CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM139897

Assay name WT_non-polysome_rep2

GSE experiment GSE6024: eif3h/WT polysome loading

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
19.5 99.6 151.2 At4g38840 830039 auxin-responsive protein, putative F:molecular_function unknown;P:response to auxin stimulus, response to cold;C:plasma membrane;PO O.I. C.G. H.G.
19.1 99.6 230.5 At4g33030 829440 SQD1 involved in sulfolipid biosynthesis O.I. C.G. H.G.
15.7 99.5 54.2 At1g70900 843429 unknown protein F:molecular_function unknown;P:unknown;C:unknown;P O.I. C.G. H.G.
15.2 99.4 270.4 At2g14910 815980 unknown protein F:unknown;P:unknown;C:chloroplast;BOPM O.I. C.G. H.G.
14.5 99.4 21.7 At2g04790 815022 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PO O.I. C.G. H.G.
13.0 99.4 410.0 At3g16770 820929 ATEBP (ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN) Encodes a member of the ERF (ethylene response factor) subfamily B-2 of the plant specific ERF/AP2 transcription factor family (RAP2.3). The protein contains one AP2 domain. There are 5 members in this subfamily including RAP2.2 AND RAP2.12.It is localized to the nucleus and acts as a transcriptional activator through the GCC-box. It has been identified as a suppressor of Bax-induced cell death by functional screening in yeast and can also suppress Bax-induced cell death in tobacco plants. Overexpression of this gene in tobacco BY-2 cells confers resistance to H2O2 and heat stresses. Overexpression in Arabidopsis causes upregulation of PDF1.2 and GST6. It is part of the ethylene signaling pathway and is predicted to act downstream of EIN2 and CTR1, but not under EIN3. O.I. C.G. H.G.
12.8 99.3 1028.1 At3g16640 820916 TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN) Encodes a protein homologous to translationally controlled tumor protein (TCTP) from Drosophila. In flies, TCTP functions guanine nucleotide exchange factor in the TOR signaling pathway. TCTP is expressed throughout the plant with highest levels seen in meristematic regions of the shoot and root. Loss of function alleles are not transmitted through the male gametophyte due to defects in pollen tube growth. Hypomorphs, generated through RNAi, are dwarf and have smaller cells. These plants also have defects in lateral and primary root growth as well as root hair growth. The phenotypes are similar to TOR mutants suggesting that TCTP functions in the is pathway in Arabidopsis as well. O.I. C.G. H.G.
12.0 99.3 110.2 At5g47435 834791 formyltetrahydrofolate deformylase, putative encodes one of the two putative formyltetrahydrofolate deformylase. Located in the mitochondrion. Involved in photorespiratory tetrahydrofolate cycle. O.I. C.G. H.G.
11.4 99.3 53.0 At4g12970 826909 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
11.3 99.3 625.7 At3g12120 820387 FAD2 (FATTY ACID DESATURASE 2) Major enzyme responsible for the synthesis of 18:2 fatty acids in the endoplasmic reticulum. Contains His-rich motifs, which contribute to the interaction with the electron donor cytochrome b5. O.I. C.G. H.G.
11.3 99.3 445.9 At5g41700 834173 UBC8 (UBIQUITIN CONJUGATING ENZYME 8) One of the polypeptides that constitute the ubiquitin-conjugating enzyme E2 O.I. C.G. H.G.
11.2 99.2 102.5 At1g68490 843178 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
11.1 99.2 91.2 At2g21210 816658 auxin-responsive protein, putative Putative auxin-regulated protein whose expression is downregulated in response to chitin oligomers. O.I. C.G. H.G.
11.1 99.2 59.7 At3g18215 821349 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO O.I. C.G. H.G.
10.6 99.2 1185.5 At3g54890 824654 LHCA1 Encodes a component of the light harvesting complex associated with photosystem I. O.I. C.G. H.G.
10.3 99.2 90.5 At2g46490 819258 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM O.I. C.G. H.G.
10.2 99.2 49.8 At2g45950 819203 ASK20 (ARABIDOPSIS SKP1-LIKE 20) F:ubiquitin-protein ligase activity, protein binding;P:ubiquitin-dependent protein catabolic process;C:SCF ubiquitin ligase complex;MPOFBV O.I. C.G. H.G.
10.2 99.2 28.1 At3g44430 823568 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P O.I. C.G. H.G.
9.8 99.1 73.8 At2g15580 816051 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFBV O.I. C.G. H.G.
9.5 99.1 611.3 At1g23310 838940 GGT1 (GLUTAMATE:GLYOXYLATE AMINOTRANSFERASE) Identified by cloning the gene that corresponded to a purified protein having glyoxylate aminotransferase activity. Localized to the peroxisome and thought to be involved in photorespiration/ metabolic salvage pathway. O.I. C.G. H.G.
9.5 99.1 81.3 At5g24800 832549 BZIP9 (BASIC LEUCINE ZIPPER 9) Encodes bZIP protein BZO2H2. O.I. C.G. H.G.
9.4 99.1 68.4 At3g47295 823883 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
9.3 99.1 1158.8 At4g10340 826626 LHCB5 (LIGHT HARVESTING COMPLEX OF PHOTOSYSTEM II 5) photosystem II encoding the light-harvesting chlorophyll a/b binding protein CP26 of the antenna system of the photosynthetic apparatus O.I. C.G. H.G.
9.0 99.1 39.1 At3g21870 821742 CYCP2 F:cyclin-dependent protein kinase activity;P:regulation of cell cycle;C:unknown;FOMPB O.I. C.G. H.G.
8.8 99.0 641.6 At4g34620 829614 SSR16 (SMALL SUBUNIT RIBOSOMAL PROTEIN 16) Encodes ribosomal protein S16, has embryo-defective lethal mutant phenotype O.I. C.G. H.G.
8.8 99.0 39.1 At4g17486 827462 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOF O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
19.5	99.6	151.2	At4g38840	830039	auxin-responsive protein, putative	F:molecular_function unknown;P:response to auxin stimulus, response to cold;C:plasma membrane;PO	O.I.	C.G.	H.G.
19.1	99.6	230.5	At4g33030	829440	SQD1	involved in sulfolipid biosynthesis	O.I.	C.G.	H.G.
15.7	99.5	54.2	At1g70900	843429	unknown protein	F:molecular_function unknown;P:unknown;C:unknown;P	O.I.	C.G.	H.G.
15.2	99.4	270.4	At2g14910	815980	unknown protein	F:unknown;P:unknown;C:chloroplast;BOPM	O.I.	C.G.	H.G.
14.5	99.4	21.7	At2g04790	815022	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;PO	O.I.	C.G.	H.G.
13.0	99.4	410.0	At3g16770	820929	ATEBP (ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN)	Encodes a member of the ERF (ethylene response factor) subfamily B-2 of the plant specific ERF/AP2 transcription factor family (RAP2.3). The protein contains one AP2 domain. There are 5 members in this subfamily including RAP2.2 AND RAP2.12.It is localized to the nucleus and acts as a transcriptional activator through the GCC-box. It has been identified as a suppressor of Bax-induced cell death by functional screening in yeast and can also suppress Bax-induced cell death in tobacco plants. Overexpression of this gene in tobacco BY-2 cells confers resistance to H2O2 and heat stresses. Overexpression in Arabidopsis causes upregulation of PDF1.2 and GST6. It is part of the ethylene signaling pathway and is predicted to act downstream of EIN2 and CTR1, but not under EIN3.	O.I.	C.G.	H.G.
12.8	99.3	1028.1	At3g16640	820916	TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN)	Encodes a protein homologous to translationally controlled tumor protein (TCTP) from Drosophila. In flies, TCTP functions guanine nucleotide exchange factor in the TOR signaling pathway. TCTP is expressed throughout the plant with highest levels seen in meristematic regions of the shoot and root. Loss of function alleles are not transmitted through the male gametophyte due to defects in pollen tube growth. Hypomorphs, generated through RNAi, are dwarf and have smaller cells. These plants also have defects in lateral and primary root growth as well as root hair growth. The phenotypes are similar to TOR mutants suggesting that TCTP functions in the is pathway in Arabidopsis as well.	O.I.	C.G.	H.G.
12.0	99.3	110.2	At5g47435	834791	formyltetrahydrofolate deformylase, putative	encodes one of the two putative formyltetrahydrofolate deformylase. Located in the mitochondrion. Involved in photorespiratory tetrahydrofolate cycle.	O.I.	C.G.	H.G.
11.4	99.3	53.0	At4g12970	826909	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
11.3	99.3	625.7	At3g12120	820387	FAD2 (FATTY ACID DESATURASE 2)	Major enzyme responsible for the synthesis of 18:2 fatty acids in the endoplasmic reticulum. Contains His-rich motifs, which contribute to the interaction with the electron donor cytochrome b5.	O.I.	C.G.	H.G.
11.3	99.3	445.9	At5g41700	834173	UBC8 (UBIQUITIN CONJUGATING ENZYME 8)	One of the polypeptides that constitute the ubiquitin-conjugating enzyme E2	O.I.	C.G.	H.G.
11.2	99.2	102.5	At1g68490	843178	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
11.1	99.2	91.2	At2g21210	816658	auxin-responsive protein, putative	Putative auxin-regulated protein whose expression is downregulated in response to chitin oligomers.	O.I.	C.G.	H.G.
11.1	99.2	59.7	At3g18215	821349	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO	O.I.	C.G.	H.G.
10.6	99.2	1185.5	At3g54890	824654	LHCA1	Encodes a component of the light harvesting complex associated with photosystem I.	O.I.	C.G.	H.G.
10.3	99.2	90.5	At2g46490	819258	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM	O.I.	C.G.	H.G.
10.2	99.2	49.8	At2g45950	819203	ASK20 (ARABIDOPSIS SKP1-LIKE 20)	F:ubiquitin-protein ligase activity, protein binding;P:ubiquitin-dependent protein catabolic process;C:SCF ubiquitin ligase complex;MPOFBV	O.I.	C.G.	H.G.
10.2	99.2	28.1	At3g44430	823568	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P	O.I.	C.G.	H.G.
9.8	99.1	73.8	At2g15580	816051	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFBV	O.I.	C.G.	H.G.
9.5	99.1	611.3	At1g23310	838940	GGT1 (GLUTAMATE:GLYOXYLATE AMINOTRANSFERASE)	Identified by cloning the gene that corresponded to a purified protein having glyoxylate aminotransferase activity. Localized to the peroxisome and thought to be involved in photorespiration/ metabolic salvage pathway.	O.I.	C.G.	H.G.
9.5	99.1	81.3	At5g24800	832549	BZIP9 (BASIC LEUCINE ZIPPER 9)	Encodes bZIP protein BZO2H2.	O.I.	C.G.	H.G.
9.4	99.1	68.4	At3g47295	823883	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
9.3	99.1	1158.8	At4g10340	826626	LHCB5 (LIGHT HARVESTING COMPLEX OF PHOTOSYSTEM II 5)	photosystem II encoding the light-harvesting chlorophyll a/b binding protein CP26 of the antenna system of the photosynthetic apparatus	O.I.	C.G.	H.G.
9.0	99.1	39.1	At3g21870	821742	CYCP2	F:cyclin-dependent protein kinase activity;P:regulation of cell cycle;C:unknown;FOMPB	O.I.	C.G.	H.G.
8.8	99.0	641.6	At4g34620	829614	SSR16 (SMALL SUBUNIT RIBOSOMAL PROTEIN 16)	Encodes ribosomal protein S16, has embryo-defective lethal mutant phenotype	O.I.	C.G.	H.G.
8.8	99.0	39.1	At4g17486	827462	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOF	O.I.	C.G.	H.G.

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GSM ID	GSM139897
Assay name	WT_non-polysome_rep2
GSE experiment	GSE6024: eif3h/WT polysome loading

Microarray experiments to specifically-expressed genes

GSM ID GSM139897 Assay name WT_non-polysome_rep2 GSE experiment GSE6024: eif3h/WT polysome loading

GSM ID GSM139897

Assay name WT_non-polysome_rep2

GSE experiment GSE6024: eif3h/WT polysome loading