Microarray experiments to specifically-expressed genes

GSM ID GSM142639
Assay name MC002_ATH1_A6.2-dubos-5kc
GSE experiment GSE6151: The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
243.9100.043.9At3g27650822387LBD25 (LOB DOMAIN-CONTAINING PROTEIN 25)F:unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
157.699.974.9At1g78815844218LSH7 (LIGHT SENSITIVE HYPOCOTYLS 7)F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PMO.I.C.G.H.G.
153.299.963.8At5g23810832446AAP7Encodes nonfunctional amino acid transporter. AAP7 is the most distantly related member of the AAP family, a group of well characterized amino acid transporters within the ATF1 superfamily. Expression of this gene has not been detected with RNA gel blots or promoter GUS studies.O.I.C.G.H.G.
143.399.972.8At5g28490832941LSH1 (LIGHT-DEPENDENT SHORT HYPOCOTYLS 1)Encodes a nuclear protein that mediates light regulation of seedling development in a phytochrome-dependent manner.O.I.C.G.H.G.
137.999.9125.3At1g10480837588ZFP5 (ZINC FINGER PROTEIN 5)Encodes a zinc finger protein containing only a single zinc finger.O.I.C.G.H.G.
134.899.947.1At5g03680831757PTL (PETAL LOSS)Recessive mutations are defective in organ initiation and orientation in the second whorl. This gene encodes a trihelix transcription factor whose expression is limited to margins of floral and vegetative organs. Overexpression and double mutant analyses suggest that this gene is involved in limiting lateral growth of organs.O.I.C.G.H.G.
118.899.973.6At5g63580836477FLS2 (FLAVONOL SYNTHASE 2)encodes a protein whose sequence is similar to flavonol synthaseO.I.C.G.H.G.
102.299.9124.4At5g60450836166ARF4 (AUXIN RESPONSE FACTOR 4)Encodes a member of the ARF family of transcription factors which mediate auxin responses. ARF4 appears to have redundant function with ETT(ARF3) in specifying abaxial cell identity.O.I.C.G.H.G.
97.999.9111.0At1g01070839550nodulin MtN21 family proteinF:unknown;P:unknown;C:membrane;BPOAFMO.I.C.G.H.G.
97.799.9105.9At4g01390828075-F:molecular_function unknown;P:biological_process unknown;C:unknown;POO.I.C.G.H.G.
96.599.9141.6At5g49660835028leucine-rich repeat transmembrane protein kinase, putativeF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
93.399.963.0At4g16000827284unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
92.599.982.5At1g01190839233CYP78A8member of CYP78AO.I.C.G.H.G.
91.999.954.0At4g22160828305unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
89.699.924.1At3g62740825449BGLU7 (BETA GLUCOSIDASE 7)F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;BOPMFAO.I.C.G.H.G.
85.299.976.7At3g63110825486ATIPT3 (ARABIDOPSIS THALIANA ISOPENTENYLTRANSFERASE 3)Encodes cytokinin synthase involved in cytokinin biosynthesis. IPT3 subcellular localization is modulated by farnesylation- when farnesylated it is localized to the nucleus, otherwise to the chloroplast.O.I.C.G.H.G.
84.499.9140.7At3g59010825070pectinesterase family proteinF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFMOO.I.C.G.H.G.
81.099.972.0At1g66140842928ZFP4 (ZINC FINGER PROTEIN 4)Encodes a zinc finger protein containing only a single zinc finger.O.I.C.G.H.G.
77.499.959.8At3g25560822143NIK2 (NSP-INTERACTING KINASE 2)F:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVAO.I.C.G.H.G.
77.099.989.5At2g32860817847BGLU33 (BETA GLUCOSIDASE 33)F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;BOPMFAO.I.C.G.H.G.
75.999.9112.2At3g21250821679ATMRP6member of MRP subfamilyO.I.C.G.H.G.
69.099.956.8At2g20550816577DNAJ chaperone C-terminal domain-containing proteinF:unfolded protein binding;P:protein folding;C:cellular_component unknown;BOMFPAVO.I.C.G.H.G.
68.899.966.4At2g39850818572identical protein binding / serine-type endopeptidaseF:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:plant-type cell wall;BPOFAMO.I.C.G.H.G.
67.899.968.2At1g46264841110AT-HSFB4member of Heat Stress Transcription Factor (Hsf) familyO.I.C.G.H.G.
66.299.8242.5At4g29080829029PAP2 (PHYTOCHROME-ASSOCIATED PROTEIN 2)phytochrome-associated protein 2 (PAP2)O.I.C.G.H.G.
65.899.8229.2At2g42610818861LSH10 (LIGHT SENSITIVE HYPOCOTYLS 10)F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO.I.C.G.H.G.
