CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM142639

Assay name MC002_ATH1_A6.2-dubos-5kc

GSE experiment GSE6151: The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
243.9 100.0 43.9 At3g27650 822387 LBD25 (LOB DOMAIN-CONTAINING PROTEIN 25) F:unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
157.6 99.9 74.9 At1g78815 844218 LSH7 (LIGHT SENSITIVE HYPOCOTYLS 7) F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PM O.I. C.G. H.G.
153.2 99.9 63.8 At5g23810 832446 AAP7 Encodes nonfunctional amino acid transporter. AAP7 is the most distantly related member of the AAP family, a group of well characterized amino acid transporters within the ATF1 superfamily. Expression of this gene has not been detected with RNA gel blots or promoter GUS studies. O.I. C.G. H.G.
143.3 99.9 72.8 At5g28490 832941 LSH1 (LIGHT-DEPENDENT SHORT HYPOCOTYLS 1) Encodes a nuclear protein that mediates light regulation of seedling development in a phytochrome-dependent manner. O.I. C.G. H.G.
137.9 99.9 125.3 At1g10480 837588 ZFP5 (ZINC FINGER PROTEIN 5) Encodes a zinc finger protein containing only a single zinc finger. O.I. C.G. H.G.
134.8 99.9 47.1 At5g03680 831757 PTL (PETAL LOSS) Recessive mutations are defective in organ initiation and orientation in the second whorl. This gene encodes a trihelix transcription factor whose expression is limited to margins of floral and vegetative organs. Overexpression and double mutant analyses suggest that this gene is involved in limiting lateral growth of organs. O.I. C.G. H.G.
118.8 99.9 73.6 At5g63580 836477 FLS2 (FLAVONOL SYNTHASE 2) encodes a protein whose sequence is similar to flavonol synthase O.I. C.G. H.G.
102.2 99.9 124.4 At5g60450 836166 ARF4 (AUXIN RESPONSE FACTOR 4) Encodes a member of the ARF family of transcription factors which mediate auxin responses. ARF4 appears to have redundant function with ETT(ARF3) in specifying abaxial cell identity. O.I. C.G. H.G.
97.9 99.9 111.0 At1g01070 839550 nodulin MtN21 family protein F:unknown;P:unknown;C:membrane;BPOAFM O.I. C.G. H.G.
97.7 99.9 105.9 At4g01390 828075 - F:molecular_function unknown;P:biological_process unknown;C:unknown;PO O.I. C.G. H.G.
96.5 99.9 141.6 At5g49660 835028 leucine-rich repeat transmembrane protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
93.3 99.9 63.0 At4g16000 827284 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
92.5 99.9 82.5 At1g01190 839233 CYP78A8 member of CYP78A O.I. C.G. H.G.
91.9 99.9 54.0 At4g22160 828305 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
89.6 99.9 24.1 At3g62740 825449 BGLU7 (BETA GLUCOSIDASE 7) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;BOPMFA O.I. C.G. H.G.
85.2 99.9 76.7 At3g63110 825486 ATIPT3 (ARABIDOPSIS THALIANA ISOPENTENYLTRANSFERASE 3) Encodes cytokinin synthase involved in cytokinin biosynthesis. IPT3 subcellular localization is modulated by farnesylation- when farnesylated it is localized to the nucleus, otherwise to the chloroplast. O.I. C.G. H.G.
84.4 99.9 140.7 At3g59010 825070 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFMO O.I. C.G. H.G.
81.0 99.9 72.0 At1g66140 842928 ZFP4 (ZINC FINGER PROTEIN 4) Encodes a zinc finger protein containing only a single zinc finger. O.I. C.G. H.G.
77.4 99.9 59.8 At3g25560 822143 NIK2 (NSP-INTERACTING KINASE 2) F:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA O.I. C.G. H.G.
77.0 99.9 89.5 At2g32860 817847 BGLU33 (BETA GLUCOSIDASE 33) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;BOPMFA O.I. C.G. H.G.
75.9 99.9 112.2 At3g21250 821679 ATMRP6 member of MRP subfamily O.I. C.G. H.G.
69.0 99.9 56.8 At2g20550 816577 DNAJ chaperone C-terminal domain-containing protein F:unfolded protein binding;P:protein folding;C:cellular_component unknown;BOMFPAV O.I. C.G. H.G.
68.8 99.9 66.4 At2g39850 818572 identical protein binding / serine-type endopeptidase F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:plant-type cell wall;BPOFAM O.I. C.G. H.G.
67.8 99.9 68.2 At1g46264 841110 AT-HSFB4 member of Heat Stress Transcription Factor (Hsf) family O.I. C.G. H.G.
66.2 99.8 242.5 At4g29080 829029 PAP2 (PHYTOCHROME-ASSOCIATED PROTEIN 2) phytochrome-associated protein 2 (PAP2) O.I. C.G. H.G.
65.8 99.8 229.2 At2g42610 818861 LSH10 (LIGHT SENSITIVE HYPOCOTYLS 10) F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM O.I. C.G. H.G.
65.6 99.8 57.3 At4g14060 827042 major latex protein-related / MLP-related F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P O.I. C.G. H.G.
65.1 99.8 130.3 At3g24770 822075 CLE41 (CLAVATA3/ESR-RELATED 41) Belongs to a large gene family, called CLE for CLAVATA3/ESR-related, encoding small peptides with conserved carboxyl termini. The C-terminal 12 amino acid sequence of CLE41 is identical to that of a dodeca peptide (TDIF, tracheary element differentiation inhibitory factor) isolated from Arabidopsis and functions as a suppressor of plant stem cell differentiation. TDIF sequence is also identical to the C-terminal 12 amino acids of CLE44 (At4g13195). O.I. C.G. H.G.
61.3 99.8 108.9 At1g19540 838541 isoflavone reductase, putative F:transcription repressor activity, binding, catalytic activity;P:regulation of nitrogen utilization, metabolic process;C:cellular_component unknown;BPFOVMA O.I. C.G. H.G.
60.5 99.8 29.8 At3g30340 822735 nodulin MtN21 family protein F:unknown;P:unknown;C:endomembrane system, membrane;OBPAM O.I. C.G. H.G.
60.4 99.8 32.9 At1g16530 838223 ASL9 (ASYMMETRIC LEAVES 2 LIKE 9) F:unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
59.4 99.8 62.7 At4g18610 827595 LSH9 (LIGHT SENSITIVE HYPOCOTYLS 9) F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PM O.I. C.G. H.G.
58.8 99.8 59.3 At5g53890 835470 leucine-rich repeat transmembrane protein kinase, putative Encodes a leucine-rich repeat receptor kinase (LRR-RK) involved in the perception of phytosulfokine (PSK), which is a 5-aa tyrosine-sulfated peptide that primarily promotes cellular proliferation. O.I. C.G. H.G.
58.8 99.8 27.4 At1g30160 839896 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
58.7 99.8 128.8 At5g40960 834098 unknown protein F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;P O.I. C.G. H.G.
58.1 99.8 21.8 At5g01840 831813 OFP1 (OVATE FAMILY PROTEIN 1) Encodes a member of the plant specific ovate protein family. Members of this family have been shown to bind to KNOX and BELL- like TALE class homeodomain proteins. This interaction may mediate relocalization of the TALE homeodomain from the nucleus to the cytoplasm. Functions as a transcriptional repressor that suppresses cell elongation. O.I. C.G. H.G.
57.5 99.8 70.0 At3g61880 825361 CYP78A9 (CYTOCHROME P450 78A9) Encodes a cytochrome p450 monooxygenase. Overexpression of this gene allows fruit growth independently of fertilization. The gene is normally expressed only in floral organs(during the Arabidopsis stage 14 flower) and in the funiculus at anthesis. O.I. C.G. H.G.
57.2 99.8 24.0 At3g02500 821065 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
56.9 99.8 91.6 At2g45210 819129 auxin-responsive protein-related F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO O.I. C.G. H.G.
56.0 99.8 93.8 At1g72830 843614 NF-YA3 (NUCLEAR FACTOR Y, SUBUNIT A3) Encodes a subunit of CCAAT-binding complex, binds to CCAAT box motif present in some plant promoter sequences. One of three members of this class (HAP2A, HAP2B, HAP2C), it is expressed in vegetative and reproductive tissues. O.I. C.G. H.G.
54.9 99.8 178.0 At5g65040 836628 senescence-associated protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
54.2 99.8 105.1 At3g49360 824098 glucosamine/galactosamine-6-phosphate isomerase family protein F:6-phosphogluconolactonase activity, catalytic activity;P:pentose-phosphate shunt, carbohydrate metabolic process;C:plasma membrane;BOFMP O.I. C.G. H.G.
53.9 99.8 93.4 At5g65280 836653 GCL1 (GCR2-LIKE 1) Encodes a protein with reported similarity to GCR2 a putative G protein coupled receptor thought to be an ABA receptor. Loss of function mutations in GCL1 show no ABA response defects based on assays of seed germination and seedling development.GCL1 also has similarity to LANCL1 and LANCL2, human homologs of bacterial lanthionine synthetase. O.I. C.G. H.G.
53.1 99.8 69.0 At5g66180 836750 - F:unknown;P:unknown;C:cellular_component unknown;BOMAFP O.I. C.G. H.G.
52.9 99.8 120.3 At1g19330 838515 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO O.I. C.G. H.G.
52.8 99.8 34.0 At5g48800 834938 phototropic-responsive NPH3 family protein F:protein binding, signal transducer activity;P:response to light stimulus;C:plasma membrane;P O.I. C.G. H.G.
52.2 99.8 34.4 At4g13280 826958 TPS12 (TERPENOID SYNTHASE 12) Catalyzes the conversion of farnesyl diphosphate to (Z)-gamma-bisabolene and the additional minor products E-nerolidol and alpha-bisabolol. Expressed in cortex and sub-epidermal layers of roots, leaf hydathodes and flower stigmata. Induced by wounding. O.I. C.G. H.G.
52.1 99.8 33.6 At1g03620 839448 phagocytosis and cell motility protein ELMO1-related F:molecular_function unknown;P:phagocytosis;C:cytoskeleton;MPOF O.I. C.G. H.G.
51.0 99.8 37.9 At2g28250 817371 NCRK F:kinase activity;P:xylem histogenesis;C:endosome, endomembrane system;MPOBFVA O.I. C.G. H.G.
50.9 99.8 46.7 At2g37280 818305 PDR5 (PLEIOTROPIC DRUG RESISTANCE 5) F:ATPase activity, coupled to transmembrane movement of substances;P:multidrug transport;C:plasma membrane;BOMAFPV O.I. C.G. H.G.
50.8 99.8 131.7 At5g39110 833904 germin-like protein, putative F:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PFO O.I. C.G. H.G.
50.2 99.8 29.7 At3g04510 819607 LSH2 (LIGHT SENSITIVE HYPOCOTYLS 2) F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PM O.I. C.G. H.G.
50.0 99.8 133.0 At2g04795 815023 unknown protein F:molecular_function unknown;P:response to oxidative stress;C:unknown;P O.I. C.G. H.G.
48.2 99.8 183.0 At1g12200 837773 flavin-containing monooxygenase family protein / FMO family protein F:NADP or NADPH binding, monooxygenase activity, FAD binding, flavin-containing monooxygenase activity;P:biological_process unknown;C:cellular_component unknown;BOMFPA O.I. C.G. H.G.
48.0 99.8 49.1 At3g23295 - - O.I. C.G. H.G.
47.8 99.8 112.8 At4g29100 829031 ethylene-responsive family protein F:transcription factor activity;P:regulation of transcription;C:nucleus;OPMF O.I. C.G. H.G.
47.3 99.8 93.5 At3g62960 825471 glutaredoxin family protein F:electron carrier activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:endomembrane system;PMFBO O.I. C.G. H.G.
47.1 99.8 29.8 At1g23380 838946 KNAT6 homeodomain transcription factor KNAT6, belonging to class I of KN transcription factor family (which also includes KNAT1 and KNAT2). Expression is increased in as and bop1 leaf mutants. O.I. C.G. H.G.
46.3 99.8 15.3 At1g50960 841518 GA2OX7 (GIBBERELLIN 2-OXIDASE 7) Encodes a protein with gibberellin 2-oxidase activity which acts specifically on C-20 gibberellins. DDF1 binds to GA2OX7 and regulates its expression in response to salt stress. O.I. C.G. H.G.
46.2 99.8 34.2 At4g18050 827530 PGP9 (P-GLYCOPROTEIN 9) F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:integral to membrane;BOMAFPV O.I. C.G. H.G.
46.0 99.8 51.2 At5g58980 836015 ceramidase family protein F:ceramidase activity;P:biological_process unknown;C:endomembrane system;MBFOP O.I. C.G. H.G.
45.9 99.8 181.2 At1g14890 838054 enzyme inhibitor/ pectinesterase/ pectinesterase inhibitor F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
45.9 99.8 28.6 At5g37500 833728 GORK (GATED OUTWARDLY-RECTIFYING K+ CHANNEL) encodes a guard cell outward potassium channel. Mutants have increased water consumption and limited stomatal closure in response to abscisic and jasmonic acids. It forms a heteromeric K(out) channels with SKOR. The gene is expressed ubiquitously in root and the vasculature and guard cells of leaves. Expression is suppressed during agrobacterium-induced tumor formation and increased in response to water deprivation and cold. O.I. C.G. H.G.
45.8 99.8 47.2 At4g01440 826697 nodulin MtN21 family protein F:unknown;P:unknown;C:endomembrane system, membrane;BPOAM O.I. C.G. H.G.
45.6 99.8 234.0 At1g27030 839592 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOP O.I. C.G. H.G.
45.3 99.8 118.6 At3g05690 819738 NF-YA2 (NUCLEAR FACTOR Y, SUBUNIT A2) Encodes a subunit of CCAAT-binding complex, binds to CCAAT box motif present in some plant promoter sequences. One of three members of this class (HAP2A, HAP2B, HAP2C), it is expressed in vegetative and reproductive tissues. O.I. C.G. H.G.
45.1 99.8 14.4 At5g19040 832023 IPT5 Encodes cytokinin synthase. O.I. C.G. H.G.
44.1 99.8 42.1 At2g31160 817672 LSH3 (LIGHT SENSITIVE HYPOCOTYLS 3) F:molecular_function unknown;P:biological_process unknown;C:unknown;PM O.I. C.G. H.G.
43.1 99.8 146.3 At2g23610 816893 MES3 (METHYL ESTERASE 3) Encodes a protein shown to have carboxylesterase activity, methyl IAA esterase activity, and methyl jasmonate esterase activity in vitro. This protein does not act on methyl salicylate, MeGA4, or MEGA9 in vitro. O.I. C.G. H.G.
43.0 99.8 128.8 At1g78490 844185 CYP708A3 member of CYP708A O.I. C.G. H.G.
42.9 99.8 28.1 At4g34560 829608 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
42.9 99.8 13.7 At3g43930 823509 - F:molecular_function unknown;P:biological_process unknown;C:intracellular;MFPO O.I. C.G. H.G.
42.8 99.8 94.3 At3g23290 821908 - - O.I. C.G. H.G.
42.8 99.8 71.4 At5g64550 836576 loricrin-related F:molecular_function unknown;P:unknown;C:unknown;MPOBFV O.I. C.G. H.G.
41.9 99.8 45.7 At1g17590 838335 NF-YA8 (NUCLEAR FACTOR Y, SUBUNIT A8) F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:CCAAT-binding factor complex, nucleus, chloroplast;PMFOB O.I. C.G. H.G.
41.4 99.8 33.6 At3g58790 825048 GAUT15 (Galacturonosyltransferase 15) Encodes a protein with putative galacturonosyltransferase activity. O.I. C.G. H.G.
39.9 99.8 79.3 At2g04800 815024 unknown protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;P O.I. C.G. H.G.
39.5 99.8 22.4 At1g70510 843388 KNAT2 (KNOTTED-LIKE FROM ARABIDOPSIS THALIANA 2) A member of class I knotted1-like homeobox gene family (together with KNAT1). Similar to the knotted1 (kn1) homeobox gene of maize. KNAT2 acts synergistically with cytokinins and antagonistically with ethylene based on ectopic expression studies in different mutant backgrounds and hormone treatments. In addition, KNAT2 is negatively regulated by AS and YABBY genes. KNAT2 is strongly expressed in the shoot apex of seedlings, while in mature plants the gene is primarily expressed in flowers and inflorescence stems. O.I. C.G. H.G.
38.8 99.8 66.8 At3g01670 821096 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
38.0 99.8 50.8 At5g63710 836491 leucine-rich repeat transmembrane protein kinase, putative F:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:cellular_component unknown;PMOBFVA O.I. C.G. H.G.
37.5 99.7 54.9 At5g62960 836416 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO O.I. C.G. H.G.
37.1 99.7 81.6 At1g78780 844214 pathogenesis-related family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBFM O.I. C.G. H.G.
37.1 99.7 18.9 At5g35450 833508 disease resistance protein (CC-NBS-LRR class), putative F:ATP binding;P:defense response, apoptosis;C:plasma membrane;PBMOFA O.I. C.G. H.G.
36.8 99.7 29.7 At2g01080 814636 - F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;PF O.I. C.G. H.G.
36.5 99.7 168.5 At3g54260 824593 unknown protein F:unknown;P:biological_process unknown;C:endomembrane system;PM O.I. C.G. H.G.
36.5 99.7 32.0 At3g13810 820593 AtIDD11 (Arabidopsis thaliana Indeterminate(ID)-Domain 11) F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;MOPFB O.I. C.G. H.G.
35.6 99.7 14.6 At1g77400 844076 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFBV O.I. C.G. H.G.
35.5 99.7 36.2 At1g69580 843294 transcription factor F:transcription factor activity;P:regulation of transcription;C:unknown;POMB O.I. C.G. H.G.
35.1 99.7 97.8 At2g37460 818323 nodulin MtN21 family protein F:unknown;P:unknown;C:membrane;BPOAMF O.I. C.G. H.G.
35.1 99.7 37.7 At1g36070 840511 WD-40 repeat family protein F:molecular_function unknown;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex;MBFOPA O.I. C.G. H.G.
35.0 99.7 5.8 At5g64720 836593 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
34.9 99.7 57.8 At1g72630 843595 ELF4-L2 (ELF4-Like 2) F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
34.6 99.7 60.8 At1g05710 837078 ethylene-responsive protein, putative F:transcription factor activity;P:response to ethylene stimulus, regulation of transcription;C:nucleus;P O.I. C.G. H.G.
34.3 99.7 90.4 At2g29970 817547 heat shock protein-related F:unknown;P:unknown;C:cellular_component unknown;BOPFAM O.I. C.G. H.G.
34.1 99.7 59.3 At3g61210 825293 embryo-abundant protein-related F:unknown;P:unknown;C:cellular_component unknown;BPFOMA O.I. C.G. H.G.
34.0 99.7 34.4 At3g14020 820616 NF-YA6 (NUCLEAR FACTOR Y, SUBUNIT A6) F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:CCAAT-binding factor complex, nucleus, chloroplast;PMFO O.I. C.G. H.G.
33.9 99.7 71.4 At5g64240 836545 AtMC3 (metacaspase 3) F:cysteine-type endopeptidase activity;P:proteolysis;C:unknown;BFOPA O.I. C.G. H.G.
33.9 99.7 62.8 At1g56230 842076 unknown protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;PMFO O.I. C.G. H.G.
33.8 99.7 302.1 At2g05440 815093 glycine-rich protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BMOPFVA O.I. C.G. H.G.
33.8 99.7 111.6 At5g65640 836690 bHLH093 (beta HLH protein 93) F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFO O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
243.9	100.0	43.9	At3g27650	822387	LBD25 (LOB DOMAIN-CONTAINING PROTEIN 25)	F:unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
157.6	99.9	74.9	At1g78815	844218	LSH7 (LIGHT SENSITIVE HYPOCOTYLS 7)	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PM	O.I.	C.G.	H.G.
153.2	99.9	63.8	At5g23810	832446	AAP7	Encodes nonfunctional amino acid transporter. AAP7 is the most distantly related member of the AAP family, a group of well characterized amino acid transporters within the ATF1 superfamily. Expression of this gene has not been detected with RNA gel blots or promoter GUS studies.	O.I.	C.G.	H.G.
143.3	99.9	72.8	At5g28490	832941	LSH1 (LIGHT-DEPENDENT SHORT HYPOCOTYLS 1)	Encodes a nuclear protein that mediates light regulation of seedling development in a phytochrome-dependent manner.	O.I.	C.G.	H.G.
137.9	99.9	125.3	At1g10480	837588	ZFP5 (ZINC FINGER PROTEIN 5)	Encodes a zinc finger protein containing only a single zinc finger.	O.I.	C.G.	H.G.
134.8	99.9	47.1	At5g03680	831757	PTL (PETAL LOSS)	Recessive mutations are defective in organ initiation and orientation in the second whorl. This gene encodes a trihelix transcription factor whose expression is limited to margins of floral and vegetative organs. Overexpression and double mutant analyses suggest that this gene is involved in limiting lateral growth of organs.	O.I.	C.G.	H.G.
118.8	99.9	73.6	At5g63580	836477	FLS2 (FLAVONOL SYNTHASE 2)	encodes a protein whose sequence is similar to flavonol synthase	O.I.	C.G.	H.G.
102.2	99.9	124.4	At5g60450	836166	ARF4 (AUXIN RESPONSE FACTOR 4)	Encodes a member of the ARF family of transcription factors which mediate auxin responses. ARF4 appears to have redundant function with ETT(ARF3) in specifying abaxial cell identity.	O.I.	C.G.	H.G.
97.9	99.9	111.0	At1g01070	839550	nodulin MtN21 family protein	F:unknown;P:unknown;C:membrane;BPOAFM	O.I.	C.G.	H.G.
97.7	99.9	105.9	At4g01390	828075	-	F:molecular_function unknown;P:biological_process unknown;C:unknown;PO	O.I.	C.G.	H.G.
96.5	99.9	141.6	At5g49660	835028	leucine-rich repeat transmembrane protein kinase, putative	F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
93.3	99.9	63.0	At4g16000	827284	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
92.5	99.9	82.5	At1g01190	839233	CYP78A8	member of CYP78A	O.I.	C.G.	H.G.
91.9	99.9	54.0	At4g22160	828305	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
89.6	99.9	24.1	At3g62740	825449	BGLU7 (BETA GLUCOSIDASE 7)	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;BOPMFA	O.I.	C.G.	H.G.
85.2	99.9	76.7	At3g63110	825486	ATIPT3 (ARABIDOPSIS THALIANA ISOPENTENYLTRANSFERASE 3)	Encodes cytokinin synthase involved in cytokinin biosynthesis. IPT3 subcellular localization is modulated by farnesylation- when farnesylated it is localized to the nucleus, otherwise to the chloroplast.	O.I.	C.G.	H.G.
84.4	99.9	140.7	At3g59010	825070	pectinesterase family protein	F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFMO	O.I.	C.G.	H.G.
81.0	99.9	72.0	At1g66140	842928	ZFP4 (ZINC FINGER PROTEIN 4)	Encodes a zinc finger protein containing only a single zinc finger.	O.I.	C.G.	H.G.
77.4	99.9	59.8	At3g25560	822143	NIK2 (NSP-INTERACTING KINASE 2)	F:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA	O.I.	C.G.	H.G.
77.0	99.9	89.5	At2g32860	817847	BGLU33 (BETA GLUCOSIDASE 33)	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;BOPMFA	O.I.	C.G.	H.G.
75.9	99.9	112.2	At3g21250	821679	ATMRP6	member of MRP subfamily	O.I.	C.G.	H.G.
69.0	99.9	56.8	At2g20550	816577	DNAJ chaperone C-terminal domain-containing protein	F:unfolded protein binding;P:protein folding;C:cellular_component unknown;BOMFPAV	O.I.	C.G.	H.G.
68.8	99.9	66.4	At2g39850	818572	identical protein binding / serine-type endopeptidase	F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:plant-type cell wall;BPOFAM	O.I.	C.G.	H.G.
67.8	99.9	68.2	At1g46264	841110	AT-HSFB4	member of Heat Stress Transcription Factor (Hsf) family	O.I.	C.G.	H.G.
66.2	99.8	242.5	At4g29080	829029	PAP2 (PHYTOCHROME-ASSOCIATED PROTEIN 2)	phytochrome-associated protein 2 (PAP2)	O.I.	C.G.	H.G.
65.8	99.8	229.2	At2g42610	818861	LSH10 (LIGHT SENSITIVE HYPOCOTYLS 10)	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM	O.I.	C.G.	H.G.
65.6	99.8	57.3	At4g14060	827042	major latex protein-related / MLP-related	F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P	O.I.	C.G.	H.G.
65.1	99.8	130.3	At3g24770	822075	CLE41 (CLAVATA3/ESR-RELATED 41)	Belongs to a large gene family, called CLE for CLAVATA3/ESR-related, encoding small peptides with conserved carboxyl termini. The C-terminal 12 amino acid sequence of CLE41 is identical to that of a dodeca peptide (TDIF, tracheary element differentiation inhibitory factor) isolated from Arabidopsis and functions as a suppressor of plant stem cell differentiation. TDIF sequence is also identical to the C-terminal 12 amino acids of CLE44 (At4g13195).	O.I.	C.G.	H.G.
61.3	99.8	108.9	At1g19540	838541	isoflavone reductase, putative	F:transcription repressor activity, binding, catalytic activity;P:regulation of nitrogen utilization, metabolic process;C:cellular_component unknown;BPFOVMA	O.I.	C.G.	H.G.
60.5	99.8	29.8	At3g30340	822735	nodulin MtN21 family protein	F:unknown;P:unknown;C:endomembrane system, membrane;OBPAM	O.I.	C.G.	H.G.
60.4	99.8	32.9	At1g16530	838223	ASL9 (ASYMMETRIC LEAVES 2 LIKE 9)	F:unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
59.4	99.8	62.7	At4g18610	827595	LSH9 (LIGHT SENSITIVE HYPOCOTYLS 9)	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PM	O.I.	C.G.	H.G.
58.8	99.8	59.3	At5g53890	835470	leucine-rich repeat transmembrane protein kinase, putative	Encodes a leucine-rich repeat receptor kinase (LRR-RK) involved in the perception of phytosulfokine (PSK), which is a 5-aa tyrosine-sulfated peptide that primarily promotes cellular proliferation.	O.I.	C.G.	H.G.
58.8	99.8	27.4	At1g30160	839896	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
58.7	99.8	128.8	At5g40960	834098	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;P	O.I.	C.G.	H.G.
58.1	99.8	21.8	At5g01840	831813	OFP1 (OVATE FAMILY PROTEIN 1)	Encodes a member of the plant specific ovate protein family. Members of this family have been shown to bind to KNOX and BELL- like TALE class homeodomain proteins. This interaction may mediate relocalization of the TALE homeodomain from the nucleus to the cytoplasm. Functions as a transcriptional repressor that suppresses cell elongation.	O.I.	C.G.	H.G.
57.5	99.8	70.0	At3g61880	825361	CYP78A9 (CYTOCHROME P450 78A9)	Encodes a cytochrome p450 monooxygenase. Overexpression of this gene allows fruit growth independently of fertilization. The gene is normally expressed only in floral organs(during the Arabidopsis stage 14 flower) and in the funiculus at anthesis.	O.I.	C.G.	H.G.
57.2	99.8	24.0	At3g02500	821065	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
56.9	99.8	91.6	At2g45210	819129	auxin-responsive protein-related	F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO	O.I.	C.G.	H.G.
56.0	99.8	93.8	At1g72830	843614	NF-YA3 (NUCLEAR FACTOR Y, SUBUNIT A3)	Encodes a subunit of CCAAT-binding complex, binds to CCAAT box motif present in some plant promoter sequences. One of three members of this class (HAP2A, HAP2B, HAP2C), it is expressed in vegetative and reproductive tissues.	O.I.	C.G.	H.G.
54.9	99.8	178.0	At5g65040	836628	senescence-associated protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
54.2	99.8	105.1	At3g49360	824098	glucosamine/galactosamine-6-phosphate isomerase family protein	F:6-phosphogluconolactonase activity, catalytic activity;P:pentose-phosphate shunt, carbohydrate metabolic process;C:plasma membrane;BOFMP	O.I.	C.G.	H.G.
53.9	99.8	93.4	At5g65280	836653	GCL1 (GCR2-LIKE 1)	Encodes a protein with reported similarity to GCR2 a putative G protein coupled receptor thought to be an ABA receptor. Loss of function mutations in GCL1 show no ABA response defects based on assays of seed germination and seedling development.GCL1 also has similarity to LANCL1 and LANCL2, human homologs of bacterial lanthionine synthetase.	O.I.	C.G.	H.G.
53.1	99.8	69.0	At5g66180	836750	-	F:unknown;P:unknown;C:cellular_component unknown;BOMAFP	O.I.	C.G.	H.G.
52.9	99.8	120.3	At1g19330	838515	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO	O.I.	C.G.	H.G.
52.8	99.8	34.0	At5g48800	834938	phototropic-responsive NPH3 family protein	F:protein binding, signal transducer activity;P:response to light stimulus;C:plasma membrane;P	O.I.	C.G.	H.G.
52.2	99.8	34.4	At4g13280	826958	TPS12 (TERPENOID SYNTHASE 12)	Catalyzes the conversion of farnesyl diphosphate to (Z)-gamma-bisabolene and the additional minor products E-nerolidol and alpha-bisabolol. Expressed in cortex and sub-epidermal layers of roots, leaf hydathodes and flower stigmata. Induced by wounding.	O.I.	C.G.	H.G.
52.1	99.8	33.6	At1g03620	839448	phagocytosis and cell motility protein ELMO1-related	F:molecular_function unknown;P:phagocytosis;C:cytoskeleton;MPOF	O.I.	C.G.	H.G.
51.0	99.8	37.9	At2g28250	817371	NCRK	F:kinase activity;P:xylem histogenesis;C:endosome, endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
50.9	99.8	46.7	At2g37280	818305	PDR5 (PLEIOTROPIC DRUG RESISTANCE 5)	F:ATPase activity, coupled to transmembrane movement of substances;P:multidrug transport;C:plasma membrane;BOMAFPV	O.I.	C.G.	H.G.
50.8	99.8	131.7	At5g39110	833904	germin-like protein, putative	F:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PFO	O.I.	C.G.	H.G.
50.2	99.8	29.7	At3g04510	819607	LSH2 (LIGHT SENSITIVE HYPOCOTYLS 2)	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PM	O.I.	C.G.	H.G.
50.0	99.8	133.0	At2g04795	815023	unknown protein	F:molecular_function unknown;P:response to oxidative stress;C:unknown;P	O.I.	C.G.	H.G.
48.2	99.8	183.0	At1g12200	837773	flavin-containing monooxygenase family protein / FMO family protein	F:NADP or NADPH binding, monooxygenase activity, FAD binding, flavin-containing monooxygenase activity;P:biological_process unknown;C:cellular_component unknown;BOMFPA	O.I.	C.G.	H.G.
48.0	99.8	49.1	At3g23295		-	-	O.I.	C.G.	H.G.
47.8	99.8	112.8	At4g29100	829031	ethylene-responsive family protein	F:transcription factor activity;P:regulation of transcription;C:nucleus;OPMF	O.I.	C.G.	H.G.
47.3	99.8	93.5	At3g62960	825471	glutaredoxin family protein	F:electron carrier activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:endomembrane system;PMFBO	O.I.	C.G.	H.G.
47.1	99.8	29.8	At1g23380	838946	KNAT6	homeodomain transcription factor KNAT6, belonging to class I of KN transcription factor family (which also includes KNAT1 and KNAT2). Expression is increased in as and bop1 leaf mutants.	O.I.	C.G.	H.G.
46.3	99.8	15.3	At1g50960	841518	GA2OX7 (GIBBERELLIN 2-OXIDASE 7)	Encodes a protein with gibberellin 2-oxidase activity which acts specifically on C-20 gibberellins. DDF1 binds to GA2OX7 and regulates its expression in response to salt stress.	O.I.	C.G.	H.G.
46.2	99.8	34.2	At4g18050	827530	PGP9 (P-GLYCOPROTEIN 9)	F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:integral to membrane;BOMAFPV	O.I.	C.G.	H.G.
46.0	99.8	51.2	At5g58980	836015	ceramidase family protein	F:ceramidase activity;P:biological_process unknown;C:endomembrane system;MBFOP	O.I.	C.G.	H.G.
45.9	99.8	181.2	At1g14890	838054	enzyme inhibitor/ pectinesterase/ pectinesterase inhibitor	F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
45.9	99.8	28.6	At5g37500	833728	GORK (GATED OUTWARDLY-RECTIFYING K+ CHANNEL)	encodes a guard cell outward potassium channel. Mutants have increased water consumption and limited stomatal closure in response to abscisic and jasmonic acids. It forms a heteromeric K(out) channels with SKOR. The gene is expressed ubiquitously in root and the vasculature and guard cells of leaves. Expression is suppressed during agrobacterium-induced tumor formation and increased in response to water deprivation and cold.	O.I.	C.G.	H.G.
45.8	99.8	47.2	At4g01440	826697	nodulin MtN21 family protein	F:unknown;P:unknown;C:endomembrane system, membrane;BPOAM	O.I.	C.G.	H.G.
45.6	99.8	234.0	At1g27030	839592	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOP	O.I.	C.G.	H.G.
45.3	99.8	118.6	At3g05690	819738	NF-YA2 (NUCLEAR FACTOR Y, SUBUNIT A2)	Encodes a subunit of CCAAT-binding complex, binds to CCAAT box motif present in some plant promoter sequences. One of three members of this class (HAP2A, HAP2B, HAP2C), it is expressed in vegetative and reproductive tissues.	O.I.	C.G.	H.G.
45.1	99.8	14.4	At5g19040	832023	IPT5	Encodes cytokinin synthase.	O.I.	C.G.	H.G.
44.1	99.8	42.1	At2g31160	817672	LSH3 (LIGHT SENSITIVE HYPOCOTYLS 3)	F:molecular_function unknown;P:biological_process unknown;C:unknown;PM	O.I.	C.G.	H.G.
43.1	99.8	146.3	At2g23610	816893	MES3 (METHYL ESTERASE 3)	Encodes a protein shown to have carboxylesterase activity, methyl IAA esterase activity, and methyl jasmonate esterase activity in vitro. This protein does not act on methyl salicylate, MeGA4, or MEGA9 in vitro.	O.I.	C.G.	H.G.
43.0	99.8	128.8	At1g78490	844185	CYP708A3	member of CYP708A	O.I.	C.G.	H.G.
42.9	99.8	28.1	At4g34560	829608	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
42.9	99.8	13.7	At3g43930	823509	-	F:molecular_function unknown;P:biological_process unknown;C:intracellular;MFPO	O.I.	C.G.	H.G.
42.8	99.8	94.3	At3g23290	821908	-	-	O.I.	C.G.	H.G.
42.8	99.8	71.4	At5g64550	836576	loricrin-related	F:molecular_function unknown;P:unknown;C:unknown;MPOBFV	O.I.	C.G.	H.G.
41.9	99.8	45.7	At1g17590	838335	NF-YA8 (NUCLEAR FACTOR Y, SUBUNIT A8)	F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:CCAAT-binding factor complex, nucleus, chloroplast;PMFOB	O.I.	C.G.	H.G.
41.4	99.8	33.6	At3g58790	825048	GAUT15 (Galacturonosyltransferase 15)	Encodes a protein with putative galacturonosyltransferase activity.	O.I.	C.G.	H.G.
39.9	99.8	79.3	At2g04800	815024	unknown protein	F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;P	O.I.	C.G.	H.G.
39.5	99.8	22.4	At1g70510	843388	KNAT2 (KNOTTED-LIKE FROM ARABIDOPSIS THALIANA 2)	A member of class I knotted1-like homeobox gene family (together with KNAT1). Similar to the knotted1 (kn1) homeobox gene of maize. KNAT2 acts synergistically with cytokinins and antagonistically with ethylene based on ectopic expression studies in different mutant backgrounds and hormone treatments. In addition, KNAT2 is negatively regulated by AS and YABBY genes. KNAT2 is strongly expressed in the shoot apex of seedlings, while in mature plants the gene is primarily expressed in flowers and inflorescence stems.	O.I.	C.G.	H.G.
38.8	99.8	66.8	At3g01670	821096	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
38.0	99.8	50.8	At5g63710	836491	leucine-rich repeat transmembrane protein kinase, putative	F:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:cellular_component unknown;PMOBFVA	O.I.	C.G.	H.G.
37.5	99.7	54.9	At5g62960	836416	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO	O.I.	C.G.	H.G.
37.1	99.7	81.6	At1g78780	844214	pathogenesis-related family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBFM	O.I.	C.G.	H.G.
37.1	99.7	18.9	At5g35450	833508	disease resistance protein (CC-NBS-LRR class), putative	F:ATP binding;P:defense response, apoptosis;C:plasma membrane;PBMOFA	O.I.	C.G.	H.G.
36.8	99.7	29.7	At2g01080	814636	-	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;PF	O.I.	C.G.	H.G.
36.5	99.7	168.5	At3g54260	824593	unknown protein	F:unknown;P:biological_process unknown;C:endomembrane system;PM	O.I.	C.G.	H.G.
36.5	99.7	32.0	At3g13810	820593	AtIDD11 (Arabidopsis thaliana Indeterminate(ID)-Domain 11)	F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;MOPFB	O.I.	C.G.	H.G.
35.6	99.7	14.6	At1g77400	844076	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFBV	O.I.	C.G.	H.G.
35.5	99.7	36.2	At1g69580	843294	transcription factor	F:transcription factor activity;P:regulation of transcription;C:unknown;POMB	O.I.	C.G.	H.G.
35.1	99.7	97.8	At2g37460	818323	nodulin MtN21 family protein	F:unknown;P:unknown;C:membrane;BPOAMF	O.I.	C.G.	H.G.
35.1	99.7	37.7	At1g36070	840511	WD-40 repeat family protein	F:molecular_function unknown;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex;MBFOPA	O.I.	C.G.	H.G.
35.0	99.7	5.8	At5g64720	836593	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
34.9	99.7	57.8	At1g72630	843595	ELF4-L2 (ELF4-Like 2)	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
34.6	99.7	60.8	At1g05710	837078	ethylene-responsive protein, putative	F:transcription factor activity;P:response to ethylene stimulus, regulation of transcription;C:nucleus;P	O.I.	C.G.	H.G.
34.3	99.7	90.4	At2g29970	817547	heat shock protein-related	F:unknown;P:unknown;C:cellular_component unknown;BOPFAM	O.I.	C.G.	H.G.
34.1	99.7	59.3	At3g61210	825293	embryo-abundant protein-related	F:unknown;P:unknown;C:cellular_component unknown;BPFOMA	O.I.	C.G.	H.G.
34.0	99.7	34.4	At3g14020	820616	NF-YA6 (NUCLEAR FACTOR Y, SUBUNIT A6)	F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:CCAAT-binding factor complex, nucleus, chloroplast;PMFO	O.I.	C.G.	H.G.
33.9	99.7	71.4	At5g64240	836545	AtMC3 (metacaspase 3)	F:cysteine-type endopeptidase activity;P:proteolysis;C:unknown;BFOPA	O.I.	C.G.	H.G.
33.9	99.7	62.8	At1g56230	842076	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;PMFO	O.I.	C.G.	H.G.
33.8	99.7	302.1	At2g05440	815093	glycine-rich protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BMOPFVA	O.I.	C.G.	H.G.
33.8	99.7	111.6	At5g65640	836690	bHLH093 (beta HLH protein 93)	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFO	O.I.	C.G.	H.G.

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GSM ID	GSM142639
Assay name	MC002_ATH1_A6.2-dubos-5kc
GSE experiment	GSE6151: The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis

Microarray experiments to specifically-expressed genes

GSM ID GSM142639 Assay name MC002_ATH1_A6.2-dubos-5kc GSE experiment GSE6151: The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis

GSM ID GSM142639

Assay name MC002_ATH1_A6.2-dubos-5kc

GSE experiment GSE6151: The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis