Microarray experiments to specifically-expressed genes

GSM ID GSM142629
Assay name MC002_ATH1_A3.1-dubos-6kx
GSE experiment GSE6151: The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
675.7100.0108.6At1g19630838550CYP722A1member of CYP722AO.I.C.G.H.G.
373.6100.088.6At5g64530836574XND1F:transcription factor activity;P:multicellular organismal development, shoot development, xylem histogenesis, programmed cell death;C:cellular_component unknown;PO.I.C.G.H.G.
307.7100.088.1At4g25434828648ATNUDT10 (Arabidopsis thaliana Nudix hydrolase homolog 10)F:ADP-ribose diphosphatase activity, NAD or NADH binding, catalytic activity;P:metabolic process;C:unknown;BOMPAFO.I.C.G.H.G.
297.5100.0103.1At3g50650824228scarecrow-like transcription factor 7 (SCL7)F:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;PMFOBVO.I.C.G.H.G.
274.3100.0227.4At1g49320841355BURP domain-containing proteinF:molecular_function unknown;P:unknown;C:endomembrane system;PO.I.C.G.H.G.
271.7100.073.2At2g44990819107CCD7 (CAROTENOID CLEAVAGE DIOXYGENASE 7)More Axillary Branching; carotenoid cleavage dioxygenases.O.I.C.G.H.G.
260.1100.096.1At5g16080831465AtCXE17 (Arabidopsis thaliana carboxyesterase 17)F:hydrolase activity;P:metabolic process;C:cellular_component unknown;BMOPFAVO.I.C.G.H.G.
250.6100.094.3At3g10120820175unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
243.3100.054.8At3g29670822645transferase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFOO.I.C.G.H.G.
239.1100.069.6At2g44745819083WRKY family transcription factorF:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus;POO.I.C.G.H.G.
227.3100.0129.9At3g28360822465PGP16 (P-GLYCOPROTEIN 16)F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:integral to membrane;BOMAFPVO.I.C.G.H.G.
227.0100.0160.7At3g46130823756MYB111 (MYB DOMAIN PROTEIN 111)Encodes a putative transcription factor (MYB48) that functions to regulate flavonol biosynthesis primarily in cotyledons.O.I.C.G.H.G.
212.1100.079.3At2g45450819153ZPR1 (LITTLE ZIPPER 1)ZPR1, a small leucine zipper-containing protein that interacts with REV HD-ZIPIII and is involved in the establishment of leaf polarity.O.I.C.G.H.G.
198.4100.0194.8At5g50160835081FRO8 (FERRIC REDUCTION OXIDASE 8)Encodes a ferric chelate reductase that is expressed in shoots and flowers.O.I.C.G.H.G.
193.6100.0133.0At2g22680816799zinc finger (C3HC4-type RING finger) family proteinF:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:unknown;C:unknown;PBOMFAO.I.C.G.H.G.
193.3100.059.3At2g40200818611basic helix-loop-helix (bHLH) family proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMOFBO.I.C.G.H.G.
193.0100.0171.1At5g60450836166ARF4 (AUXIN RESPONSE FACTOR 4)Encodes a member of the ARF family of transcription factors which mediate auxin responses. ARF4 appears to have redundant function with ETT(ARF3) in specifying abaxial cell identity.O.I.C.G.H.G.
184.3100.0326.1At5g65040836628senescence-associated protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
175.8100.094.8At1g12320837786unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
175.3100.084.5At4g00940827952Dof-type zinc finger domain-containing proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;POMO.I.C.G.H.G.
174.2100.053.6At4g37970829953CAD6 (CINNAMYL ALCOHOL DEHYDROGENASE 6)F:oxidoreductase activity, binding, catalytic activity, zinc ion binding;P:oxidation reduction, metabolic process;C:cellular_component unknown;BOPFMAVO.I.C.G.H.G.
171.6100.0136.0At5g11930831066glutaredoxin family proteinF:electron carrier activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:unknown;PMBOO.I.C.G.H.G.
162.499.9224.4At3g05690819738NF-YA2 (NUCLEAR FACTOR Y, SUBUNIT A2)Encodes a subunit of CCAAT-binding complex, binds to CCAAT box motif present in some plant promoter sequences. One of three members of this class (HAP2A, HAP2B, HAP2C), it is expressed in vegetative and reproductive tissues.O.I.C.G.H.G.
160.299.9149.8At2g18560816371UDP-glucoronosyl/UDP-glucosyl transferase family proteinF:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBOVFO.I.C.G.H.G.
154.999.9280.7At2g33770817943PHO2 (PHOSPHATE 2)Encodes a ubiquitin-conjugating E2 enzyme. UBC24 mRNA accumulation is suppressed by miR399f, miR399b and miR399c. Involved in phosphate starvation response.O.I.C.G.H.G.
153.899.964.3At5g59050836022unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO.I.C.G.H.G.
141.399.942.0At3g28345822463ABC transporter family proteinF:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:plasma membrane;BOMAFPVO.I.C.G.H.G.
137.699.945.6At5g28650832971WRKY74member of WRKY Transcription Factor; Group II-dO.I.C.G.H.G.
136.199.9132.2At1g34040840301alliinase family proteinF:pyridoxal phosphate binding, carbon-sulfur lyase activity, catalytic activity;P:biological_process unknown;C:endomembrane system;PBOAFO.I.C.G.H.G.
132.999.9263.0At1g22160838821senescence-associated protein-relatedF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
131.099.923.9At3g43930823509-F:molecular_function unknown;P:biological_process unknown;C:intracellular;MFPOO.I.C.G.H.G.
126.599.9239.2At1g52150841645ATHB-15Member of the class III HD-ZIP protein family. Contains homeodomain and leucine zipper domain. Critical for vascular development and negatively regulates vascular cell differentiation.O.I.C.G.H.G.
124.399.940.7At1g02070839270unknown proteinF:unknown;P:unknown;C:cellular_component unknown;PO.I.C.G.H.G.
123.299.9202.7At1g25530839139lysine and histidine specific transporter, putativeF:amino acid transmembrane transporter activity;P:amino acid transport;C:membrane;PMFOBAO.I.C.G.H.G.
121.499.997.1At4g14580827106CIPK4 (CBL-interacting protein kinase 4)CBL-interacting protein kinaseO.I.C.G.H.G.
121.099.9140.7At3g13980820612unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFBVO.I.C.G.H.G.
120.399.9206.3At2g04795815023unknown proteinF:molecular_function unknown;P:response to oxidative stress;C:unknown;PO.I.C.G.H.G.
120.299.982.6At1g21890838791nodulin MtN21 family proteinF:unknown;P:unknown;C:membrane;BPOAMO.I.C.G.H.G.
117.999.964.8At1g78815844218LSH7 (LIGHT SENSITIVE HYPOCOTYLS 7)F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PMO.I.C.G.H.G.
115.299.9118.4At3g50350824197unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.C.G.H.G.
115.099.971.7At4g28530828971anac074 (Arabidopsis NAC domain containing protein 74)F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;PO.I.C.G.H.G.
114.699.9170.1At1g20160838606ATSBT5.2F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:apoplast;BPOFMAO.I.C.G.H.G.
112.299.939.8At2g40130818604heat shock protein-relatedF:unknown;P:biological_process unknown;C:unknown;PBO.I.C.G.H.G.
111.099.972.0At2g20550816577DNAJ chaperone C-terminal domain-containing proteinF:unfolded protein binding;P:protein folding;C:cellular_component unknown;BOMFPAVO.I.C.G.H.G.
107.899.9158.3At4g33040829441glutaredoxin family proteinF:electron carrier activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:cellular_component unknown;PMFOBO.I.C.G.H.G.
106.599.9133.9At4g09890826579unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
105.199.9114.9At3g01860820070unknown proteinF:molecular_function unknown;P:response to cadmium ion;C:chloroplast;PMO.I.C.G.H.G.
104.599.955.8At5g56460835747protein kinase, putativeF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:plasma membrane;MPOBFVAO.I.C.G.H.G.
103.799.9166.1At4g29100829031ethylene-responsive family proteinF:transcription factor activity;P:regulation of transcription;C:nucleus;OPMFO.I.C.G.H.G.
102.499.9165.3At5g16570831519GLN1Encodes a cytosolic glutamine synthetase, the enzyme has high affinity with substrate ammoniumO.I.C.G.H.G.
102.499.9134.3At4g30460829169glycine-rich proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MBOPFVAO.I.C.G.H.G.
101.299.928.5At2g27220817264BLH5 (BELL1-like homeodomain 5)F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent, regulation of transcription;C:nucleus;PMFOO.I.C.G.H.G.
100.399.9248.5At5g49630835025AAP6 (AMINO ACID PERMEASE 6)Is a high affinity amino acid transporter capable of transporting aspartate and tryptophan. May be involved in the amino acid uptake from xylem.O.I.C.G.H.G.
98.399.966.9At5g63580836477FLS2 (FLAVONOL SYNTHASE 2)encodes a protein whose sequence is similar to flavonol synthaseO.I.C.G.H.G.
95.799.981.2At3g48185823974unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
91.799.952.8At1g16310838200cation efflux family proteinF:cation transmembrane transporter activity;P:cation transport;C:membrane;BOFPAMO.I.C.G.H.G.
89.799.9106.3At1g01070839550nodulin MtN21 family proteinF:unknown;P:unknown;C:membrane;BPOAFMO.I.C.G.H.G.
88.299.9144.8At2g29970817547heat shock protein-relatedF:unknown;P:unknown;C:cellular_component unknown;BOPFAMO.I.C.G.H.G.
87.099.9100.6At1g49230841346zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVO.I.C.G.H.G.
86.899.929.6At4g33450829482MYB69 (MYB DOMAIN PROTEIN 69)Member of the R2R3 factor gene family.O.I.C.G.H.G.
86.799.9173.2At4g09760826564choline kinase, putativeencodes a choline synthase whose gene expression is induced by high salt and mannitol.O.I.C.G.H.G.
84.699.9147.8At5g25890832658IAA28 (INDOLE-3-ACETIC ACID INDUCIBLE 28)encodes a protein that may be a negative regulator of lateral root formation in response to auxin. It is a member of IAA/ARF gene family and is plant-specific. Gain of function mutations in this gene suppresses lateral root formation and is resistant to inhibition of root elongation by auxin, cytokinin, and ethylene.O.I.C.G.H.G.
83.099.9126.3At4g24120828512YSL1 (YELLOW STRIPE LIKE 1)Member of a small family of oligopeptide transporters similar to the yellow stripe locus of maize (ZmYS1).O.I.C.G.H.G.
82.499.928.2At5g35450833508disease resistance protein (CC-NBS-LRR class), putativeF:ATP binding;P:defense response, apoptosis;C:plasma membrane;PBMOFAO.I.C.G.H.G.
82.299.9129.3At1g62360842534STM (SHOOT MERISTEMLESS)Class I knotted-like homeodomain protein that is required for shoot apical meristem (SAM) formation during embryogenesis and for SAM function throughout the lifetime of the plant. Functions by preventing incorporation of cells in the meristem center into differentiating organ primordia.O.I.C.G.H.G.
81.799.923.9At2g17260816231GLR2 (GLUTAMATE RECEPTOR 2)Encodes a glutamate receptor. Involved in calcium-programmed stomatal closure.O.I.C.G.H.G.
81.299.9105.6At1g61660842462basic helix-loop-helix (bHLH) family proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMOBFO.I.C.G.H.G.
80.599.937.3At3g51480824311ATGLR3.6 (GLUTAMATE RECEPTOR 3.6)member of Putative ligand-gated ion channel subunit familyO.I.C.G.H.G.
79.999.9103.3At5g09460830805transcription factor/ transcription regulatorF:transcription factor activity, transcription regulator activity;P:regulation of transcription;C:nucleus;POMFO.I.C.G.H.G.
79.599.961.6At1g11080837649scpl31 (serine carboxypeptidase-like 31)F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOBO.I.C.G.H.G.
78.799.9203.6At4g12280826837copper amine oxidase family proteinF:amine oxidase activity, quinone binding, copper ion binding;P:cellular amine metabolic process;C:cellular_component unknown;FBMOPAO.I.C.G.H.G.
78.199.951.2At4g39720830127VQ motif-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPMFO.I.C.G.H.G.
77.699.919.4At1g17950838374MYB52 (MYB DOMAIN PROTEIN 52)putative transcription factor: R2R3-MYB transcription familyO.I.C.G.H.G.
77.599.935.7At1g33440840237proton-dependent oligopeptide transport (POT) family proteinF:transporter activity;P:oligopeptide transport;C:plasma membrane, membrane;BPMOFO.I.C.G.H.G.
76.799.930.7At4g39410830096WRKY13member of WRKY Transcription Factor; Group II-cO.I.C.G.H.G.
76.599.961.7At1g17590838335NF-YA8 (NUCLEAR FACTOR Y, SUBUNIT A8)F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:CCAAT-binding factor complex, nucleus, chloroplast;PMFOBO.I.C.G.H.G.
75.399.948.0At5g595308360722-oxoglutarate-dependent dioxygenase, putativeF:transferase activity, transferring glycosyl groups;P:unknown;C:unknown;POBFMO.I.C.G.H.G.
72.199.954.0At1g36070840511WD-40 repeat family proteinF:molecular_function unknown;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex;MBFOPAO.I.C.G.H.G.
69.399.9248.5At1g18880838469proton-dependent oligopeptide transport (POT) family proteinF:transporter activity;P:oligopeptide transport;C:membrane;PMBFOO.I.C.G.H.G.
69.199.9104.2At1g72830843614NF-YA3 (NUCLEAR FACTOR Y, SUBUNIT A3)Encodes a subunit of CCAAT-binding complex, binds to CCAAT box motif present in some plant promoter sequences. One of three members of this class (HAP2A, HAP2B, HAP2C), it is expressed in vegetative and reproductive tissues.O.I.C.G.H.G.
68.399.9101.5At4g14465827093DNA-binding protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBMO.I.C.G.H.G.
67.299.855.5At1g76800844014nodulin, putativeF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOPFAO.I.C.G.H.G.
66.199.838.1At1g78110844147unknown proteinF:molecular_function unknown;P:biological_process unknown;C:plasma membrane;OMFVPBAO.I.C.G.H.G.
64.699.899.6At4g02590828126UNE12 (unfertilized embryo sac 12)F:transcription factor activity, DNA binding;P:double fertilization forming a zygote and endosperm, regulation of transcription;C:nucleus;PMFO.I.C.G.H.G.
64.699.835.8At4g37580829913HLS1 (HOOKLESS 1)involved in apical hook development. putative N-acetyltransferaseO.I.C.G.H.G.
63.699.863.8At4g29820829104CFIM-25Encodes a homolog of the protein CFI-25, a polyadenylation factor subunit.O.I.C.G.H.G.
63.099.8122.8At4g01430826685nodulin MtN21 family proteinF:unknown;P:unknown;C:endomembrane system, membrane;PBOAMFO.I.C.G.H.G.
63.099.8122.1At4g18120827537AML3 (ARABIDOPSIS MEI2-LIKE 3)A member of mei2-like gene family, predominantly plant-based family of genes encoding RNA binding proteins with characteristic presence of a highly conserved RNA binding motif first described in the mei2 gene of the fission yeast S. pombe. In silico analyses reveal nine mei2 -like genes in A. thaliana. They were grouped into four distinct clades, based on overall sequence similarity and subfamily-specific sequence elements. AML3 is a member of two sister clades of mei2-like gene family, AML1 through AML5, and belongs to the clade named ALM235. Among mei2-like genes, AML3 is the transcript with highest frequency of alternative splicing. Expression was detected during early embryo development (heart and torpedo stage); no accumulation was detected in vegetative and floral apices, as revealed by in situ hybridization.O.I.C.G.H.G.
62.899.8192.1At2g22860816817ATPSK2 (PHYTOSULFOKINE 2 PRECURSOR)Phytosulfokine 2 precursor, coding for a unique plant peptide growth factor.O.I.C.G.H.G.
61.999.861.2At3g05650819732AtRLP32 (Receptor Like Protein 32)F:protein binding, kinase activity;P:signal transduction, defense response;C:endomembrane system;PMOBFAVO.I.C.G.H.G.
61.899.824.5At5g06510830539NF-YA10 (NUCLEAR FACTOR Y, SUBUNIT A10)F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:CCAAT-binding factor complex, nucleus;PMFOO.I.C.G.H.G.
60.699.8108.4At1g62810842580copper amine oxidase, putativeF:amine oxidase activity, quinone binding, copper ion binding;P:cellular amine metabolic process;C:endomembrane system;FBMOPAO.I.C.G.H.G.
59.699.8243.9At5g59780836099MYB59 (MYB DOMAIN PROTEIN 59)Encodes a putative transcription factor (MYB59).O.I.C.G.H.G.
59.299.861.6At4g13030826917unknown proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;BPMFOO.I.C.G.H.G.
58.199.835.5At3g56620824829integral membrane family protein / nodulin MtN21-relatedF:unknown;P:unknown;C:membrane;BPOAMO.I.C.G.H.G.
56.899.8262.0At2g19810816500zinc finger (CCCH-type) family proteinF:transcription factor activity, nucleic acid binding;P:regulation of transcription;C:unknown;POMO.I.C.G.H.G.
56.799.843.5At3g11100820281transcription factorF:transcription factor activity;P:regulation of transcription;C:nucleus;POMFBAO.I.C.G.H.G.
56.799.837.1At1g03200839553unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
56.299.896.9At5g38710833862proline oxidase, putative / osmotic stress-responsive proline dehydrogenase, putativeF:proline dehydrogenase activity;P:proline catabolic process, glutamate biosynthetic process;C:unknown;BOMFPVAO.I.C.G.H.G.
55.999.8240.3At2g33310817894IAA13Auxin induced gene, IAA13 (IAA13).O.I.C.G.H.G.



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