65.699.857.3At4g14060827042major latex protein-related / MLP-relatedF:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;PO.I.C.G.H.G.
65.199.8130.3At3g24770822075CLE41 (CLAVATA3/ESR-RELATED 41)Belongs to a large gene family, called CLE for CLAVATA3/ESR-related, encoding small peptides with conserved carboxyl termini. The C-terminal 12 amino acid sequence of CLE41 is identical to that of a dodeca peptide (TDIF, tracheary element differentiation inhibitory factor) isolated from Arabidopsis and functions as a suppressor of plant stem cell differentiation. TDIF sequence is also identical to the C-terminal 12 amino acids of CLE44 (At4g13195).O.I.C.G.H.G.
61.399.8108.9At1g19540838541isoflavone reductase, putativeF:transcription repressor activity, binding, catalytic activity;P:regulation of nitrogen utilization, metabolic process;C:cellular_component unknown;BPFOVMAO.I.C.G.H.G.
60.599.829.8At3g30340822735nodulin MtN21 family proteinF:unknown;P:unknown;C:endomembrane system, membrane;OBPAMO.I.C.G.H.G.
60.499.832.9At1g16530838223ASL9 (ASYMMETRIC LEAVES 2 LIKE 9)F:unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
59.499.862.7At4g18610827595LSH9 (LIGHT SENSITIVE HYPOCOTYLS 9)F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PMO.I.C.G.H.G.
58.899.859.3At5g53890835470leucine-rich repeat transmembrane protein kinase, putativeEncodes a leucine-rich repeat receptor kinase (LRR-RK) involved in the perception of phytosulfokine (PSK), which is a 5-aa tyrosine-sulfated peptide that primarily promotes cellular proliferation.O.I.C.G.H.G.
58.899.827.4At1g30160839896unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
58.799.8128.8At5g40960834098unknown proteinF:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;PO.I.C.G.H.G.
58.199.821.8At5g01840831813OFP1 (OVATE FAMILY PROTEIN 1)Encodes a member of the plant specific ovate protein family. Members of this family have been shown to bind to KNOX and BELL- like TALE class homeodomain proteins. This interaction may mediate relocalization of the TALE homeodomain from the nucleus to the cytoplasm. Functions as a transcriptional repressor that suppresses cell elongation.O.I.C.G.H.G.
57.599.870.0At3g61880825361CYP78A9 (CYTOCHROME P450 78A9)Encodes a cytochrome p450 monooxygenase. Overexpression of this gene allows fruit growth independently of fertilization. The gene is normally expressed only in floral organs(during the Arabidopsis stage 14 flower) and in the funiculus at anthesis.O.I.C.G.H.G.
57.299.824.0At3g02500821065unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
56.999.891.6At2g45210819129auxin-responsive protein-relatedF:molecular_function unknown;P:response to auxin stimulus;C:unknown;POO.I.C.G.H.G.
56.099.893.8At1g72830843614NF-YA3 (NUCLEAR FACTOR Y, SUBUNIT A3)Encodes a subunit of CCAAT-binding complex, binds to CCAAT box motif present in some plant promoter sequences. One of three members of this class (HAP2A, HAP2B, HAP2C), it is expressed in vegetative and reproductive tissues.O.I.C.G.H.G.
54.999.8178.0At5g65040836628senescence-associated protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
54.299.8105.1At3g49360824098glucosamine/galactosamine-6-phosphate isomerase family proteinF:6-phosphogluconolactonase activity, catalytic activity;P:pentose-phosphate shunt, carbohydrate metabolic process;C:plasma membrane;BOFMPO.I.C.G.H.G.
53.999.893.4At5g65280836653GCL1 (GCR2-LIKE 1)Encodes a protein with reported similarity to GCR2 a putative G protein coupled receptor thought to be an ABA receptor. Loss of function mutations in GCL1 show no ABA response defects based on assays of seed germination and seedling development.GCL1 also has similarity to LANCL1 and LANCL2, human homologs of bacterial lanthionine synthetase.O.I.C.G.H.G.
53.199.869.0At5g66180836750-F:unknown;P:unknown;C:cellular_component unknown;BOMAFPO.I.C.G.H.G.
52.999.8120.3At1g19330838515unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOO.I.C.G.H.G.
52.899.834.0At5g48800834938phototropic-responsive NPH3 family proteinF:protein binding, signal transducer activity;P:response to light stimulus;C:plasma membrane;PO.I.C.G.H.G.
52.299.834.4At4g13280826958TPS12 (TERPENOID SYNTHASE 12)Catalyzes the conversion of farnesyl diphosphate to (Z)-gamma-bisabolene and the additional minor products E-nerolidol and alpha-bisabolol. Expressed in cortex and sub-epidermal layers of roots, leaf hydathodes and flower stigmata. Induced by wounding.O.I.C.G.H.G.
