CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM142625

Assay name MC002_ATH1_A1.3-dubos-wtx

GSE experiment GSE6151: The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
818.8 100.0 119.5 At1g19630 838550 CYP722A1 member of CYP722A O.I. C.G. H.G.
511.2 100.0 101.7 At2g44745 819083 WRKY family transcription factor F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus;PO O.I. C.G. H.G.
392.7 100.0 170.8 At3g28360 822465 PGP16 (P-GLYCOPROTEIN 16) F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:integral to membrane;BOMAFPV O.I. C.G. H.G.
387.9 100.0 90.3 At5g64530 836574 XND1 F:transcription factor activity;P:multicellular organismal development, shoot development, xylem histogenesis, programmed cell death;C:cellular_component unknown;P O.I. C.G. H.G.
387.2 100.0 148.2 At1g21890 838791 nodulin MtN21 family protein F:unknown;P:unknown;C:membrane;BPOAM O.I. C.G. H.G.
382.3 100.0 86.9 At2g44990 819107 CCD7 (CAROTENOID CLEAVAGE DIOXYGENASE 7) More Axillary Branching; carotenoid cleavage dioxygenases. O.I. C.G. H.G.
360.0 100.0 103.2 At2g45450 819153 ZPR1 (LITTLE ZIPPER 1) ZPR1, a small leucine zipper-containing protein that interacts with REV HD-ZIPIII and is involved in the establishment of leaf polarity. O.I. C.G. H.G.
346.2 100.0 193.1 At5g11930 831066 glutaredoxin family protein F:electron carrier activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:unknown;PMBO O.I. C.G. H.G.
334.2 100.0 130.6 At1g12320 837786 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
313.5 100.0 62.5 At3g28345 822463 ABC transporter family protein F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:plasma membrane;BOMAFPV O.I. C.G. H.G.
303.3 100.0 185.8 At3g46130 823756 MYB111 (MYB DOMAIN PROTEIN 111) Encodes a putative transcription factor (MYB48) that functions to regulate flavonol biosynthesis primarily in cotyledons. O.I. C.G. H.G.
299.6 100.0 103.2 At5g16080 831465 AtCXE17 (Arabidopsis thaliana carboxyesterase 17) F:hydrolase activity;P:metabolic process;C:cellular_component unknown;BMOPFAV O.I. C.G. H.G.
294.9 100.0 235.7 At1g49320 841355 BURP domain-containing protein F:molecular_function unknown;P:unknown;C:endomembrane system;P O.I. C.G. H.G.
284.4 100.0 100.4 At3g10120 820175 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
249.5 100.0 79.4 At4g25434 828648 ATNUDT10 (Arabidopsis thaliana Nudix hydrolase homolog 10) F:ADP-ribose diphosphatase activity, NAD or NADH binding, catalytic activity;P:metabolic process;C:unknown;BOMPAF O.I. C.G. H.G.
246.0 100.0 150.0 At2g22680 816799 zinc finger (C3HC4-type RING finger) family protein F:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:unknown;C:unknown;PBOMFA O.I. C.G. H.G.
245.2 100.0 34.4 At1g17950 838374 MYB52 (MYB DOMAIN PROTEIN 52) putative transcription factor: R2R3-MYB transcription family O.I. C.G. H.G.
236.9 100.0 49.0 At4g33450 829482 MYB69 (MYB DOMAIN PROTEIN 69) Member of the R2R3 factor gene family. O.I. C.G. H.G.
214.3 100.0 94.0 At4g10310 826623 HKT1 (HIGH-AFFINITY K+ TRANSPORTER 1) encodes a sodium transporter (HKT1) expressed in xylem parenchyma cells. Mutants over-accumulate sodium in shoot tissue and have increased sodium in the xylem sap and reduced sodium in phloem sap and roots. O.I. C.G. H.G.
213.7 100.0 173.0 At2g18560 816371 UDP-glucoronosyl/UDP-glucosyl transferase family protein F:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBOVF O.I. C.G. H.G.
212.7 100.0 59.2 At4g37970 829953 CAD6 (CINNAMYL ALCOHOL DEHYDROGENASE 6) F:oxidoreductase activity, binding, catalytic activity, zinc ion binding;P:oxidation reduction, metabolic process;C:cellular_component unknown;BOPFMAV O.I. C.G. H.G.
212.6 100.0 231.6 At1g20160 838606 ATSBT5.2 F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:apoplast;BPOFMA O.I. C.G. H.G.
199.7 100.0 187.5 At4g30460 829169 glycine-rich protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MBOPFVA O.I. C.G. H.G.
198.0 100.0 89.8 At4g00940 827952 Dof-type zinc finger domain-containing protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;POM O.I. C.G. H.G.
190.9 100.0 156.6 At1g34040 840301 alliinase family protein F:pyridoxal phosphate binding, carbon-sulfur lyase activity, catalytic activity;P:biological_process unknown;C:endomembrane system;PBOAF O.I. C.G. H.G.
184.7 100.0 326.5 At5g65040 836628 senescence-associated protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
180.9 100.0 47.3 At3g29670 822645 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFO O.I. C.G. H.G.
180.7 100.0 65.3 At2g37900 818366 proton-dependent oligopeptide transport (POT) family protein F:transporter activity;P:oligopeptide transport;C:membrane;BPMOF O.I. C.G. H.G.
174.8 100.0 48.3 At1g02070 839270 unknown protein F:unknown;P:unknown;C:cellular_component unknown;P O.I. C.G. H.G.
171.1 100.0 88.6 At1g76800 844014 nodulin, putative F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOPFA O.I. C.G. H.G.
169.0 100.0 86.9 At4g28530 828971 anac074 (Arabidopsis NAC domain containing protein 74) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P O.I. C.G. H.G.
166.2 100.0 210.3 At4g29100 829031 ethylene-responsive family protein F:transcription factor activity;P:regulation of transcription;C:nucleus;OPMF O.I. C.G. H.G.
162.7 99.9 233.0 At1g25530 839139 lysine and histidine specific transporter, putative F:amino acid transmembrane transporter activity;P:amino acid transport;C:membrane;PMFOBA O.I. C.G. H.G.
159.7 99.9 68.9 At5g56460 835747 protein kinase, putative F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:plasma membrane;MPOBFVA O.I. C.G. H.G.
157.7 99.9 53.6 At2g40200 818611 basic helix-loop-helix (bHLH) family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMOFB O.I. C.G. H.G.
156.5 99.9 162.3 At4g09890 826579 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
156.4 99.9 282.0 At2g33770 817943 PHO2 (PHOSPHATE 2) Encodes a ubiquitin-conjugating E2 enzyme. UBC24 mRNA accumulation is suppressed by miR399f, miR399b and miR399c. Involved in phosphate starvation response. O.I. C.G. H.G.
155.6 99.9 50.7 At1g33440 840237 proton-dependent oligopeptide transport (POT) family protein F:transporter activity;P:oligopeptide transport;C:plasma membrane, membrane;BPMOF O.I. C.G. H.G.
155.3 99.9 139.9 At1g01070 839550 nodulin MtN21 family protein F:unknown;P:unknown;C:membrane;BPOAFM O.I. C.G. H.G.
141.4 99.9 181.4 At4g33040 829441 glutaredoxin family protein F:electron carrier activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:cellular_component unknown;PMFOB O.I. C.G. H.G.
139.4 99.9 61.2 At5g59050 836022 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM O.I. C.G. H.G.
138.1 99.9 250.0 At1g52150 841645 ATHB-15 Member of the class III HD-ZIP protein family. Contains homeodomain and leucine zipper domain. Critical for vascular development and negatively regulates vascular cell differentiation. O.I. C.G. H.G.
137.9 99.9 220.9 At2g04795 815023 unknown protein F:molecular_function unknown;P:response to oxidative stress;C:unknown;P O.I. C.G. H.G.
134.7 99.9 128.0 At3g50350 824197 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
132.7 99.9 30.4 At2g17260 816231 GLR2 (GLUTAMATE RECEPTOR 2) Encodes a glutamate receptor. Involved in calcium-programmed stomatal closure. O.I. C.G. H.G.
130.1 99.9 44.3 At5g28650 832971 WRKY74 member of WRKY Transcription Factor; Group II-d O.I. C.G. H.G.
127.2 99.9 81.0 At4g17880 827511 basic helix-loop-helix (bHLH) family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFOVB O.I. C.G. H.G.
120.5 99.9 74.1 At5g63580 836477 FLS2 (FLAVONOL SYNTHASE 2) encodes a protein whose sequence is similar to flavonol synthase O.I. C.G. H.G.
120.0 99.9 91.1 At3g63110 825486 ATIPT3 (ARABIDOPSIS THALIANA ISOPENTENYLTRANSFERASE 3) Encodes cytokinin synthase involved in cytokinin biosynthesis. IPT3 subcellular localization is modulated by farnesylation- when farnesylated it is localized to the nucleus, otherwise to the chloroplast. O.I. C.G. H.G.
119.6 99.9 249.6 At1g22160 838821 senescence-associated protein-related F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
116.7 99.9 64.4 At1g78815 844218 LSH7 (LIGHT SENSITIVE HYPOCOTYLS 7) F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PM O.I. C.G. H.G.
116.3 99.9 153.8 At1g62360 842534 STM (SHOOT MERISTEMLESS) Class I knotted-like homeodomain protein that is required for shoot apical meristem (SAM) formation during embryogenesis and for SAM function throughout the lifetime of the plant. Functions by preventing incorporation of cells in the meristem center into differentiating organ primordia. O.I. C.G. H.G.
112.4 99.9 173.2 At5g16570 831519 GLN1 Encodes a cytosolic glutamine synthetase, the enzyme has high affinity with substrate ammonium O.I. C.G. H.G.
112.0 99.9 49.2 At3g56620 824829 integral membrane family protein / nodulin MtN21-related F:unknown;P:unknown;C:membrane;BPOAM O.I. C.G. H.G.
111.9 99.9 186.3 At3g05690 819738 NF-YA2 (NUCLEAR FACTOR Y, SUBUNIT A2) Encodes a subunit of CCAAT-binding complex, binds to CCAAT box motif present in some plant promoter sequences. One of three members of this class (HAP2A, HAP2B, HAP2C), it is expressed in vegetative and reproductive tissues. O.I. C.G. H.G.
110.4 99.9 66.2 At4g19370 827678 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
109.4 99.9 128.5 At4g14465 827093 DNA-binding protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBM O.I. C.G. H.G.
108.0 99.9 62.1 At3g50650 824228 scarecrow-like transcription factor 7 (SCL7) F:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;PMFOBV O.I. C.G. H.G.
106.8 99.9 159.8 At4g01430 826685 nodulin MtN21 family protein F:unknown;P:unknown;C:endomembrane system, membrane;PBOAMF O.I. C.G. H.G.
104.5 99.9 157.6 At2g29970 817547 heat shock protein-related F:unknown;P:unknown;C:cellular_component unknown;BOPFAM O.I. C.G. H.G.
104.3 99.9 79.5 At3g05650 819732 AtRLP32 (Receptor Like Protein 32) F:protein binding, kinase activity;P:signal transduction, defense response;C:endomembrane system;PMOBFAV O.I. C.G. H.G.
104.0 99.9 33.0 At4g36060 829762 basic helix-loop-helix (bHLH) family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus, chloroplast, cytoplasm;PMOBF O.I. C.G. H.G.
102.6 99.9 124.8 At5g60450 836166 ARF4 (AUXIN RESPONSE FACTOR 4) Encodes a member of the ARF family of transcription factors which mediate auxin responses. ARF4 appears to have redundant function with ETT(ARF3) in specifying abaxial cell identity. O.I. C.G. H.G.
102.4 99.9 113.4 At3g01860 820070 unknown protein F:molecular_function unknown;P:response to cadmium ion;C:chloroplast;PM O.I. C.G. H.G.
101.6 99.9 45.7 At3g54430 824609 SRS6 (SHI-RELATED SEQUENCE 6) A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis. O.I. C.G. H.G.
99.9 99.9 40.6 At1g13600 837921 AtbZIP58 (Arabidopsis thaliana basic leucine-zipper 58) F:transcription factor activity, protein heterodimerization activity, protein homodimerization activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;POMFB O.I. C.G. H.G.
99.8 99.9 20.8 At3g43930 823509 - F:molecular_function unknown;P:biological_process unknown;C:intracellular;MFPO O.I. C.G. H.G.
97.3 99.9 152.0 At5g43180 834336 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PBO O.I. C.G. H.G.
96.7 99.9 101.7 At4g08300 826384 nodulin MtN21 family protein F:unknown;P:unknown;C:membrane;BPOAMF O.I. C.G. H.G.
95.8 99.9 99.4 At4g31730 829301 GDU1 (GLUTAMINE DUMPER 1) Glutamine dumper1 is a putative transmembrane protein. It is involved in glutamine secretion O.I. C.G. H.G.
95.1 99.9 80.9 At3g48185 823974 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
94.8 99.9 140.5 At1g49470 841370 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PM O.I. C.G. H.G.
93.0 99.9 124.7 At5g38710 833862 proline oxidase, putative / osmotic stress-responsive proline dehydrogenase, putative F:proline dehydrogenase activity;P:proline catabolic process, glutamate biosynthetic process;C:unknown;BOMFPVA O.I. C.G. H.G.
92.1 99.9 238.1 At5g49630 835025 AAP6 (AMINO ACID PERMEASE 6) Is a high affinity amino acid transporter capable of transporting aspartate and tryptophan. May be involved in the amino acid uptake from xylem. O.I. C.G. H.G.
92.1 99.9 45.3 At4g25420 828645 GA20OX1 Encodes gibberellin 20-oxidase that is involved in the later steps of the gibberellin biosynthetic pathway. Regulated by a circadian clock. Weak expression response to far red light. O.I. C.G. H.G.
91.4 99.9 55.4 At4g39720 830127 VQ motif-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPMF O.I. C.G. H.G.
90.9 99.9 66.5 At1g22030 838808 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM O.I. C.G. H.G.
90.3 99.9 58.6 At1g11700 837714 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO O.I. C.G. H.G.
87.5 99.9 174.0 At4g09760 826564 choline kinase, putative encodes a choline synthase whose gene expression is induced by high salt and mannitol. O.I. C.G. H.G.
84.2 99.9 64.7 At1g17590 838335 NF-YA8 (NUCLEAR FACTOR Y, SUBUNIT A8) F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:CCAAT-binding factor complex, nucleus, chloroplast;PMFOB O.I. C.G. H.G.
