CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM142655

Assay name MC002_ATH1_A11.3-dubos-mxh

GSE experiment GSE6151: The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
355.0 100.0 120.9 At4g10310 826623 HKT1 (HIGH-AFFINITY K+ TRANSPORTER 1) encodes a sodium transporter (HKT1) expressed in xylem parenchyma cells. Mutants over-accumulate sodium in shoot tissue and have increased sodium in the xylem sap and reduced sodium in phloem sap and roots. O.I. C.G. H.G.
249.3 100.0 136.1 At3g28360 822465 PGP16 (P-GLYCOPROTEIN 16) F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:integral to membrane;BOMAFPV O.I. C.G. H.G.
245.0 100.0 132.1 At5g17350 831601 unknown protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;P O.I. C.G. H.G.
228.9 100.0 160.6 At2g14210 815907 AGL44 (AGAMOUS-LIKE 44) MADS box gene, transcription factor O.I. C.G. H.G.
201.6 100.0 341.2 At5g65040 836628 senescence-associated protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
199.7 100.0 53.0 At5g58680 835982 armadillo/beta-catenin repeat family protein F:binding;P:biological_process unknown;C:cellular_component unknown;MPOFB O.I. C.G. H.G.
141.8 99.9 41.8 At3g29670 822645 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFO O.I. C.G. H.G.
137.0 99.9 308.7 At1g12200 837773 flavin-containing monooxygenase family protein / FMO family protein F:NADP or NADPH binding, monooxygenase activity, FAD binding, flavin-containing monooxygenase activity;P:biological_process unknown;C:cellular_component unknown;BOMFPA O.I. C.G. H.G.
130.0 99.9 155.6 At3g05950 819765 germin-like protein, putative F:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PFBO O.I. C.G. H.G.
109.3 99.9 234.2 At3g23250 821904 MYB15 (MYB DOMAIN PROTEIN 15) Member of the R2R3 factor gene family. O.I. C.G. H.G.
109.1 99.9 128.0 At5g49520 835012 WRKY48 member of WRKY Transcription Factor; Group II-c O.I. C.G. H.G.
106.0 99.9 135.0 At2g41010 818701 ATCAMBP25 (ARABIDOPSIS THALIANA CALMODULIN (CAM)-BINDING PROTEIN OF 25 KDA) Encodes a novel calmodulin binding protein whose gene expression is induced by dehydration and ionic (salt) and non-ionic (mannitol) osmotic stress. Lines over-expressing this gene are more sensitive and anti-sense lines are more tolerant to osmotic stress, suggesting this gene may be a negative regulator of response to osmotic stress. O.I. C.G. H.G.
103.4 99.9 197.6 At5g22250 832285 CCR4-NOT transcription complex protein, putative F:ribonuclease activity, nucleic acid binding;P:RNA modification;C:nucleus;PMOF O.I. C.G. H.G.
100.3 99.9 17.4 At3g28620 822492 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVB O.I. C.G. H.G.
93.5 99.9 119.1 At5g60450 836166 ARF4 (AUXIN RESPONSE FACTOR 4) Encodes a member of the ARF family of transcription factors which mediate auxin responses. ARF4 appears to have redundant function with ETT(ARF3) in specifying abaxial cell identity. O.I. C.G. H.G.
91.4 99.9 103.1 At1g49230 841346 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV O.I. C.G. H.G.
90.8 99.9 42.3 At2g44990 819107 CCD7 (CAROTENOID CLEAVAGE DIOXYGENASE 7) More Axillary Branching; carotenoid cleavage dioxygenases. O.I. C.G. H.G.
88.6 99.9 183.5 At1g73540 843688 atnudt21 (Arabidopsis thaliana Nudix hydrolase homolog 21) F:hydrolase activity;P:biological_process unknown;C:chloroplast;BMPOFA O.I. C.G. H.G.
88.0 99.9 165.2 At3g05690 819738 NF-YA2 (NUCLEAR FACTOR Y, SUBUNIT A2) Encodes a subunit of CCAAT-binding complex, binds to CCAAT box motif present in some plant promoter sequences. One of three members of this class (HAP2A, HAP2B, HAP2C), it is expressed in vegetative and reproductive tissues. O.I. C.G. H.G.
87.6 99.9 38.0 At4g37970 829953 CAD6 (CINNAMYL ALCOHOL DEHYDROGENASE 6) F:oxidoreductase activity, binding, catalytic activity, zinc ion binding;P:oxidation reduction, metabolic process;C:cellular_component unknown;BOPFMAV O.I. C.G. H.G.
83.8 99.9 121.4 At4g30460 829169 glycine-rich protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MBOPFVA O.I. C.G. H.G.
83.1 99.9 229.1 At4g27652 828877 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
83.0 99.9 138.5 At4g27654 828878 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
80.9 99.9 215.9 At3g44260 823551 CCR4-NOT transcription complex protein, putative F:ribonuclease activity, nucleic acid binding;P:response to biotic stimulus, response to wounding, RNA modification;C:nucleus;MPOF O.I. C.G. H.G.
80.4 99.9 61.3 At2g20550 816577 DNAJ chaperone C-terminal domain-containing protein F:unfolded protein binding;P:protein folding;C:cellular_component unknown;BOMFPAV O.I. C.G. H.G.
77.1 99.9 19.1 At4g13820 827016 disease resistance family protein / LRR family protein F:protein binding, kinase activity;P:signal transduction;C:endomembrane system;PMOBFAV O.I. C.G. H.G.
76.6 99.9 60.4 At3g25710 822159 BHLH32 (BASIC HELIX-LOOP-HELIX 32) F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFO O.I. C.G. H.G.
76.4 99.9 200.5 At4g12280 826837 copper amine oxidase family protein F:amine oxidase activity, quinone binding, copper ion binding;P:cellular amine metabolic process;C:cellular_component unknown;FBMOPA O.I. C.G. H.G.
75.4 99.9 43.6 At4g25434 828648 ATNUDT10 (Arabidopsis thaliana Nudix hydrolase homolog 10) F:ADP-ribose diphosphatase activity, NAD or NADH binding, catalytic activity;P:metabolic process;C:unknown;BOMPAF O.I. C.G. H.G.
74.1 99.9 51.3 At1g78815 844218 LSH7 (LIGHT SENSITIVE HYPOCOTYLS 7) F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PM O.I. C.G. H.G.
72.4 99.9 72.6 At1g77380 844074 AAP3 Amino acid permease which transports basic amino acids. O.I. C.G. H.G.
69.6 99.9 146.9 At3g62260 825399 protein phosphatase 2C, putative / PP2C, putative F:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation;C:protein serine/threonine phosphatase complex;MPOFBVA O.I. C.G. H.G.
68.9 99.9 57.0 At5g58120 835924 disease resistance protein (TIR-NBS-LRR class), putative F:transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFA O.I. C.G. H.G.
68.7 99.9 131.7 At1g20160 838606 ATSBT5.2 F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:apoplast;BPOFMA O.I. C.G. H.G.
67.0 99.8 68.1 At3g63110 825486 ATIPT3 (ARABIDOPSIS THALIANA ISOPENTENYLTRANSFERASE 3) Encodes cytokinin synthase involved in cytokinin biosynthesis. IPT3 subcellular localization is modulated by farnesylation- when farnesylated it is localized to the nucleus, otherwise to the chloroplast. O.I. C.G. H.G.
66.3 99.8 142.2 At3g29970 822700 germination protein-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
63.5 99.8 130.0 At4g29100 829031 ethylene-responsive family protein F:transcription factor activity;P:regulation of transcription;C:nucleus;OPMF O.I. C.G. H.G.
63.3 99.8 47.4 At3g10120 820175 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
62.4 99.8 88.6 At1g01070 839550 nodulin MtN21 family protein F:unknown;P:unknown;C:membrane;BPOAFM O.I. C.G. H.G.
62.0 99.8 235.1 At1g18880 838469 proton-dependent oligopeptide transport (POT) family protein F:transporter activity;P:oligopeptide transport;C:membrane;PMBFO O.I. C.G. H.G.
61.7 99.8 239.9 At1g18740 838456 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PA O.I. C.G. H.G.
60.4 99.8 95.1 At2g48010 819413 RKF3 (RECEPTOR-LIKE KINASE IN IN FLOWERS 3) receptor-like serine/threonine kinase (RKF3) O.I. C.G. H.G.
58.2 99.8 157.3 At2g42760 818876 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOF O.I. C.G. H.G.
57.9 99.8 124.3 At5g16570 831519 GLN1 Encodes a cytosolic glutamine synthetase, the enzyme has high affinity with substrate ammonium O.I. C.G. H.G.
56.0 99.8 154.8 At2g18050 816317 HIS1-3 (HISTONE H1-3) encodes a structurally divergent linker histone whose gene expression is induced by dehydration and ABA. O.I. C.G. H.G.
55.9 99.8 93.7 At1g72830 843614 NF-YA3 (NUCLEAR FACTOR Y, SUBUNIT A3) Encodes a subunit of CCAAT-binding complex, binds to CCAAT box motif present in some plant promoter sequences. One of three members of this class (HAP2A, HAP2B, HAP2C), it is expressed in vegetative and reproductive tissues. O.I. C.G. H.G.
55.8 99.8 188.1 At1g74450 843786 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
55.8 99.8 168.4 At2g33770 817943 PHO2 (PHOSPHATE 2) Encodes a ubiquitin-conjugating E2 enzyme. UBC24 mRNA accumulation is suppressed by miR399f, miR399b and miR399c. Involved in phosphate starvation response. O.I. C.G. H.G.
55.7 99.8 34.2 At5g64530 836574 XND1 F:transcription factor activity;P:multicellular organismal development, shoot development, xylem histogenesis, programmed cell death;C:cellular_component unknown;P O.I. C.G. H.G.
55.6 99.8 100.0 At1g78780 844214 pathogenesis-related family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBFM O.I. C.G. H.G.
55.0 99.8 163.3 At3g44720 823601 ADT4 (arogenate dehydratase 4) Encodes a plastid-localized arogenate dehydratase involved in phenylalanine biosynthesis. Not less than six genes encoding ADT were identiﬁed in the Arabidopsis genome: ADT1 [At1g11790]; ADT2 [At3g07630]; ADT3 [At2g27820]; ADT4 [At3g44720]; ADT5 [At5g22630]; and ADT6 [At1g08250]. O.I. C.G. H.G.
54.3 99.8 47.1 At4g00940 827952 Dof-type zinc finger domain-containing protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;POM O.I. C.G. H.G.
54.1 99.8 63.6 At1g30760 839958 FAD-binding domain-containing protein F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;BFPOAM O.I. C.G. H.G.
54.1 99.8 54.8 At1g12940 837852 ATNRT2.5 (nitrate transporter2.5) member of High affinity nitrate transporter family O.I. C.G. H.G.
54.0 99.8 161.5 At1g17380 838310 JAZ5 (JASMONATE-ZIM-DOMAIN PROTEIN 5) F:molecular_function unknown;P:response to jasmonic acid stimulus;C:cellular_component unknown;P O.I. C.G. H.G.
53.7 99.8 133.4 At1g28370 839733 ERF11 (ERF DOMAIN PROTEIN 11) encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and leafy petiole. O.I. C.G. H.G.
53.6 99.8 66.3 At1g68810 843213 basic helix-loop-helix (bHLH) family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFOB O.I. C.G. H.G.
53.4 99.8 192.4 At3g61190 825291 BAP1 (BON ASSOCIATION PROTEIN 1) Encodes a protein with a C2 domain that binds to BON1 in yeast two hybrid analyses. Its ability to bind to phospholipids is enhanced by calcium ions. Involved in maintaining cell homeostasis. O.I. C.G. H.G.
53.2 99.8 195.7 At3g15210 820752 ERF4 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 4) Encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (ATERF-4). The protein contains one AP2 domain. Acts as a negative regulator of JA-responsive defense gene expression and resistance to the necrotrophic fungal pathogen Fusarium oxysporum and antagonizes JA inhibition of root elongation. O.I. C.G. H.G.
53.0 99.8 13.7 At1g70920 843431 ATHB18 (Arabidopsis thaliana homeobox-leucine zipper protein 18) F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent, regulation of transcription;C:nucleus, chloroplast;MPOFV O.I. C.G. H.G.
52.8 99.8 64.0 At4g14580 827106 CIPK4 (CBL-interacting protein kinase 4) CBL-interacting protein kinase O.I. C.G. H.G.
51.8 99.8 224.9 At5g59550 836074 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:response to chitin;C:unknown;PMOFVB O.I. C.G. H.G.
51.8 99.8 175.5 At5g51190 835193 AP2 domain-containing transcription factor, putative encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5. O.I. C.G. H.G.
51.1 99.8 42.0 At5g44350 834461 ethylene-responsive nuclear protein -related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POB O.I. C.G. H.G.
50.8 99.8 92.1 At5g38710 833862 proline oxidase, putative / osmotic stress-responsive proline dehydrogenase, putative F:proline dehydrogenase activity;P:proline catabolic process, glutamate biosynthetic process;C:unknown;BOMFPVA O.I. C.G. H.G.
50.1 99.8 14.8 At3g43930 823509 - F:molecular_function unknown;P:biological_process unknown;C:intracellular;MFPO O.I. C.G. H.G.
50.0 99.8 87.7 At2g25250 817063 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
49.7 99.8 143.6 At3g19580 821495 AZF2 (ARABIDOPSIS ZINC-FINGER PROTEIN 2) Encodes zinc finger protein. mRNA levels are upregulated in response to ABA, high salt, and mild dessication. The protein is localized to the nucleus and acts as a transcriptional repressor. O.I. C.G. H.G.
49.3 99.8 67.1 At1g58420 842211 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
48.9 99.8 109.8 At1g66500 842968 zinc finger (C2H2-type) family protein F:zinc ion binding;P:biological_process unknown;C:intracellular;MFOP O.I. C.G. H.G.
48.7 99.8 122.0 At4g35480 829700 RHA3B Encodes a putative RING-H2 finger protein RHA3b. O.I. C.G. H.G.
47.3 99.8 94.4 At1g49320 841355 BURP domain-containing protein F:molecular_function unknown;P:unknown;C:endomembrane system;P O.I. C.G. H.G.
46.9 99.8 31.6 At3g24310 822019 MYB305 (myb domain protein 305) snapdragon myb protein 305 homolog (myb) O.I. C.G. H.G.
46.5 99.8 233.7 At4g34410 829591 RRTF1 ({REDOX RESPONSIVE TRANSCRIPTION FACTOR 1) encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5. O.I. C.G. H.G.
46.5 99.8 37.2 At5g56460 835747 protein kinase, putative F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:plasma membrane;MPOBFVA O.I. C.G. H.G.
46.3 99.8 136.1 At1g61340 842428 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
46.1 99.8 154.8 At1g22160 838821 senescence-associated protein-related F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
46.0 99.8 43.1 At2g45680 819176 TCP family transcription factor, putative F:transcription factor activity;P:regulation of transcription;C:nucleus;OPMFB O.I. C.G. H.G.
45.8 99.8 278.8 At4g24570 828559 mitochondrial substrate carrier family protein F:binding;P:transport, mitochondrial transport;C:mitochondrial inner membrane, membrane;MFPO O.I. C.G. H.G.
45.6 99.8 47.7 At1g17590 838335 NF-YA8 (NUCLEAR FACTOR Y, SUBUNIT A8) F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:CCAAT-binding factor complex, nucleus, chloroplast;PMFOB O.I. C.G. H.G.
45.4 99.8 113.4 At5g40960 834098 unknown protein F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;P O.I. C.G. H.G.
45.2 99.8 89.5 At3g27210 822340 unknown protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:plasma membrane;MPOBF O.I. C.G. H.G.
44.3 99.8 20.7 At5g06510 830539 NF-YA10 (NUCLEAR FACTOR Y, SUBUNIT A10) F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:CCAAT-binding factor complex, nucleus;PMFO O.I. C.G. H.G.
43.5 99.8 14.1 At5g19040 832023 IPT5 Encodes cytokinin synthase. O.I. C.G. H.G.
42.4 99.8 70.3 At3g16720 820924 ATL2 RING-H2 protein induced after exposure to chitin or inactivated crude cellulase preparations. O.I. C.G. H.G.
42.3 99.8 76.2 At1g61660 842462 basic helix-loop-helix (bHLH) family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMOBF O.I. C.G. H.G.
42.0 99.8 24.0 At1g55610 842010 BRL1 (BRI 1 LIKE) mutant has Altered vascular cell differentiation; LRR Receptor Kinase O.I. C.G. H.G.
41.2 99.8 136.6 At1g52150 841645 ATHB-15 Member of the class III HD-ZIP protein family. Contains homeodomain and leucine zipper domain. Critical for vascular development and negatively regulates vascular cell differentiation. O.I. C.G. H.G.
41.1 99.8 124.0 At3g49530 824115 anac062 (Arabidopsis NAC domain containing protein 62) F:transcription factor activity;P:multicellular organismal development, response to chitin;C:cellular_component unknown;P O.I. C.G. H.G.
41.1 99.8 52.4 At1g67880 843116 glycosyl transferase family 17 protein F:transferase activity, transferring glycosyl groups, acetylglucosaminyltransferase activity;P:protein amino acid N-linked glycosylation;C:membrane;OPMFBV O.I. C.G. H.G.
41.1 99.8 41.8 At4g16000 827284 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
41.0 99.8 61.2 At2g22680 816799 zinc finger (C3HC4-type RING finger) family protein F:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:unknown;C:unknown;PBOMFA O.I. C.G. H.G.
40.8 99.8 76.7 At1g34300 840330 lectin protein kinase family protein F:in 6 functions;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA O.I. C.G. H.G.
40.7 99.8 91.9 At5g49660 835028 leucine-rich repeat transmembrane protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
40.0 99.8 144.9 At3g21710 821725 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
39.6 99.8 114.9 At1g25530 839139 lysine and histidine specific transporter, putative F:amino acid transmembrane transporter activity;P:amino acid transport;C:membrane;PMFOBA O.I. C.G. H.G.
39.3 99.8 36.3 At4g39720 830127 VQ motif-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPMF O.I. C.G. H.G.
39.1 99.8 28.3 At3g54430 824609 SRS6 (SHI-RELATED SEQUENCE 6) A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis. O.I. C.G. H.G.
39.0 99.8 200.9 At2g33310 817894 IAA13 Auxin induced gene, IAA13 (IAA13). O.I. C.G. H.G.
38.6 99.8 34.4 At5g59530 836072 2-oxoglutarate-dependent dioxygenase, putative F:transferase activity, transferring glycosyl groups;P:unknown;C:unknown;POBFM O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
355.0	100.0	120.9	At4g10310	826623	HKT1 (HIGH-AFFINITY K+ TRANSPORTER 1)	encodes a sodium transporter (HKT1) expressed in xylem parenchyma cells. Mutants over-accumulate sodium in shoot tissue and have increased sodium in the xylem sap and reduced sodium in phloem sap and roots.	O.I.	C.G.	H.G.
249.3	100.0	136.1	At3g28360	822465	PGP16 (P-GLYCOPROTEIN 16)	F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:integral to membrane;BOMAFPV	O.I.	C.G.	H.G.
245.0	100.0	132.1	At5g17350	831601	unknown protein	F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;P	O.I.	C.G.	H.G.
228.9	100.0	160.6	At2g14210	815907	AGL44 (AGAMOUS-LIKE 44)	MADS box gene, transcription factor	O.I.	C.G.	H.G.
201.6	100.0	341.2	At5g65040	836628	senescence-associated protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
199.7	100.0	53.0	At5g58680	835982	armadillo/beta-catenin repeat family protein	F:binding;P:biological_process unknown;C:cellular_component unknown;MPOFB	O.I.	C.G.	H.G.
141.8	99.9	41.8	At3g29670	822645	transferase family protein	F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFO	O.I.	C.G.	H.G.
137.0	99.9	308.7	At1g12200	837773	flavin-containing monooxygenase family protein / FMO family protein	F:NADP or NADPH binding, monooxygenase activity, FAD binding, flavin-containing monooxygenase activity;P:biological_process unknown;C:cellular_component unknown;BOMFPA	O.I.	C.G.	H.G.
130.0	99.9	155.6	At3g05950	819765	germin-like protein, putative	F:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PFBO	O.I.	C.G.	H.G.
109.3	99.9	234.2	At3g23250	821904	MYB15 (MYB DOMAIN PROTEIN 15)	Member of the R2R3 factor gene family.	O.I.	C.G.	H.G.
109.1	99.9	128.0	At5g49520	835012	WRKY48	member of WRKY Transcription Factor; Group II-c	O.I.	C.G.	H.G.
106.0	99.9	135.0	At2g41010	818701	ATCAMBP25 (ARABIDOPSIS THALIANA CALMODULIN (CAM)-BINDING PROTEIN OF 25 KDA)	Encodes a novel calmodulin binding protein whose gene expression is induced by dehydration and ionic (salt) and non-ionic (mannitol) osmotic stress. Lines over-expressing this gene are more sensitive and anti-sense lines are more tolerant to osmotic stress, suggesting this gene may be a negative regulator of response to osmotic stress.	O.I.	C.G.	H.G.
103.4	99.9	197.6	At5g22250	832285	CCR4-NOT transcription complex protein, putative	F:ribonuclease activity, nucleic acid binding;P:RNA modification;C:nucleus;PMOF	O.I.	C.G.	H.G.
100.3	99.9	17.4	At3g28620	822492	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVB	O.I.	C.G.	H.G.
93.5	99.9	119.1	At5g60450	836166	ARF4 (AUXIN RESPONSE FACTOR 4)	Encodes a member of the ARF family of transcription factors which mediate auxin responses. ARF4 appears to have redundant function with ETT(ARF3) in specifying abaxial cell identity.	O.I.	C.G.	H.G.
91.4	99.9	103.1	At1g49230	841346	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV	O.I.	C.G.	H.G.
90.8	99.9	42.3	At2g44990	819107	CCD7 (CAROTENOID CLEAVAGE DIOXYGENASE 7)	More Axillary Branching; carotenoid cleavage dioxygenases.	O.I.	C.G.	H.G.
88.6	99.9	183.5	At1g73540	843688	atnudt21 (Arabidopsis thaliana Nudix hydrolase homolog 21)	F:hydrolase activity;P:biological_process unknown;C:chloroplast;BMPOFA	O.I.	C.G.	H.G.
88.0	99.9	165.2	At3g05690	819738	NF-YA2 (NUCLEAR FACTOR Y, SUBUNIT A2)	Encodes a subunit of CCAAT-binding complex, binds to CCAAT box motif present in some plant promoter sequences. One of three members of this class (HAP2A, HAP2B, HAP2C), it is expressed in vegetative and reproductive tissues.	O.I.	C.G.	H.G.
87.6	99.9	38.0	At4g37970	829953	CAD6 (CINNAMYL ALCOHOL DEHYDROGENASE 6)	F:oxidoreductase activity, binding, catalytic activity, zinc ion binding;P:oxidation reduction, metabolic process;C:cellular_component unknown;BOPFMAV	O.I.	C.G.	H.G.
83.8	99.9	121.4	At4g30460	829169	glycine-rich protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MBOPFVA	O.I.	C.G.	H.G.
83.1	99.9	229.1	At4g27652	828877	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
83.0	99.9	138.5	At4g27654	828878	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
80.9	99.9	215.9	At3g44260	823551	CCR4-NOT transcription complex protein, putative	F:ribonuclease activity, nucleic acid binding;P:response to biotic stimulus, response to wounding, RNA modification;C:nucleus;MPOF	O.I.	C.G.	H.G.
80.4	99.9	61.3	At2g20550	816577	DNAJ chaperone C-terminal domain-containing protein	F:unfolded protein binding;P:protein folding;C:cellular_component unknown;BOMFPAV	O.I.	C.G.	H.G.
77.1	99.9	19.1	At4g13820	827016	disease resistance family protein / LRR family protein	F:protein binding, kinase activity;P:signal transduction;C:endomembrane system;PMOBFAV	O.I.	C.G.	H.G.
76.6	99.9	60.4	At3g25710	822159	BHLH32 (BASIC HELIX-LOOP-HELIX 32)	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFO	O.I.	C.G.	H.G.
76.4	99.9	200.5	At4g12280	826837	copper amine oxidase family protein	F:amine oxidase activity, quinone binding, copper ion binding;P:cellular amine metabolic process;C:cellular_component unknown;FBMOPA	O.I.	C.G.	H.G.
75.4	99.9	43.6	At4g25434	828648	ATNUDT10 (Arabidopsis thaliana Nudix hydrolase homolog 10)	F:ADP-ribose diphosphatase activity, NAD or NADH binding, catalytic activity;P:metabolic process;C:unknown;BOMPAF	O.I.	C.G.	H.G.
74.1	99.9	51.3	At1g78815	844218	LSH7 (LIGHT SENSITIVE HYPOCOTYLS 7)	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PM	O.I.	C.G.	H.G.
72.4	99.9	72.6	At1g77380	844074	AAP3	Amino acid permease which transports basic amino acids.	O.I.	C.G.	H.G.
69.6	99.9	146.9	At3g62260	825399	protein phosphatase 2C, putative / PP2C, putative	F:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation;C:protein serine/threonine phosphatase complex;MPOFBVA	O.I.	C.G.	H.G.
68.9	99.9	57.0	At5g58120	835924	disease resistance protein (TIR-NBS-LRR class), putative	F:transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFA	O.I.	C.G.	H.G.
68.7	99.9	131.7	At1g20160	838606	ATSBT5.2	F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:apoplast;BPOFMA	O.I.	C.G.	H.G.
67.0	99.8	68.1	At3g63110	825486	ATIPT3 (ARABIDOPSIS THALIANA ISOPENTENYLTRANSFERASE 3)	Encodes cytokinin synthase involved in cytokinin biosynthesis. IPT3 subcellular localization is modulated by farnesylation- when farnesylated it is localized to the nucleus, otherwise to the chloroplast.	O.I.	C.G.	H.G.
66.3	99.8	142.2	At3g29970	822700	germination protein-related	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
63.5	99.8	130.0	At4g29100	829031	ethylene-responsive family protein	F:transcription factor activity;P:regulation of transcription;C:nucleus;OPMF	O.I.	C.G.	H.G.
63.3	99.8	47.4	At3g10120	820175	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
62.4	99.8	88.6	At1g01070	839550	nodulin MtN21 family protein	F:unknown;P:unknown;C:membrane;BPOAFM	O.I.	C.G.	H.G.
62.0	99.8	235.1	At1g18880	838469	proton-dependent oligopeptide transport (POT) family protein	F:transporter activity;P:oligopeptide transport;C:membrane;PMBFO	O.I.	C.G.	H.G.
61.7	99.8	239.9	At1g18740	838456	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;PA	O.I.	C.G.	H.G.
60.4	99.8	95.1	At2g48010	819413	RKF3 (RECEPTOR-LIKE KINASE IN IN FLOWERS 3)	receptor-like serine/threonine kinase (RKF3)	O.I.	C.G.	H.G.
58.2	99.8	157.3	At2g42760	818876	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOF	O.I.	C.G.	H.G.
57.9	99.8	124.3	At5g16570	831519	GLN1	Encodes a cytosolic glutamine synthetase, the enzyme has high affinity with substrate ammonium	O.I.	C.G.	H.G.
56.0	99.8	154.8	At2g18050	816317	HIS1-3 (HISTONE H1-3)	encodes a structurally divergent linker histone whose gene expression is induced by dehydration and ABA.	O.I.	C.G.	H.G.
55.9	99.8	93.7	At1g72830	843614	NF-YA3 (NUCLEAR FACTOR Y, SUBUNIT A3)	Encodes a subunit of CCAAT-binding complex, binds to CCAAT box motif present in some plant promoter sequences. One of three members of this class (HAP2A, HAP2B, HAP2C), it is expressed in vegetative and reproductive tissues.	O.I.	C.G.	H.G.
55.8	99.8	188.1	At1g74450	843786	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
55.8	99.8	168.4	At2g33770	817943	PHO2 (PHOSPHATE 2)	Encodes a ubiquitin-conjugating E2 enzyme. UBC24 mRNA accumulation is suppressed by miR399f, miR399b and miR399c. Involved in phosphate starvation response.	O.I.	C.G.	H.G.
55.7	99.8	34.2	At5g64530	836574	XND1	F:transcription factor activity;P:multicellular organismal development, shoot development, xylem histogenesis, programmed cell death;C:cellular_component unknown;P	O.I.	C.G.	H.G.
55.6	99.8	100.0	At1g78780	844214	pathogenesis-related family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBFM	O.I.	C.G.	H.G.
55.0	99.8	163.3	At3g44720	823601	ADT4 (arogenate dehydratase 4)	Encodes a plastid-localized arogenate dehydratase involved in phenylalanine biosynthesis. Not less than six genes encoding ADT were identiﬁed in the Arabidopsis genome: ADT1 [At1g11790]; ADT2 [At3g07630]; ADT3 [At2g27820]; ADT4 [At3g44720]; ADT5 [At5g22630]; and ADT6 [At1g08250].	O.I.	C.G.	H.G.
54.3	99.8	47.1	At4g00940	827952	Dof-type zinc finger domain-containing protein	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;POM	O.I.	C.G.	H.G.
54.1	99.8	63.6	At1g30760	839958	FAD-binding domain-containing protein	F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;BFPOAM	O.I.	C.G.	H.G.
54.1	99.8	54.8	At1g12940	837852	ATNRT2.5 (nitrate transporter2.5)	member of High affinity nitrate transporter family	O.I.	C.G.	H.G.
54.0	99.8	161.5	At1g17380	838310	JAZ5 (JASMONATE-ZIM-DOMAIN PROTEIN 5)	F:molecular_function unknown;P:response to jasmonic acid stimulus;C:cellular_component unknown;P	O.I.	C.G.	H.G.
53.7	99.8	133.4	At1g28370	839733	ERF11 (ERF DOMAIN PROTEIN 11)	encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and leafy petiole.	O.I.	C.G.	H.G.
53.6	99.8	66.3	At1g68810	843213	basic helix-loop-helix (bHLH) family protein	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFOB	O.I.	C.G.	H.G.
53.4	99.8	192.4	At3g61190	825291	BAP1 (BON ASSOCIATION PROTEIN 1)	Encodes a protein with a C2 domain that binds to BON1 in yeast two hybrid analyses. Its ability to bind to phospholipids is enhanced by calcium ions. Involved in maintaining cell homeostasis.	O.I.	C.G.	H.G.
53.2	99.8	195.7	At3g15210	820752	ERF4 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 4)	Encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (ATERF-4). The protein contains one AP2 domain. Acts as a negative regulator of JA-responsive defense gene expression and resistance to the necrotrophic fungal pathogen Fusarium oxysporum and antagonizes JA inhibition of root elongation.	O.I.	C.G.	H.G.
53.0	99.8	13.7	At1g70920	843431	ATHB18 (Arabidopsis thaliana homeobox-leucine zipper protein 18)	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent, regulation of transcription;C:nucleus, chloroplast;MPOFV	O.I.	C.G.	H.G.
52.8	99.8	64.0	At4g14580	827106	CIPK4 (CBL-interacting protein kinase 4)	CBL-interacting protein kinase	O.I.	C.G.	H.G.
51.8	99.8	224.9	At5g59550	836074	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:response to chitin;C:unknown;PMOFVB	O.I.	C.G.	H.G.
51.8	99.8	175.5	At5g51190	835193	AP2 domain-containing transcription factor, putative	encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5.	O.I.	C.G.	H.G.
51.1	99.8	42.0	At5g44350	834461	ethylene-responsive nuclear protein -related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POB	O.I.	C.G.	H.G.
50.8	99.8	92.1	At5g38710	833862	proline oxidase, putative / osmotic stress-responsive proline dehydrogenase, putative	F:proline dehydrogenase activity;P:proline catabolic process, glutamate biosynthetic process;C:unknown;BOMFPVA	O.I.	C.G.	H.G.
50.1	99.8	14.8	At3g43930	823509	-	F:molecular_function unknown;P:biological_process unknown;C:intracellular;MFPO	O.I.	C.G.	H.G.
50.0	99.8	87.7	At2g25250	817063	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
49.7	99.8	143.6	At3g19580	821495	AZF2 (ARABIDOPSIS ZINC-FINGER PROTEIN 2)	Encodes zinc finger protein. mRNA levels are upregulated in response to ABA, high salt, and mild dessication. The protein is localized to the nucleus and acts as a transcriptional repressor.	O.I.	C.G.	H.G.
49.3	99.8	67.1	At1g58420	842211	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
48.9	99.8	109.8	At1g66500	842968	zinc finger (C2H2-type) family protein	F:zinc ion binding;P:biological_process unknown;C:intracellular;MFOP	O.I.	C.G.	H.G.
48.7	99.8	122.0	At4g35480	829700	RHA3B	Encodes a putative RING-H2 finger protein RHA3b.	O.I.	C.G.	H.G.
47.3	99.8	94.4	At1g49320	841355	BURP domain-containing protein	F:molecular_function unknown;P:unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
46.9	99.8	31.6	At3g24310	822019	MYB305 (myb domain protein 305)	snapdragon myb protein 305 homolog (myb)	O.I.	C.G.	H.G.
46.5	99.8	233.7	At4g34410	829591	RRTF1 ({REDOX RESPONSIVE TRANSCRIPTION FACTOR 1)	encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5.	O.I.	C.G.	H.G.
46.5	99.8	37.2	At5g56460	835747	protein kinase, putative	F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:plasma membrane;MPOBFVA	O.I.	C.G.	H.G.
46.3	99.8	136.1	At1g61340	842428	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
46.1	99.8	154.8	At1g22160	838821	senescence-associated protein-related	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
46.0	99.8	43.1	At2g45680	819176	TCP family transcription factor, putative	F:transcription factor activity;P:regulation of transcription;C:nucleus;OPMFB	O.I.	C.G.	H.G.
45.8	99.8	278.8	At4g24570	828559	mitochondrial substrate carrier family protein	F:binding;P:transport, mitochondrial transport;C:mitochondrial inner membrane, membrane;MFPO	O.I.	C.G.	H.G.
45.6	99.8	47.7	At1g17590	838335	NF-YA8 (NUCLEAR FACTOR Y, SUBUNIT A8)	F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:CCAAT-binding factor complex, nucleus, chloroplast;PMFOB	O.I.	C.G.	H.G.
45.4	99.8	113.4	At5g40960	834098	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;P	O.I.	C.G.	H.G.
45.2	99.8	89.5	At3g27210	822340	unknown protein	F:molecular_function unknown;P:N-terminal protein myristoylation;C:plasma membrane;MPOBF	O.I.	C.G.	H.G.
44.3	99.8	20.7	At5g06510	830539	NF-YA10 (NUCLEAR FACTOR Y, SUBUNIT A10)	F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:CCAAT-binding factor complex, nucleus;PMFO	O.I.	C.G.	H.G.
43.5	99.8	14.1	At5g19040	832023	IPT5	Encodes cytokinin synthase.	O.I.	C.G.	H.G.
42.4	99.8	70.3	At3g16720	820924	ATL2	RING-H2 protein induced after exposure to chitin or inactivated crude cellulase preparations.	O.I.	C.G.	H.G.
42.3	99.8	76.2	At1g61660	842462	basic helix-loop-helix (bHLH) family protein	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMOBF	O.I.	C.G.	H.G.
42.0	99.8	24.0	At1g55610	842010	BRL1 (BRI 1 LIKE)	mutant has Altered vascular cell differentiation; LRR Receptor Kinase	O.I.	C.G.	H.G.
41.2	99.8	136.6	At1g52150	841645	ATHB-15	Member of the class III HD-ZIP protein family. Contains homeodomain and leucine zipper domain. Critical for vascular development and negatively regulates vascular cell differentiation.	O.I.	C.G.	H.G.
41.1	99.8	124.0	At3g49530	824115	anac062 (Arabidopsis NAC domain containing protein 62)	F:transcription factor activity;P:multicellular organismal development, response to chitin;C:cellular_component unknown;P	O.I.	C.G.	H.G.
41.1	99.8	52.4	At1g67880	843116	glycosyl transferase family 17 protein	F:transferase activity, transferring glycosyl groups, acetylglucosaminyltransferase activity;P:protein amino acid N-linked glycosylation;C:membrane;OPMFBV	O.I.	C.G.	H.G.
41.1	99.8	41.8	At4g16000	827284	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
41.0	99.8	61.2	At2g22680	816799	zinc finger (C3HC4-type RING finger) family protein	F:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:unknown;C:unknown;PBOMFA	O.I.	C.G.	H.G.
40.8	99.8	76.7	At1g34300	840330	lectin protein kinase family protein	F:in 6 functions;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA	O.I.	C.G.	H.G.
40.7	99.8	91.9	At5g49660	835028	leucine-rich repeat transmembrane protein kinase, putative	F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
40.0	99.8	144.9	At3g21710	821725	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
39.6	99.8	114.9	At1g25530	839139	lysine and histidine specific transporter, putative	F:amino acid transmembrane transporter activity;P:amino acid transport;C:membrane;PMFOBA	O.I.	C.G.	H.G.
39.3	99.8	36.3	At4g39720	830127	VQ motif-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPMF	O.I.	C.G.	H.G.
39.1	99.8	28.3	At3g54430	824609	SRS6 (SHI-RELATED SEQUENCE 6)	A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis.	O.I.	C.G.	H.G.
39.0	99.8	200.9	At2g33310	817894	IAA13	Auxin induced gene, IAA13 (IAA13).	O.I.	C.G.	H.G.
38.6	99.8	34.4	At5g59530	836072	2-oxoglutarate-dependent dioxygenase, putative	F:transferase activity, transferring glycosyl groups;P:unknown;C:unknown;POBFM	O.I.	C.G.	H.G.

Back to the CoP portal site

Back to the KAGIANA project homepage

GSM ID	GSM142655
Assay name	MC002_ATH1_A11.3-dubos-mxh
GSE experiment	GSE6151: The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis

Microarray experiments to specifically-expressed genes

GSM ID GSM142655 Assay name MC002_ATH1_A11.3-dubos-mxh GSE experiment GSE6151: The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis

GSM ID GSM142655

Assay name MC002_ATH1_A11.3-dubos-mxh

GSE experiment GSE6151: The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis