Microarray experiments to specifically-expressed genes

GSM ID GSM142627
Assay name MC002_ATH1_A2.2-dubos-wtc
GSE experiment GSE6151: The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
291.2100.0232.0At3g62960825471glutaredoxin family proteinF:electron carrier activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:endomembrane system;PMFBOO.I.C.G.H.G.
252.3100.0103.5At4g16000827284unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
189.9100.0147.6At4g01390828075-F:molecular_function unknown;P:biological_process unknown;C:unknown;POO.I.C.G.H.G.
161.799.9305.5At5g65040836628senescence-associated protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
158.899.985.0At5g63580836477FLS2 (FLAVONOL SYNTHASE 2)encodes a protein whose sequence is similar to flavonol synthaseO.I.C.G.H.G.
150.099.992.3At1g21890838791nodulin MtN21 family proteinF:unknown;P:unknown;C:membrane;BPOAMO.I.C.G.H.G.
147.799.9104.7At3g28360822465PGP16 (P-GLYCOPROTEIN 16)F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:integral to membrane;BOMAFPVO.I.C.G.H.G.
144.199.925.7At5g19040832023IPT5Encodes cytokinin synthase.O.I.C.G.H.G.
143.099.9147.2At5g60450836166ARF4 (AUXIN RESPONSE FACTOR 4)Encodes a member of the ARF family of transcription factors which mediate auxin responses. ARF4 appears to have redundant function with ETT(ARF3) in specifying abaxial cell identity.O.I.C.G.H.G.
127.999.9117.4At5g11930831066glutaredoxin family proteinF:electron carrier activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:unknown;PMBOO.I.C.G.H.G.
127.999.935.2At5g06510830539NF-YA10 (NUCLEAR FACTOR Y, SUBUNIT A10)F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:CCAAT-binding factor complex, nucleus;PMFOO.I.C.G.H.G.
125.999.948.2At4g34560829608unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
124.299.977.7At4g01440826697nodulin MtN21 family proteinF:unknown;P:unknown;C:endomembrane system, membrane;BPOAMO.I.C.G.H.G.
122.999.957.2At5g23810832446AAP7Encodes nonfunctional amino acid transporter. AAP7 is the most distantly related member of the AAP family, a group of well characterized amino acid transporters within the ATF1 superfamily. Expression of this gene has not been detected with RNA gel blots or promoter GUS studies.O.I.C.G.H.G.
122.599.9125.4At1g34040840301alliinase family proteinF:pyridoxal phosphate binding, carbon-sulfur lyase activity, catalytic activity;P:biological_process unknown;C:endomembrane system;PBOAFO.I.C.G.H.G.
121.299.9290.3At1g12200837773flavin-containing monooxygenase family protein / FMO family proteinF:NADP or NADPH binding, monooxygenase activity, FAD binding, flavin-containing monooxygenase activity;P:biological_process unknown;C:cellular_component unknown;BOMFPAO.I.C.G.H.G.
121.099.9132.6At1g24575839072unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
120.599.9193.4At3g05690819738NF-YA2 (NUCLEAR FACTOR Y, SUBUNIT A2)Encodes a subunit of CCAAT-binding complex, binds to CCAAT box motif present in some plant promoter sequences. One of three members of this class (HAP2A, HAP2B, HAP2C), it is expressed in vegetative and reproductive tissues.O.I.C.G.H.G.
114.899.9164.1At3g59010825070pectinesterase family proteinF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFMOO.I.C.G.H.G.
113.499.963.5At1g78815844218LSH7 (LIGHT SENSITIVE HYPOCOTYLS 7)F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PMO.I.C.G.H.G.
100.499.9168.5At5g40960834098unknown proteinF:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;PO.I.C.G.H.G.
99.999.938.5At1g07300837241josephin protein-relatedF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
99.099.9147.1At4g10380826630NIP5Essential for efficient Boron uptake and plant development under boron limitation. Also functions in arsenite transport and tolerance.O.I.C.G.H.G.
96.799.9185.0At2g04795815023unknown proteinF:molecular_function unknown;P:response to oxidative stress;C:unknown;PO.I.C.G.H.G.
90.599.9135.7At1g62360842534STM (SHOOT MERISTEMLESS)Class I knotted-like homeodomain protein that is required for shoot apical meristem (SAM) formation during embryogenesis and for SAM function throughout the lifetime of the plant. Functions by preventing incorporation of cells in the meristem center into differentiating organ primordia.O.I.C.G.H.G.
89.599.926.6At3g27650822387LBD25 (LOB DOMAIN-CONTAINING PROTEIN 25)F:unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
85.799.9119.2At3g21250821679ATMRP6member of MRP subfamilyO.I.C.G.H.G.
80.399.940.2At4g20370827785TSF (TWIN SISTER OF FT)Encodes a floral inducer that is a homolog of FT. Plants overexpressing this gene flower earlier than Col. Loss-of-function mutations flower later in short days. TSF and FT play overlapping roles in the promotion of flowering, with FT playing the dominant role.TSF sequences show extensive variation in different accessions and may contribute to quantitative variation in flowering time in these accessions. TSF has a complex pattern of spatial expression; it is expressed mainly in phloem and expression is regulated by daylength and vernalization.O.I.C.G.H.G.
77.099.9200.2At1g22160838821senescence-associated protein-relatedF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
76.399.9180.7At2g18050816317HIS1-3 (HISTONE H1-3)encodes a structurally divergent linker histone whose gene expression is induced by dehydration and ABA.O.I.C.G.H.G.
74.899.928.1At4g38340829991RWP-RK domain-containing proteinF:transcription factor activity;P:regulation of transcription;C:unknown;POFBO.I.C.G.H.G.
74.299.996.7At1g01070839550nodulin MtN21 family proteinF:unknown;P:unknown;C:membrane;BPOAFMO.I.C.G.H.G.
73.899.966.0At1g73040843635jacalin lectin family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBMOO.I.C.G.H.G.
71.999.9103.0At2g45210819129auxin-responsive protein-relatedF:molecular_function unknown;P:response to auxin stimulus;C:unknown;POO.I.C.G.H.G.
71.999.970.5At3g63110825486ATIPT3 (ARABIDOPSIS THALIANA ISOPENTENYLTRANSFERASE 3)Encodes cytokinin synthase involved in cytokinin biosynthesis. IPT3 subcellular localization is modulated by farnesylation- when farnesylated it is localized to the nucleus, otherwise to the chloroplast.O.I.C.G.H.G.
70.499.9101.2At3g14280820648unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
69.799.9119.2At3g49360824098glucosamine/galactosamine-6-phosphate isomerase family proteinF:6-phosphogluconolactonase activity, catalytic activity;P:pentose-phosphate shunt, carbohydrate metabolic process;C:plasma membrane;BOFMPO.I.C.G.H.G.
69.599.9288.9At1g27030839592unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOPO.I.C.G.H.G.
65.099.826.6At1g69970843334CLE26 (CLAVATA3/ESR-RELATED 26)Member of a large family of putative ligands homologous to the Clavata3 gene. Consists of a single exon. Can not replace CLV3 function in vivo.O.I.C.G.H.G.
64.599.874.1At3g61880825361CYP78A9 (CYTOCHROME P450 78A9)Encodes a cytochrome p450 monooxygenase. Overexpression of this gene allows fruit growth independently of fertilization. The gene is normally expressed only in floral organs(during the Arabidopsis stage 14 flower) and in the funiculus at anthesis.O.I.C.G.H.G.
63.699.8206.8At2g35940818167BLH1 (BEL1-LIKE HOMEODOMAIN 1)Encodes a member of the BEL-like homeodomain protein family. Ecotopic expression in the embryo sac leads to defects in nuclear migration and cellularization and embryo sacs with multiple egg cells. Loss of function alleles have no female gametophyte defects. The ecotopic expression phenotype requires KNAT3 because it can be suppressed by loss of KNAT3 function alleles. Localized to the nucleus but interaction with OFP1 relocates it to the cytoplasm.O.I.C.G.H.G.
61.599.883.2At2g14210815907AGL44 (AGAMOUS-LIKE 44)MADS box gene, transcription factorO.I.C.G.H.G.
61.299.853.5At2g20550816577DNAJ chaperone C-terminal domain-containing proteinF:unfolded protein binding;P:protein folding;C:cellular_component unknown;BOMFPAVO.I.C.G.H.G.
61.199.898.1At2g04800815024unknown proteinF:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;PO.I.C.G.H.G.
58.999.8125.2At4g29100829031ethylene-responsive family proteinF:transcription factor activity;P:regulation of transcription;C:nucleus;OPMFO.I.C.G.H.G.
58.799.857.1At1g12940837852ATNRT2.5 (nitrate transporter2.5)member of High affinity nitrate transporter familyO.I.C.G.H.G.
58.599.845.4At4g22790828378MATE efflux family proteinF:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFMAO.I.C.G.H.G.
58.399.863.0At5g63710836491leucine-rich repeat transmembrane protein kinase, putativeF:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:cellular_component unknown;PMOBFVAO.I.C.G.H.G.
57.399.8173.6At4g12280826837copper amine oxidase family proteinF:amine oxidase activity, quinone binding, copper ion binding;P:cellular amine metabolic process;C:cellular_component unknown;FBMOPAO.I.C.G.H.G.
56.699.892.4At4g14465827093DNA-binding protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBMO.I.C.G.H.G.
54.999.8113.0At4g33040829441glutaredoxin family proteinF:electron carrier activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:cellular_component unknown;PMFOBO.I.C.G.H.G.
54.699.814.8At5g66630836795DAR5 (DA1-RELATED PROTEIN 5)F:zinc ion binding;P:unknown;C:unknown;PMOBFO.I.C.G.H.G.
54.099.869.6At5g66180836750-F:unknown;P:unknown;C:cellular_component unknown;BOMAFPO.I.C.G.H.G.
53.399.841.2At4g35240829677unknown proteinF:unknown;P:N-terminal protein myristoylation;C:plasma membrane;PMFOBVO.I.C.G.H.G.
52.899.894.3At4g09890826579unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
52.799.840.2At5g595308360722-oxoglutarate-dependent dioxygenase, putativeF:transferase activity, transferring glycosyl groups;P:unknown;C:unknown;POBFMO.I.C.G.H.G.
52.499.858.3At2g36970818271UDP-glucoronosyl/UDP-glucosyl transferase family proteinF:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:endomembrane system;PMBVOFO.I.C.G.H.G.
51.599.853.4At3g15510820790ATNAC2 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 2)Note of caution: not to be confused with another protein (AtNAC6 locus AT5G39610) which on occasion has also been referred to as AtNAC2.O.I.C.G.H.G.
51.599.841.4At3g11100820281transcription factorF:transcription factor activity;P:regulation of transcription;C:nucleus;POMFBAO.I.C.G.H.G.
50.599.875.8At1g10480837588ZFP5 (ZINC FINGER PROTEIN 5)Encodes a zinc finger protein containing only a single zinc finger.O.I.C.G.H.G.
49.999.825.2At1g70510843388KNAT2 (KNOTTED-LIKE FROM ARABIDOPSIS THALIANA 2)A member of class I knotted1-like homeobox gene family (together with KNAT1). Similar to the knotted1 (kn1) homeobox gene of maize. KNAT2 acts synergistically with cytokinins and antagonistically with ethylene based on ectopic expression studies in different mutant backgrounds and hormone treatments. In addition, KNAT2 is negatively regulated by AS and YABBY genes. KNAT2 is strongly expressed in the shoot apex of seedlings, while in mature plants the gene is primarily expressed in flowers and inflorescence stems.O.I.C.G.H.G.
49.899.867.2At5g18840832002sugar transporter, putativeF:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BMFPOAO.I.C.G.H.G.
49.799.8245.1At2g19810816500zinc finger (CCCH-type) family proteinF:transcription factor activity, nucleic acid binding;P:regulation of transcription;C:unknown;POMO.I.C.G.H.G.
49.199.820.8At1g48500841271JAZ4 (JASMONATE-ZIM-DOMAIN PROTEIN 4)F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.C.G.H.G.
48.999.856.0At4g13030826917unknown proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;BPMFOO.I.C.G.H.G.
48.599.814.5At3g43930823509-F:molecular_function unknown;P:biological_process unknown;C:intracellular;MFPOO.I.C.G.H.G.
48.499.849.1At1g17590838335NF-YA8 (NUCLEAR FACTOR Y, SUBUNIT A8)F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:CCAAT-binding factor complex, nucleus, chloroplast;PMFOBO.I.C.G.H.G.
46.499.8117.6At1g77920844127bZIP family transcription factorF:transcription factor activity, calmodulin binding;P:defense response to bacterium;C:nucleus;POFMBO.I.C.G.H.G.
44.499.861.1At2g33860817956ETT (ETTIN)ettin (ett) mutations have pleiotropic effects on Arabidopsis flower development, causing increases in perianth organ number, decreases in stamen number and anther formation, and apical-basal patterning defects in the gynoecium. The ETTIN gene encodes a protein with homology to DNA binding proteins which bind to auxin response elements. ETT transcript is expressed throughout stage 1 floral meristems and subsequently resolves to a complex pattern within petal, stamen and carpel primordia. ETT probably functions to impart regional identity in floral meristems that affects perianth organ number spacing, stamen formation, and regional differentiation in stamens and the gynoecium. During stage 5, ETT expression appears in a ring at the top of the floral meristem before morphological appearance of the gynoecium, consistent with the proposal that ETT is involved in prepatterning apical and basal boundaries in the gynoecium primordium. It is a target of the ta-siRNA tasiR-ARF.O.I.C.G.H.G.
44.199.8164.3At5g25770832646unknown proteinF:unknown;P:biological_process unknown;C:unknown;BOAFPO.I.C.G.H.G.
44.199.8102.4At2g29970817547heat shock protein-relatedF:unknown;P:unknown;C:cellular_component unknown;BOPFAMO.I.C.G.H.G.
43.399.842.0At4g00940827952Dof-type zinc finger domain-containing proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;POMO.I.C.G.H.G.
43.199.8162.8At5g49630835025AAP6 (AMINO ACID PERMEASE 6)Is a high affinity amino acid transporter capable of transporting aspartate and tryptophan. May be involved in the amino acid uptake from xylem.O.I.C.G.H.G.
42.399.820.8At4g25760828681AtGDU2 (Arabidopsis thaliana GLUTAMINE DUMPER 2)F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
41.599.827.0At3g04510819607LSH2 (LIGHT SENSITIVE HYPOCOTYLS 2)F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PMO.I.C.G.H.G.
41.399.838.4At5g06610830549unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO.I.C.G.H.G.
41.399.819.9At1g59670842257ATGSTU15 (GLUTATHIONE S-TRANSFERASE TAU 15)Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).O.I.C.G.H.G.
41.199.827.9At1g23380838946KNAT6homeodomain transcription factor KNAT6, belonging to class I of KN transcription factor family (which also includes KNAT1 and KNAT2). Expression is increased in as and bop1 leaf mutants.O.I.C.G.H.G.
40.899.892.1At5g49660835028leucine-rich repeat transmembrane protein kinase, putativeF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
40.899.867.0At2g12290815700-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
40.799.862.5At1g72630843595ELF4-L2 (ELF4-Like 2)F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.C.G.H.G.
40.699.879.8At1g72830843614NF-YA3 (NUCLEAR FACTOR Y, SUBUNIT A3)Encodes a subunit of CCAAT-binding complex, binds to CCAAT box motif present in some plant promoter sequences. One of three members of this class (HAP2A, HAP2B, HAP2C), it is expressed in vegetative and reproductive tissues.O.I.C.G.H.G.
40.699.838.7At5g28490832941LSH1 (LIGHT-DEPENDENT SHORT HYPOCOTYLS 1)Encodes a nuclear protein that mediates light regulation of seedling development in a phytochrome-dependent manner.O.I.C.G.H.G.
40.499.856.0At4g14580827106CIPK4 (CBL-interacting protein kinase 4)CBL-interacting protein kinaseO.I.C.G.H.G.
39.699.850.3At4g29820829104CFIM-25Encodes a homolog of the protein CFI-25, a polyadenylation factor subunit.O.I.C.G.H.G.
39.599.833.2At3g13810820593AtIDD11 (Arabidopsis thaliana Indeterminate(ID)-Domain 11)F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;MOPFBO.I.C.G.H.G.
39.299.8299.9At1g78020844137senescence-associated protein-relatedF:unknown;P:unknown;C:unknown;PO.I.C.G.H.G.
39.299.833.9At3g21600821714senescence/dehydration-associated protein-relatedF:molecular_function unknown;P:biological_process unknown;C:unknown;PMFO.I.C.G.H.G.
39.299.819.5At5g35450833508disease resistance protein (CC-NBS-LRR class), putativeF:ATP binding;P:defense response, apoptosis;C:plasma membrane;PBMOFAO.I.C.G.H.G.
39.099.812.6At2g04038814936AtbZIP48 (Arabidopsis thaliana basic leucine-zipper 48)F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMOFO.I.C.G.H.G.
38.599.858.5At1g75810843914unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
38.299.859.3At3g14610820689CYP72A7putative cytochrome P450O.I.C.G.H.G.
38.099.8147.4At5g45890834629SAG12 (SENESCENCE-ASSOCIATED GENE 12)Senescence-associated gene 12 (SAG12) encoding a cysteine protease influenced by cytokinin, auxin, and sugars.Localized to special vacuole found during senescence called senescence associated vacuoles which are different from central vacuole in the tonoplast composition and pH.O.I.C.G.H.G.
37.999.844.2At4g17880827511basic helix-loop-helix (bHLH) family proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFOVBO.I.C.G.H.G.
37.699.766.9At5g64550836576loricrin-relatedF:molecular_function unknown;P:unknown;C:unknown;MPOBFVO.I.C.G.H.G.
36.799.7227.2At2g17710816280unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
35.999.720.6At5g66350836767SHI (SHORT INTERNODES)A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis. Shi mutant is dominant, has dwarf phenotype. Loss of function mutations have no observable phenotype. Putative zinc finger protein. Involved in the response to gibberellic acid.O.I.C.G.H.G.
35.599.7177.6At4g29080829029PAP2 (PHYTOCHROME-ASSOCIATED PROTEIN 2)phytochrome-associated protein 2 (PAP2)O.I.C.G.H.G.
35.399.7337.9At1g67870843115glycine-rich proteinF:unknown;P:biological_process unknown;C:unknown;MOBPFAVO.I.C.G.H.G.
35.399.786.1At4g17670827487senescence-associated protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.



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