POM O.I. C.G. H.G.
46.4 99.8 100.3 At5g52570 835334 BETA-OHASE 2 (BETA-CAROTENE HYDROXYLASE 2) Converts β-carotene to zeaxanthin via cryptoxanthin. O.I. C.G. H.G.
44.0 99.8 80.7 At5g23730 832438 nucleotide binding F:nucleotide binding;P:unknown;C:CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex;MFBOPA O.I. C.G. H.G.
40.9 99.8 35.4 At5g56860 835788 GNC (GATA, nitrate-inducible, carbon metabolism-involved) F:transcription factor activity;P:glucose mediated signaling, regulation of nitrogen compound metabolic process;C:nucleus;FPOMB O.I. C.G. H.G.
36.1 99.7 55.8 At3g17609 821027 HYH (HY5-HOMOLOG) F:transcription factor activity, DNA binding;P:response to UV-B, anthocyanin metabolic process, regulation of transcription, DNA-dependent;C:nucleus;MPFO O.I. C.G. H.G.
35.6 99.7 95.1 At5g58770 835991 dehydrodolichyl diphosphate synthase, putative / DEDOL-PP synthase, putative F:dehydrodolichyl diphosphate synthase activity;P:dolichol biosynthetic process;C:chloroplast;OBAFMP O.I. C.G. H.G.
32.5 99.7 29.6 At4g26150 828721 CGA1 (CYTOKININ-RESPONSIVE GATA FACTOR 1) F:transcription factor activity;P:response to cytokinin stimulus;C:nucleus;FPOM O.I. C.G. H.G.
29.2 99.7 126.9 At1g47400 841144 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
29.0 99.7 49.3 At3g21890 821744 zinc finger (B-box type) family protein F:transcription factor activity, zinc ion binding;P:response to UV-B, regulation of transcription;C:intracellular;PO O.I. C.G. H.G.
27.8 99.7 77.0 At2g24540 816990 AFR (ATTENUATED FAR-RED RESPONSE) F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPBOFVA O.I. C.G. H.G.
26.9 99.7 83.1 At5g03555 831791 permease, cytosine/purines, uracil, thiamine, allantoin family protein F:nucleobase transmembrane transporter activity;P:nucleobase, nucleoside, nucleotide and nucleic acid transport;C:membrane;BOFAPM O.I. C.G. H.G.
26.3 99.7 60.6 At1g64500 842758 glutaredoxin family protein F:electron carrier activity, protein disulfide oxidoreductase activity;P:N-terminal protein myristoylation, cell redox homeostasis;C:cellular_component unknown;PMBOF O.I. C.G. H.G.
24.8 99.6 160.1 At1g55960 842047 - F:molecular_function unknown;P:biological_process unknown;C:unknown;MPO O.I. C.G. H.G.
23.7 99.6 25.8 At4g31940 829324 CYP82C4 member of CYP82C O.I. C.G. H.G.
23.4 99.6 63.1 At5g47610 834811 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV O.I. C.G. H.G.
23.1 99.6 59.4 At4g27030 828811 small conjugating protein ligase F:small conjugating protein ligase activity;P:regulation of protein metabolic process, post-translational protein modification;C:chloroplast;MOPBV O.I. C.G. H.G.
22.0 99.6 44.7 At2g27420 817287 cysteine proteinase, putative F:cysteine-type peptidase activity, cysteine-type endopeptidase activity;P:proteolysis;C:endomembrane system;MOPBVAF O.I. C.G. H.G.
20.9 99.6 207.8 At3g21670 821721 nitrate transporter (NTP3) F:transporter activity;P:oligopeptide transport;C:membrane;BPMOF O.I. C.G. H.G.
19.7 99.6 8.6 At4g36470 829799 S-adenosyl-L-methionine:carboxyl methyltransferase family protein F:S-adenosylmethionine-dependent methyltransferase activity;P:biological_process unknown;C:cellular_component unknown;POBMF O.I. C.G. H.G.
18.7 99.5 83.0 At5g24120 832477 SIGE (SIGMA FACTOR E) Encodes a specialized sigma factor that functions in regulation of plastid genes and is responsible for the light-dependent transcription at the psbD LRP. Activation of SIG5 is dependent upon blue light and mediated by cryptochromes. O.I. C.G. H.G.
18.3 99.5 102.0 At2g46830 819296 CCA1 (CIRCADIAN CLOCK ASSOCIATED 1) Encodes a transcriptional repressor that performs overlapping functions with LHY in a regulatory feedback loop that is closely associated with the circadian oscillator of Arabidopsis. Binds to the evening element in the promoter of TOC1 and represses TOC1 transcription. CCA1 and LHY colocalize in the nucleus and form heterodimers in vivo. CCA1 and LHY function synergistically in regulating circadian rhythms of Arabidopsis. O.I. C.G. H.G.
17.2 99.5 29.4 At1g18810 838463 phytochrome kinase substrate-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFBV O.I. C.G. H.G.
16.2 99.5 174.7 At1g01060 839341 LHY (LATE ELONGATED HYPOCOTYL) LHY encodes a myb-related putative transcription factor involved in circadian rhythm along with another myb transcription factor CCA1 O.I. C.G. H.G.
16.2 99.5 32.5 At5g24850 832554 CRY3 (cryptochrome 3) Binds flavin adenine dinucleotide and DNA. It does not have photolyase activity, and it is likely to act as photoreceptor. Closely related to Synechocystis cryptochrome. O.I. C.G. H.G.
16.2 99.5 30.1 At3g47640 823918 basic helix-loop-helix (bHLH) family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus, chloroplast;PMO O.I. C.G. H.G.
16.0 99.5 161.5 At1g32900 840184 starch synthase, putative F:transferase activity, transferring glycosyl groups;P:biosynthetic process, glucan biosynthetic process;C:chloroplast;PBOAFM O.I. C.G. H.G.
15.6 99.5 75.1 At1g42550 840860 PMI1 (PLASTID MOVEMENT IMPAIRED1) Encodes a plant-specific protein of unknown function that appears to be conserved among angiosperms. O.I. C.G. H.G.
15.6 99.5 52.4 At2g36630 818235 unknown protein F:unknown;P:N-terminal protein myristoylation;C:endomembrane system, integral to membrane;BOPA O.I. C.G. H.G.
15.5 99.5 60.0 At4g00050 828175 UNE10 (unfertilized embryo sac 10) F:transcription factor activity, DNA binding;P:double fertilization forming a zygote and endosperm, regulation of transcription;C:nucleus;PMFO O.I. C.G. H.G.
15.5 99.5 42.6 At1g78510 844187 SPS1 (solanesyl diphosphate synthase 1) Encodes a protein with solanesyl diphosphate synthase activity. O.I. C.G. H.G.
15.3 99.4 160.1 At3g56290 824796 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
15.0 99.4 27.2 At1g06180 837127 ATMYB13 (MYB DOMAIN PROTEIN 13) member of MYB3R- and R2R3- type MYB- encoding genes O.I. C.G. H.G.
14.9 99.4 33.6 At1g08250 837345 ADT6 (arogenate dehydratase 6) Encodes a plastid-localized arogenate dehydratase involved in phenylalanine biosynthesis. Not less than six genes encoding ADT were identiﬁed in the Arabidopsis genome: ADT1 [At1g11790]; ADT2 [At3g07630]; ADT3 [At2g27820]; ADT4 [At3g44720]; ADT5 [At5g22630]; and ADT6 [At1g08250]. O.I. C.G. H.G.
14.6 99.4 93.4 At3g08730 820020 PK1 (PROTEIN-SERINE KINASE 1) Encodes a protein-serine kinase that phosphorylates ribosomal protein in vitro. Activation of AtS6k is regulated by 1-naphthylacetic acid and kinetin, at least in part, via a lipid kinase-dependent pathway. Involved in translational up-regulation of ribosomal proteins. Phosphorylated by PDK1. Interacts with RAPTOR1, which in turn interacts with TOR. SPK6 activity is affected by osmotic stress, and plants overexpressing S6k1 are hypersensitive to osmotic stress. The gene is expressed in all tissues examined, with highest expression level detected in metabolically active tissues. O.I. C.G. H.G.
14.5 99.4 26.1 At1g69160 843247 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFMV O.I. C.G. H.G.
14.4 99.4 44.5 At4g24700 828572 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
13.9 99.4 37.3 At3g27350 822356 unknown protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MPOFB O.I. C.G. H.G.
13.9 99.4 27.8 At2g19650 816484 DC1 domain-containing protein F:unknown;P:intracellular signaling cascade;C:unknown;POM O.I. C.G. H.G.
13.8 99.4 87.6 At5g18670 831985 BMY3 putative beta-amylase BMY3 (BMY3) O.I. C.G. H.G.
13.6 99.4 72.4 At3g14770 820705 nodulin MtN3 family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, integral to membrane, membrane;PMO O.I. C.G. H.G.
13.6 99.4 59.1 At1g17050 838275 SPS2 (Solanesyl diphosphate synthase 2) Encodes a protein with solanesyl diphosphate synthase activity. O.I. C.G. H.G.
13.0 99.4 81.4 At5g17050 831568 UGT78D2 (UDP-GLUCOSYL TRANSFERASE 78D2) The At5g17050 encodes a anthocyanidin 3-O-glucosyltransferase which specifically glucosylates the 3-position of the flavonoid C-ring. Anthocyanidins such as cyanidin and pelargonidin as well as flavonols such as kaempferol and quercetin are accepted substrates. O.I. C.G. H.G.
12.8 99.3 22.2 At1g19700 838558 BEL10 (BEL1-LIKE HOMEODOMAIN 10) Encodes a member of the BEL family of homeodomain proteins. Its interaction with PLP (PAS/LOV PROTEIN) is diminished by blue light. O.I. C.G. H.G.
12.6 99.3 64.3 At1g79270 844267 ECT8 (evolutionarily conserved C-terminal region 8) F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFO O.I. C.G. H.G.
12.6 99.3 51.7 At2g01290 814657 ribose-5-phosphate isomerase F:ribose-5-phosphate isomerase activity;P:glucose catabolic process to lactate and acetate, 5-phosphoribose 1-diphosphate biosynthetic process, reductive pentose-phosphate cycle, D-ribose catabolic process, pentose-phosphate shunt, non-oxidative branch;C:cytoplasm;BOAFMP O.I. C.G. H.G.
12.6 99.3 44.1 At5g14760 831328 AO (L-ASPARTATE OXIDASE) At5g14760 encodes for L-aspartate oxidase involved in the early steps of NAD biosynthesis. In contrary to the EC 1.4.3.16 (l-aspartate oxidase - deaminating) the enzyme catalyzes the reaction L-aspartate + O2 = iminoaspartate (alpha-iminosuccinate) + H2O2 O.I. C.G. H.G.
12.4 99.3 49.9 At3g29200 822573 CM1 (CHORISMATE MUTASE 1) L-ascorbate peroxidase O.I. C.G. H.G.
12.3 99.3 55.5 At4g28290 828944 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
12.2 99.3 99.4 At1g68440 843173 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPFB O.I. C.G. H.G.
12.2 99.3 43.1 At1g60590 842353 polygalacturonase, putative / pectinase, putative F:polygalacturonase activity;P:carbohydrate metabolic process;C:unknown;FPBMOVA O.I. C.G. H.G.
12.1 99.3 15.7 At5g37550 833733 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
11.8 99.3 79.3 At2g41250 818724 haloacid dehalogenase-like hydrolase family protein F:hydrolase activity, catalytic activity, phosphoglycolate phosphatase activity;P:metabolic process;C:mitochondrion;BOMAPF O.I. C.G. H.G.
11.7 99.3 68.4 At5g15850 831442 COL1 (constans-like 1) Homologous to the flowering-time gene CONSTANS. O.I. C.G. H.G.
11.3 99.3 72.3 At1g07180 837229 NDA1 (ALTERNATIVE NAD(P)H DEHYDROGENASE 1) Internal NAD(P)H dehydrogenase in mitochondria. The predicted protein sequence has high homology with other designated NAD(P)H DHs from microorganisms; the capacity for matrix NAD(P)H oxidation via the rotenone-insensitive pathway is significantly reduced in the Atndi1 mutant plant line; the in vitro translation product of AtNDI1 is imported into isolated mitochondria and located on the inside of the inner membrane. O.I. C.G. H.G.
11.1 99.2 128.0 At1g08570 837379 ACHT4 (ATYPICAL CYS HIS RICH THIOREDOXIN 4) Encodes a member of the thioredoxin family protein. Located in the chloroplast. Shows high activity towards the chloroplast 2-Cys peroxiredoxin A, and poor activity towards the chloroplast NADP-malate dehydrogenase. O.I. C.G. H.G.
11.1 99.2 97.8 At1g02820 839304 late embryogenesis abundant 3 family protein / LEA3 family protein F:molecular_function unknown;P:embryonic development, response to stress;C:unknown;P O.I. C.G. H.G.
11.1 99.2 48.6 At2g32530 817814 ATCSLB03 encodes a gene similar to cellulose synthase O.I. C.G. H.G.
11.1 99.2 44.2 At2g40400 818633 unknown protein F:unknown;P:unknown;C:chloroplast thylakoid lumen;PBOM O.I. C.G. H.G.
11.0 99.2 83.2 At3g02380 821298 COL2 (constans-like 2) homologous to the flowering-time gene CONSTANS (CO) encoding zinc-finger proteins O.I. C.G. H.G.
10.9 99.2 58.5 At3g47430 823897 PEX11B member of the peroxin11 (PEX11) gene family, located on the peroxisome membrane, controls peroxisome proliferation. O.I. C.G. H.G.
10.8 99.2 79.7 At1g64780 842786 ATAMT1 encodes an ammonium transporter protein believed to act as a high affinity transporter. It is expressed in the root, primarily in endodermal and cortical cells, and contributes to ammonium uptake in the root. O.I. C.G. H.G.
10.6 99.2 42.1 At5g54130 835500 - - O.I. C.G. H.G.
10.5 99.2 93.5 At5g67370 836872 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;OBP O.I. C.G. H.G.
10.4 99.2 79.8 At3g17510 821016 CIPK1 (CBL-INTERACTING PROTEIN KINASE 1) Encodes a CBL-interacting protein kinase. Specifically interacts with ECT1 and ECT2. O.I. C.G. H.G.
10.4 99.2 39.4 At1g29430 839819 auxin-responsive family protein F:molecular_function unknown;P:response to auxin stimulus;C:unknown;P O.I. C.G. H.G.
10.3 99.2 58.0 At2g31750 817732 UGT74D1 (UDP-glucosyl transferase 74D1) F:transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity, abscisic acid glucosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:unknown;PMBVOF O.I. C.G. H.G.
10.2 99.2 9.4 At3g09600 820117 myb family transcription factor F:transcription factor activity, DNA binding;P:in 9 processes;C:chloroplast;PMOF O.I. C.G. H.G.
10.1 99.2 12.0 At5g06790 830569 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
10.0 99.2 78.4 At5g13740 831219 ZIF1 (ZINC INDUCED FACILITATOR 1) F:carbohydrate transmembrane transporter activity, tetracycline:hydrogen antiporter activity, sugar:hydrogen symporter activity;P:response to nematode;C:integral to membrane, membrane;BOFMAP O.I. C.G. H.G.
9.9 99.1 8.9 At3g16175 820863 thioesterase family protein F:hydrolase activity, acting on ester bonds, acyl-CoA thioesterase activity;P:biological_process unknown;C:cellular_component unknown;PMBFO O.I. C.G. H.G.
9.8 99.1 28.5 At3g04000 819555 short-chain dehydrogenase/reductase (SDR) family protein F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPAV O.I. C.G. H.G.
9.7 99.1 82.9 At4g19690 827713 IRT1 (iron-regulated transporter 1) Fe(II) transport protein (IRT1) O.I. C.G. H.G.
9.7 99.1 36.9 At5g57180 835824 CIA2 (CHLOROPLAST IMPORT APPARATUS 2) Transcription regulator responsible for specific upregulation of the translocon genes atToc33 and atToc75 in leaves. Involved in protein import into chloroplast. O.I. C.G. H.G.
9.6 99.1 22.1 At5g11260 830996 HY5 (ELONGATED HYPOCOTYL 5) Basic leucine zipper (bZIP) transcription factor. Nuclear localization. Involved in light-regulated transcriptional activation of G-box-containing promoters. Negatively regulated by Cop1. Although cytokinins do not appear to affect the gene's promoter activity, they appear to stabilize the protein. HY5 plays a role in anthocyanin accumulation in far-red light and blue light, but not in red light or in the dark. Mutant studies showed that the gene product is involved in the positive regulation of the PHYA-mediated inhibition of hypocotyl elongation. Binds to G- and Z-boxes, and other ACEs, but not to E-box. Loss of function mutation shows ABA resistant seedling phenotypes suggesting involvement for HY5 in mediating ABA responses. Binds to the promoter of ABI5 and regulates its expression. O.I. C.G. H.G.
9.4 99.1 39.2 At2g21320 816671 zinc finger (B-box type) family protein F:transcription factor activity, zinc ion binding;P:regulation of transcription;C:endomembrane system, intracellular;POM O.I. C.G. H.G.
9.4 99.1 18.8 At1g05170 839292 galactosyltransferase family protein F:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:protein amino acid glycosylation;C:membrane;MPO O.I. C.G. H.G.
9.3 99.1 51.6 At3g22530 821824 unknown protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;P O.I. C.G. H.G.
9.3 99.1 26.5 At4g34610 829613 BLH6 (BELL1-LIKE HOMEODOMAIN 6) F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent, regulation of transcription;C:nucleus;PMFOB O.I. C.G. H.G.
9.3 99.1 26.0 At1g53090 841743 SPA4 (SPA1-RELATED 4) Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA proteins function redundantly in suppressing photomorphogenesis in dark- and light-grown seedlings. SPA4 (and SPA3) predominantly regulates elongation growth in adult plants. O.I. C.G. H.G.
9.3 99.1 21.8 At2g15020 815991 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
9.2 99.1 72.0 At3g47420 823896 glycerol-3-phosphate transporter, putative / glycerol 3-phosphate permease, putative F:sugar:hydrogen symporter activity;P:carbohydrate transport;C:unknown;BFOMAP O.I. C.G. H.G.
9.2 99.1 51.3 At2g47490 819362 mitochondrial substrate carrier family protein F:transporter activity, binding;P:transport, mitochondrial transport;C:endomembrane system, mitochondrial inner membrane, membrane;MFPOV O.I. C.G. H.G.
9.0 99.1 58.1 At4g15550 827229 IAGLU (INDOLE-3-ACETATE BETA-D-GLUCOSYLTRANSFERASE) UDP-glucose:indole-3-acetate beta-D-glucosyltransferase O.I. C.G. H.G.
8.9 99.0 165.0 At1g62180 842514 APR2 (5'ADENYLYLPHOSPHOSULFATE REDUCTASE 2) encodes a adenosine 5'-phosphosulfate reductase, involved in sulfate assimilation. Is a major effect locus for natural variation of shoot sulfate content in Arabidopsis. O.I. C.G. H.G.
8.9 99.0 160.1 At5g64840 836607 ATGCN5 (A. THALIANA GENERAL CONTROL NON-REPRESSIBLE 5) member of GCN subfamily O.I. C.G. H.G.
8.9 99.0 132.1 At3g23000 821874 CIPK7 (CBL-INTERACTING PROTEIN KINASE 7) Encodes a serine/threonine protein kinase with similarities to CBL-interacting protein kinases, SNF1 and SOS2. O.I. C.G. H.G.
8.9 99.0 29.1 At5g19850 832105 hydrolase, alpha/beta fold family protein F:hydrolase activity;P:unknown;C:unknown;BOMPFA O.I. C.G. H.G.
8.9 99.0 13.1 At5g40380 834036 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA O.I. C.G. H.G.
8.8 99.0 80.9 At3g54500 824615 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFB O.I. C.G. H.G.
8.7 99.0 39.5 At2g27820 817329 PD1 (PREPHENATE DEHYDRATASE 1) Encodes a plastid-localized arogenate dehydratase involved in phenylalanine biosynthesis. Not less than six genes encoding ADT were identiﬁed in the Arabidopsis genome: ADT1 [At1g11790]; ADT2 [At3g07630]; ADT3 [At2g27820]; ADT4 [At3g44720]; ADT5 [At5g22630]; and ADT6 [At1g08250]. O.I. C.G. H.G.
8.7 99.0 9.2 At1g66840 843002 - F:unknown;P:biological_process unknown;C:unknown;MOBFPAV O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
68.2	99.9	38.6	At1g65870	842898	disease resistance-responsive family protein	F:molecular_function unknown;P:lignan biosynthetic process, defense response;C:cell wall;P	O.I.	C.G.	H.G.
51.2	99.8	74.9	At5g42760	834285	-	F:unknown;P:biological_process unknown;C:cellular_component unknown;BOAPMF	O.I.	C.G.	H.G.
46.7	99.8	19.4	At1g01520	839337	myb family transcription factor	F:transcription factor activity, DNA binding;P:response to salt stress, regulation of transcription, DNA-dependent;C:unknown;POM	O.I.	C.G.	H.G.
46.4	99.8	100.3	At5g52570	835334	BETA-OHASE 2 (BETA-CAROTENE HYDROXYLASE 2)	Converts β-carotene to zeaxanthin via cryptoxanthin.	O.I.	C.G.	H.G.
44.0	99.8	80.7	At5g23730	832438	nucleotide binding	F:nucleotide binding;P:unknown;C:CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex;MFBOPA	O.I.	C.G.	H.G.