52.199.833.6At1g03620839448phagocytosis and cell motility protein ELMO1-relatedF:molecular_function unknown;P:phagocytosis;C:cytoskeleton;MPOFO.I.C.G.H.G.
51.099.837.9At2g28250817371NCRKF:kinase activity;P:xylem histogenesis;C:endosome, endomembrane system;MPOBFVAO.I.C.G.H.G.
50.999.846.7At2g37280818305PDR5 (PLEIOTROPIC DRUG RESISTANCE 5)F:ATPase activity, coupled to transmembrane movement of substances;P:multidrug transport;C:plasma membrane;BOMAFPVO.I.C.G.H.G.
50.899.8131.7At5g39110833904germin-like protein, putativeF:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PFOO.I.C.G.H.G.
50.299.829.7At3g04510819607LSH2 (LIGHT SENSITIVE HYPOCOTYLS 2)F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PMO.I.C.G.H.G.
50.099.8133.0At2g04795815023unknown proteinF:molecular_function unknown;P:response to oxidative stress;C:unknown;PO.I.C.G.H.G.
48.299.8183.0At1g12200837773flavin-containing monooxygenase family protein / FMO family proteinF:NADP or NADPH binding, monooxygenase activity, FAD binding, flavin-containing monooxygenase activity;P:biological_process unknown;C:cellular_component unknown;BOMFPAO.I.C.G.H.G.
48.099.849.1At3g23295--O.I.C.G.H.G.
47.899.8112.8At4g29100829031ethylene-responsive family proteinF:transcription factor activity;P:regulation of transcription;C:nucleus;OPMFO.I.C.G.H.G.
47.399.893.5At3g62960825471glutaredoxin family proteinF:electron carrier activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:endomembrane system;PMFBOO.I.C.G.H.G.
47.199.829.8At1g23380838946KNAT6homeodomain transcription factor KNAT6, belonging to class I of KN transcription factor family (which also includes KNAT1 and KNAT2). Expression is increased in as and bop1 leaf mutants.O.I.C.G.H.G.
46.399.815.3At1g50960841518GA2OX7 (GIBBERELLIN 2-OXIDASE 7)Encodes a protein with gibberellin 2-oxidase activity which acts specifically on C-20 gibberellins. DDF1 binds to GA2OX7 and regulates its expression in response to salt stress.O.I.C.G.H.G.
46.299.834.2At4g18050827530PGP9 (P-GLYCOPROTEIN 9)F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:integral to membrane;BOMAFPVO.I.C.G.H.G.
46.099.851.2At5g58980836015ceramidase family proteinF:ceramidase activity;P:biological_process unknown;C:endomembrane system;MBFOPO.I.C.G.H.G.
45.999.8181.2At1g14890838054enzyme inhibitor/ pectinesterase/ pectinesterase inhibitorF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
45.999.828.6At5g37500833728GORK (GATED OUTWARDLY-RECTIFYING K+ CHANNEL)encodes a guard cell outward potassium channel. Mutants have increased water consumption and limited stomatal closure in response to abscisic and jasmonic acids. It forms a heteromeric K(out) channels with SKOR. The gene is expressed ubiquitously in root and the vasculature and guard cells of leaves. Expression is suppressed during agrobacterium-induced tumor formation and increased in response to water deprivation and cold.O.I.C.G.H.G.
45.899.847.2At4g01440826697nodulin MtN21 family proteinF:unknown;P:unknown;C:endomembrane system, membrane;BPOAMO.I.C.G.H.G.
45.699.8234.0At1g27030839592unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOPO.I.C.G.H.G.
45.399.8118.6At3g05690819738NF-YA2 (NUCLEAR FACTOR Y, SUBUNIT A2)Encodes a subunit of CCAAT-binding complex, binds to CCAAT box motif present in some plant promoter sequences. One of three members of this class (HAP2A, HAP2B, HAP2C), it is expressed in vegetative and reproductive tissues.O.I.C.G.H.G.
45.199.814.4At5g19040832023IPT5Encodes cytokinin synthase.O.I.C.G.H.G.
44.199.842.1At2g31160817672LSH3 (LIGHT SENSITIVE HYPOCOTYLS 3)F:molecular_function unknown;P:biological_process unknown;C:unknown;PMO.I.C.G.H.G.
43.199.8146.3At2g23610816893MES3 (METHYL ESTERASE 3)Encodes a protein shown to have carboxylesterase activity, methyl IAA esterase activity, and methyl jasmonate esterase activity in vitro. This protein does not act on methyl salicylate, MeGA4, or MEGA9 in vitro.O.I.C.G.H.G.
43.099.8128.8At1g78490844185CYP708A3member of CYP708AO.I.C.G.H.G.
42.999.828.1At4g34560829608unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
42.999.813.7At3g43930823509-F:molecular_function unknown;P:biological_process unknown;C:intracellular;MFPOO.I.C.G.H.G.
42.899.894.3At3g23290821908--O.I.C.G.H.G.
42.899.871.4At5g64550836576loricrin-relatedF:molecular_function unknown;P:unknown;C:unknown;MPOBFVO.I.C.G.H.G.
41.999.845.7At1g17590838335NF-YA8 (NUCLEAR FACTOR Y, SUBUNIT A8)F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:CCAAT-binding factor complex, nucleus, chloroplast;PMFOBO.I.C.G.H.G.
41.499.833.6At3g58790825048GAUT15 (Galacturonosyltransferase 15)Encodes a protein with putative galacturonosyltransferase activity.O.I.C.G.H.G.
39.999.879.3At2g04800815024unknown proteinF:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;PO.I.C.G.H.G.
39.599.822.4At1g70510843388KNAT2 (KNOTTED-LIKE FROM ARABIDOPSIS THALIANA 2)A member of class I knotted1-like homeobox gene family (together with KNAT1). Similar to the knotted1 (kn1) homeobox gene of maize. KNAT2 acts synergistically with cytokinins and antagonistically with ethylene based on ectopic expression studies in different mutant backgrounds and hormone treatments. In addition, KNAT2 is negatively regulated by AS and YABBY genes. KNAT2 is strongly expressed in the shoot apex of seedlings, while in mature plants the gene is primarily expressed in flowers and inflorescence stems.O.I.C.G.H.G.
38.899.866.8At3g01670821096unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
38.099.850.8At5g63710836491leucine-rich repeat transmembrane protein kinase, putativeF:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:cellular_component unknown;PMOBFVAO.I.C.G.H.G.
37.599.754.9At5g62960836416unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOO.I.C.G.H.G.
37.199.781.6At1g78780844214pathogenesis-related family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBFMO.I.C.G.H.G.
37.199.718.9At5g35450833508disease resistance protein (CC-NBS-LRR class), putativeF:ATP binding;P:defense response, apoptosis;C:plasma membrane;PBMOFAO.I.C.G.H.G.
36.899.729.7At2g01080814636-F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;PFO.I.C.G.H.G.
36.599.7168.5At3g54260824593unknown proteinF:unknown;P:biological_process unknown;C:endomembrane system;PMO.I.C.G.H.G.
36.599.732.0At3g13810820593AtIDD11 (Arabidopsis thaliana Indeterminate(ID)-Domain 11)F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;MOPFBO.I.C.G.H.G.
35.699.714.6At1g77400844076-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFBVO.I.C.G.H.G.
35.599.736.2At1g69580843294transcription factorF:transcription factor activity;P:regulation of transcription;C:unknown;POMBO.I.C.G.H.G.
35.199.797.8At2g37460818323nodulin MtN21 family proteinF:unknown;P:unknown;C:membrane;BPOAMFO.I.C.G.H.G.
35.199.737.7At1g36070840511WD-40 repeat family proteinF:molecular_function unknown;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex;MBFOPAO.I.C.G.H.G.
35.099.75.8At5g64720836593unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
34.999.757.8At1g72630843595ELF4-L2 (ELF4-Like 2)F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.C.G.H.G.
34.699.760.8At1g05710837078ethylene-responsive protein, putativeF:transcription factor activity;P:response to ethylene stimulus, regulation of transcription;C:nucleus;PO.I.C.G.H.G.
34.399.790.4At2g29970817547heat shock protein-relatedF:unknown;P:unknown;C:cellular_component unknown;BOPFAMO.I.C.G.H.G.
34.199.759.3At3g61210825293embryo-abundant protein-relatedF:unknown;P:unknown;C:cellular_component unknown;BPFOMAO.I.C.G.H.G.
34.099.734.4At3g14020820616NF-YA6 (NUCLEAR FACTOR Y, SUBUNIT A6)F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:CCAAT-binding factor complex, nucleus, chloroplast;PMFOO.I.C.G.H.G.
33.999.771.4At5g64240836545AtMC3 (metacaspase 3)F:cysteine-type endopeptidase activity;P:proteolysis;C:unknown;BFOPAO.I.C.G.H.G.
33.999.762.8At1g56230842076unknown proteinF:molecular_function unknown;P:biological_process unknown;C:plasma membrane;PMFOO.I.C.G.H.G.
33.899.7302.1At2g05440815093glycine-rich proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BMOPFVAO.I.C.G.H.G.
33.899.7111.6At5g65640836690bHLH093 (beta HLH protein 93)F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFOO.I.C.G.H.G.



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