Microarray experiments to specifically-expressed genes

GSM ID GSM142632
Assay name MC002_ATH1_A4.1-dubos-6kc
GSE experiment GSE6151: The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
229.3100.078.1At5g23810832446AAP7Encodes nonfunctional amino acid transporter. AAP7 is the most distantly related member of the AAP family, a group of well characterized amino acid transporters within the ATF1 superfamily. Expression of this gene has not been detected with RNA gel blots or promoter GUS studies.O.I.C.G.H.G.
222.9100.0203.0At3g62960825471glutaredoxin family proteinF:electron carrier activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:endomembrane system;PMFBOO.I.C.G.H.G.
191.4100.082.5At1g78815844218LSH7 (LIGHT SENSITIVE HYPOCOTYLS 7)F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PMO.I.C.G.H.G.
182.9100.091.2At5g63580836477FLS2 (FLAVONOL SYNTHASE 2)encodes a protein whose sequence is similar to flavonol synthaseO.I.C.G.H.G.
166.9100.027.6At5g19040832023IPT5Encodes cytokinin synthase.O.I.C.G.H.G.
166.0100.0158.6At5g60450836166ARF4 (AUXIN RESPONSE FACTOR 4)Encodes a member of the ARF family of transcription factors which mediate auxin responses. ARF4 appears to have redundant function with ETT(ARF3) in specifying abaxial cell identity.O.I.C.G.H.G.
128.899.9199.9At3g05690819738NF-YA2 (NUCLEAR FACTOR Y, SUBUNIT A2)Encodes a subunit of CCAAT-binding complex, binds to CCAAT box motif present in some plant promoter sequences. One of three members of this class (HAP2A, HAP2B, HAP2C), it is expressed in vegetative and reproductive tissues.O.I.C.G.H.G.
116.699.9284.7At1g12200837773flavin-containing monooxygenase family protein / FMO family proteinF:NADP or NADPH binding, monooxygenase activity, FAD binding, flavin-containing monooxygenase activity;P:biological_process unknown;C:cellular_component unknown;BOMFPAO.I.C.G.H.G.
105.199.966.8At4g16000827284unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
91.099.9229.2At5g65040836628senescence-associated protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
90.299.926.7At3g27650822387LBD25 (LOB DOMAIN-CONTAINING PROTEIN 25)F:unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
89.599.9118.6At1g72830843614NF-YA3 (NUCLEAR FACTOR Y, SUBUNIT A3)Encodes a subunit of CCAAT-binding complex, binds to CCAAT box motif present in some plant promoter sequences. One of three members of this class (HAP2A, HAP2B, HAP2C), it is expressed in vegetative and reproductive tissues.O.I.C.G.H.G.
84.699.927.3At1g48500841271JAZ4 (JASMONATE-ZIM-DOMAIN PROTEIN 4)F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.C.G.H.G.
83.199.953.6At5g44350834461ethylene-responsive nuclear protein -relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POBO.I.C.G.H.G.
78.499.949.0At5g595308360722-oxoglutarate-dependent dioxygenase, putativeF:transferase activity, transferring glycosyl groups;P:unknown;C:unknown;POBFMO.I.C.G.H.G.
77.899.933.8At3g30340822735nodulin MtN21 family proteinF:unknown;P:unknown;C:endomembrane system, membrane;OBPAMO.I.C.G.H.G.
74.299.917.9At3g43930823509-F:molecular_function unknown;P:biological_process unknown;C:intracellular;MFPOO.I.C.G.H.G.
73.399.997.0At1g34040840301alliinase family proteinF:pyridoxal phosphate binding, carbon-sulfur lyase activity, catalytic activity;P:biological_process unknown;C:endomembrane system;PBOAFO.I.C.G.H.G.
69.299.969.9At3g12830820465auxin-responsive family proteinF:molecular_function unknown;P:response to auxin stimulus;C:unknown;POO.I.C.G.H.G.
68.099.9204.5At5g49630835025AAP6 (AMINO ACID PERMEASE 6)Is a high affinity amino acid transporter capable of transporting aspartate and tryptophan. May be involved in the amino acid uptake from xylem.O.I.C.G.H.G.
67.499.8124.8At4g27654828878unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
65.099.844.0At5g43910834413pfkB-type carbohydrate kinase family proteinF:kinase activity, ribokinase activity;P:D-ribose metabolic process;C:cellular_component unknown;BOMPAFO.I.C.G.H.G.
61.799.846.4At3g14020820616NF-YA6 (NUCLEAR FACTOR Y, SUBUNIT A6)F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:CCAAT-binding factor complex, nucleus, chloroplast;PMFOO.I.C.G.H.G.
61.299.851.4At2g308408176352-oxoglutarate-dependent dioxygenase, putativeencodes a protein whose sequence is similar to 2-oxoglutarate-dependent dioxygenaseO.I.C.G.H.G.
60.899.8151.5At5g22250832285CCR4-NOT transcription complex protein, putativeF:ribonuclease activity, nucleic acid binding;P:RNA modification;C:nucleus;PMOFO.I.C.G.H.G.
60.199.8177.9At4g12280826837copper amine oxidase family proteinF:amine oxidase activity, quinone binding, copper ion binding;P:cellular amine metabolic process;C:cellular_component unknown;FBMOPAO.I.C.G.H.G.
58.899.845.9At5g06610830549unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO.I.C.G.H.G.
57.499.8130.7At1g77920844127bZIP family transcription factorF:transcription factor activity, calmodulin binding;P:defense response to bacterium;C:nucleus;POFMBO.I.C.G.H.G.
57.199.823.5At5g35450833508disease resistance protein (CC-NBS-LRR class), putativeF:ATP binding;P:defense response, apoptosis;C:plasma membrane;PBMOFAO.I.C.G.H.G.
56.199.8110.7At4g10380826630NIP5Essential for efficient Boron uptake and plant development under boron limitation. Also functions in arsenite transport and tolerance.O.I.C.G.H.G.
55.799.880.5At1g49230841346zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVO.I.C.G.H.G.
55.699.822.0At4g15270827193glucosyltransferase-relatedF:transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PO.I.C.G.H.G.
53.799.831.8At1g23380838946KNAT6homeodomain transcription factor KNAT6, belonging to class I of KN transcription factor family (which also includes KNAT1 and KNAT2). Expression is increased in as and bop1 leaf mutants.O.I.C.G.H.G.
53.499.851.6At1g17590838335NF-YA8 (NUCLEAR FACTOR Y, SUBUNIT A8)F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:CCAAT-binding factor complex, nucleus, chloroplast;PMFOBO.I.C.G.H.G.
53.099.8183.0At4g27652828877unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
52.999.854.1At3g15510820790ATNAC2 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 2)Note of caution: not to be confused with another protein (AtNAC6 locus AT5G39610) which on occasion has also been referred to as AtNAC2.O.I.C.G.H.G.
52.899.850.7At4g01440826697nodulin MtN21 family proteinF:unknown;P:unknown;C:endomembrane system, membrane;BPOAMO.I.C.G.H.G.
52.199.832.4At4g20370827785TSF (TWIN SISTER OF FT)Encodes a floral inducer that is a homolog of FT. Plants overexpressing this gene flower earlier than Col. Loss-of-function mutations flower later in short days. TSF and FT play overlapping roles in the promotion of flowering, with FT playing the dominant role.TSF sequences show extensive variation in different accessions and may contribute to quantitative variation in flowering time in these accessions. TSF has a complex pattern of spatial expression; it is expressed mainly in phloem and expression is regulated by daylength and vernalization.O.I.C.G.H.G.
51.299.874.3At5g11930831066glutaredoxin family proteinF:electron carrier activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:unknown;PMBOO.I.C.G.H.G.
51.099.843.4At5g28490832941LSH1 (LIGHT-DEPENDENT SHORT HYPOCOTYLS 1)Encodes a nuclear protein that mediates light regulation of seedling development in a phytochrome-dependent manner.O.I.C.G.H.G.
50.799.820.6At1g212203766770transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
49.299.848.0At2g20550816577DNAJ chaperone C-terminal domain-containing proteinF:unfolded protein binding;P:protein folding;C:cellular_component unknown;BOMFPAVO.I.C.G.H.G.
48.999.8242.5At1g27030839592unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOPO.I.C.G.H.G.
48.499.873.0At2g12290815700-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
48.199.855.0At1g66400842958calmodulin-related protein, putativeF:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;MFPOBVO.I.C.G.H.G.
47.099.812.5At3g23630821943ATIPT7Encodes an isopentenyl transferase involved in cytokinin biosynthesis.O.I.C.G.H.G.
46.699.897.5At3g49360824098glucosamine/galactosamine-6-phosphate isomerase family proteinF:6-phosphogluconolactonase activity, catalytic activity;P:pentose-phosphate shunt, carbohydrate metabolic process;C:plasma membrane;BOFMPO.I.C.G.H.G.
45.899.821.0At1g59670842257ATGSTU15 (GLUTATHIONE S-TRANSFERASE TAU 15)Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).O.I.C.G.H.G.
45.099.853.6At4g29820829104CFIM-25Encodes a homolog of the protein CFI-25, a polyadenylation factor subunit.O.I.C.G.H.G.
44.999.8173.8At2g35940818167BLH1 (BEL1-LIKE HOMEODOMAIN 1)Encodes a member of the BEL-like homeodomain protein family. Ecotopic expression in the embryo sac leads to defects in nuclear migration and cellularization and embryo sacs with multiple egg cells. Loss of function alleles have no female gametophyte defects. The ecotopic expression phenotype requires KNAT3 because it can be suppressed by loss of KNAT3 function alleles. Localized to the nucleus but interaction with OFP1 relocates it to the cytoplasm.O.I.C.G.H.G.
43.999.823.7At1g30160839896unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
43.299.8148.2At2g33770817943PHO2 (PHOSPHATE 2)Encodes a ubiquitin-conjugating E2 enzyme. UBC24 mRNA accumulation is suppressed by miR399f, miR399b and miR399c. Involved in phosphate starvation response.O.I.C.G.H.G.
43.199.850.7At5g05320830414monooxygenase, putative (MO3)F:monooxygenase activity;P:metabolic process;C:cellular_component unknown;BFOPAMO.I.C.G.H.G.
42.699.894.1At5g49660835028leucine-rich repeat transmembrane protein kinase, putativeF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
42.499.8190.2At5g61600836281ethylene-responsive element-binding family proteinencodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5.O.I.C.G.H.G.
42.499.824.4At5g58680835982armadillo/beta-catenin repeat family proteinF:binding;P:biological_process unknown;C:cellular_component unknown;MPOFBO.I.C.G.H.G.
42.299.813.0At5g66630836795DAR5 (DA1-RELATED PROTEIN 5)F:zinc ion binding;P:unknown;C:unknown;PMOBFO.I.C.G.H.G.
41.399.834.0At3g13810820593AtIDD11 (Arabidopsis thaliana Indeterminate(ID)-Domain 11)F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;MOPFBO.I.C.G.H.G.
40.999.877.1At1g24575839072unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
40.799.8116.7At4g08150826364KNAT1 (KNOTTED-LIKE FROM ARABIDOPSIS THALIANA)A member of class I knotted1-like homeobox gene family (together with KNAT2). Similar to the knotted1 (kn1) homeobox gene of maize. Normally expressed in the peripheral and rib zone of shoot apical meristem but not in the leaf primordia. It is also expressed in the fourth floral whorl, in the region that would become style, particularly in the cell surrounding the transmitting tissue. No expression was detected in the first three floral whorls. Expression is repressed by auxin and AS1 which results in the promotion of leaf fate.O.I.C.G.H.G.
40.699.851.1At4g13030826917unknown proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;BPMFOO.I.C.G.H.G.
40.399.860.4At5g18840832002sugar transporter, putativeF:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BMFPOAO.I.C.G.H.G.
40.399.820.6At4g38340829991RWP-RK domain-containing proteinF:transcription factor activity;P:regulation of transcription;C:unknown;POFBO.I.C.G.H.G.
39.999.879.2At2g04800815024unknown proteinF:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;PO.I.C.G.H.G.
39.299.8157.1At1g80530844392nodulin family proteinF:molecular_function unknown;P:biological_process unknown;C:nucleus;BPOFMAO.I.C.G.H.G.
39.299.896.3At4g18120827537AML3 (ARABIDOPSIS MEI2-LIKE 3)A member of mei2-like gene family, predominantly plant-based family of genes encoding RNA binding proteins with characteristic presence of a highly conserved RNA binding motif first described in the mei2 gene of the fission yeast S. pombe. In silico analyses reveal nine mei2 -like genes in A. thaliana. They were grouped into four distinct clades, based on overall sequence similarity and subfamily-specific sequence elements. AML3 is a member of two sister clades of mei2-like gene family, AML1 through AML5, and belongs to the clade named ALM235. Among mei2-like genes, AML3 is the transcript with highest frequency of alternative splicing. Expression was detected during early embryo development (heart and torpedo stage); no accumulation was detected in vegetative and floral apices, as revealed by in situ hybridization.O.I.C.G.H.G.
38.899.854.1At1g64160842720disease resistance-responsive family protein / dirigent family proteinF:molecular_function unknown;P:lignan biosynthetic process, defense response;C:endomembrane system;PO.I.C.G.H.G.
38.799.872.8At5g36220833619CYP81D1 (CYTOCHROME P450 81D1)member of CYP81DO.I.C.G.H.G.
38.299.854.4At4g14580827106CIPK4 (CBL-interacting protein kinase 4)CBL-interacting protein kinaseO.I.C.G.H.G.
37.999.845.9At1g12940837852ATNRT2.5 (nitrate transporter2.5)member of High affinity nitrate transporter familyO.I.C.G.H.G.
37.899.843.5At2g45660819174AGL20 (AGAMOUS-LIKE 20)Controls flowering and is required for CO to promote flowering. It acts downstream of FT. Overexpression of (SOC1) AGL20 suppresses not only the late flowering of plants that have functional FRI and FLC alleles but also the delayed phase transitions during the vegetative stages of development. AGL20/SOC1 acts with AGL24 to promote flowering and inflorescence meristem identity.AGL20 upregulates expression of AGL24 in response to GA.O.I.C.G.H.G.
37.599.7154.1At1g74450843786unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
37.299.7253.2At1g75800843913pathogenesis-related thaumatin family proteinF:molecular_function unknown;P:response to other organism;C:endomembrane system;PMFBOVAO.I.C.G.H.G.
36.599.7125.0At2g18050816317HIS1-3 (HISTONE H1-3)encodes a structurally divergent linker histone whose gene expression is induced by dehydration and ABA.O.I.C.G.H.G.
36.599.7105.3At5g61420836263MYB28 (myb domain protein 28)Encodes a nuclear localized member of the MYB transcription factor family. Involved in positive regulation of aliphatic glucosinolate biosynthesis.Expression is induced by touch, wounding and glucose.O.I.C.G.H.G.
36.099.783.5At1g62810842580copper amine oxidase, putativeF:amine oxidase activity, quinone binding, copper ion binding;P:cellular amine metabolic process;C:endomembrane system;FBMOPAO.I.C.G.H.G.
36.099.755.4At3g61880825361CYP78A9 (CYTOCHROME P450 78A9)Encodes a cytochrome p450 monooxygenase. Overexpression of this gene allows fruit growth independently of fertilization. The gene is normally expressed only in floral organs(during the Arabidopsis stage 14 flower) and in the funiculus at anthesis.O.I.C.G.H.G.
35.899.718.6At5g06510830539NF-YA10 (NUCLEAR FACTOR Y, SUBUNIT A10)F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:CCAAT-binding factor complex, nucleus;PMFOO.I.C.G.H.G.
35.799.721.3At1g70510843388KNAT2 (KNOTTED-LIKE FROM ARABIDOPSIS THALIANA 2)A member of class I knotted1-like homeobox gene family (together with KNAT1). Similar to the knotted1 (kn1) homeobox gene of maize. KNAT2 acts synergistically with cytokinins and antagonistically with ethylene based on ectopic expression studies in different mutant backgrounds and hormone treatments. In addition, KNAT2 is negatively regulated by AS and YABBY genes. KNAT2 is strongly expressed in the shoot apex of seedlings, while in mature plants the gene is primarily expressed in flowers and inflorescence stems.O.I.C.G.H.G.
35.599.751.4At3g28360822465PGP16 (P-GLYCOPROTEIN 16)F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:integral to membrane;BOMAFPVO.I.C.G.H.G.
35.499.719.6At1g69970843334CLE26 (CLAVATA3/ESR-RELATED 26)Member of a large family of putative ligands homologous to the Clavata3 gene. Consists of a single exon. Can not replace CLV3 function in vivo.O.I.C.G.H.G.
35.299.772.7At5g49520835012WRKY48member of WRKY Transcription Factor; Group II-cO.I.C.G.H.G.
35.299.744.7At1g21890838791nodulin MtN21 family proteinF:unknown;P:unknown;C:membrane;BPOAMO.I.C.G.H.G.
35.199.7167.4At2g42610818861LSH10 (LIGHT SENSITIVE HYPOCOTYLS 10)F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO.I.C.G.H.G.
34.999.784.2At1g62360842534STM (SHOOT MERISTEMLESS)Class I knotted-like homeodomain protein that is required for shoot apical meristem (SAM) formation during embryogenesis and for SAM function throughout the lifetime of the plant. Functions by preventing incorporation of cells in the meristem center into differentiating organ primordia.O.I.C.G.H.G.
34.299.733.0At4g35240829677unknown proteinF:unknown;P:N-terminal protein myristoylation;C:plasma membrane;PMFOBVO.I.C.G.H.G.
34.199.769.1At1g07530837267SCL14 (SCARECROW-LIKE 14)Encodes a member of the GRAS family of transcription factors. The protein interacts with the TGA2 transcription factor and affects the transcription of stress-responsive genes. The protein is found in the nucleus and is also exported to the cytoplasm.O.I.C.G.H.G.
33.999.7109.5At2g04795815023unknown proteinF:molecular_function unknown;P:response to oxidative stress;C:unknown;PO.I.C.G.H.G.
33.399.77.9At1g65890842901AAE12 (ACYL ACTIVATING ENZYME 12)F:catalytic activity;P:metabolic process;C:unknown;BOMFPAVO.I.C.G.H.G.
33.199.746.7At5g45250834561RPS4 (RESISTANT TO P. SYRINGAE 4)RPS4 belongs to the Toll/interleukin-1 receptor (TIR)-nucleotide binding site (NBS)-Leu-rich repeat (LRR) class of disease resistance (R ) genes. Confers specific resistance to Pseudomonas syringae pv. tomato carrying the avirulence gene AvrRPS4. Produces alternative transcripts with truncated open reading frames.O.I.C.G.H.G.
32.899.788.4At2g29970817547heat shock protein-relatedF:unknown;P:unknown;C:cellular_component unknown;BOPFAMO.I.C.G.H.G.
32.799.733.9At4g22790828378MATE efflux family proteinF:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFMAO.I.C.G.H.G.
32.699.736.3At1g36070840511WD-40 repeat family proteinF:molecular_function unknown;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex;MBFOPAO.I.C.G.H.G.
32.299.7113.2At1g31850840075dehydration-responsive protein, putativeF:unknown;P:biological_process unknown;C:Golgi apparatus;PBOFAO.I.C.G.H.G.
31.799.744.8At2g18750816390calmodulin-binding proteinF:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
31.699.730.4At3g21600821714senescence/dehydration-associated protein-relatedF:molecular_function unknown;P:biological_process unknown;C:unknown;PMFO.I.C.G.H.G.
31.599.7142.5At1g05570837059CALS1 (CALLOSE SYNTHASE 1)Encodes a callose synthase 1 catalytic subunit . Member of Glycosyltransferase Family- 48.O.I.C.G.H.G.
31.599.721.6At1g07300837241josephin protein-relatedF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
31.499.7134.4At3g44260823551CCR4-NOT transcription complex protein, putativeF:ribonuclease activity, nucleic acid binding;P:response to biotic stimulus, response to wounding, RNA modification;C:nucleus;MPOFO.I.C.G.H.G.
31.399.7109.0At1g73540843688atnudt21 (Arabidopsis thaliana Nudix hydrolase homolog 21)F:hydrolase activity;P:biological_process unknown;C:chloroplast;BMPOFAO.I.C.G.H.G.



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