40.9	99.8	35.4	At5g56860	835788	GNC (GATA, nitrate-inducible, carbon metabolism-involved)	F:transcription factor activity;P:glucose mediated signaling, regulation of nitrogen compound metabolic process;C:nucleus;FPOMB	O.I.	C.G.	H.G.
36.1	99.7	55.8	At3g17609	821027	HYH (HY5-HOMOLOG)	F:transcription factor activity, DNA binding;P:response to UV-B, anthocyanin metabolic process, regulation of transcription, DNA-dependent;C:nucleus;MPFO	O.I.	C.G.	H.G.
35.6	99.7	95.1	At5g58770	835991	dehydrodolichyl diphosphate synthase, putative / DEDOL-PP synthase, putative	F:dehydrodolichyl diphosphate synthase activity;P:dolichol biosynthetic process;C:chloroplast;OBAFMP	O.I.	C.G.	H.G.
32.5	99.7	29.6	At4g26150	828721	CGA1 (CYTOKININ-RESPONSIVE GATA FACTOR 1)	F:transcription factor activity;P:response to cytokinin stimulus;C:nucleus;FPOM	O.I.	C.G.	H.G.
29.2	99.7	126.9	At1g47400	841144	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
29.0	99.7	49.3	At3g21890	821744	zinc finger (B-box type) family protein	F:transcription factor activity, zinc ion binding;P:response to UV-B, regulation of transcription;C:intracellular;PO	O.I.	C.G.	H.G.
27.8	99.7	77.0	At2g24540	816990	AFR (ATTENUATED FAR-RED RESPONSE)	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPBOFVA	O.I.	C.G.	H.G.
26.9	99.7	83.1	At5g03555	831791	permease, cytosine/purines, uracil, thiamine, allantoin family protein	F:nucleobase transmembrane transporter activity;P:nucleobase, nucleoside, nucleotide and nucleic acid transport;C:membrane;BOFAPM	O.I.	C.G.	H.G.
26.3	99.7	60.6	At1g64500	842758	glutaredoxin family protein	F:electron carrier activity, protein disulfide oxidoreductase activity;P:N-terminal protein myristoylation, cell redox homeostasis;C:cellular_component unknown;PMBOF	O.I.	C.G.	H.G.
24.8	99.6	160.1	At1g55960	842047	-	F:molecular_function unknown;P:biological_process unknown;C:unknown;MPO	O.I.	C.G.	H.G.
23.7	99.6	25.8	At4g31940	829324	CYP82C4	member of CYP82C	O.I.	C.G.	H.G.
23.4	99.6	63.1	At5g47610	834811	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV	O.I.	C.G.	H.G.
23.1	99.6	59.4	At4g27030	828811	small conjugating protein ligase	F:small conjugating protein ligase activity;P:regulation of protein metabolic process, post-translational protein modification;C:chloroplast;MOPBV	O.I.	C.G.	H.G.
22.0	99.6	44.7	At2g27420	817287	cysteine proteinase, putative	F:cysteine-type peptidase activity, cysteine-type endopeptidase activity;P:proteolysis;C:endomembrane system;MOPBVAF	O.I.	C.G.	H.G.
20.9	99.6	207.8	At3g21670	821721	nitrate transporter (NTP3)	F:transporter activity;P:oligopeptide transport;C:membrane;BPMOF	O.I.	C.G.	H.G.
19.7	99.6	8.6	At4g36470	829799	S-adenosyl-L-methionine:carboxyl methyltransferase family protein	F:S-adenosylmethionine-dependent methyltransferase activity;P:biological_process unknown;C:cellular_component unknown;POBMF	O.I.	C.G.	H.G.
18.7	99.5	83.0	At5g24120	832477	SIGE (SIGMA FACTOR E)	Encodes a specialized sigma factor that functions in regulation of plastid genes and is responsible for the light-dependent transcription at the psbD LRP. Activation of SIG5 is dependent upon blue light and mediated by cryptochromes.	O.I.	C.G.	H.G.
18.3	99.5	102.0	At2g46830	819296	CCA1 (CIRCADIAN CLOCK ASSOCIATED 1)	Encodes a transcriptional repressor that performs overlapping functions with LHY in a regulatory feedback loop that is closely associated with the circadian oscillator of Arabidopsis. Binds to the evening element in the promoter of TOC1 and represses TOC1 transcription. CCA1 and LHY colocalize in the nucleus and form heterodimers in vivo. CCA1 and LHY function synergistically in regulating circadian rhythms of Arabidopsis.	O.I.	C.G.	H.G.
17.2	99.5	29.4	At1g18810	838463	phytochrome kinase substrate-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFBV	O.I.	C.G.	H.G.
16.2	99.5	174.7	At1g01060	839341	LHY (LATE ELONGATED HYPOCOTYL)	LHY encodes a myb-related putative transcription factor involved in circadian rhythm along with another myb transcription factor CCA1	O.I.	C.G.	H.G.
16.2	99.5	32.5	At5g24850	832554	CRY3 (cryptochrome 3)	Binds flavin adenine dinucleotide and DNA. It does not have photolyase activity, and it is likely to act as photoreceptor. Closely related to Synechocystis cryptochrome.	O.I.	C.G.	H.G.
16.2	99.5	30.1	At3g47640	823918	basic helix-loop-helix (bHLH) family protein	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus, chloroplast;PMO	O.I.	C.G.	H.G.
16.0	99.5	161.5	At1g32900	840184	starch synthase, putative	F:transferase activity, transferring glycosyl groups;P:biosynthetic process, glucan biosynthetic process;C:chloroplast;PBOAFM	O.I.	C.G.	H.G.
15.6	99.5	75.1	At1g42550	840860	PMI1 (PLASTID MOVEMENT IMPAIRED1)	Encodes a plant-specific protein of unknown function that appears to be conserved among angiosperms.	O.I.	C.G.	H.G.
15.6	99.5	52.4	At2g36630	818235	unknown protein	F:unknown;P:N-terminal protein myristoylation;C:endomembrane system, integral to membrane;BOPA	O.I.	C.G.	H.G.
15.5	99.5	60.0	At4g00050	828175	UNE10 (unfertilized embryo sac 10)	F:transcription factor activity, DNA binding;P:double fertilization forming a zygote and endosperm, regulation of transcription;C:nucleus;PMFO	O.I.	C.G.	H.G.
15.5	99.5	42.6	At1g78510	844187	SPS1 (solanesyl diphosphate synthase 1)	Encodes a protein with solanesyl diphosphate synthase activity.	O.I.	C.G.	H.G.
15.3	99.4	160.1	At3g56290	824796	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
15.0	99.4	27.2	At1g06180	837127	ATMYB13 (MYB DOMAIN PROTEIN 13)	member of MYB3R- and R2R3- type MYB- encoding genes	O.I.	C.G.	H.G.
14.9	99.4	33.6	At1g08250	837345	ADT6 (arogenate dehydratase 6)	Encodes a plastid-localized arogenate dehydratase involved in phenylalanine biosynthesis. Not less than six genes encoding ADT were identiﬁed in the Arabidopsis genome: ADT1 [At1g11790]; ADT2 [At3g07630]; ADT3 [At2g27820]; ADT4 [At3g44720]; ADT5 [At5g22630]; and ADT6 [At1g08250].	O.I.	C.G.	H.G.
14.6	99.4	93.4	At3g08730	820020	PK1 (PROTEIN-SERINE KINASE 1)	Encodes a protein-serine kinase that phosphorylates ribosomal protein in vitro. Activation of AtS6k is regulated by 1-naphthylacetic acid and kinetin, at least in part, via a lipid kinase-dependent pathway. Involved in translational up-regulation of ribosomal proteins. Phosphorylated by PDK1. Interacts with RAPTOR1, which in turn interacts with TOR. SPK6 activity is affected by osmotic stress, and plants overexpressing S6k1 are hypersensitive to osmotic stress. The gene is expressed in all tissues examined, with highest expression level detected in metabolically active tissues.	O.I.	C.G.	H.G.
14.5	99.4	26.1	At1g69160	843247	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFMV	O.I.	C.G.	H.G.
14.4	99.4	44.5	At4g24700	828572	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
13.9	99.4	37.3	At3g27350	822356	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MPOFB	O.I.	C.G.	H.G.
13.9	99.4	27.8	At2g19650	816484	DC1 domain-containing protein	F:unknown;P:intracellular signaling cascade;C:unknown;POM	O.I.	C.G.	H.G.
13.8	99.4	87.6	At5g18670	831985	BMY3	putative beta-amylase BMY3 (BMY3)	O.I.	C.G.	H.G.
13.6	99.4	72.4	At3g14770	820705	nodulin MtN3 family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, integral to membrane, membrane;PMO	O.I.	C.G.	H.G.
13.6	99.4	59.1	At1g17050	838275	SPS2 (Solanesyl diphosphate synthase 2)	Encodes a protein with solanesyl diphosphate synthase activity.	O.I.	C.G.	H.G.
13.0	99.4	81.4	At5g17050	831568	UGT78D2 (UDP-GLUCOSYL TRANSFERASE 78D2)	The At5g17050 encodes a anthocyanidin 3-O-glucosyltransferase which specifically glucosylates the 3-position of the flavonoid C-ring. Anthocyanidins such as cyanidin and pelargonidin as well as flavonols such as kaempferol and quercetin are accepted substrates.	O.I.	C.G.	H.G.
12.8	99.3	22.2	At1g19700	838558	BEL10 (BEL1-LIKE HOMEODOMAIN 10)	Encodes a member of the BEL family of homeodomain proteins. Its interaction with PLP (PAS/LOV PROTEIN) is diminished by blue light.	O.I.	C.G.	H.G.
12.6	99.3	64.3	At1g79270	844267	ECT8 (evolutionarily conserved C-terminal region 8)	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFO	O.I.	C.G.	H.G.
12.6	99.3	51.7	At2g01290	814657	ribose-5-phosphate isomerase	F:ribose-5-phosphate isomerase activity;P:glucose catabolic process to lactate and acetate, 5-phosphoribose 1-diphosphate biosynthetic process, reductive pentose-phosphate cycle, D-ribose catabolic process, pentose-phosphate shunt, non-oxidative branch;C:cytoplasm;BOAFMP	O.I.	C.G.	H.G.
12.6	99.3	44.1	At5g14760	831328	AO (L-ASPARTATE OXIDASE)	At5g14760 encodes for L-aspartate oxidase involved in the early steps of NAD biosynthesis. In contrary to the EC 1.4.3.16 (l-aspartate oxidase - deaminating) the enzyme catalyzes the reaction L-aspartate + O2 = iminoaspartate (alpha-iminosuccinate) + H2O2	O.I.	C.G.	H.G.
12.4	99.3	49.9	At3g29200	822573	CM1 (CHORISMATE MUTASE 1)	L-ascorbate peroxidase	O.I.	C.G.	H.G.
12.3	99.3	55.5	At4g28290	828944	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
12.2	99.3	99.4	At1g68440	843173	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPFB	O.I.	C.G.	H.G.
12.2	99.3	43.1	At1g60590	842353	polygalacturonase, putative / pectinase, putative	F:polygalacturonase activity;P:carbohydrate metabolic process;C:unknown;FPBMOVA	O.I.	C.G.	H.G.
12.1	99.3	15.7	At5g37550	833733	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
11.8	99.3	79.3	At2g41250	818724	haloacid dehalogenase-like hydrolase family protein	F:hydrolase activity, catalytic activity, phosphoglycolate phosphatase activity;P:metabolic process;C:mitochondrion;BOMAPF	O.I.	C.G.	H.G.
11.7	99.3	68.4	At5g15850	831442	COL1 (constans-like 1)	Homologous to the flowering-time gene CONSTANS.	O.I.	C.G.	H.G.
11.3	99.3	72.3	At1g07180	837229	NDA1 (ALTERNATIVE NAD(P)H DEHYDROGENASE 1)	Internal NAD(P)H dehydrogenase in mitochondria. The predicted protein sequence has high homology with other designated NAD(P)H DHs from microorganisms; the capacity for matrix NAD(P)H oxidation via the rotenone-insensitive pathway is significantly reduced in the Atndi1 mutant plant line; the in vitro translation product of AtNDI1 is imported into isolated mitochondria and located on the inside of the inner membrane.	O.I.	C.G.	H.G.
11.1	99.2	128.0	At1g08570	837379	ACHT4 (ATYPICAL CYS HIS RICH THIOREDOXIN 4)	Encodes a member of the thioredoxin family protein. Located in the chloroplast. Shows high activity towards the chloroplast 2-Cys peroxiredoxin A, and poor activity towards the chloroplast NADP-malate dehydrogenase.	O.I.	C.G.	H.G.
11.1	99.2	97.8	At1g02820	839304	late embryogenesis abundant 3 family protein / LEA3 family protein	F:molecular_function unknown;P:embryonic development, response to stress;C:unknown;P	O.I.	C.G.	H.G.
11.1	99.2	48.6	At2g32530	817814	ATCSLB03	encodes a gene similar to cellulose synthase	O.I.	C.G.	H.G.
11.1	99.2	44.2	At2g40400	818633	unknown protein	F:unknown;P:unknown;C:chloroplast thylakoid lumen;PBOM	O.I.	C.G.	H.G.
11.0	99.2	83.2	At3g02380	821298	COL2 (constans-like 2)	homologous to the flowering-time gene CONSTANS (CO) encoding zinc-finger proteins	O.I.	C.G.	H.G.
10.9	99.2	58.5	At3g47430	823897	PEX11B	member of the peroxin11 (PEX11) gene family, located on the peroxisome membrane, controls peroxisome proliferation.	O.I.	C.G.	H.G.
10.8	99.2	79.7	At1g64780	842786	ATAMT1	encodes an ammonium transporter protein believed to act as a high affinity transporter. It is expressed in the root, primarily in endodermal and cortical cells, and contributes to ammonium uptake in the root.	O.I.	C.G.	H.G.
10.6	99.2	42.1	At5g54130	835500	-	-	O.I.	C.G.	H.G.
10.5	99.2	93.5	At5g67370	836872	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;OBP	O.I.	C.G.	H.G.
10.4	99.2	79.8	At3g17510	821016	CIPK1 (CBL-INTERACTING PROTEIN KINASE 1)	Encodes a CBL-interacting protein kinase. Specifically interacts with ECT1 and ECT2.	O.I.	C.G.	H.G.
10.4	99.2	39.4	At1g29430	839819	auxin-responsive family protein	F:molecular_function unknown;P:response to auxin stimulus;C:unknown;P	O.I.	C.G.	H.G.
10.3	99.2	58.0	At2g31750	817732	UGT74D1 (UDP-glucosyl transferase 74D1)	F:transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity, abscisic acid glucosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:unknown;PMBVOF	O.I.	C.G.	H.G.
10.2	99.2	9.4	At3g09600	820117	myb family transcription factor	F:transcription factor activity, DNA binding;P:in 9 processes;C:chloroplast;PMOF	O.I.	C.G.	H.G.
10.1	99.2	12.0	At5g06790	830569	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
10.0	99.2	78.4	At5g13740	831219	ZIF1 (ZINC INDUCED FACILITATOR 1)	F:carbohydrate transmembrane transporter activity, tetracycline:hydrogen antiporter activity, sugar:hydrogen symporter activity;P:response to nematode;C:integral to membrane, membrane;BOFMAP	O.I.	C.G.	H.G.
9.9	99.1	8.9	At3g16175	820863	thioesterase family protein	F:hydrolase activity, acting on ester bonds, acyl-CoA thioesterase activity;P:biological_process unknown;C:cellular_component unknown;PMBFO	O.I.	C.G.	H.G.
9.8	99.1	28.5	At3g04000	819555	short-chain dehydrogenase/reductase (SDR) family protein	F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPAV	O.I.	C.G.	H.G.
9.7	99.1	82.9	At4g19690	827713	IRT1 (iron-regulated transporter 1)	Fe(II) transport protein (IRT1)	O.I.	C.G.	H.G.
9.7	99.1	36.9	At5g57180	835824	CIA2 (CHLOROPLAST IMPORT APPARATUS 2)	Transcription regulator responsible for specific upregulation of the translocon genes atToc33 and atToc75 in leaves. Involved in protein import into chloroplast.	O.I.	C.G.	H.G.
9.6	99.1	22.1	At5g11260	830996	HY5 (ELONGATED HYPOCOTYL 5)	Basic leucine zipper (bZIP) transcription factor. Nuclear localization. Involved in light-regulated transcriptional activation of G-box-containing promoters. Negatively regulated by Cop1. Although cytokinins do not appear to affect the gene's promoter activity, they appear to stabilize the protein. HY5 plays a role in anthocyanin accumulation in far-red light and blue light, but not in red light or in the dark. Mutant studies showed that the gene product is involved in the positive regulation of the PHYA-mediated inhibition of hypocotyl elongation. Binds to G- and Z-boxes, and other ACEs, but not to E-box. Loss of function mutation shows ABA resistant seedling phenotypes suggesting involvement for HY5 in mediating ABA responses. Binds to the promoter of ABI5 and regulates its expression.	O.I.	C.G.	H.G.
9.4	99.1	39.2	At2g21320	816671	zinc finger (B-box type) family protein	F:transcription factor activity, zinc ion binding;P:regulation of transcription;C:endomembrane system, intracellular;POM	O.I.	C.G.	H.G.
9.4	99.1	18.8	At1g05170	839292	galactosyltransferase family protein	F:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:protein amino acid glycosylation;C:membrane;MPO	O.I.	C.G.	H.G.
9.3	99.1	51.6	At3g22530	821824	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;P	O.I.	C.G.	H.G.
9.3	99.1	26.5	At4g34610	829613	BLH6 (BELL1-LIKE HOMEODOMAIN 6)	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent, regulation of transcription;C:nucleus;PMFOB	O.I.	C.G.	H.G.
9.3	99.1	26.0	At1g53090	841743	SPA4 (SPA1-RELATED 4)	Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA proteins function redundantly in suppressing photomorphogenesis in dark- and light-grown seedlings. SPA4 (and SPA3) predominantly regulates elongation growth in adult plants.	O.I.	C.G.	H.G.
9.3	99.1	21.8	At2g15020	815991	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
9.2	99.1	72.0	At3g47420	823896	glycerol-3-phosphate transporter, putative / glycerol 3-phosphate permease, putative	F:sugar:hydrogen symporter activity;P:carbohydrate transport;C:unknown;BFOMAP	O.I.	C.G.	H.G.
9.2	99.1	51.3	At2g47490	819362	mitochondrial substrate carrier family protein	F:transporter activity, binding;P:transport, mitochondrial transport;C:endomembrane system, mitochondrial inner membrane, membrane;MFPOV	O.I.	C.G.	H.G.
9.0	99.1	58.1	At4g15550	827229	IAGLU (INDOLE-3-ACETATE BETA-D-GLUCOSYLTRANSFERASE)	UDP-glucose:indole-3-acetate beta-D-glucosyltransferase	O.I.	C.G.	H.G.
8.9	99.0	165.0	At1g62180	842514	APR2 (5'ADENYLYLPHOSPHOSULFATE REDUCTASE 2)	encodes a adenosine 5'-phosphosulfate reductase, involved in sulfate assimilation. Is a major effect locus for natural variation of shoot sulfate content in Arabidopsis.	O.I.	C.G.	H.G.
8.9	99.0	160.1	At5g64840	836607	ATGCN5 (A. THALIANA GENERAL CONTROL NON-REPRESSIBLE 5)	member of GCN subfamily	O.I.	C.G.	H.G.
8.9	99.0	132.1	At3g23000	821874	CIPK7 (CBL-INTERACTING PROTEIN KINASE 7)	Encodes a serine/threonine protein kinase with similarities to CBL-interacting protein kinases, SNF1 and SOS2.	O.I.	C.G.	H.G.
8.9	99.0	29.1	At5g19850	832105	hydrolase, alpha/beta fold family protein	F:hydrolase activity;P:unknown;C:unknown;BOMPFA	O.I.	C.G.	H.G.
8.9	99.0	13.1	At5g40380	834036	protein kinase family protein	F:kinase activity;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA	O.I.	C.G.	H.G.
8.8	99.0	80.9	At3g54500	824615	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFB	O.I.	C.G.	H.G.
8.7	99.0	39.5	At2g27820	817329	PD1 (PREPHENATE DEHYDRATASE 1)	Encodes a plastid-localized arogenate dehydratase involved in phenylalanine biosynthesis. Not less than six genes encoding ADT were identiﬁed in the Arabidopsis genome: ADT1 [At1g11790]; ADT2 [At3g07630]; ADT3 [At2g27820]; ADT4 [At3g44720]; ADT5 [At5g22630]; and ADT6 [At1g08250].	O.I.	C.G.	H.G.
8.7	99.0	9.2	At1g66840	843002	-	F:unknown;P:biological_process unknown;C:unknown;MOBFPAV	O.I.	C.G.	H.G.

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GSM ID	GSM142663
Assay name	NE001_ATH1_A1-Evans-w20
GSE experiment	GSE6154: Molecular basis of respiratory burst-mediated thermotolerance in Arabidopsis

Microarray experiments to specifically-expressed genes

GSM ID GSM142663 Assay name NE001_ATH1_A1-Evans-w20 GSE experiment GSE6154: Molecular basis of respiratory burst-mediated thermotolerance in Arabidopsis

GSM ID GSM142663

Assay name NE001_ATH1_A1-Evans-w20

GSE experiment GSE6154: Molecular basis of respiratory burst-mediated thermotolerance in Arabidopsis