84.0 99.9 73.6 At3g50810 824245 unknown protein F:molecular_function unknown;P:biological_process unknown;C:membrane;P O.I. C.G. H.G.
83.8 99.9 105.8 At5g09460 830805 transcription factor/ transcription regulator F:transcription factor activity, transcription regulator activity;P:regulation of transcription;C:nucleus;POMF O.I. C.G. H.G.
83.7 99.9 52.8 At3g11100 820281 transcription factor F:transcription factor activity;P:regulation of transcription;C:nucleus;POMFBA O.I. C.G. H.G.
83.6 99.9 153.8 At5g40960 834098 unknown protein F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;P O.I. C.G. H.G.
82.1 99.9 125.6 At4g24120 828512 YSL1 (YELLOW STRIPE LIKE 1) Member of a small family of oligopeptide transporters similar to the yellow stripe locus of maize (ZmYS1). O.I. C.G. H.G.
81.5 99.9 145.1 At5g25890 832658 IAA28 (INDOLE-3-ACETIC ACID INDUCIBLE 28) encodes a protein that may be a negative regulator of lateral root formation in response to auxin. It is a member of IAA/ARF gene family and is plant-specific. Gain of function mutations in this gene suppresses lateral root formation and is resistant to inhibition of root elongation by auxin, cytokinin, and ethylene. O.I. C.G. H.G.
81.5 99.9 106.4 At5g19875 832109 unknown protein F:molecular_function unknown;P:response to oxidative stress;C:endomembrane system;P O.I. C.G. H.G.
79.8 99.9 266.3 At4g29080 829029 PAP2 (PHYTOCHROME-ASSOCIATED PROTEIN 2) phytochrome-associated protein 2 (PAP2) O.I. C.G. H.G.
78.6 99.9 40.0 At1g17230 838294 ATP binding / protein binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase F:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
77.8 99.9 76.3 At1g30760 839958 FAD-binding domain-containing protein F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;BFPOAM O.I. C.G. H.G.
77.7 99.9 48.7 At1g43650 840949 integral membrane family protein / nodulin MtN21-related F:unknown;P:unknown;C:endomembrane system, membrane;OBPAM O.I. C.G. H.G.
77.4 99.9 103.1 At1g61660 842462 basic helix-loop-helix (bHLH) family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMOBF O.I. C.G. H.G.
76.0 99.9 134.1 At4g18120 827537 AML3 (ARABIDOPSIS MEI2-LIKE 3) A member of mei2-like gene family, predominantly plant-based family of genes encoding RNA binding proteins with characteristic presence of a highly conserved RNA binding motif first described in the mei2 gene of the fission yeast S. pombe. In silico analyses reveal nine mei2 -like genes in A. thaliana. They were grouped into four distinct clades, based on overall sequence similarity and subfamily-specific sequence elements. AML3 is a member of two sister clades of mei2-like gene family, AML1 through AML5, and belongs to the clade named ALM235. Among mei2-like genes, AML3 is the transcript with highest frequency of alternative splicing. Expression was detected during early embryo development (heart and torpedo stage); no accumulation was detected in vegetative and floral apices, as revealed by in situ hybridization. O.I. C.G. H.G.
75.8 99.9 92.5 At4g30520 829175 leucine-rich repeat family protein / protein kinase family protein F:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA O.I. C.G. H.G.
74.8 99.9 258.2 At1g18880 838469 proton-dependent oligopeptide transport (POT) family protein F:transporter activity;P:oligopeptide transport;C:membrane;PMBFO O.I. C.G. H.G.
74.7 99.9 35.9 At3g51480 824311 ATGLR3.6 (GLUTAMATE RECEPTOR 3.6) member of Putative ligand-gated ion channel subunit family O.I. C.G. H.G.
74.1 99.9 42.4 At1g03200 839553 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
73.8 99.9 26.7 At5g35450 833508 disease resistance protein (CC-NBS-LRR class), putative F:ATP binding;P:defense response, apoptosis;C:plasma membrane;PBMOFA O.I. C.G. H.G.
73.7 99.9 30.1 At4g39410 830096 WRKY13 member of WRKY Transcription Factor; Group II-c O.I. C.G. H.G.
73.2 99.9 275.1 At2g33310 817894 IAA13 Auxin induced gene, IAA13 (IAA13). O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
818.8	100.0	119.5	At1g19630	838550	CYP722A1	member of CYP722A	O.I.	C.G.	H.G.
511.2	100.0	101.7	At2g44745	819083	WRKY family transcription factor	F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus;PO	O.I.	C.G.	H.G.
392.7	100.0	170.8	At3g28360	822465	PGP16 (P-GLYCOPROTEIN 16)	F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:integral to membrane;BOMAFPV	O.I.	C.G.	H.G.
387.9	100.0	90.3	At5g64530	836574	XND1	F:transcription factor activity;P:multicellular organismal development, shoot development, xylem histogenesis, programmed cell death;C:cellular_component unknown;P	O.I.	C.G.	H.G.
387.2	100.0	148.2	At1g21890	838791	nodulin MtN21 family protein	F:unknown;P:unknown;C:membrane;BPOAM	O.I.	C.G.	H.G.
382.3	100.0	86.9	At2g44990	819107	CCD7 (CAROTENOID CLEAVAGE DIOXYGENASE 7)	More Axillary Branching; carotenoid cleavage dioxygenases.	O.I.	C.G.	H.G.
360.0	100.0	103.2	At2g45450	819153	ZPR1 (LITTLE ZIPPER 1)	ZPR1, a small leucine zipper-containing protein that interacts with REV HD-ZIPIII and is involved in the establishment of leaf polarity.	O.I.	C.G.	H.G.
346.2	100.0	193.1	At5g11930	831066	glutaredoxin family protein	F:electron carrier activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:unknown;PMBO	O.I.	C.G.	H.G.
334.2	100.0	130.6	At1g12320	837786	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
313.5	100.0	62.5	At3g28345	822463	ABC transporter family protein	F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:plasma membrane;BOMAFPV	O.I.	C.G.	H.G.
303.3	100.0	185.8	At3g46130	823756	MYB111 (MYB DOMAIN PROTEIN 111)	Encodes a putative transcription factor (MYB48) that functions to regulate flavonol biosynthesis primarily in cotyledons.	O.I.	C.G.	H.G.
299.6	100.0	103.2	At5g16080	831465	AtCXE17 (Arabidopsis thaliana carboxyesterase 17)	F:hydrolase activity;P:metabolic process;C:cellular_component unknown;BMOPFAV	O.I.	C.G.	H.G.
294.9	100.0	235.7	At1g49320	841355	BURP domain-containing protein	F:molecular_function unknown;P:unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
284.4	100.0	100.4	At3g10120	820175	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
249.5	100.0	79.4	At4g25434	828648	ATNUDT10 (Arabidopsis thaliana Nudix hydrolase homolog 10)	F:ADP-ribose diphosphatase activity, NAD or NADH binding, catalytic activity;P:metabolic process;C:unknown;BOMPAF	O.I.	C.G.	H.G.
246.0	100.0	150.0	At2g22680	816799	zinc finger (C3HC4-type RING finger) family protein	F:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:unknown;C:unknown;PBOMFA	O.I.	C.G.	H.G.
245.2	100.0	34.4	At1g17950	838374	MYB52 (MYB DOMAIN PROTEIN 52)	putative transcription factor: R2R3-MYB transcription family	O.I.	C.G.	H.G.
236.9	100.0	49.0	At4g33450	829482	MYB69 (MYB DOMAIN PROTEIN 69)	Member of the R2R3 factor gene family.	O.I.	C.G.	H.G.
214.3	100.0	94.0	At4g10310	826623	HKT1 (HIGH-AFFINITY K+ TRANSPORTER 1)	encodes a sodium transporter (HKT1) expressed in xylem parenchyma cells. Mutants over-accumulate sodium in shoot tissue and have increased sodium in the xylem sap and reduced sodium in phloem sap and roots.	O.I.	C.G.	H.G.
213.7	100.0	173.0	At2g18560	816371	UDP-glucoronosyl/UDP-glucosyl transferase family protein	F:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBOVF	O.I.	C.G.	H.G.
212.7	100.0	59.2	At4g37970	829953	CAD6 (CINNAMYL ALCOHOL DEHYDROGENASE 6)	F:oxidoreductase activity, binding, catalytic activity, zinc ion binding;P:oxidation reduction, metabolic process;C:cellular_component unknown;BOPFMAV	O.I.	C.G.	H.G.
212.6	100.0	231.6	At1g20160	838606	ATSBT5.2	F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:apoplast;BPOFMA	O.I.	C.G.	H.G.
199.7	100.0	187.5	At4g30460	829169	glycine-rich protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MBOPFVA	O.I.	C.G.	H.G.
198.0	100.0	89.8	At4g00940	827952	Dof-type zinc finger domain-containing protein	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;POM	O.I.	C.G.	H.G.
190.9	100.0	156.6	At1g34040	840301	alliinase family protein	F:pyridoxal phosphate binding, carbon-sulfur lyase activity, catalytic activity;P:biological_process unknown;C:endomembrane system;PBOAF	O.I.	C.G.	H.G.
184.7	100.0	326.5	At5g65040	836628	senescence-associated protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
180.9	100.0	47.3	At3g29670	822645	transferase family protein	F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFO	O.I.	C.G.	H.G.
180.7	100.0	65.3	At2g37900	818366	proton-dependent oligopeptide transport (POT) family protein	F:transporter activity;P:oligopeptide transport;C:membrane;BPMOF	O.I.	C.G.	H.G.
174.8	100.0	48.3	At1g02070	839270	unknown protein	F:unknown;P:unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
171.1	100.0	88.6	At1g76800	844014	nodulin, putative	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOPFA	O.I.	C.G.	H.G.
169.0	100.0	86.9	At4g28530	828971	anac074 (Arabidopsis NAC domain containing protein 74)	F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P	O.I.	C.G.	H.G.
166.2	100.0	210.3	At4g29100	829031	ethylene-responsive family protein	F:transcription factor activity;P:regulation of transcription;C:nucleus;OPMF	O.I.	C.G.	H.G.
162.7	99.9	233.0	At1g25530	839139	lysine and histidine specific transporter, putative	F:amino acid transmembrane transporter activity;P:amino acid transport;C:membrane;PMFOBA	O.I.	C.G.	H.G.
159.7	99.9	68.9	At5g56460	835747	protein kinase, putative	F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:plasma membrane;MPOBFVA	O.I.	C.G.	H.G.
157.7	99.9	53.6	At2g40200	818611	basic helix-loop-helix (bHLH) family protein	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMOFB	O.I.	C.G.	H.G.
156.5	99.9	162.3	At4g09890	826579	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
156.4	99.9	282.0	At2g33770	817943	PHO2 (PHOSPHATE 2)	Encodes a ubiquitin-conjugating E2 enzyme. UBC24 mRNA accumulation is suppressed by miR399f, miR399b and miR399c. Involved in phosphate starvation response.	O.I.	C.G.	H.G.
155.6	99.9	50.7	At1g33440	840237	proton-dependent oligopeptide transport (POT) family protein	F:transporter activity;P:oligopeptide transport;C:plasma membrane, membrane;BPMOF	O.I.	C.G.	H.G.
155.3	99.9	139.9	At1g01070	839550	nodulin MtN21 family protein	F:unknown;P:unknown;C:membrane;BPOAFM	O.I.	C.G.	H.G.
141.4	99.9	181.4	At4g33040	829441	glutaredoxin family protein	F:electron carrier activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:cellular_component unknown;PMFOB	O.I.	C.G.	H.G.
139.4	99.9	61.2	At5g59050	836022	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM	O.I.	C.G.	H.G.
138.1	99.9	250.0	At1g52150	841645	ATHB-15	Member of the class III HD-ZIP protein family. Contains homeodomain and leucine zipper domain. Critical for vascular development and negatively regulates vascular cell differentiation.	O.I.	C.G.	H.G.
137.9	99.9	220.9	At2g04795	815023	unknown protein	F:molecular_function unknown;P:response to oxidative stress;C:unknown;P	O.I.	C.G.	H.G.
134.7	99.9	128.0	At3g50350	824197	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
132.7	99.9	30.4	At2g17260	816231	GLR2 (GLUTAMATE RECEPTOR 2)	Encodes a glutamate receptor. Involved in calcium-programmed stomatal closure.	O.I.	C.G.	H.G.
130.1	99.9	44.3	At5g28650	832971	WRKY74	member of WRKY Transcription Factor; Group II-d	O.I.	C.G.	H.G.
127.2	99.9	81.0	At4g17880	827511	basic helix-loop-helix (bHLH) family protein	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFOVB	O.I.	C.G.	H.G.
120.5	99.9	74.1	At5g63580	836477	FLS2 (FLAVONOL SYNTHASE 2)	encodes a protein whose sequence is similar to flavonol synthase	O.I.	C.G.	H.G.
120.0	99.9	91.1	At3g63110	825486	ATIPT3 (ARABIDOPSIS THALIANA ISOPENTENYLTRANSFERASE 3)	Encodes cytokinin synthase involved in cytokinin biosynthesis. IPT3 subcellular localization is modulated by farnesylation- when farnesylated it is localized to the nucleus, otherwise to the chloroplast.	O.I.	C.G.	H.G.
119.6	99.9	249.6	At1g22160	838821	senescence-associated protein-related	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
116.7	99.9	64.4	At1g78815	844218	LSH7 (LIGHT SENSITIVE HYPOCOTYLS 7)	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PM	O.I.	C.G.	H.G.
116.3	99.9	153.8	At1g62360	842534	STM (SHOOT MERISTEMLESS)	Class I knotted-like homeodomain protein that is required for shoot apical meristem (SAM) formation during embryogenesis and for SAM function throughout the lifetime of the plant. Functions by preventing incorporation of cells in the meristem center into differentiating organ primordia.	O.I.	C.G.	H.G.
112.4	99.9	173.2	At5g16570	831519	GLN1	Encodes a cytosolic glutamine synthetase, the enzyme has high affinity with substrate ammonium	O.I.	C.G.	H.G.
112.0	99.9	49.2	At3g56620	824829	integral membrane family protein / nodulin MtN21-related	F:unknown;P:unknown;C:membrane;BPOAM	O.I.	C.G.	H.G.
111.9	99.9	186.3	At3g05690	819738	NF-YA2 (NUCLEAR FACTOR Y, SUBUNIT A2)	Encodes a subunit of CCAAT-binding complex, binds to CCAAT box motif present in some plant promoter sequences. One of three members of this class (HAP2A, HAP2B, HAP2C), it is expressed in vegetative and reproductive tissues.	O.I.	C.G.	H.G.
110.4	99.9	66.2	At4g19370	827678	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
109.4	99.9	128.5	At4g14465	827093	DNA-binding protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBM	O.I.	C.G.	H.G.
108.0	99.9	62.1	At3g50650	824228	scarecrow-like transcription factor 7 (SCL7)	F:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;PMFOBV	O.I.	C.G.	H.G.
106.8	99.9	159.8	At4g01430	826685	nodulin MtN21 family protein	F:unknown;P:unknown;C:endomembrane system, membrane;PBOAMF	O.I.	C.G.	H.G.
104.5	99.9	157.6	At2g29970	817547	heat shock protein-related	F:unknown;P:unknown;C:cellular_component unknown;BOPFAM	O.I.	C.G.	H.G.
104.3	99.9	79.5	At3g05650	819732	AtRLP32 (Receptor Like Protein 32)	F:protein binding, kinase activity;P:signal transduction, defense response;C:endomembrane system;PMOBFAV	O.I.	C.G.	H.G.
104.0	99.9	33.0	At4g36060	829762	basic helix-loop-helix (bHLH) family protein	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus, chloroplast, cytoplasm;PMOBF	O.I.	C.G.	H.G.
102.6	99.9	124.8	At5g60450	836166	ARF4 (AUXIN RESPONSE FACTOR 4)	Encodes a member of the ARF family of transcription factors which mediate auxin responses. ARF4 appears to have redundant function with ETT(ARF3) in specifying abaxial cell identity.	O.I.	C.G.	H.G.
102.4	99.9	113.4	At3g01860	820070	unknown protein	F:molecular_function unknown;P:response to cadmium ion;C:chloroplast;PM	O.I.	C.G.	H.G.
101.6	99.9	45.7	At3g54430	824609	SRS6 (SHI-RELATED SEQUENCE 6)	A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis.	O.I.	C.G.	H.G.
99.9	99.9	40.6	At1g13600	837921	AtbZIP58 (Arabidopsis thaliana basic leucine-zipper 58)	F:transcription factor activity, protein heterodimerization activity, protein homodimerization activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;POMFB	O.I.	C.G.	H.G.
99.8	99.9	20.8	At3g43930	823509	-	F:molecular_function unknown;P:biological_process unknown;C:intracellular;MFPO	O.I.	C.G.	H.G.
97.3	99.9	152.0	At5g43180	834336	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PBO	O.I.	C.G.	H.G.
96.7	99.9	101.7	At4g08300	826384	nodulin MtN21 family protein	F:unknown;P:unknown;C:membrane;BPOAMF	O.I.	C.G.	H.G.
95.8	99.9	99.4	At4g31730	829301	GDU1 (GLUTAMINE DUMPER 1)	Glutamine dumper1 is a putative transmembrane protein. It is involved in glutamine secretion	O.I.	C.G.	H.G.
95.1	99.9	80.9	At3g48185	823974	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
94.8	99.9	140.5	At1g49470	841370	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PM	O.I.	C.G.	H.G.
93.0	99.9	124.7	At5g38710	833862	proline oxidase, putative / osmotic stress-responsive proline dehydrogenase, putative	F:proline dehydrogenase activity;P:proline catabolic process, glutamate biosynthetic process;C:unknown;BOMFPVA	O.I.	C.G.	H.G.
92.1	99.9	238.1	At5g49630	835025	AAP6 (AMINO ACID PERMEASE 6)	Is a high affinity amino acid transporter capable of transporting aspartate and tryptophan. May be involved in the amino acid uptake from xylem.	O.I.	C.G.	H.G.
92.1	99.9	45.3	At4g25420	828645	GA20OX1	Encodes gibberellin 20-oxidase that is involved in the later steps of the gibberellin biosynthetic pathway. Regulated by a circadian clock. Weak expression response to far red light.	O.I.	C.G.	H.G.
91.4	99.9	55.4	At4g39720	830127	VQ motif-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPMF	O.I.	C.G.	H.G.
90.9	99.9	66.5	At1g22030	838808	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM	O.I.	C.G.	H.G.
90.3	99.9	58.6	At1g11700	837714	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO	O.I.	C.G.	H.G.
87.5	99.9	174.0	At4g09760	826564	choline kinase, putative	encodes a choline synthase whose gene expression is induced by high salt and mannitol.	O.I.	C.G.	H.G.
84.2	99.9	64.7	At1g17590	838335	NF-YA8 (NUCLEAR FACTOR Y, SUBUNIT A8)	F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:CCAAT-binding factor complex, nucleus, chloroplast;PMFOB	O.I.	C.G.	H.G.
84.0	99.9	73.6	At3g50810	824245	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:membrane;P	O.I.	C.G.	H.G.
83.8	99.9	105.8	At5g09460	830805	transcription factor/ transcription regulator	F:transcription factor activity, transcription regulator activity;P:regulation of transcription;C:nucleus;POMF	O.I.	C.G.	H.G.
83.7	99.9	52.8	At3g11100	820281	transcription factor	F:transcription factor activity;P:regulation of transcription;C:nucleus;POMFBA	O.I.	C.G.	H.G.
83.6	99.9	153.8	At5g40960	834098	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;P	O.I.	C.G.	H.G.
82.1	99.9	125.6	At4g24120	828512	YSL1 (YELLOW STRIPE LIKE 1)	Member of a small family of oligopeptide transporters similar to the yellow stripe locus of maize (ZmYS1).	O.I.	C.G.	H.G.
81.5	99.9	145.1	At5g25890	832658	IAA28 (INDOLE-3-ACETIC ACID INDUCIBLE 28)	encodes a protein that may be a negative regulator of lateral root formation in response to auxin. It is a member of IAA/ARF gene family and is plant-specific. Gain of function mutations in this gene suppresses lateral root formation and is resistant to inhibition of root elongation by auxin, cytokinin, and ethylene.	O.I.	C.G.	H.G.
81.5	99.9	106.4	At5g19875	832109	unknown protein	F:molecular_function unknown;P:response to oxidative stress;C:endomembrane system;P	O.I.	C.G.	H.G.
79.8	99.9	266.3	At4g29080	829029	PAP2 (PHYTOCHROME-ASSOCIATED PROTEIN 2)	phytochrome-associated protein 2 (PAP2)	O.I.	C.G.	H.G.
78.6	99.9	40.0	At1g17230	838294	ATP binding / protein binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase	F:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
77.8	99.9	76.3	At1g30760	839958	FAD-binding domain-containing protein	F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;BFPOAM	O.I.	C.G.	H.G.
77.7	99.9	48.7	At1g43650	840949	integral membrane family protein / nodulin MtN21-related	F:unknown;P:unknown;C:endomembrane system, membrane;OBPAM	O.I.	C.G.	H.G.
77.4	99.9	103.1	At1g61660	842462	basic helix-loop-helix (bHLH) family protein	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMOBF	O.I.	C.G.	H.G.
76.0	99.9	134.1	At4g18120	827537	AML3 (ARABIDOPSIS MEI2-LIKE 3)	A member of mei2-like gene family, predominantly plant-based family of genes encoding RNA binding proteins with characteristic presence of a highly conserved RNA binding motif first described in the mei2 gene of the fission yeast S. pombe. In silico analyses reveal nine mei2 -like genes in A. thaliana. They were grouped into four distinct clades, based on overall sequence similarity and subfamily-specific sequence elements. AML3 is a member of two sister clades of mei2-like gene family, AML1 through AML5, and belongs to the clade named ALM235. Among mei2-like genes, AML3 is the transcript with highest frequency of alternative splicing. Expression was detected during early embryo development (heart and torpedo stage); no accumulation was detected in vegetative and floral apices, as revealed by in situ hybridization.	O.I.	C.G.	H.G.
75.8	99.9	92.5	At4g30520	829175	leucine-rich repeat family protein / protein kinase family protein	F:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA	O.I.	C.G.	H.G.
74.8	99.9	258.2	At1g18880	838469	proton-dependent oligopeptide transport (POT) family protein	F:transporter activity;P:oligopeptide transport;C:membrane;PMBFO	O.I.	C.G.	H.G.
74.7	99.9	35.9	At3g51480	824311	ATGLR3.6 (GLUTAMATE RECEPTOR 3.6)	member of Putative ligand-gated ion channel subunit family	O.I.	C.G.	H.G.
74.1	99.9	42.4	At1g03200	839553	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
73.8	99.9	26.7	At5g35450	833508	disease resistance protein (CC-NBS-LRR class), putative	F:ATP binding;P:defense response, apoptosis;C:plasma membrane;PBMOFA	O.I.	C.G.	H.G.
73.7	99.9	30.1	At4g39410	830096	WRKY13	member of WRKY Transcription Factor; Group II-c	O.I.	C.G.	H.G.
73.2	99.9	275.1	At2g33310	817894	IAA13	Auxin induced gene, IAA13 (IAA13).	O.I.	C.G.	H.G.

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GSM ID	GSM142625
Assay name	MC002_ATH1_A1.3-dubos-wtx
GSE experiment	GSE6151: The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis

Microarray experiments to specifically-expressed genes

GSM ID GSM142625 Assay name MC002_ATH1_A1.3-dubos-wtx GSE experiment GSE6151: The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis

GSM ID GSM142625

Assay name MC002_ATH1_A1.3-dubos-wtx

GSE experiment GSE6151: The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis