Microarray experiments to specifically-expressed genes

GSM ID GSM142645
Assay name MC002_ATH1_A8.2-dubos-aih
GSE experiment GSE6151: The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
204.9100.0154.4At1g49230841346zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVO.I.C.G.H.G.
159.599.9206.3At5g16570831519GLN1Encodes a cytosolic glutamine synthetase, the enzyme has high affinity with substrate ammoniumO.I.C.G.H.G.
149.499.9130.4At1g10480837588ZFP5 (ZINC FINGER PROTEIN 5)Encodes a zinc finger protein containing only a single zinc finger.O.I.C.G.H.G.
129.999.942.8At5g58680835982armadillo/beta-catenin repeat family proteinF:binding;P:biological_process unknown;C:cellular_component unknown;MPOFBO.I.C.G.H.G.
113.799.967.2At4g19370827678unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
113.499.975.2At1g17590838335NF-YA8 (NUCLEAR FACTOR Y, SUBUNIT A8)F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:CCAAT-binding factor complex, nucleus, chloroplast;PMFOBO.I.C.G.H.G.
111.899.987.2At5g63710836491leucine-rich repeat transmembrane protein kinase, putativeF:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:cellular_component unknown;PMOBFVAO.I.C.G.H.G.
108.599.9141.6At3g62960825471glutaredoxin family proteinF:electron carrier activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:endomembrane system;PMFBOO.I.C.G.H.G.
102.999.9267.5At1g12200837773flavin-containing monooxygenase family protein / FMO family proteinF:NADP or NADPH binding, monooxygenase activity, FAD binding, flavin-containing monooxygenase activity;P:biological_process unknown;C:cellular_component unknown;BOMFPAO.I.C.G.H.G.
99.999.924.8At5g20420832164CHR42 (chromatin remodeling 42)F:helicase activity, DNA binding, ATP binding, nucleic acid binding;P:unknown;C:unknown;MFBOPAVO.I.C.G.H.G.
92.799.952.5At5g56460835747protein kinase, putativeF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:plasma membrane;MPOBFVAO.I.C.G.H.G.
91.999.9118.1At5g60450836166ARF4 (AUXIN RESPONSE FACTOR 4)Encodes a member of the ARF family of transcription factors which mediate auxin responses. ARF4 appears to have redundant function with ETT(ARF3) in specifying abaxial cell identity.O.I.C.G.H.G.
87.099.9164.3At3g05690819738NF-YA2 (NUCLEAR FACTOR Y, SUBUNIT A2)Encodes a subunit of CCAAT-binding complex, binds to CCAAT box motif present in some plant promoter sequences. One of three members of this class (HAP2A, HAP2B, HAP2C), it is expressed in vegetative and reproductive tissues.O.I.C.G.H.G.
83.999.962.6At2g20550816577DNAJ chaperone C-terminal domain-containing proteinF:unfolded protein binding;P:protein folding;C:cellular_component unknown;BOMFPAVO.I.C.G.H.G.
82.999.996.6At2g14210815907AGL44 (AGAMOUS-LIKE 44)MADS box gene, transcription factorO.I.C.G.H.G.
81.599.9110.0At4g04955825836ATALN (Arabidopsis allantoinase)Encodes an allantoinase which is involved in allantoin degradation and assimilation. Gene expression was induced when allantoin was added to the medium. The insertion mutant, ataln m2-1, did not grow well on the MS medium where allantoin, instead of ammonium nitrate, was supplied.O.I.C.G.H.G.
81.399.975.0At3g63110825486ATIPT3 (ARABIDOPSIS THALIANA ISOPENTENYLTRANSFERASE 3)Encodes cytokinin synthase involved in cytokinin biosynthesis. IPT3 subcellular localization is modulated by farnesylation- when farnesylated it is localized to the nucleus, otherwise to the chloroplast.O.I.C.G.H.G.
79.299.938.0At2g40200818611basic helix-loop-helix (bHLH) family proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMOFBO.I.C.G.H.G.
78.399.977.7At1g55760842025BTB/POZ domain-containing proteinF:protein binding;P:biological_process unknown;C:unknown;MPOVFO.I.C.G.H.G.
77.099.9170.5At5g22250832285CCR4-NOT transcription complex protein, putativeF:ribonuclease activity, nucleic acid binding;P:RNA modification;C:nucleus;PMOFO.I.C.G.H.G.
76.099.9198.9At1g22160838821senescence-associated protein-relatedF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
75.899.9128.8At4g10380826630NIP5Essential for efficient Boron uptake and plant development under boron limitation. Also functions in arsenite transport and tolerance.O.I.C.G.H.G.
74.699.9210.6At5g51190835193AP2 domain-containing transcription factor, putativeencodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5.O.I.C.G.H.G.
74.699.951.5At1g78815844218LSH7 (LIGHT SENSITIVE HYPOCOTYLS 7)F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PMO.I.C.G.H.G.
72.199.991.0At4g01390828075-F:molecular_function unknown;P:biological_process unknown;C:unknown;POO.I.C.G.H.G.
72.199.960.7At1g12320837786unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
70.699.956.2At4g28530828971anac074 (Arabidopsis NAC domain containing protein 74)F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;PO.I.C.G.H.G.
70.599.9137.0At4g29100829031ethylene-responsive family proteinF:transcription factor activity;P:regulation of transcription;C:nucleus;OPMFO.I.C.G.H.G.
70.299.9201.3At5g65040836628senescence-associated protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
69.799.956.3At5g39100833903GLP6 (GERMIN-LIKE PROTEIN 6)germin-like protein (GLP6)O.I.C.G.H.G.
69.199.946.0At1g43650840949integral membrane family protein / nodulin MtN21-relatedF:unknown;P:unknown;C:endomembrane system, membrane;OBPAMO.I.C.G.H.G.
68.999.972.1At1g62760842574invertase/pectin methylesterase inhibitor family proteinF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:unknown;C:unknown;MOFBPVAO.I.C.G.H.G.
67.699.9188.6At4g12280826837copper amine oxidase family proteinF:amine oxidase activity, quinone binding, copper ion binding;P:cellular amine metabolic process;C:cellular_component unknown;FBMOPAO.I.C.G.H.G.
66.899.8169.1At2g18050816317HIS1-3 (HISTONE H1-3)encodes a structurally divergent linker histone whose gene expression is induced by dehydration and ABA.O.I.C.G.H.G.
65.599.837.7At3g56620824829integral membrane family protein / nodulin MtN21-relatedF:unknown;P:unknown;C:membrane;BPOAMO.I.C.G.H.G.
65.499.899.0At2g48010819413RKF3 (RECEPTOR-LIKE KINASE IN IN FLOWERS 3)receptor-like serine/threonine kinase (RKF3)O.I.C.G.H.G.
64.799.829.3At5g66770836810scarecrow transcription factor family proteinF:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;PMBFOO.I.C.G.H.G.
63.999.890.6At1g34040840301alliinase family proteinF:pyridoxal phosphate binding, carbon-sulfur lyase activity, catalytic activity;P:biological_process unknown;C:endomembrane system;PBOAFO.I.C.G.H.G.
63.899.889.7At1g01070839550nodulin MtN21 family proteinF:unknown;P:unknown;C:membrane;BPOAFMO.I.C.G.H.G.
62.299.898.9At1g72830843614NF-YA3 (NUCLEAR FACTOR Y, SUBUNIT A3)Encodes a subunit of CCAAT-binding complex, binds to CCAAT box motif present in some plant promoter sequences. One of three members of this class (HAP2A, HAP2B, HAP2C), it is expressed in vegetative and reproductive tissues.O.I.C.G.H.G.
62.199.8204.3At2g35940818167BLH1 (BEL1-LIKE HOMEODOMAIN 1)Encodes a member of the BEL-like homeodomain protein family. Ecotopic expression in the embryo sac leads to defects in nuclear migration and cellularization and embryo sacs with multiple egg cells. Loss of function alleles have no female gametophyte defects. The ecotopic expression phenotype requires KNAT3 because it can be suppressed by loss of KNAT3 function alleles. Localized to the nucleus but interaction with OFP1 relocates it to the cytoplasm.O.I.C.G.H.G.
61.699.829.1At1g55610842010BRL1 (BRI 1 LIKE)mutant has Altered vascular cell differentiation; LRR Receptor KinaseO.I.C.G.H.G.
61.299.834.0At1g23380838946KNAT6homeodomain transcription factor KNAT6, belonging to class I of KN transcription factor family (which also includes KNAT1 and KNAT2). Expression is increased in as and bop1 leaf mutants.O.I.C.G.H.G.
60.799.8142.3At1g25530839139lysine and histidine specific transporter, putativeF:amino acid transmembrane transporter activity;P:amino acid transport;C:membrane;PMFOBAO.I.C.G.H.G.
60.699.8193.0At5g49630835025AAP6 (AMINO ACID PERMEASE 6)Is a high affinity amino acid transporter capable of transporting aspartate and tryptophan. May be involved in the amino acid uptake from xylem.O.I.C.G.H.G.
60.499.813.2At2g29150817464tropinone reductase, putative / tropine dehydrogenase, putativeF:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPAVO.I.C.G.H.G.
60.399.8107.4At5g50160835081FRO8 (FERRIC REDUCTION OXIDASE 8)Encodes a ferric chelate reductase that is expressed in shoots and flowers.O.I.C.G.H.G.
59.899.8106.2At1g49320841355BURP domain-containing proteinF:molecular_function unknown;P:unknown;C:endomembrane system;PO.I.C.G.H.G.
59.699.821.9At2g27220817264BLH5 (BELL1-like homeodomain 5)F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent, regulation of transcription;C:nucleus;PMFOO.I.C.G.H.G.
59.599.849.2At4g00940827952Dof-type zinc finger domain-containing proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;POMO.I.C.G.H.G.
57.699.823.6At5g06510830539NF-YA10 (NUCLEAR FACTOR Y, SUBUNIT A10)F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:CCAAT-binding factor complex, nucleus;PMFOO.I.C.G.H.G.
56.999.8189.5At4g27652828877unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
56.999.857.8At4g36930829847SPT (SPATULA)Encodes a transcription factor of the bHLH protein family. Mutants have abnormal, unfused carpels and reduced seed dormancy.O.I.C.G.H.G.
56.199.821.0At5g65600836686legume lectin family protein / protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
55.599.8174.5At5g07580830651DNA binding / transcription factorencodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5.O.I.C.G.H.G.
55.499.877.2At5g11930831066glutaredoxin family proteinF:electron carrier activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:unknown;PMBOO.I.C.G.H.G.
54.599.855.6At1g21890838791nodulin MtN21 family proteinF:unknown;P:unknown;C:membrane;BPOAMO.I.C.G.H.G.
54.399.813.9At1g70920843431ATHB18 (Arabidopsis thaliana homeobox-leucine zipper protein 18)F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent, regulation of transcription;C:nucleus, chloroplast;MPOFVO.I.C.G.H.G.
54.299.864.9At4g14580827106CIPK4 (CBL-interacting protein kinase 4)CBL-interacting protein kinaseO.I.C.G.H.G.
54.299.844.0At3g50650824228scarecrow-like transcription factor 7 (SCL7)F:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;PMFOBVO.I.C.G.H.G.
53.399.843.6At5g06610830549unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO.I.C.G.H.G.
53.199.885.3At1g61660842462basic helix-loop-helix (bHLH) family proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMOBFO.I.C.G.H.G.
53.099.869.8At2g40330818626Bet v I allergen family proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PBOO.I.C.G.H.G.
50.399.897.2At1g18570838438MYB51 (MYB DOMAIN PROTEIN 51)Encodes a member of the R2R3-MYB transcription family. Involved in indole glucosinolate biosynthesis.O.I.C.G.H.G.
50.399.879.4At3g01860820070unknown proteinF:molecular_function unknown;P:response to cadmium ion;C:chloroplast;PMO.I.C.G.H.G.
49.699.820.9At1g48500841271JAZ4 (JASMONATE-ZIM-DOMAIN PROTEIN 4)F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.C.G.H.G.
49.199.8157.0At3g23250821904MYB15 (MYB DOMAIN PROTEIN 15)Member of the R2R3 factor gene family.O.I.C.G.H.G.
48.999.864.5At3g61880825361CYP78A9 (CYTOCHROME P450 78A9)Encodes a cytochrome p450 monooxygenase. Overexpression of this gene allows fruit growth independently of fertilization. The gene is normally expressed only in floral organs(during the Arabidopsis stage 14 flower) and in the funiculus at anthesis.O.I.C.G.H.G.
48.899.880.7At5g09460830805transcription factor/ transcription regulatorF:transcription factor activity, transcription regulator activity;P:regulation of transcription;C:nucleus;POMFO.I.C.G.H.G.
48.699.8107.5At2g29970817547heat shock protein-relatedF:unknown;P:unknown;C:cellular_component unknown;BOPFAMO.I.C.G.H.G.
48.399.866.7At3g14610820689CYP72A7putative cytochrome P450O.I.C.G.H.G.
48.199.870.6At1g11050837646protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
48.099.829.2At4g35270829680RWP-RK domain-containing proteinF:transcription factor activity;P:regulation of transcription;C:unknown;POMFBVO.I.C.G.H.G.
47.099.859.1At3g28360822465PGP16 (P-GLYCOPROTEIN 16)F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:integral to membrane;BOMAFPVO.I.C.G.H.G.
46.599.8104.0At4g33040829441glutaredoxin family proteinF:electron carrier activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:cellular_component unknown;PMFOBO.I.C.G.H.G.
45.699.897.3At5g49660835028leucine-rich repeat transmembrane protein kinase, putativeF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
45.699.886.4At3g13980820612unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFBVO.I.C.G.H.G.
45.599.859.9At4g24060828506Dof-type zinc finger domain-containing proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:cellular_component unknown;OPMFBO.I.C.G.H.G.
43.899.8130.0At1g70530843390protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVAO.I.C.G.H.G.
42.999.8105.3At5g25890832658IAA28 (INDOLE-3-ACETIC ACID INDUCIBLE 28)encodes a protein that may be a negative regulator of lateral root formation in response to auxin. It is a member of IAA/ARF gene family and is plant-specific. Gain of function mutations in this gene suppresses lateral root formation and is resistant to inhibition of root elongation by auxin, cytokinin, and ethylene.O.I.C.G.H.G.
42.799.8191.0At5g61600836281ethylene-responsive element-binding family proteinencodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5.O.I.C.G.H.G.
42.499.8126.9At1g73540843688atnudt21 (Arabidopsis thaliana Nudix hydrolase homolog 21)F:hydrolase activity;P:biological_process unknown;C:chloroplast;BMPOFAO.I.C.G.H.G.
42.299.899.9At4g18120827537AML3 (ARABIDOPSIS MEI2-LIKE 3)A member of mei2-like gene family, predominantly plant-based family of genes encoding RNA binding proteins with characteristic presence of a highly conserved RNA binding motif first described in the mei2 gene of the fission yeast S. pombe. In silico analyses reveal nine mei2 -like genes in A. thaliana. They were grouped into four distinct clades, based on overall sequence similarity and subfamily-specific sequence elements. AML3 is a member of two sister clades of mei2-like gene family, AML1 through AML5, and belongs to the clade named ALM235. Among mei2-like genes, AML3 is the transcript with highest frequency of alternative splicing. Expression was detected during early embryo development (heart and torpedo stage); no accumulation was detected in vegetative and floral apices, as revealed by in situ hybridization.O.I.C.G.H.G.
42.299.884.3At4g09890826579unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
41.899.838.0At5g44350834461ethylene-responsive nuclear protein -relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POBO.I.C.G.H.G.
41.599.885.5At5g65300836655unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
41.399.868.3At3g62150825388PGP21 (P-GLYCOPROTEIN 21)F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:plasma membrane;BOMAFPVO.I.C.G.H.G.
41.299.8182.9At4g19420827683pectinacetylesterase family proteinF:carboxylesterase activity;P:biological_process unknown;C:endomembrane system;PMOBAO.I.C.G.H.G.
41.299.8116.9At1g28370839733ERF11 (ERF DOMAIN PROTEIN 11)encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and leafy petiole.O.I.C.G.H.G.
41.299.849.7At3g23150821891ETR2 (ethylene response 2)Involved in ethylene perception in ArabidopsisO.I.C.G.H.G.
40.999.828.7At4g20370827785TSF (TWIN SISTER OF FT)Encodes a floral inducer that is a homolog of FT. Plants overexpressing this gene flower earlier than Col. Loss-of-function mutations flower later in short days. TSF and FT play overlapping roles in the promotion of flowering, with FT playing the dominant role.TSF sequences show extensive variation in different accessions and may contribute to quantitative variation in flowering time in these accessions. TSF has a complex pattern of spatial expression; it is expressed mainly in phloem and expression is regulated by daylength and vernalization.O.I.C.G.H.G.
40.899.8144.0At2g33770817943PHO2 (PHOSPHATE 2)Encodes a ubiquitin-conjugating E2 enzyme. UBC24 mRNA accumulation is suppressed by miR399f, miR399b and miR399c. Involved in phosphate starvation response.O.I.C.G.H.G.
40.899.825.9At1g33440840237proton-dependent oligopeptide transport (POT) family proteinF:transporter activity;P:oligopeptide transport;C:plasma membrane, membrane;BPMOFO.I.C.G.H.G.
40.799.896.9At4g27654828878unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
40.299.851.0At2g36970818271UDP-glucoronosyl/UDP-glucosyl transferase family proteinF:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:endomembrane system;PMBVOFO.I.C.G.H.G.
40.099.8188.8At1g18880838469proton-dependent oligopeptide transport (POT) family proteinF:transporter activity;P:oligopeptide transport;C:membrane;PMBFOO.I.C.G.H.G.
39.899.837.6At3g10120820175unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
39.799.860.2At2g22680816799zinc finger (C3HC4-type RING finger) family proteinF:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:unknown;C:unknown;PBOMFAO.I.C.G.H.G.
39.699.842.6At2g43670818969glycosyl hydrolase family protein 17F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PFO.I.C.G.H.G.
37.899.895.0At1g11210837662unknown proteinF:molecular_function unknown;P:response to oxidative stress;C:endomembrane system;POO.I.C.G.H.G.



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