CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM142651

Assay name MC002_ATH1_A10.2-dubos-wth

GSE experiment GSE6151: The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
381.8 100.0 102.3 At4g15100 827176 scpl30 (serine carboxypeptidase-like 30) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PFMOB O.I. C.G. H.G.
191.6 100.0 95.6 At1g11080 837649 scpl31 (serine carboxypeptidase-like 31) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOB O.I. C.G. H.G.
170.8 100.0 108.7 At3g63110 825486 ATIPT3 (ARABIDOPSIS THALIANA ISOPENTENYLTRANSFERASE 3) Encodes cytokinin synthase involved in cytokinin biosynthesis. IPT3 subcellular localization is modulated by farnesylation- when farnesylated it is localized to the nucleus, otherwise to the chloroplast. O.I. C.G. H.G.
134.3 99.9 278.4 At5g65040 836628 senescence-associated protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
130.1 99.9 68.0 At1g78815 844218 LSH7 (LIGHT SENSITIVE HYPOCOTYLS 7) F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PM O.I. C.G. H.G.
123.8 99.9 57.4 At5g23810 832446 AAP7 Encodes nonfunctional amino acid transporter. AAP7 is the most distantly related member of the AAP family, a group of well characterized amino acid transporters within the ATF1 superfamily. Expression of this gene has not been detected with RNA gel blots or promoter GUS studies. O.I. C.G. H.G.
121.6 99.9 126.0 At2g39705 818554 RTFL8 (ROTUNDIFOLIA LIKE 8) F:molecular_function unknown;P:shoot development;C:chloroplast;P O.I. C.G. H.G.
110.3 99.9 70.9 At5g63580 836477 FLS2 (FLAVONOL SYNTHASE 2) encodes a protein whose sequence is similar to flavonol synthase O.I. C.G. H.G.
110.3 99.9 44.8 At2g40200 818611 basic helix-loop-helix (bHLH) family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMOFB O.I. C.G. H.G.
95.5 99.9 92.5 At5g66180 836750 - F:unknown;P:unknown;C:cellular_component unknown;BOMAFP O.I. C.G. H.G.
83.5 99.9 47.8 At1g03760 839119 prefoldin subunit family protein F:unfolded protein binding;P:protein folding;C:prefoldin complex;MOPAFBV O.I. C.G. H.G.
75.9 99.9 33.5 At1g07300 837241 josephin protein-related F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
74.6 99.9 50.7 At3g53210 824487 nodulin MtN21 family protein F:unknown;P:unknown;C:membrane;OBPAM O.I. C.G. H.G.
72.6 99.9 41.4 At2g37900 818366 proton-dependent oligopeptide transport (POT) family protein F:transporter activity;P:oligopeptide transport;C:membrane;BPMOF O.I. C.G. H.G.
70.5 99.9 103.4 At4g37430 829897 CYP91A2 (CYTOCHROME P450 MONOOXYGENASE 91A2) Encodes a member of the CYP81F cytochrome P450 monooxygenase subfamily. O.I. C.G. H.G.
70.1 99.9 99.1 At1g30040 839883 ATGA2OX2 (GIBBERELLIN 2-OXIDASE) Encodes a gibberellin 2-oxidase. AtGA2OX2 expression is responsive to cytokinin and KNOX activities. O.I. C.G. H.G.
66.1 99.8 111.6 At1g49320 841355 BURP domain-containing protein F:molecular_function unknown;P:unknown;C:endomembrane system;P O.I. C.G. H.G.
64.8 99.8 55.1 At2g20550 816577 DNAJ chaperone C-terminal domain-containing protein F:unfolded protein binding;P:protein folding;C:cellular_component unknown;BOMFPAV O.I. C.G. H.G.
64.1 99.8 194.1 At2g22860 816817 ATPSK2 (PHYTOSULFOKINE 2 PRECURSOR) Phytosulfokine 2 precursor, coding for a unique plant peptide growth factor. O.I. C.G. H.G.
59.1 99.8 45.8 At5g16080 831465 AtCXE17 (Arabidopsis thaliana carboxyesterase 17) F:hydrolase activity;P:metabolic process;C:cellular_component unknown;BMOPFAV O.I. C.G. H.G.
51.9 99.8 20.8 At1g21220 3766770 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
51.2 99.8 202.2 At2g42610 818861 LSH10 (LIGHT SENSITIVE HYPOCOTYLS 10) F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM O.I. C.G. H.G.
50.4 99.8 32.6 At5g64530 836574 XND1 F:transcription factor activity;P:multicellular organismal development, shoot development, xylem histogenesis, programmed cell death;C:cellular_component unknown;P O.I. C.G. H.G.
49.8 99.8 44.8 At2g31160 817672 LSH3 (LIGHT SENSITIVE HYPOCOTYLS 3) F:molecular_function unknown;P:biological_process unknown;C:unknown;PM O.I. C.G. H.G.
