CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM142636

Assay name MC002_ATH1_A5.2-dubos-5kx

GSE experiment GSE6151: The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
384.3 100.0 79.6 At4g37970 829953 CAD6 (CINNAMYL ALCOHOL DEHYDROGENASE 6) F:oxidoreductase activity, binding, catalytic activity, zinc ion binding;P:oxidation reduction, metabolic process;C:cellular_component unknown;BOPFMAV O.I. C.G. H.G.
380.6 100.0 267.8 At1g49320 841355 BURP domain-containing protein F:molecular_function unknown;P:unknown;C:endomembrane system;P O.I. C.G. H.G.
348.0 100.0 65.6 At3g29670 822645 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFO O.I. C.G. H.G.
341.6 100.0 92.9 At4g25434 828648 ATNUDT10 (Arabidopsis thaliana Nudix hydrolase homolog 10) F:ADP-ribose diphosphatase activity, NAD or NADH binding, catalytic activity;P:metabolic process;C:unknown;BOMPAF O.I. C.G. H.G.
306.3 100.0 91.6 At4g15100 827176 scpl30 (serine carboxypeptidase-like 30) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PFMOB O.I. C.G. H.G.
304.7 100.0 84.7 At2g37900 818366 proton-dependent oligopeptide transport (POT) family protein F:transporter activity;P:oligopeptide transport;C:membrane;BPMOF O.I. C.G. H.G.
304.0 100.0 131.6 At2g36120 3768574 DOT1 (DEFECTIVELY ORGANIZED TRIBUTARIES 1) Encodes a glycine rich protein that is involved in leaf vascular patterning. dot1 mutants have an aberrant open-class venation pattern in leaves and cotyledons, as well as several other leaf development defects. O.I. C.G. H.G.
300.2 100.0 205.1 At2g18560 816371 UDP-glucoronosyl/UDP-glucosyl transferase family protein F:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBOVF O.I. C.G. H.G.
243.8 100.0 78.4 At2g15780 816073 glycine-rich protein F:electron carrier activity, copper ion binding;P:unknown;C:endomembrane system;MBOPFVA O.I. C.G. H.G.
216.8 100.0 58.7 At5g59305 836049 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
211.3 100.0 67.6 At1g03620 839448 phagocytosis and cell motility protein ELMO1-related F:molecular_function unknown;P:phagocytosis;C:cytoskeleton;MPOF O.I. C.G. H.G.
185.0 100.0 180.5 At4g30460 829169 glycine-rich protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MBOPFVA O.I. C.G. H.G.
183.5 100.0 154.2 At3g53960 824563 proton-dependent oligopeptide transport (POT) family protein F:transporter activity;P:oligopeptide transport;C:plasma membrane, membrane;BPMOF O.I. C.G. H.G.
160.5 99.9 201.2 At1g20160 838606 ATSBT5.2 F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:apoplast;BPOFMA O.I. C.G. H.G.
154.0 99.9 48.2 At5g28650 832971 WRKY74 member of WRKY Transcription Factor; Group II-d O.I. C.G. H.G.
150.6 99.9 48.4 At1g52700 841703 phospholipase/carboxylesterase family protein F:hydrolase activity, carboxylesterase activity;P:biological_process unknown;C:unknown;BOMFPA O.I. C.G. H.G.
149.1 99.9 132.6 At2g24762 817013 AtGDU4 (Arabidopsis thaliana GLUTAMINE DUMPER 4) F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
139.8 99.9 70.5 At1g78815 844218 LSH7 (LIGHT SENSITIVE HYPOCOTYLS 7) F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PM O.I. C.G. H.G.
139.5 99.9 86.2 At1g30840 839967 ATPUP4 Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane. O.I. C.G. H.G.
138.4 99.9 96.2 At5g10210 830885 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
138.3 99.9 112.4 At2g22680 816799 zinc finger (C3HC4-type RING finger) family protein F:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:unknown;C:unknown;PBOMFA O.I. C.G. H.G.
138.3 99.9 70.0 At3g10120 820175 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
136.1 99.9 63.5 At2g45450 819153 ZPR1 (LITTLE ZIPPER 1) ZPR1, a small leucine zipper-containing protein that interacts with REV HD-ZIPIII and is involved in the establishment of leaf polarity. O.I. C.G. H.G.
130.4 99.9 52.4 At5g64530 836574 XND1 F:transcription factor activity;P:multicellular organismal development, shoot development, xylem histogenesis, programmed cell death;C:cellular_component unknown;P O.I. C.G. H.G.
124.0 99.9 251.2 At2g33770 817943 PHO2 (PHOSPHATE 2) Encodes a ubiquitin-conjugating E2 enzyme. UBC24 mRNA accumulation is suppressed by miR399f, miR399b and miR399c. Involved in phosphate starvation response. O.I. C.G. H.G.
121.9 99.9 72.3 At2g37280 818305 PDR5 (PLEIOTROPIC DRUG RESISTANCE 5) F:ATPase activity, coupled to transmembrane movement of substances;P:multidrug transport;C:plasma membrane;BOMAFPV O.I. C.G. H.G.
118.5 99.9 127.5 At1g61660 842462 basic helix-loop-helix (bHLH) family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMOBF O.I. C.G. H.G.
116.9 99.9 72.9 At5g63580 836477 FLS2 (FLAVONOL SYNTHASE 2) encodes a protein whose sequence is similar to flavonol synthase O.I. C.G. H.G.
114.5 99.9 68.3 At4g00940 827952 Dof-type zinc finger domain-containing protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;POM O.I. C.G. H.G.
109.6 99.9 42.5 At1g33440 840237 proton-dependent oligopeptide transport (POT) family protein F:transporter activity;P:oligopeptide transport;C:plasma membrane, membrane;BPMOF O.I. C.G. H.G.
102.4 99.9 165.1 At4g29100 829031 ethylene-responsive family protein F:transcription factor activity;P:regulation of transcription;C:nucleus;OPMF O.I. C.G. H.G.
101.4 99.9 300.3 At4g29080 829029 PAP2 (PHYTOCHROME-ASSOCIATED PROTEIN 2) phytochrome-associated protein 2 (PAP2) O.I. C.G. H.G.
99.9 99.9 188.0 At2g04795 815023 unknown protein F:molecular_function unknown;P:response to oxidative stress;C:unknown;P O.I. C.G. H.G.
99.0 99.9 34.9 At4g39410 830096 WRKY13 member of WRKY Transcription Factor; Group II-c O.I. C.G. H.G.
97.8 99.9 122.5 At4g02590 828126 UNE12 (unfertilized embryo sac 12) F:transcription factor activity, DNA binding;P:double fertilization forming a zygote and endosperm, regulation of transcription;C:nucleus;PMF O.I. C.G. H.G.
95.7 99.9 155.7 At5g44400 834466 FAD-binding domain-containing protein F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:cell wall;BFOPAM O.I. C.G. H.G.
94.3 99.9 206.6 At1g52150 841645 ATHB-15 Member of the class III HD-ZIP protein family. Contains homeodomain and leucine zipper domain. Critical for vascular development and negatively regulates vascular cell differentiation. O.I. C.G. H.G.
94.1 99.9 103.5 At3g46130 823756 MYB111 (MYB DOMAIN PROTEIN 111) Encodes a putative transcription factor (MYB48) that functions to regulate flavonol biosynthesis primarily in cotyledons. O.I. C.G. H.G.
93.6 99.9 176.7 At1g25530 839139 lysine and histidine specific transporter, putative F:amino acid transmembrane transporter activity;P:amino acid transport;C:membrane;PMFOBA O.I. C.G. H.G.
93.0 99.9 134.1 At1g19540 838541 isoflavone reductase, putative F:transcription repressor activity, binding, catalytic activity;P:regulation of nitrogen utilization, metabolic process;C:cellular_component unknown;BPFOVMA O.I. C.G. H.G.
92.7 99.9 231.4 At5g65040 836628 senescence-associated protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
89.6 99.9 66.8 At1g17590 838335 NF-YA8 (NUCLEAR FACTOR Y, SUBUNIT A8) F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:CCAAT-binding factor complex, nucleus, chloroplast;PMFOB O.I. C.G. H.G.
88.4 99.9 74.4 At5g61480 836269 leucine-rich repeat transmembrane protein kinase, putative F:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA O.I. C.G. H.G.
87.9 99.9 78.0 At3g63110 825486 ATIPT3 (ARABIDOPSIS THALIANA ISOPENTENYLTRANSFERASE 3) Encodes cytokinin synthase involved in cytokinin biosynthesis. IPT3 subcellular localization is modulated by farnesylation- when farnesylated it is localized to the nucleus, otherwise to the chloroplast. O.I. C.G. H.G.
86.9 99.9 54.0 At4g39720 830127 VQ motif-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPMF O.I. C.G. H.G.
85.5 99.9 142.6 At2g29970 817547 heat shock protein-related F:unknown;P:unknown;C:cellular_component unknown;BOPFAM O.I. C.G. H.G.
82.6 99.9 62.8 At1g11080 837649 scpl31 (serine carboxypeptidase-like 31) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOB O.I. C.G. H.G.
82.2 99.9 41.1 At3g54430 824609 SRS6 (SHI-RELATED SEQUENCE 6) A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis. O.I. C.G. H.G.
80.5 99.9 209.6 At3g23430 821924 PHO1 (phosphate 1) mutant is deficient in the transfer of phosphate from root epidermal and cortical cells to the xylem. encodes protein with the mainly hydrophilic N-terminal and the C-terminal containing 6 potential membrane-spanning domains. O.I. C.G. H.G.
79.2 99.9 119.0 At1g23850 838996 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
78.8 99.9 39.9 At2g44745 819083 WRKY family transcription factor F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus;PO O.I. C.G. H.G.
78.6 99.9 40.0 At1g17230 838294 ATP binding / protein binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase F:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
78.5 99.9 90.0 At4g31730 829301 GDU1 (GLUTAMINE DUMPER 1) Glutamine dumper1 is a putative transmembrane protein. It is involved in glutamine secretion O.I. C.G. H.G.
77.9 99.9 118.3 At1g78780 844214 pathogenesis-related family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBFM O.I. C.G. H.G.
77.7 99.9 73.2 At3g48185 823974 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
77.4 99.9 23.2 At2g17260 816231 GLR2 (GLUTAMATE RECEPTOR 2) Encodes a glutamate receptor. Involved in calcium-programmed stomatal closure. O.I. C.G. H.G.
76.5 99.9 261.0 At1g18880 838469 proton-dependent oligopeptide transport (POT) family protein F:transporter activity;P:oligopeptide transport;C:membrane;PMBFO O.I. C.G. H.G.
76.4 99.9 135.1 At4g01430 826685 nodulin MtN21 family protein F:unknown;P:unknown;C:endomembrane system, membrane;PBOAMF O.I. C.G. H.G.
75.2 99.9 133.7 At5g43180 834336 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PBO O.I. C.G. H.G.
74.2 99.9 96.7 At1g01070 839550 nodulin MtN21 family protein F:unknown;P:unknown;C:membrane;BPOAFM O.I. C.G. H.G.
74.0 99.9 43.8 At1g67110 843031 CYP735A2 member of CYP709A O.I. C.G. H.G.
73.4 99.9 212.5 At5g49630 835025 AAP6 (AMINO ACID PERMEASE 6) Is a high affinity amino acid transporter capable of transporting aspartate and tryptophan. May be involved in the amino acid uptake from xylem. O.I. C.G. H.G.
73.1 99.9 36.5 At2g40200 818611 basic helix-loop-helix (bHLH) family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMOFB O.I. C.G. H.G.
72.9 99.9 63.2 At3g19370 821471 - F:unknown;P:unknown;C:plasma membrane;MOBFPAV O.I. C.G. H.G.
68.2 99.9 125.2 At4g18780 827612 IRX1 (IRREGULAR XYLEM 1) Encodes a member of the cellulose synthase family involved in secondary cell wall biosynthesis. Mutants have abnormal xylem formation, reduced cellulose content, and enhanced drought and osmotic stress tolerance. Mediates resistance towards bacterial pathogens via ABA. Confers resistance towards bacterial and fungal pathogens, independent of salicylic acid, ethylene and jasmonate signaling. O.I. C.G. H.G.
68.1 99.9 36.6 At1g79620 844301 leucine-rich repeat transmembrane protein kinase, putative F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
66.8 99.8 144.0 At3g05690 819738 NF-YA2 (NUCLEAR FACTOR Y, SUBUNIT A2) Encodes a subunit of CCAAT-binding complex, binds to CCAAT box motif present in some plant promoter sequences. One of three members of this class (HAP2A, HAP2B, HAP2C), it is expressed in vegetative and reproductive tissues. O.I. C.G. H.G.
66.0 99.8 48.5 At3g50650 824228 scarecrow-like transcription factor 7 (SCL7) F:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;PMFOBV O.I. C.G. H.G.
64.8 99.8 121.8 At3g16500 820898 PAP1 (PHYTOCHROME-ASSOCIATED PROTEIN 1) phytochrome-associated protein 1 (PAP1) O.I. C.G. H.G.
64.7 99.8 166.6 At5g44030 834426 CESA4 (CELLULOSE SYNTHASE A4) Encodes a cellulose synthase involved in secondary cell wall biosynthesis. Confers resistance towards bacterial and fungal pathogens, independent of salicylic acid, ethylene and jasmonate signaling. O.I. C.G. H.G.
62.6 99.8 63.3 At1g66140 842928 ZFP4 (ZINC FINGER PROTEIN 4) Encodes a zinc finger protein containing only a single zinc finger. O.I. C.G. H.G.
61.5 99.8 25.9 At1g31490 840039 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, quinone binding, amine oxidase activity, copper ion binding, transferase activity;P:cellular amine metabolic process;C:chloroplast;PF O.I. C.G. H.G.
61.4 99.8 225.9 At3g45160 823652 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
60.9 99.8 28.5 At1g02070 839270 unknown protein F:unknown;P:unknown;C:cellular_component unknown;P O.I. C.G. H.G.
60.5 99.8 85.8 At3g50350 824197 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
59.6 99.8 120.4 At1g49310 841354 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
59.3 99.8 45.5 At3g14020 820616 NF-YA6 (NUCLEAR FACTOR Y, SUBUNIT A6) F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:CCAAT-binding factor complex, nucleus, chloroplast;PMFO O.I. C.G. H.G.
59.3 99.8 21.6 At1g75590 843894 auxin-responsive family protein F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO O.I. C.G. H.G.
58.8 99.8 16.9 At1g17950 838374 MYB52 (MYB DOMAIN PROTEIN 52) putative transcription factor: R2R3-MYB transcription family O.I. C.G. H.G.
57.4 99.8 366.2 At5g05960 830481 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P O.I. C.G. H.G.
57.3 99.8 74.8 At4g32880 829424 ATHB-8 (HOMEOBOX GENE 8) member of homeodomain-leucine zipper family, acting as a differentiation-promoting transcription factor of the vascular meristems. O.I. C.G. H.G.
57.2 99.8 52.8 At1g22030 838808 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM O.I. C.G. H.G.
56.6 99.8 87.0 At5g09460 830805 transcription factor/ transcription regulator F:transcription factor activity, transcription regulator activity;P:regulation of transcription;C:nucleus;POMF O.I. C.G. H.G.
56.3 99.8 107.4 At4g27435 828852 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
56.2 99.8 236.9 At5g59780 836099 MYB59 (MYB DOMAIN PROTEIN 59) Encodes a putative transcription factor (MYB59). O.I. C.G. H.G.
56.0 99.8 60.1 At3g50810 824245 unknown protein F:molecular_function unknown;P:biological_process unknown;C:membrane;P O.I. C.G. H.G.
54.9 99.8 50.8 At3g54720 824637 AMP1 (ALTERED MERISTEM PROGRAM 1) Encodes glutamate carboxypeptidase. Various alleles show-increased cotyledon number and rate of leaf initiation, show transformation of leaves to cotyledons, altered flowering time and photomorphogenesis and an increased level of cytokinin biosynthesis. Involved in ethylene enhanced hypocotyl elongation in the light. Strong genetic interaction between TGH and AMP1. O.I. C.G. H.G.
54.7 99.8 92.8 At2g04800 815024 unknown protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;P O.I. C.G. H.G.
54.5 99.8 122.1 At1g19330 838515 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO O.I. C.G. H.G.
54.2 99.8 95.6 At4g09890 826579 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
53.6 99.8 117.3 At5g17420 831608 IRX3 (IRREGULAR XYLEM 3) Encodes a xylem-specific cellulose synthase that is phosphorylated on one or more serine residues (on either S185 or one of S180 or S181). O.I. C.G. H.G.
53.2 99.8 49.9 At2g20550 816577 DNAJ chaperone C-terminal domain-containing protein F:unfolded protein binding;P:protein folding;C:cellular_component unknown;BOMFPAV O.I. C.G. H.G.
53.0 99.8 164.6 At1g65500 842862 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
52.4 99.8 29.4 At1g13600 837921 AtbZIP58 (Arabidopsis thaliana basic leucine-zipper 58) F:transcription factor activity, protein heterodimerization activity, protein homodimerization activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;POMFB O.I. C.G. H.G.
52.0 99.8 214.0 At5g62680 836389 proton-dependent oligopeptide transport (POT) family protein F:transporter activity;P:oligopeptide transport;C:plasma membrane, membrane;PMBFO O.I. C.G. H.G.
51.1 99.8 29.0 At5g03680 831757 PTL (PETAL LOSS) Recessive mutations are defective in organ initiation and orientation in the second whorl. This gene encodes a trihelix transcription factor whose expression is limited to margins of floral and vegetative organs. Overexpression and double mutant analyses suggest that this gene is involved in limiting lateral growth of organs. O.I. C.G. H.G.
50.7 99.8 146.8 At2g42760 818876 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOF O.I. C.G. H.G.
49.4 99.8 112.9 At5g25890 832658 IAA28 (INDOLE-3-ACETIC ACID INDUCIBLE 28) encodes a protein that may be a negative regulator of lateral root formation in response to auxin. It is a member of IAA/ARF gene family and is plant-specific. Gain of function mutations in this gene suppresses lateral root formation and is resistant to inhibition of root elongation by auxin, cytokinin, and ethylene. O.I. C.G. H.G.
49.2 99.8 114.0 At1g31770 840064 ABC transporter family protein F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:membrane;BOMFAPV O.I. C.G. H.G.
48.8 99.8 87.5 At1g72830 843614 NF-YA3 (NUCLEAR FACTOR Y, SUBUNIT A3) Encodes a subunit of CCAAT-binding complex, binds to CCAAT box motif present in some plant promoter sequences. One of three members of this class (HAP2A, HAP2B, HAP2C), it is expressed in vegetative and reproductive tissues. O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
384.3	100.0	79.6	At4g37970	829953	CAD6 (CINNAMYL ALCOHOL DEHYDROGENASE 6)	F:oxidoreductase activity, binding, catalytic activity, zinc ion binding;P:oxidation reduction, metabolic process;C:cellular_component unknown;BOPFMAV	O.I.	C.G.	H.G.
380.6	100.0	267.8	At1g49320	841355	BURP domain-containing protein	F:molecular_function unknown;P:unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
348.0	100.0	65.6	At3g29670	822645	transferase family protein	F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFO	O.I.	C.G.	H.G.
341.6	100.0	92.9	At4g25434	828648	ATNUDT10 (Arabidopsis thaliana Nudix hydrolase homolog 10)	F:ADP-ribose diphosphatase activity, NAD or NADH binding, catalytic activity;P:metabolic process;C:unknown;BOMPAF	O.I.	C.G.	H.G.
306.3	100.0	91.6	At4g15100	827176	scpl30 (serine carboxypeptidase-like 30)	F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PFMOB	O.I.	C.G.	H.G.
304.7	100.0	84.7	At2g37900	818366	proton-dependent oligopeptide transport (POT) family protein	F:transporter activity;P:oligopeptide transport;C:membrane;BPMOF	O.I.	C.G.	H.G.
304.0	100.0	131.6	At2g36120	3768574	DOT1 (DEFECTIVELY ORGANIZED TRIBUTARIES 1)	Encodes a glycine rich protein that is involved in leaf vascular patterning. dot1 mutants have an aberrant open-class venation pattern in leaves and cotyledons, as well as several other leaf development defects.	O.I.	C.G.	H.G.
300.2	100.0	205.1	At2g18560	816371	UDP-glucoronosyl/UDP-glucosyl transferase family protein	F:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBOVF	O.I.	C.G.	H.G.
243.8	100.0	78.4	At2g15780	816073	glycine-rich protein	F:electron carrier activity, copper ion binding;P:unknown;C:endomembrane system;MBOPFVA	O.I.	C.G.	H.G.
216.8	100.0	58.7	At5g59305	836049	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
211.3	100.0	67.6	At1g03620	839448	phagocytosis and cell motility protein ELMO1-related	F:molecular_function unknown;P:phagocytosis;C:cytoskeleton;MPOF	O.I.	C.G.	H.G.
185.0	100.0	180.5	At4g30460	829169	glycine-rich protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MBOPFVA	O.I.	C.G.	H.G.
183.5	100.0	154.2	At3g53960	824563	proton-dependent oligopeptide transport (POT) family protein	F:transporter activity;P:oligopeptide transport;C:plasma membrane, membrane;BPMOF	O.I.	C.G.	H.G.
160.5	99.9	201.2	At1g20160	838606	ATSBT5.2	F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:apoplast;BPOFMA	O.I.	C.G.	H.G.
154.0	99.9	48.2	At5g28650	832971	WRKY74	member of WRKY Transcription Factor; Group II-d	O.I.	C.G.	H.G.
150.6	99.9	48.4	At1g52700	841703	phospholipase/carboxylesterase family protein	F:hydrolase activity, carboxylesterase activity;P:biological_process unknown;C:unknown;BOMFPA	O.I.	C.G.	H.G.
149.1	99.9	132.6	At2g24762	817013	AtGDU4 (Arabidopsis thaliana GLUTAMINE DUMPER 4)	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
139.8	99.9	70.5	At1g78815	844218	LSH7 (LIGHT SENSITIVE HYPOCOTYLS 7)	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PM	O.I.	C.G.	H.G.
139.5	99.9	86.2	At1g30840	839967	ATPUP4	Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane.	O.I.	C.G.	H.G.
138.4	99.9	96.2	At5g10210	830885	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
138.3	99.9	112.4	At2g22680	816799	zinc finger (C3HC4-type RING finger) family protein	F:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:unknown;C:unknown;PBOMFA	O.I.	C.G.	H.G.
138.3	99.9	70.0	At3g10120	820175	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
136.1	99.9	63.5	At2g45450	819153	ZPR1 (LITTLE ZIPPER 1)	ZPR1, a small leucine zipper-containing protein that interacts with REV HD-ZIPIII and is involved in the establishment of leaf polarity.	O.I.	C.G.	H.G.
130.4	99.9	52.4	At5g64530	836574	XND1	F:transcription factor activity;P:multicellular organismal development, shoot development, xylem histogenesis, programmed cell death;C:cellular_component unknown;P	O.I.	C.G.	H.G.
124.0	99.9	251.2	At2g33770	817943	PHO2 (PHOSPHATE 2)	Encodes a ubiquitin-conjugating E2 enzyme. UBC24 mRNA accumulation is suppressed by miR399f, miR399b and miR399c. Involved in phosphate starvation response.	O.I.	C.G.	H.G.
121.9	99.9	72.3	At2g37280	818305	PDR5 (PLEIOTROPIC DRUG RESISTANCE 5)	F:ATPase activity, coupled to transmembrane movement of substances;P:multidrug transport;C:plasma membrane;BOMAFPV	O.I.	C.G.	H.G.
118.5	99.9	127.5	At1g61660	842462	basic helix-loop-helix (bHLH) family protein	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMOBF	O.I.	C.G.	H.G.
116.9	99.9	72.9	At5g63580	836477	FLS2 (FLAVONOL SYNTHASE 2)	encodes a protein whose sequence is similar to flavonol synthase	O.I.	C.G.	H.G.
114.5	99.9	68.3	At4g00940	827952	Dof-type zinc finger domain-containing protein	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;POM	O.I.	C.G.	H.G.
109.6	99.9	42.5	At1g33440	840237	proton-dependent oligopeptide transport (POT) family protein	F:transporter activity;P:oligopeptide transport;C:plasma membrane, membrane;BPMOF	O.I.	C.G.	H.G.
102.4	99.9	165.1	At4g29100	829031	ethylene-responsive family protein	F:transcription factor activity;P:regulation of transcription;C:nucleus;OPMF	O.I.	C.G.	H.G.
101.4	99.9	300.3	At4g29080	829029	PAP2 (PHYTOCHROME-ASSOCIATED PROTEIN 2)	phytochrome-associated protein 2 (PAP2)	O.I.	C.G.	H.G.
99.9	99.9	188.0	At2g04795	815023	unknown protein	F:molecular_function unknown;P:response to oxidative stress;C:unknown;P	O.I.	C.G.	H.G.
99.0	99.9	34.9	At4g39410	830096	WRKY13	member of WRKY Transcription Factor; Group II-c	O.I.	C.G.	H.G.
97.8	99.9	122.5	At4g02590	828126	UNE12 (unfertilized embryo sac 12)	F:transcription factor activity, DNA binding;P:double fertilization forming a zygote and endosperm, regulation of transcription;C:nucleus;PMF	O.I.	C.G.	H.G.
95.7	99.9	155.7	At5g44400	834466	FAD-binding domain-containing protein	F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:cell wall;BFOPAM	O.I.	C.G.	H.G.
94.3	99.9	206.6	At1g52150	841645	ATHB-15	Member of the class III HD-ZIP protein family. Contains homeodomain and leucine zipper domain. Critical for vascular development and negatively regulates vascular cell differentiation.	O.I.	C.G.	H.G.
94.1	99.9	103.5	At3g46130	823756	MYB111 (MYB DOMAIN PROTEIN 111)	Encodes a putative transcription factor (MYB48) that functions to regulate flavonol biosynthesis primarily in cotyledons.	O.I.	C.G.	H.G.
93.6	99.9	176.7	At1g25530	839139	lysine and histidine specific transporter, putative	F:amino acid transmembrane transporter activity;P:amino acid transport;C:membrane;PMFOBA	O.I.	C.G.	H.G.
93.0	99.9	134.1	At1g19540	838541	isoflavone reductase, putative	F:transcription repressor activity, binding, catalytic activity;P:regulation of nitrogen utilization, metabolic process;C:cellular_component unknown;BPFOVMA	O.I.	C.G.	H.G.
92.7	99.9	231.4	At5g65040	836628	senescence-associated protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
89.6	99.9	66.8	At1g17590	838335	NF-YA8 (NUCLEAR FACTOR Y, SUBUNIT A8)	F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:CCAAT-binding factor complex, nucleus, chloroplast;PMFOB	O.I.	C.G.	H.G.
88.4	99.9	74.4	At5g61480	836269	leucine-rich repeat transmembrane protein kinase, putative	F:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA	O.I.	C.G.	H.G.
87.9	99.9	78.0	At3g63110	825486	ATIPT3 (ARABIDOPSIS THALIANA ISOPENTENYLTRANSFERASE 3)	Encodes cytokinin synthase involved in cytokinin biosynthesis. IPT3 subcellular localization is modulated by farnesylation- when farnesylated it is localized to the nucleus, otherwise to the chloroplast.	O.I.	C.G.	H.G.
86.9	99.9	54.0	At4g39720	830127	VQ motif-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPMF	O.I.	C.G.	H.G.
85.5	99.9	142.6	At2g29970	817547	heat shock protein-related	F:unknown;P:unknown;C:cellular_component unknown;BOPFAM	O.I.	C.G.	H.G.
82.6	99.9	62.8	At1g11080	837649	scpl31 (serine carboxypeptidase-like 31)	F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOB	O.I.	C.G.	H.G.
82.2	99.9	41.1	At3g54430	824609	SRS6 (SHI-RELATED SEQUENCE 6)	A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis.	O.I.	C.G.	H.G.
80.5	99.9	209.6	At3g23430	821924	PHO1 (phosphate 1)	mutant is deficient in the transfer of phosphate from root epidermal and cortical cells to the xylem. encodes protein with the mainly hydrophilic N-terminal and the C-terminal containing 6 potential membrane-spanning domains.	O.I.	C.G.	H.G.
79.2	99.9	119.0	At1g23850	838996	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
78.8	99.9	39.9	At2g44745	819083	WRKY family transcription factor	F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus;PO	O.I.	C.G.	H.G.
78.6	99.9	40.0	At1g17230	838294	ATP binding / protein binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase	F:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
78.5	99.9	90.0	At4g31730	829301	GDU1 (GLUTAMINE DUMPER 1)	Glutamine dumper1 is a putative transmembrane protein. It is involved in glutamine secretion	O.I.	C.G.	H.G.
77.9	99.9	118.3	At1g78780	844214	pathogenesis-related family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBFM	O.I.	C.G.	H.G.
77.7	99.9	73.2	At3g48185	823974	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
77.4	99.9	23.2	At2g17260	816231	GLR2 (GLUTAMATE RECEPTOR 2)	Encodes a glutamate receptor. Involved in calcium-programmed stomatal closure.	O.I.	C.G.	H.G.
76.5	99.9	261.0	At1g18880	838469	proton-dependent oligopeptide transport (POT) family protein	F:transporter activity;P:oligopeptide transport;C:membrane;PMBFO	O.I.	C.G.	H.G.
76.4	99.9	135.1	At4g01430	826685	nodulin MtN21 family protein	F:unknown;P:unknown;C:endomembrane system, membrane;PBOAMF	O.I.	C.G.	H.G.
75.2	99.9	133.7	At5g43180	834336	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PBO	O.I.	C.G.	H.G.
74.2	99.9	96.7	At1g01070	839550	nodulin MtN21 family protein	F:unknown;P:unknown;C:membrane;BPOAFM	O.I.	C.G.	H.G.
74.0	99.9	43.8	At1g67110	843031	CYP735A2	member of CYP709A	O.I.	C.G.	H.G.
73.4	99.9	212.5	At5g49630	835025	AAP6 (AMINO ACID PERMEASE 6)	Is a high affinity amino acid transporter capable of transporting aspartate and tryptophan. May be involved in the amino acid uptake from xylem.	O.I.	C.G.	H.G.
73.1	99.9	36.5	At2g40200	818611	basic helix-loop-helix (bHLH) family protein	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMOFB	O.I.	C.G.	H.G.
72.9	99.9	63.2	At3g19370	821471	-	F:unknown;P:unknown;C:plasma membrane;MOBFPAV	O.I.	C.G.	H.G.
68.2	99.9	125.2	At4g18780	827612	IRX1 (IRREGULAR XYLEM 1)	Encodes a member of the cellulose synthase family involved in secondary cell wall biosynthesis. Mutants have abnormal xylem formation, reduced cellulose content, and enhanced drought and osmotic stress tolerance. Mediates resistance towards bacterial pathogens via ABA. Confers resistance towards bacterial and fungal pathogens, independent of salicylic acid, ethylene and jasmonate signaling.	O.I.	C.G.	H.G.
68.1	99.9	36.6	At1g79620	844301	leucine-rich repeat transmembrane protein kinase, putative	F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
66.8	99.8	144.0	At3g05690	819738	NF-YA2 (NUCLEAR FACTOR Y, SUBUNIT A2)	Encodes a subunit of CCAAT-binding complex, binds to CCAAT box motif present in some plant promoter sequences. One of three members of this class (HAP2A, HAP2B, HAP2C), it is expressed in vegetative and reproductive tissues.	O.I.	C.G.	H.G.
66.0	99.8	48.5	At3g50650	824228	scarecrow-like transcription factor 7 (SCL7)	F:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;PMFOBV	O.I.	C.G.	H.G.
64.8	99.8	121.8	At3g16500	820898	PAP1 (PHYTOCHROME-ASSOCIATED PROTEIN 1)	phytochrome-associated protein 1 (PAP1)	O.I.	C.G.	H.G.
64.7	99.8	166.6	At5g44030	834426	CESA4 (CELLULOSE SYNTHASE A4)	Encodes a cellulose synthase involved in secondary cell wall biosynthesis. Confers resistance towards bacterial and fungal pathogens, independent of salicylic acid, ethylene and jasmonate signaling.	O.I.	C.G.	H.G.
62.6	99.8	63.3	At1g66140	842928	ZFP4 (ZINC FINGER PROTEIN 4)	Encodes a zinc finger protein containing only a single zinc finger.	O.I.	C.G.	H.G.
61.5	99.8	25.9	At1g31490	840039	transferase family protein	F:transferase activity, transferring acyl groups other than amino-acyl groups, quinone binding, amine oxidase activity, copper ion binding, transferase activity;P:cellular amine metabolic process;C:chloroplast;PF	O.I.	C.G.	H.G.
61.4	99.8	225.9	At3g45160	823652	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
60.9	99.8	28.5	At1g02070	839270	unknown protein	F:unknown;P:unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
60.5	99.8	85.8	At3g50350	824197	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
59.6	99.8	120.4	At1g49310	841354	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
59.3	99.8	45.5	At3g14020	820616	NF-YA6 (NUCLEAR FACTOR Y, SUBUNIT A6)	F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:CCAAT-binding factor complex, nucleus, chloroplast;PMFO	O.I.	C.G.	H.G.
59.3	99.8	21.6	At1g75590	843894	auxin-responsive family protein	F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO	O.I.	C.G.	H.G.
58.8	99.8	16.9	At1g17950	838374	MYB52 (MYB DOMAIN PROTEIN 52)	putative transcription factor: R2R3-MYB transcription family	O.I.	C.G.	H.G.
57.4	99.8	366.2	At5g05960	830481	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:endomembrane system;P	O.I.	C.G.	H.G.
57.3	99.8	74.8	At4g32880	829424	ATHB-8 (HOMEOBOX GENE 8)	member of homeodomain-leucine zipper family, acting as a differentiation-promoting transcription factor of the vascular meristems.	O.I.	C.G.	H.G.
57.2	99.8	52.8	At1g22030	838808	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM	O.I.	C.G.	H.G.
56.6	99.8	87.0	At5g09460	830805	transcription factor/ transcription regulator	F:transcription factor activity, transcription regulator activity;P:regulation of transcription;C:nucleus;POMF	O.I.	C.G.	H.G.
56.3	99.8	107.4	At4g27435	828852	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
56.2	99.8	236.9	At5g59780	836099	MYB59 (MYB DOMAIN PROTEIN 59)	Encodes a putative transcription factor (MYB59).	O.I.	C.G.	H.G.
56.0	99.8	60.1	At3g50810	824245	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:membrane;P	O.I.	C.G.	H.G.
54.9	99.8	50.8	At3g54720	824637	AMP1 (ALTERED MERISTEM PROGRAM 1)	Encodes glutamate carboxypeptidase. Various alleles show-increased cotyledon number and rate of leaf initiation, show transformation of leaves to cotyledons, altered flowering time and photomorphogenesis and an increased level of cytokinin biosynthesis. Involved in ethylene enhanced hypocotyl elongation in the light. Strong genetic interaction between TGH and AMP1.	O.I.	C.G.	H.G.
54.7	99.8	92.8	At2g04800	815024	unknown protein	F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;P	O.I.	C.G.	H.G.
54.5	99.8	122.1	At1g19330	838515	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO	O.I.	C.G.	H.G.
54.2	99.8	95.6	At4g09890	826579	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
53.6	99.8	117.3	At5g17420	831608	IRX3 (IRREGULAR XYLEM 3)	Encodes a xylem-specific cellulose synthase that is phosphorylated on one or more serine residues (on either S185 or one of S180 or S181).	O.I.	C.G.	H.G.
53.2	99.8	49.9	At2g20550	816577	DNAJ chaperone C-terminal domain-containing protein	F:unfolded protein binding;P:protein folding;C:cellular_component unknown;BOMFPAV	O.I.	C.G.	H.G.
53.0	99.8	164.6	At1g65500	842862	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
52.4	99.8	29.4	At1g13600	837921	AtbZIP58 (Arabidopsis thaliana basic leucine-zipper 58)	F:transcription factor activity, protein heterodimerization activity, protein homodimerization activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;POMFB	O.I.	C.G.	H.G.
52.0	99.8	214.0	At5g62680	836389	proton-dependent oligopeptide transport (POT) family protein	F:transporter activity;P:oligopeptide transport;C:plasma membrane, membrane;PMBFO	O.I.	C.G.	H.G.
51.1	99.8	29.0	At5g03680	831757	PTL (PETAL LOSS)	Recessive mutations are defective in organ initiation and orientation in the second whorl. This gene encodes a trihelix transcription factor whose expression is limited to margins of floral and vegetative organs. Overexpression and double mutant analyses suggest that this gene is involved in limiting lateral growth of organs.	O.I.	C.G.	H.G.
50.7	99.8	146.8	At2g42760	818876	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOF	O.I.	C.G.	H.G.
49.4	99.8	112.9	At5g25890	832658	IAA28 (INDOLE-3-ACETIC ACID INDUCIBLE 28)	encodes a protein that may be a negative regulator of lateral root formation in response to auxin. It is a member of IAA/ARF gene family and is plant-specific. Gain of function mutations in this gene suppresses lateral root formation and is resistant to inhibition of root elongation by auxin, cytokinin, and ethylene.	O.I.	C.G.	H.G.
49.2	99.8	114.0	At1g31770	840064	ABC transporter family protein	F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:membrane;BOMFAPV	O.I.	C.G.	H.G.
48.8	99.8	87.5	At1g72830	843614	NF-YA3 (NUCLEAR FACTOR Y, SUBUNIT A3)	Encodes a subunit of CCAAT-binding complex, binds to CCAAT box motif present in some plant promoter sequences. One of three members of this class (HAP2A, HAP2B, HAP2C), it is expressed in vegetative and reproductive tissues.	O.I.	C.G.	H.G.

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GSM ID	GSM142636
Assay name	MC002_ATH1_A5.2-dubos-5kx
GSE experiment	GSE6151: The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis

Microarray experiments to specifically-expressed genes

GSM ID GSM142636 Assay name MC002_ATH1_A5.2-dubos-5kx GSE experiment GSE6151: The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis

GSM ID GSM142636

Assay name MC002_ATH1_A5.2-dubos-5kx

GSE experiment GSE6151: The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis