Microarray experiments to specifically-expressed genes

GSM ID GSM142593
Assay name DB001_ATH1_A3-Brown-cal
GSE experiment GSE6148: The trans-differentiation of cultured Arabidopsis cells

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
572.5100.051.9At2g23060816836GCN5-related N-acetyltransferase (GNAT) family proteinF:N-acetyltransferase activity;P:metabolic process;C:cellular_component unknown;PAOBMO.I.C.G.H.G.
458.1100.0225.9At2g47520819365AP2 domain-containing transcription factor, putativeencodes a member of the ERF (ethylene response factor) subfamily B-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 5 members in this subfamily including RAP2.2 AND RAP2.12.O.I.C.G.H.G.
303.9100.072.3At5g56970835799CKX3 (CYTOKININ OXIDASE 3)It encodes a protein whose sequence is similar to cytokinin oxidase/dehydrogenase, which catalyzes the degradation of cytokinins.O.I.C.G.H.G.
276.1100.0290.3At3g29970822700germination protein-relatedF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
154.999.916.8At4g13190826933ATP binding / kinase/ protein kinase/ protein serine/threonine kinaseF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVAO.I.C.G.H.G.
139.699.9144.0At5g10040830868unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
137.699.9137.2At4g33560829495unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
130.899.967.7At1g31320840020LBD4 (LOB DOMAIN-CONTAINING PROTEIN 4)F:unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
126.399.982.9At3g19200821454unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
114.899.9214.9At3g25900822186HMT-1F:homocysteine S-methyltransferase activity;P:methionine biosynthetic process;C:cellular_component unknown;BOMPFAO.I.C.G.H.G.
113.699.9283.7At1g43800840977acyl-(acyl-carrier-protein) desaturase, putative / stearoyl-ACP desaturase, putativeF:acyl-[acyl-carrier-protein] desaturase activity, oxidoreductase activity, transition metal ion binding;P:fatty acid metabolic process, fatty acid biosynthetic process;C:membrane;PBOMO.I.C.G.H.G.
108.399.928.1At3g07150819901unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
100.499.9298.6At1g33055840201unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
99.499.9159.6At2g17850816295-F:molecular_function unknown;P:aging;C:endomembrane system;BOPAMFO.I.C.G.H.G.
97.799.9324.6At3g43190823393SUS4Encodes a protein with sucrose synthase activity (SUS4).O.I.C.G.H.G.
93.099.9483.9At3g46230823768ATHSP17.4member of the class I small heat-shock protein (sHSP) family, which accounts for the majority of sHSPs in maturing seedsO.I.C.G.H.G.
86.899.935.4At5g62180836339AtCXE20 (Arabidopsis thaliana carboxyesterase 20)F:carboxylesterase activity;P:metabolic process;C:cellular_component unknown;BOPFMAVO.I.C.G.H.G.
82.799.9125.7At3g48100823965ARR5 (ARABIDOPSIS RESPONSE REGULATOR 5)Encodes a transcription repressor that mediates a negative feedback loop in cytokinin signalling. ARR5 expression is upregulated by Class I KNOX genes. Arr5 protein is stabilized by cytokinin in a two-component phosphorelay.O.I.C.G.H.G.
81.199.965.9At2g34900818055IMB1 (IMBIBITION-INDUCIBLE 1)Encodes a member of the BET subgroup of bromodomain proteins, a novel class of putative transcription factors. Its expression is induced during seed imbibition and downregulated during germination. Seeds of a loss-of-function mutant allele, imb1, show impaired cotyledon greening during germination in abscisic acid (ABA) and express higher levels of ABI5 protein than the wild type. Moreover, imb1 seeds are deficient in the phytochrome A (phyA)-mediated very-low-fluence response of germination.O.I.C.G.H.G.
76.299.96.1At5g26870832745AGL26Root SpecificO.I.C.G.H.G.
73.799.9159.9At4g27670828881HSP21 (HEAT SHOCK PROTEIN 21)chloroplast located small heat shock protein.O.I.C.G.H.G.
72.899.9366.8At5g12030831076AT-HSP17.6A (ARABIDOPSIS THALIANA HEAT SHOCK PROTEIN 17.6A)Encodes a cytosolic small heat shock protein with chaperone activity that is induced by heat and osmotic stress and is also expressed late in seed development.O.I.C.G.H.G.
70.999.981.7At1g72800843611nuM1-relatedF:nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;PBFMOAVO.I.C.G.H.G.
66.299.8137.2At5g62520836372SRO5 (SIMILAR TO RCD ONE 5)Encodes a protein with similarity to RCD1 but without the WWE domain. The protein does have a PARP signature upstream of the C-terminal protein interaction domain. The PARP signature may bind NAD+ and attach the ADP-ribose-moiety from NAD+ to the target molecule. Its presence suggests a role for the protein in ADP ribosylation. Up-regulated by NaCl. SRO5 and P5CDH (an overlapping gene in the antisense orientation) generate 24-nt and 21-nt siRNAs, which together are components of a regulatory loop controlling reactive oxygen species (ROS) production and stress response.O.I.C.G.H.G.
64.399.829.8At1g55610842010BRL1 (BRI 1 LIKE)mutant has Altered vascular cell differentiation; LRR Receptor KinaseO.I.C.G.H.G.
63.999.819.7At2g40530818648unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
63.199.887.4At5g11160830985APT5 (Adenine phosphoribosyltransferase 5)F:adenine phosphoribosyltransferase activity;P:nucleoside metabolic process, adenine salvage, anaerobic respiration, nucleotide metabolic process;C:cellular_component unknown;BOAMFPO.I.C.G.H.G.
63.099.8157.1At1g80670844406transducin family protein / WD-40 repeat family proteinThis gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays, and may be involved in the formation of a CUL4-based E3 ubiquitin ligaseO.I.C.G.H.G.
62.499.8216.6At5g12020831075HSP17.6II (17.6 KDA CLASS II HEAT SHOCK PROTEIN)F:unknown;P:response to heat;C:cellular_component unknown;BPOFAMO.I.C.G.H.G.
60.799.833.0At1g16530838223ASL9 (ASYMMETRIC LEAVES 2 LIKE 9)F:unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
60.299.8247.8At1g5405084184317.4 kDa class III heat shock protein (HSP17.4-CIII)F:molecular_function unknown;P:response to high light intensity, response to hydrogen peroxide, response to heat;C:unknown;BPOFAMO.I.C.G.H.G.
59.599.879.9At4g24110828511unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO.I.C.G.H.G.
54.899.824.0At5g53950835478CUC2 (CUP-SHAPED COTYLEDON 2)Transcriptional activator of the NAC gene family, with CUC1 redundantly required for embryonic apical meristem formation, cotyledon separation and expression of STM. Proper timing of CUC2 expression is required to maintain the phyllotactic pattern initiated in the meristem. CUC2 expression in leaf sinus region is required for serration and the extent of serration is modulated by mir164A mediated repression of CUC2.O.I.C.G.H.G.
54.199.899.6At5g44730834502haloacid dehalogenase-like hydrolase family proteinF:hydrolase activity, phosphoglycolate phosphatase activity, catalytic activity;P:metabolic process;C:endomembrane system;BMAOFPO.I.C.G.H.G.
51.699.847.8At1g36060840510AP2 domain-containing transcription factor, putativeencodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 8 members in this subfamily including RAP2.4.O.I.C.G.H.G.
50.699.868.6At2g28450817393zinc finger (CCCH-type) family proteinF:methyltransferase activity, zinc ion binding, RNA methyltransferase activity, nucleic acid binding;P:acetate biosynthetic process from carbon monoxide, methanol oxidation, RNA processing;C:cellular_component unknown;BOMFAPVO.I.C.G.H.G.
49.899.880.8At5g05640830447nucleoprotein-relatedF:molecular_function unknown;P:biological_process unknown;C:membrane;VPO.I.C.G.H.G.
49.099.828.9At1g20270838615oxidoreductase, 2OG-Fe(II) oxygenase family proteinF:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity, iron ion binding;P:protein metabolic process, peptidyl-proline hydroxylation to 4-hydroxy-L-proline;C:unknown;MOPBFVO.I.C.G.H.G.
47.499.8401.5At2g36460818220fructose-bisphosphate aldolase, putativeF:fructose-bisphosphate aldolase activity, catalytic activity;P:response to cadmium ion, response to salt stress, pentose-phosphate shunt;C:mitochondrion, plasma membrane, membrane;OMBPFO.I.C.G.H.G.
46.999.853.1At3g23150821891ETR2 (ethylene response 2)Involved in ethylene perception in ArabidopsisO.I.C.G.H.G.
46.199.8149.5At3g44720823601ADT4 (arogenate dehydratase 4)Encodes a plastid-localized arogenate dehydratase involved in phenylalanine biosynthesis. Not less than six genes encoding ADT were identified in the Arabidopsis genome: ADT1 [At1g11790]; ADT2 [At3g07630]; ADT3 [At2g27820]; ADT4 [At3g44720]; ADT5 [At5g22630]; and ADT6 [At1g08250].O.I.C.G.H.G.
46.099.8310.7At3g03270821303universal stress protein (USP) family protein / early nodulin ENOD18 family proteinF:unknown;P:response to stress;C:plasma membrane, membrane;PFMBOO.I.C.G.H.G.
45.999.8101.0At3g45770823720oxidoreductase, zinc-binding dehydrogenase family proteinF:zinc ion binding, ATP binding;P:oxidation reduction, metabolic process;C:mitochondrion, chloroplast, nucleus;BOFMPAO.I.C.G.H.G.
44.299.8173.5At4g25200828623ATHSP23.6-MITO (MITOCHONDRION-LOCALIZED SMALL HEAT SHOCK PROTEIN 23.6)AtHSP23.6-mito mRNA, nuclear gene encoding mitochondrialO.I.C.G.H.G.
44.099.858.3At3g27220822341kelch repeat-containing proteinF:unknown;P:biological_process unknown;C:Golgi apparatus;MBOVPFAO.I.C.G.H.G.
43.499.833.1At4g11660826771AT-HSFB2Bmember of Heat Stress Transcription Factor (Hsf) familyO.I.C.G.H.G.
43.399.842.1At2g41780818777unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
42.999.892.7At2g47260819339WRKY23member of WRKY Transcription Factor; Group IO.I.C.G.H.G.
42.699.840.4At1g77150844052-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
42.399.834.9At3g62100825383IAA30 (INDOLE-3-ACETIC ACID INDUCIBLE 30)Encodes a member of the Aux/IAA family of proteins implicated in auxin signaling. IAA30 lacks the conserved degron (domain II) found in many family members. IAA30 transcripts are induced by auxin treatment and accumulate preferentially in the quiescent center cells of the root meristem. Overexpression of IAA30 leads to defects in gravitropism, root development, root meristem maintenance, and cotyledon vascular development.O.I.C.G.H.G.
41.799.8248.2At1g5354084178917.6 kDa class I small heat shock protein (HSP17.6C-CI) (AA 1-156)F:unknown;P:response to heat;C:cellular_component unknown;BPOFAMO.I.C.G.H.G.
41.699.8188.1At5g59720836093HSP18.2 (heat shock protein 18.2)encodes a low molecular weight heat shock protein that contains the heat shock element in the promoter region. Expression is induced in response to heat shock.O.I.C.G.H.G.
41.399.8129.4At1g5256084168726.5 kDa class I small heat shock protein-like (HSP26.5-P)F:molecular_function unknown;P:response to high light intensity, response to hydrogen peroxide, response to heat;C:mitochondrion;BPOFAMVO.I.C.G.H.G.
39.599.855.1At4g22780828377ACR7Member of a family of ACT domain containing proteins . ACT domains are involved in amino acid binding .O.I.C.G.H.G.
38.399.8160.1At5g66985836833unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
37.899.8262.1At1g0740083725217.8 kDa class I heat shock protein (HSP17.8-CI)F:unknown;P:response to oxidative stress, response to heat;C:unknown;BPOFAMO.I.C.G.H.G.
36.699.7222.6At1g16030838174Hsp70b (heat shock protein 70B)F:ATP binding;P:protein folding, response to heat;C:cytosol, cell wall, plasma membrane, chloroplast, membrane;BOMFPVAO.I.C.G.H.G.
36.299.7120.4At5g47060834752senescence-associated protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO.I.C.G.H.G.
35.599.7189.8At4g10270826619wound-responsive family proteinF:molecular_function unknown;P:response to wounding;C:unknown;PO.I.C.G.H.G.
34.799.789.8At4g03320827972tic20-IV (TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 20-IV)F:unknown;P:unknown;C:unknown;PBO.I.C.G.H.G.
34.799.727.2At4g37295829884unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
34.399.791.9At3g30720822807QQS (QUA-QUINE STARCH)F:molecular_function unknown;P:starch biosynthetic process;C:cytosol;PO.I.C.G.H.G.
33.199.759.7At4g01120826505GBF2 (G-BOX BINDING FACTOR 2)bZIP (basic leucine zipper) transcription factor that binds to the G-box regulatory element found in many plant promoters. GBF2 nuclear localization is increased by blue lightO.I.C.G.H.G.
32.699.7106.5At1g65370842848meprin and TRAF homology domain-containing protein / MATH domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.C.G.H.G.
31.999.735.0At3g47600823914ATMYB94 (MYB DOMAIN PROTEIN 94)Encodes a putative transcription factor (MYB94).O.I.C.G.H.G.
31.799.736.4At3g24450822035copper-binding family proteinF:copper ion binding, metal ion binding;P:copper ion transport, metal ion transport;C:endomembrane system;POMO.I.C.G.H.G.
30.999.7217.2At4g31290829256ChaC-like family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOMFPO.I.C.G.H.G.
30.999.759.0At5g47830834834unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.C.G.H.G.
30.099.7112.4At5g39890833986unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOO.I.C.G.H.G.
30.099.775.6At5g46840834728RNA recognition motif (RRM)-containing proteinF:RNA binding, nucleotide binding, nucleic acid binding;P:unknown;C:unknown;MOFPBVAO.I.C.G.H.G.
29.899.7342.7At2g26400817180ATARD3 (ACIREDUCTONE DIOXYGENASE 3)Encodes a protein predicted to belong to the acireductone dioxygenase (ARD/ARDí)family.O.I.C.G.H.G.
29.799.762.2At2g39705818554RTFL8 (ROTUNDIFOLIA LIKE 8)F:molecular_function unknown;P:shoot development;C:chloroplast;PO.I.C.G.H.G.
29.699.740.2At5g10510830915AIL6 (AINTEGUMENTA-LIKE 6)Encodes an AP2-domain transcription factor involved in root stem cell identity and root development.O.I.C.G.H.G.
29.599.727.9At1g72660843598developmentally regulated GTP-binding protein, putativeF:GTP binding;P:unknown;C:intracellular;BOMAFPO.I.C.G.H.G.
29.499.772.9At5g64680836589unknown proteinF:molecular_function unknown;P:biological_process unknown;C:nucleolus;MOPFO.I.C.G.H.G.
29.499.748.8At3g54850824650PUB14Encodes a protein with ubiquitin ligase activity.O.I.C.G.H.G.
29.399.781.3At1g06080837117ADS1 (DELTA 9 DESATURASE 1)homologous to delta 9 acyl-lipid desaturases of cyanobacteria and acyl-CoA desaturases of yeast and mammals. expression down-regulated by cold temperature.O.I.C.G.H.G.
28.999.742.4At3g61850825358DAG1 (dof affecting germination 1)Zinc finger transcription factor of the Dof family involved in the control of seed germination.O.I.C.G.H.G.
28.999.735.8At5g24280832495-F:unknown;P:unknown;C:unknown;PMOBFO.I.C.G.H.G.
28.699.734.0At1g59660842256nucleoporin family proteinF:transporter activity;P:transport;C:chloroplast, nuclear pore;MBOFPVAO.I.C.G.H.G.
27.899.739.4At2g47680819381zinc finger (CCCH type) helicase family proteinF:helicase activity, zinc ion binding, nucleic acid binding, ATP binding;P:nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;C:chloroplast;MBOFPVO.I.C.G.H.G.
27.599.7428.5At4g27450828854unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cytosol, nucleus, plasma membrane;PBOMFO.I.C.G.H.G.
27.399.7106.1At1g13380837898unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
27.299.7122.4At3g53230824489cell division cycle protein 48, putative / CDC48, putativeF:hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding;P:response to cadmium ion;C:cytosol, nucleolus, plasma membrane;BOMFPAVO.I.C.G.H.G.
27.099.7222.1At2g23170816849GH3.3encodes an IAA-amido synthase that conjugates Asp and other amino acids to auxin in vitro.O.I.C.G.H.G.
26.999.7222.1At4g39675830122unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
26.799.733.8At1g23280838937MAK16 protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVAO.I.C.G.H.G.
26.299.715.1At2g03830814909unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
26.199.714.7At4g32890829425zinc finger (GATA type) family proteinF:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus;PFOMO.I.C.G.H.G.
25.999.7192.0At5g37740833752C2 domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;MPFOO.I.C.G.H.G.
25.899.758.7At1g68360843165zinc finger protein-relatedF:transcription factor activity;P:regulation of transcription;C:intracellular;PMOO.I.C.G.H.G.
25.699.7262.4At5g52640835341ATHSP90.1 (HEAT SHOCK PROTEIN 90.1)Encodes a cytosolic heat shock protein AtHSP90.1. AtHSP90.1 interacts with disease resistance signaling components SGT1b and RAR1 and is required for RPS2-mediated resistance.O.I.C.G.H.G.
25.599.736.0At3g22980821872elongation factor Tu family proteinF:translation factor activity, nucleic acid binding, GTP binding, GTPase activity;P:biological_process unknown;C:cellular_component unknown;BOMFAPO.I.C.G.H.G.
25.299.653.9At4g14560827103IAA1 (INDOLE-3-ACETIC ACID INDUCIBLE)auxin (indole-3-acetic acid) induced gene (IAA1) encoding a short-lived nuclear-localized transcriptional regulator protein.O.I.C.G.H.G.
24.999.6109.1At3g16050820850A37Encodes a protein with pyridoxal phosphate synthase activity whose transcripts were detected mostly in roots and accumulate during senescence. The protein was found in very low abundance, which prevented a specific localisation.O.I.C.G.H.G.
24.999.623.6At5g48650834922nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing proteinF:RNA binding, nucleotide binding, nucleic acid binding;P:transport, nucleocytoplasmic transport;C:endomembrane system, intracellular;MPFOBAO.I.C.G.H.G.
24.399.6134.2At3g02790820985zinc finger (C2H2 type) family proteinF:transcription factor activity;P:regulation of transcription;C:intracellular;POO.I.C.G.H.G.
23.999.631.2At5g12330831108LRP1 (LATERAL ROOT PRIMORDIUM 1)A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis. Expressed in lateral root primordia and induced by auxin. SWP1 is involved in the repression of LRP1 via histone deacetylation.O.I.C.G.H.G.
23.799.639.3At2g41070818706EEL (ENHANCED EM LEVEL)Transcription factor homologous to ABI5. Regulates AtEm1 expression by binding directly at the AtEm1 promoter. Located in the nucleus and expressed during seed maturation in the cotyledons and later in the whole embryo.O.I.C.G.H.G.
23.699.645.0At5g46410834684NLI interacting factor (NIF) family proteinF:phosphatase activity;P:biological_process unknown;C:cellular_component unknown;MOFPBVO.I.C.G.H.G.



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