48.5 99.8 122.6 At3g05690 819738 NF-YA2 (NUCLEAR FACTOR Y, SUBUNIT A2) Encodes a subunit of CCAAT-binding complex, binds to CCAAT box motif present in some plant promoter sequences. One of three members of this class (HAP2A, HAP2B, HAP2C), it is expressed in vegetative and reproductive tissues. O.I. C.G. H.G.
48.5 99.8 92.4 At4g30460 829169 glycine-rich protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MBOPFVA O.I. C.G. H.G.
48.2 99.8 28.2 At5g03680 831757 PTL (PETAL LOSS) Recessive mutations are defective in organ initiation and orientation in the second whorl. This gene encodes a trihelix transcription factor whose expression is limited to margins of floral and vegetative organs. Overexpression and double mutant analyses suggest that this gene is involved in limiting lateral growth of organs. O.I. C.G. H.G.
46.9 99.8 121.5 At5g13330 831174 Rap2.6L (related to AP2 6L) encodes a member of the ERF (ethylene response factor) subfamily B-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily. O.I. C.G. H.G.
46.4 99.8 182.3 At1g14890 838054 enzyme inhibitor/ pectinesterase/ pectinesterase inhibitor F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
46.2 99.8 79.6 At5g36220 833619 CYP81D1 (CYTOCHROME P450 81D1) member of CYP81D O.I. C.G. H.G.
45.3 99.8 200.7 At4g29080 829029 PAP2 (PHYTOCHROME-ASSOCIATED PROTEIN 2) phytochrome-associated protein 2 (PAP2) O.I. C.G. H.G.
44.1 99.8 191.5 At3g45160 823652 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
41.9 99.8 90.2 At1g62810 842580 copper amine oxidase, putative F:amine oxidase activity, quinone binding, copper ion binding;P:cellular amine metabolic process;C:endomembrane system;FBMOPA O.I. C.G. H.G.
41.3 99.8 35.0 At2g18590 816374 carbohydrate transmembrane transporter/ sugar:hydrogen symporter F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:biological_process unknown;C:endomembrane system, membrane;BOMFPAV O.I. C.G. H.G.
40.2 99.8 81.6 At3g21250 821679 ATMRP6 member of MRP subfamily O.I. C.G. H.G.
39.4 99.8 35.4 At4g22160 828305 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
38.5 99.8 215.1 At1g27030 839592 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOP O.I. C.G. H.G.
38.5 99.8 184.0 At5g62680 836389 proton-dependent oligopeptide transport (POT) family protein F:transporter activity;P:oligopeptide transport;C:plasma membrane, membrane;PMBFO O.I. C.G. H.G.
38.1 99.8 88.1 At1g62360 842534 STM (SHOOT MERISTEMLESS) Class I knotted-like homeodomain protein that is required for shoot apical meristem (SAM) formation during embryogenesis and for SAM function throughout the lifetime of the plant. Functions by preventing incorporation of cells in the meristem center into differentiating organ primordia. O.I. C.G. H.G.
38.1 99.8 33.7 At5g43910 834413 pfkB-type carbohydrate kinase family protein F:kinase activity, ribokinase activity;P:D-ribose metabolic process;C:cellular_component unknown;BOMPAF O.I. C.G. H.G.
38.0 99.8 117.8 At5g59440 836063 ZEU1 (ZEUS1) Encodes thymidylate kinase which exists in two isoforms in plants. The longer variant of 263 amino acids with a N-terminal extension that is required for localization to the mitochondrion. The second isoform of 224 residues is localized to the cytoplasm and nucleoplasm. Peak of expression occurs during G1/S phase transition. O.I. C.G. H.G.
37.1 99.7 88.0 At3g05120 819674 GID1A (GA INSENSITIVE DWARF1A) Encodes a gibberellin (GA) receptor ortholog of the rice GA receptor gene (OsGID1). Has GA-binding activity, showing higher affinity to GA4. Interacts with DELLA proteins in vivo in the presence of GA4. The DELLA region alone can interact with GID1A in GA-dependent manner in a Y2H assay. O.I. C.G. H.G.
37.0 99.7 91.3 At1g01730 839260 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PMBF O.I. C.G. H.G.
36.8 99.7 102.0 At5g40960 834098 unknown protein F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;P O.I. C.G. H.G.
36.5 99.7 113.7 At2g04795 815023 unknown protein F:molecular_function unknown;P:response to oxidative stress;C:unknown;P O.I. C.G. H.G.
36.2 99.7 105.4 At5g53420 835423 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
35.9 99.7 72.8 At2g45210 819129 auxin-responsive protein-related F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO O.I. C.G. H.G.
35.4 99.7 18.9 At3g02500 821065 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
34.4 99.7 73.5 At1g72830 843614 NF-YA3 (NUCLEAR FACTOR Y, SUBUNIT A3) Encodes a subunit of CCAAT-binding complex, binds to CCAAT box motif present in some plant promoter sequences. One of three members of this class (HAP2A, HAP2B, HAP2C), it is expressed in vegetative and reproductive tissues. O.I. C.G. H.G.
34.3 99.7 72.1 At5g60450 836166 ARF4 (AUXIN RESPONSE FACTOR 4) Encodes a member of the ARF family of transcription factors which mediate auxin responses. ARF4 appears to have redundant function with ETT(ARF3) in specifying abaxial cell identity. O.I. C.G. H.G.
34.0 99.7 144.7 At5g49630 835025 AAP6 (AMINO ACID PERMEASE 6) Is a high affinity amino acid transporter capable of transporting aspartate and tryptophan. May be involved in the amino acid uptake from xylem. O.I. C.G. H.G.
33.8 99.7 61.7 At1g71080 843448 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMOFPAV O.I. C.G. H.G.
33.8 99.7 49.1 At1g23120 838920 major latex protein-related / MLP-related F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P O.I. C.G. H.G.
33.2 99.7 319.7 At3g18280 821356 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P O.I. C.G. H.G.
32.4 99.7 104.1 At5g35330 833487 MBD02 (METHYL-CPG-BINDING DOMAIN PROTEIN 02) Protein containing methyl-CpG-binding domain.Has sequence similarity to human MBD proteins. O.I. C.G. H.G.
32.4 99.7 23.1 At1g33440 840237 proton-dependent oligopeptide transport (POT) family protein F:transporter activity;P:oligopeptide transport;C:plasma membrane, membrane;BPMOF O.I. C.G. H.G.
31.7 99.7 89.4 At1g20160 838606 ATSBT5.2 F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:apoplast;BPOFMA O.I. C.G. H.G.
31.3 99.7 11.7 At3g43930 823509 - F:molecular_function unknown;P:biological_process unknown;C:intracellular;MFPO O.I. C.G. H.G.
30.9 99.7 67.0 At1g24575 839072 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
30.9 99.7 62.4 At1g01070 839550 nodulin MtN21 family protein F:unknown;P:unknown;C:membrane;BPOAFM O.I. C.G. H.G.
30.7 99.7 58.8 At2g14210 815907 AGL44 (AGAMOUS-LIKE 44) MADS box gene, transcription factor O.I. C.G. H.G.
30.6 99.7 11.1 At5g66630 836795 DAR5 (DA1-RELATED PROTEIN 5) F:zinc ion binding;P:unknown;C:unknown;PMOBF O.I. C.G. H.G.
29.4 99.7 76.9 At2g29490 817498 ATGSTU1 (GLUTATHIONE S-TRANSFERASE TAU 1) Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). O.I. C.G. H.G.
29.2 99.7 56.7 At2g12290 815700 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
29.2 99.7 19.0 At5g65850 836714 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
28.8 99.7 167.1 At4g15210 827185 BAM5 (BETA-AMYLASE 5) cytosolic beta-amylase expressed in rosette leaves and inducible by sugar. RAM1 mutants have reduced beta amylase in leaves and stems. O.I. C.G. H.G.
28.8 99.7 141.5 At1g12200 837773 flavin-containing monooxygenase family protein / FMO family protein F:NADP or NADPH binding, monooxygenase activity, FAD binding, flavin-containing monooxygenase activity;P:biological_process unknown;C:cellular_component unknown;BOMFPA O.I. C.G. H.G.
28.8 99.7 22.5 At3g04510 819607 LSH2 (LIGHT SENSITIVE HYPOCOTYLS 2) F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PM O.I. C.G. H.G.
28.5 99.7 48.3 At1g28100 839703 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBFO O.I. C.G. H.G.
28.3 99.7 38.2 At5g51170 835191 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPO O.I. C.G. H.G.
27.9 99.7 42.2 At1g66140 842928 ZFP4 (ZINC FINGER PROTEIN 4) Encodes a zinc finger protein containing only a single zinc finger. O.I. C.G. H.G.
27.8 99.7 56.5 At4g01390 828075 - F:molecular_function unknown;P:biological_process unknown;C:unknown;PO O.I. C.G. H.G.
27.8 99.7 50.4 At1g50420 841464 SCL3 Encodes a scarecrow-like protein (SCL3) Putative transcription factors interacting with the gene product of VHA-B1 (vacuolar ATPase subunit B1; as shown through yeast two-hybrid assay). O.I. C.G. H.G.
27.0 99.7 90.2 At4g32910 829427 - F:unknown;P:biological_process unknown;C:cellular_component unknown;MPFO O.I. C.G. H.G.
26.7 99.7 28.1 At2g45450 819153 ZPR1 (LITTLE ZIPPER 1) ZPR1, a small leucine zipper-containing protein that interacts with REV HD-ZIPIII and is involved in the establishment of leaf polarity. O.I. C.G. H.G.
26.3 99.7 46.3 At3g09880 820146 ATB' BETA Encodes B' regulatory subunit of PP2A (AtB'beta). O.I. C.G. H.G.
26.2 99.7 65.2 At1g01640 839534 speckle-type POZ protein-related F:protein binding;P:biological_process unknown;C:cellular_component unknown;MPOVF O.I. C.G. H.G.
25.9 99.7 17.9 At3g29670 822645 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFO O.I. C.G. H.G.
25.8 99.7 54.2 At1g10480 837588 ZFP5 (ZINC FINGER PROTEIN 5) Encodes a zinc finger protein containing only a single zinc finger. O.I. C.G. H.G.
25.7 99.7 209.7 At2g26740 817215 ATSEH (Arabidopsis thaliana soluble epoxide hydrolase) Encodes a soluble epoxide hydrolase whose expression is induced by auxin and water stress. O.I. C.G. H.G.
25.7 99.7 108.8 At2g43520 818953 ATTI2 Encodes putative trypsin inhibitor protein which may function in defense against herbivory. Member of the defensin-like (DEFL) family. O.I. C.G. H.G.
25.7 99.7 82.8 At1g80050 844345 APT2 (ADENINE PHOSPHORIBOSYL TRANSFERASE 2) Encodes an adenosine phosphoribosyl transferase(E.C:2.4.2.7), a constitutively expressed enzyme involved in the one-step salvage of adenine to AMP. This isozyme has high affinity for cytokinins and is likely to be localized to the cytosol. O.I. C.G. H.G.
25.5 99.7 14.2 At3g27650 822387 LBD25 (LOB DOMAIN-CONTAINING PROTEIN 25) F:unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
25.0 99.6 188.6 At3g22440 821815 hydroxyproline-rich glycoprotein family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFOB O.I. C.G. H.G.
24.9 99.6 30.9 At1g69600 843296 ZFHD1 (ZINC FINGER HOMEODOMAIN 1) Encodes ZFHD1, a member of the zinc finger homeodomain transcriptional factor family. Binds to the 62 bp promoter region of ERD1 (early responsive to dehydration stress 1). Expression of ZFHD1 is induced by drought, high salinity and abscisic acid. O.I. C.G. H.G.
24.8 99.6 17.8 At1g30160 839896 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
24.5 99.6 31.5 At1g36070 840511 WD-40 repeat family protein F:molecular_function unknown;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex;MBFOPA O.I. C.G. H.G.
24.5 99.6 26.2 At3g13810 820593 AtIDD11 (Arabidopsis thaliana Indeterminate(ID)-Domain 11) F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;MOPFB O.I. C.G. H.G.
24.4 99.6 104.9 At1g26665 839207 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPO O.I. C.G. H.G.
24.3 99.6 27.3 At5g59530 836072 2-oxoglutarate-dependent dioxygenase, putative F:transferase activity, transferring glycosyl groups;P:unknown;C:unknown;POBFM O.I. C.G. H.G.
24.2 99.6 123.5 At1g80530 844392 nodulin family protein F:molecular_function unknown;P:biological_process unknown;C:nucleus;BPOFMA O.I. C.G. H.G.
23.8 99.6 81.3 At4g15780 827258 ATVAMP724 member of VAMP72 Gene Family O.I. C.G. H.G.
23.6 99.6 39.9 At3g60160 825186 ATMRP9 member of MRP subfamily O.I. C.G. H.G.
23.5 99.6 38.1 At5g14530 831304 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;MBFOPA O.I. C.G. H.G.
23.5 99.6 10.4 At5g19040 832023 IPT5 Encodes cytokinin synthase. O.I. C.G. H.G.
23.4 99.6 63.0 At1g11520 837695 pliceosome associated protein-related F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MPO O.I. C.G. H.G.
23.3 99.6 33.4 At3g50630 824226 KRP2 (KIP-RELATED PROTEIN 2) Kip-related protein (KRP) gene, encodes CDK (cyclin-dependent kinase) inhibitor (CKI), negative regulator of cell division. A member of seven KRP genes found in Arabidopsis thaliana. Differential expression patterns for distinct KRPs were revealed by in situ hybridization. Gene was isolated from a yeast two hybrid screen as an interacting protein of CDC2A. Recombinant protein has a strong kinase inhibitor activity in vitro. Transcript is expressed in all tissues examined but is differentially distributed from ICK1. Controls the onset of the endoreduplication cycle through inhibition of CDKA;1. The KRP2 protein abundance is regulated by proteolysis through CDKB1;1 phosphorylation. O.I. C.G. H.G.
23.2 99.6 22.8 At5g42060 834211 unknown protein F:unknown;P:unknown;C:cellular_component unknown;P O.I. C.G. H.G.
23.0 99.6 94.2 At1g78490 844185 CYP708A3 member of CYP708A O.I. C.G. H.G.
23.0 99.6 55.3 At3g07870 819978 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
381.8	100.0	102.3	At4g15100	827176	scpl30 (serine carboxypeptidase-like 30)	F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PFMOB	O.I.	C.G.	H.G.
191.6	100.0	95.6	At1g11080	837649	scpl31 (serine carboxypeptidase-like 31)	F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOB	O.I.	C.G.	H.G.
170.8	100.0	108.7	At3g63110	825486	ATIPT3 (ARABIDOPSIS THALIANA ISOPENTENYLTRANSFERASE 3)	Encodes cytokinin synthase involved in cytokinin biosynthesis. IPT3 subcellular localization is modulated by farnesylation- when farnesylated it is localized to the nucleus, otherwise to the chloroplast.	O.I.	C.G.	H.G.
134.3	99.9	278.4	At5g65040	836628	senescence-associated protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
130.1	99.9	68.0	At1g78815	844218	LSH7 (LIGHT SENSITIVE HYPOCOTYLS 7)	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PM	O.I.	C.G.	H.G.
123.8	99.9	57.4	At5g23810	832446	AAP7	Encodes nonfunctional amino acid transporter. AAP7 is the most distantly related member of the AAP family, a group of well characterized amino acid transporters within the ATF1 superfamily. Expression of this gene has not been detected with RNA gel blots or promoter GUS studies.	O.I.	C.G.	H.G.
121.6	99.9	126.0	At2g39705	818554	RTFL8 (ROTUNDIFOLIA LIKE 8)	F:molecular_function unknown;P:shoot development;C:chloroplast;P	O.I.	C.G.	H.G.
110.3	99.9	70.9	At5g63580	836477	FLS2 (FLAVONOL SYNTHASE 2)	encodes a protein whose sequence is similar to flavonol synthase	O.I.	C.G.	H.G.
110.3	99.9	44.8	At2g40200	818611	basic helix-loop-helix (bHLH) family protein	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMOFB	O.I.	C.G.	H.G.
95.5	99.9	92.5	At5g66180	836750	-	F:unknown;P:unknown;C:cellular_component unknown;BOMAFP	O.I.	C.G.	H.G.
83.5	99.9	47.8	At1g03760	839119	prefoldin subunit family protein	F:unfolded protein binding;P:protein folding;C:prefoldin complex;MOPAFBV	O.I.	C.G.	H.G.
75.9	99.9	33.5	At1g07300	837241	josephin protein-related	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
74.6	99.9	50.7	At3g53210	824487	nodulin MtN21 family protein	F:unknown;P:unknown;C:membrane;OBPAM	O.I.	C.G.	H.G.
72.6	99.9	41.4	At2g37900	818366	proton-dependent oligopeptide transport (POT) family protein	F:transporter activity;P:oligopeptide transport;C:membrane;BPMOF	O.I.	C.G.	H.G.
70.5	99.9	103.4	At4g37430	829897	CYP91A2 (CYTOCHROME P450 MONOOXYGENASE 91A2)	Encodes a member of the CYP81F cytochrome P450 monooxygenase subfamily.	O.I.	C.G.	H.G.
70.1	99.9	99.1	At1g30040	839883	ATGA2OX2 (GIBBERELLIN 2-OXIDASE)	Encodes a gibberellin 2-oxidase. AtGA2OX2 expression is responsive to cytokinin and KNOX activities.	O.I.	C.G.	H.G.
66.1	99.8	111.6	At1g49320	841355	BURP domain-containing protein	F:molecular_function unknown;P:unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
64.8	99.8	55.1	At2g20550	816577	DNAJ chaperone C-terminal domain-containing protein	F:unfolded protein binding;P:protein folding;C:cellular_component unknown;BOMFPAV	O.I.	C.G.	H.G.
64.1	99.8	194.1	At2g22860	816817	ATPSK2 (PHYTOSULFOKINE 2 PRECURSOR)	Phytosulfokine 2 precursor, coding for a unique plant peptide growth factor.	O.I.	C.G.	H.G.
59.1	99.8	45.8	At5g16080	831465	AtCXE17 (Arabidopsis thaliana carboxyesterase 17)	F:hydrolase activity;P:metabolic process;C:cellular_component unknown;BMOPFAV	O.I.	C.G.	H.G.
51.9	99.8	20.8	At1g21220	3766770	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
51.2	99.8	202.2	At2g42610	818861	LSH10 (LIGHT SENSITIVE HYPOCOTYLS 10)	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM	O.I.	C.G.	H.G.
50.4	99.8	32.6	At5g64530	836574	XND1	F:transcription factor activity;P:multicellular organismal development, shoot development, xylem histogenesis, programmed cell death;C:cellular_component unknown;P	O.I.	C.G.	H.G.
49.8	99.8	44.8	At2g31160	817672	LSH3 (LIGHT SENSITIVE HYPOCOTYLS 3)	F:molecular_function unknown;P:biological_process unknown;C:unknown;PM	O.I.	C.G.	H.G.
48.5	99.8	122.6	At3g05690	819738	NF-YA2 (NUCLEAR FACTOR Y, SUBUNIT A2)	Encodes a subunit of CCAAT-binding complex, binds to CCAAT box motif present in some plant promoter sequences. One of three members of this class (HAP2A, HAP2B, HAP2C), it is expressed in vegetative and reproductive tissues.	O.I.	C.G.	H.G.
48.5	99.8	92.4	At4g30460	829169	glycine-rich protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MBOPFVA	O.I.	C.G.	H.G.
48.2	99.8	28.2	At5g03680	831757	PTL (PETAL LOSS)	Recessive mutations are defective in organ initiation and orientation in the second whorl. This gene encodes a trihelix transcription factor whose expression is limited to margins of floral and vegetative organs. Overexpression and double mutant analyses suggest that this gene is involved in limiting lateral growth of organs.	O.I.	C.G.	H.G.
46.9	99.8	121.5	At5g13330	831174	Rap2.6L (related to AP2 6L)	encodes a member of the ERF (ethylene response factor) subfamily B-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily.	O.I.	C.G.	H.G.
46.4	99.8	182.3	At1g14890	838054	enzyme inhibitor/ pectinesterase/ pectinesterase inhibitor	F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
46.2	99.8	79.6	At5g36220	833619	CYP81D1 (CYTOCHROME P450 81D1)	member of CYP81D	O.I.	C.G.	H.G.
45.3	99.8	200.7	At4g29080	829029	PAP2 (PHYTOCHROME-ASSOCIATED PROTEIN 2)	phytochrome-associated protein 2 (PAP2)	O.I.	C.G.	H.G.
44.1	99.8	191.5	At3g45160	823652	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
41.9	99.8	90.2	At1g62810	842580	copper amine oxidase, putative	F:amine oxidase activity, quinone binding, copper ion binding;P:cellular amine metabolic process;C:endomembrane system;FBMOPA	O.I.	C.G.	H.G.
41.3	99.8	35.0	At2g18590	816374	carbohydrate transmembrane transporter/ sugar:hydrogen symporter	F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:biological_process unknown;C:endomembrane system, membrane;BOMFPAV	O.I.	C.G.	H.G.
40.2	99.8	81.6	At3g21250	821679	ATMRP6	member of MRP subfamily	O.I.	C.G.	H.G.
39.4	99.8	35.4	At4g22160	828305	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
38.5	99.8	215.1	At1g27030	839592	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOP	O.I.	C.G.	H.G.
38.5	99.8	184.0	At5g62680	836389	proton-dependent oligopeptide transport (POT) family protein	F:transporter activity;P:oligopeptide transport;C:plasma membrane, membrane;PMBFO	O.I.	C.G.	H.G.
38.1	99.8	88.1	At1g62360	842534	STM (SHOOT MERISTEMLESS)	Class I knotted-like homeodomain protein that is required for shoot apical meristem (SAM) formation during embryogenesis and for SAM function throughout the lifetime of the plant. Functions by preventing incorporation of cells in the meristem center into differentiating organ primordia.	O.I.	C.G.	H.G.
38.1	99.8	33.7	At5g43910	834413	pfkB-type carbohydrate kinase family protein	F:kinase activity, ribokinase activity;P:D-ribose metabolic process;C:cellular_component unknown;BOMPAF	O.I.	C.G.	H.G.
38.0	99.8	117.8	At5g59440	836063	ZEU1 (ZEUS1)	Encodes thymidylate kinase which exists in two isoforms in plants. The longer variant of 263 amino acids with a N-terminal extension that is required for localization to the mitochondrion. The second isoform of 224 residues is localized to the cytoplasm and nucleoplasm. Peak of expression occurs during G1/S phase transition.	O.I.	C.G.	H.G.
37.1	99.7	88.0	At3g05120	819674	GID1A (GA INSENSITIVE DWARF1A)	Encodes a gibberellin (GA) receptor ortholog of the rice GA receptor gene (OsGID1). Has GA-binding activity, showing higher affinity to GA4. Interacts with DELLA proteins in vivo in the presence of GA4. The DELLA region alone can interact with GID1A in GA-dependent manner in a Y2H assay.	O.I.	C.G.	H.G.
37.0	99.7	91.3	At1g01730	839260	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PMBF	O.I.	C.G.	H.G.
36.8	99.7	102.0	At5g40960	834098	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;P	O.I.	C.G.	H.G.
36.5	99.7	113.7	At2g04795	815023	unknown protein	F:molecular_function unknown;P:response to oxidative stress;C:unknown;P	O.I.	C.G.	H.G.
36.2	99.7	105.4	At5g53420	835423	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
35.9	99.7	72.8	At2g45210	819129	auxin-responsive protein-related	F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO	O.I.	C.G.	H.G.
35.4	99.7	18.9	At3g02500	821065	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
34.4	99.7	73.5	At1g72830	843614	NF-YA3 (NUCLEAR FACTOR Y, SUBUNIT A3)	Encodes a subunit of CCAAT-binding complex, binds to CCAAT box motif present in some plant promoter sequences. One of three members of this class (HAP2A, HAP2B, HAP2C), it is expressed in vegetative and reproductive tissues.	O.I.	C.G.	H.G.
34.3	99.7	72.1	At5g60450	836166	ARF4 (AUXIN RESPONSE FACTOR 4)	Encodes a member of the ARF family of transcription factors which mediate auxin responses. ARF4 appears to have redundant function with ETT(ARF3) in specifying abaxial cell identity.	O.I.	C.G.	H.G.
34.0	99.7	144.7	At5g49630	835025	AAP6 (AMINO ACID PERMEASE 6)	Is a high affinity amino acid transporter capable of transporting aspartate and tryptophan. May be involved in the amino acid uptake from xylem.	O.I.	C.G.	H.G.
33.8	99.7	61.7	At1g71080	843448	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMOFPAV	O.I.	C.G.	H.G.
33.8	99.7	49.1	At1g23120	838920	major latex protein-related / MLP-related	F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P	O.I.	C.G.	H.G.
33.2	99.7	319.7	At3g18280	821356	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:endomembrane system;P	O.I.	C.G.	H.G.
32.4	99.7	104.1	At5g35330	833487	MBD02 (METHYL-CPG-BINDING DOMAIN PROTEIN 02)	Protein containing methyl-CpG-binding domain.Has sequence similarity to human MBD proteins.	O.I.	C.G.	H.G.
32.4	99.7	23.1	At1g33440	840237	proton-dependent oligopeptide transport (POT) family protein	F:transporter activity;P:oligopeptide transport;C:plasma membrane, membrane;BPMOF	O.I.	C.G.	H.G.
31.7	99.7	89.4	At1g20160	838606	ATSBT5.2	F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:apoplast;BPOFMA	O.I.	C.G.	H.G.
31.3	99.7	11.7	At3g43930	823509	-	F:molecular_function unknown;P:biological_process unknown;C:intracellular;MFPO	O.I.	C.G.	H.G.
30.9	99.7	67.0	At1g24575	839072	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
30.9	99.7	62.4	At1g01070	839550	nodulin MtN21 family protein	F:unknown;P:unknown;C:membrane;BPOAFM	O.I.	C.G.	H.G.
30.7	99.7	58.8	At2g14210	815907	AGL44 (AGAMOUS-LIKE 44)	MADS box gene, transcription factor	O.I.	C.G.	H.G.
30.6	99.7	11.1	At5g66630	836795	DAR5 (DA1-RELATED PROTEIN 5)	F:zinc ion binding;P:unknown;C:unknown;PMOBF	O.I.	C.G.	H.G.
29.4	99.7	76.9	At2g29490	817498	ATGSTU1 (GLUTATHIONE S-TRANSFERASE TAU 1)	Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).	O.I.	C.G.	H.G.
29.2	99.7	56.7	At2g12290	815700	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
29.2	99.7	19.0	At5g65850	836714	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
28.8	99.7	167.1	At4g15210	827185	BAM5 (BETA-AMYLASE 5)	cytosolic beta-amylase expressed in rosette leaves and inducible by sugar. RAM1 mutants have reduced beta amylase in leaves and stems.	O.I.	C.G.	H.G.
28.8	99.7	141.5	At1g12200	837773	flavin-containing monooxygenase family protein / FMO family protein	F:NADP or NADPH binding, monooxygenase activity, FAD binding, flavin-containing monooxygenase activity;P:biological_process unknown;C:cellular_component unknown;BOMFPA	O.I.	C.G.	H.G.
28.8	99.7	22.5	At3g04510	819607	LSH2 (LIGHT SENSITIVE HYPOCOTYLS 2)	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PM	O.I.	C.G.	H.G.
28.5	99.7	48.3	At1g28100	839703	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBFO	O.I.	C.G.	H.G.
28.3	99.7	38.2	At5g51170	835191	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPO	O.I.	C.G.	H.G.
27.9	99.7	42.2	At1g66140	842928	ZFP4 (ZINC FINGER PROTEIN 4)	Encodes a zinc finger protein containing only a single zinc finger.	O.I.	C.G.	H.G.
27.8	99.7	56.5	At4g01390	828075	-	F:molecular_function unknown;P:biological_process unknown;C:unknown;PO	O.I.	C.G.	H.G.
27.8	99.7	50.4	At1g50420	841464	SCL3	Encodes a scarecrow-like protein (SCL3) Putative transcription factors interacting with the gene product of VHA-B1 (vacuolar ATPase subunit B1; as shown through yeast two-hybrid assay).	O.I.	C.G.	H.G.
27.0	99.7	90.2	At4g32910	829427	-	F:unknown;P:biological_process unknown;C:cellular_component unknown;MPFO	O.I.	C.G.	H.G.
26.7	99.7	28.1	At2g45450	819153	ZPR1 (LITTLE ZIPPER 1)	ZPR1, a small leucine zipper-containing protein that interacts with REV HD-ZIPIII and is involved in the establishment of leaf polarity.	O.I.	C.G.	H.G.
26.3	99.7	46.3	At3g09880	820146	ATB' BETA	Encodes B' regulatory subunit of PP2A (AtB'beta).	O.I.	C.G.	H.G.
26.2	99.7	65.2	At1g01640	839534	speckle-type POZ protein-related	F:protein binding;P:biological_process unknown;C:cellular_component unknown;MPOVF	O.I.	C.G.	H.G.
25.9	99.7	17.9	At3g29670	822645	transferase family protein	F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFO	O.I.	C.G.	H.G.
25.8	99.7	54.2	At1g10480	837588	ZFP5 (ZINC FINGER PROTEIN 5)	Encodes a zinc finger protein containing only a single zinc finger.	O.I.	C.G.	H.G.
25.7	99.7	209.7	At2g26740	817215	ATSEH (Arabidopsis thaliana soluble epoxide hydrolase)	Encodes a soluble epoxide hydrolase whose expression is induced by auxin and water stress.	O.I.	C.G.	H.G.
25.7	99.7	108.8	At2g43520	818953	ATTI2	Encodes putative trypsin inhibitor protein which may function in defense against herbivory. Member of the defensin-like (DEFL) family.	O.I.	C.G.	H.G.
25.7	99.7	82.8	At1g80050	844345	APT2 (ADENINE PHOSPHORIBOSYL TRANSFERASE 2)	Encodes an adenosine phosphoribosyl transferase(E.C:2.4.2.7), a constitutively expressed enzyme involved in the one-step salvage of adenine to AMP. This isozyme has high affinity for cytokinins and is likely to be localized to the cytosol.	O.I.	C.G.	H.G.
25.5	99.7	14.2	At3g27650	822387	LBD25 (LOB DOMAIN-CONTAINING PROTEIN 25)	F:unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
25.0	99.6	188.6	At3g22440	821815	hydroxyproline-rich glycoprotein family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFOB	O.I.	C.G.	H.G.
24.9	99.6	30.9	At1g69600	843296	ZFHD1 (ZINC FINGER HOMEODOMAIN 1)	Encodes ZFHD1, a member of the zinc finger homeodomain transcriptional factor family. Binds to the 62 bp promoter region of ERD1 (early responsive to dehydration stress 1). Expression of ZFHD1 is induced by drought, high salinity and abscisic acid.	O.I.	C.G.	H.G.
24.8	99.6	17.8	At1g30160	839896	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
24.5	99.6	31.5	At1g36070	840511	WD-40 repeat family protein	F:molecular_function unknown;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex;MBFOPA	O.I.	C.G.	H.G.
24.5	99.6	26.2	At3g13810	820593	AtIDD11 (Arabidopsis thaliana Indeterminate(ID)-Domain 11)	F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;MOPFB	O.I.	C.G.	H.G.
24.4	99.6	104.9	At1g26665	839207	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPO	O.I.	C.G.	H.G.
24.3	99.6	27.3	At5g59530	836072	2-oxoglutarate-dependent dioxygenase, putative	F:transferase activity, transferring glycosyl groups;P:unknown;C:unknown;POBFM	O.I.	C.G.	H.G.
24.2	99.6	123.5	At1g80530	844392	nodulin family protein	F:molecular_function unknown;P:biological_process unknown;C:nucleus;BPOFMA	O.I.	C.G.	H.G.
23.8	99.6	81.3	At4g15780	827258	ATVAMP724	member of VAMP72 Gene Family	O.I.	C.G.	H.G.
23.6	99.6	39.9	At3g60160	825186	ATMRP9	member of MRP subfamily	O.I.	C.G.	H.G.
23.5	99.6	38.1	At5g14530	831304	transducin family protein / WD-40 repeat family protein	F:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;MBFOPA	O.I.	C.G.	H.G.
23.5	99.6	10.4	At5g19040	832023	IPT5	Encodes cytokinin synthase.	O.I.	C.G.	H.G.
23.4	99.6	63.0	At1g11520	837695	pliceosome associated protein-related	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MPO	O.I.	C.G.	H.G.
23.3	99.6	33.4	At3g50630	824226	KRP2 (KIP-RELATED PROTEIN 2)	Kip-related protein (KRP) gene, encodes CDK (cyclin-dependent kinase) inhibitor (CKI), negative regulator of cell division. A member of seven KRP genes found in Arabidopsis thaliana. Differential expression patterns for distinct KRPs were revealed by in situ hybridization. Gene was isolated from a yeast two hybrid screen as an interacting protein of CDC2A. Recombinant protein has a strong kinase inhibitor activity in vitro. Transcript is expressed in all tissues examined but is differentially distributed from ICK1. Controls the onset of the endoreduplication cycle through inhibition of CDKA;1. The KRP2 protein abundance is regulated by proteolysis through CDKB1;1 phosphorylation.	O.I.	C.G.	H.G.
23.2	99.6	22.8	At5g42060	834211	unknown protein	F:unknown;P:unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
23.0	99.6	94.2	At1g78490	844185	CYP708A3	member of CYP708A	O.I.	C.G.	H.G.
23.0	99.6	55.3	At3g07870	819978	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.

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GSM ID	GSM142651
Assay name	MC002_ATH1_A10.2-dubos-wth
GSE experiment	GSE6151: The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis

Microarray experiments to specifically-expressed genes

GSM ID GSM142651 Assay name MC002_ATH1_A10.2-dubos-wth GSE experiment GSE6151: The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis

GSM ID GSM142651

Assay name MC002_ATH1_A10.2-dubos-wth

GSE experiment GSE6151: The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis