Microarray experiments to specifically-expressed genes

GSM ID GSM134519
Assay name Col-0_4day_red illumination_+lincomycin_rep1
GSE experiment GSE5759: red illumination w/o lincomycin

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
78.899.9190.9At5g15290831381integral membrane family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
73.599.9127.4At1g64640842772plastocyanin-like domain-containing proteinF:electron carrier activity, copper ion binding;P:unknown;C:anchored to membrane;PO.I.C.G.H.G.
49.999.8142.5At4g16515827350unknown proteinF:molecular_function unknown;P:unknown;C:endomembrane system;PO.I.C.G.H.G.
48.799.8329.5At5g53250835406AGP22 (ARABINOGALACTAN PROTEIN 22)F:unknown;P:unknown;C:anchored to membrane;PO.I.C.G.H.G.
42.399.866.1At4g22460828341protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PO.I.C.G.H.G.
40.099.8101.1At5g44920834522Toll-Interleukin-Resistance (TIR) domain-containing proteinF:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:endoplasmic reticulum;PBOO.I.C.G.H.G.
38.899.8111.7At4g25260828629invertase/pectin methylesterase inhibitor family proteinF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:shade avoidance;C:endomembrane system;PO.I.C.G.H.G.
38.799.864.2At5g04770830355CAT6 (CATIONIC AMINO ACID TRANSPORTER 6)Encodes a member of the cationic amino acid transporter (CAT) subfamily of amino acid polyamine choline transporters. Does not mediate efficient uptake of basic amino acids in yeast or Xenopus systems but can transport neutral and acidic amino acid analogs. Expressed in sink tissues. Induced during infestation of roots by the plant parasitic root-knot nematode, Meloidogyne incognita. Localized in the plasma membrane.O.I.C.G.H.G.
38.699.8320.7At5g65390836664AGP7F:unknown;P:unknown;C:anchored to membrane;BMOPFVAO.I.C.G.H.G.
37.199.763.3At3g23880821971F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:nucleus;POO.I.C.G.H.G.
36.299.7118.0At3g48970824058copper-binding family proteinF:copper ion binding, metal ion binding;P:copper ion transport, metal ion transport;C:unknown;PBOO.I.C.G.H.G.
36.199.7217.7At3g13720820581PRA8F:molecular_function unknown;P:vesicle-mediated transport;C:endoplasmic reticulum;POMFO.I.C.G.H.G.
34.699.7131.4At1g67910843119unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.C.G.H.G.
34.499.7146.7At5g02020831782unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.C.G.H.G.
33.399.768.0At1g22740838880RABG3BGTP-binding protein Rab7O.I.C.G.H.G.
32.599.7175.1At5g24570832528unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
31.599.763.1At3g05920819761heavy-metal-associated domain-containing proteinF:metal ion binding;P:metal ion transport;C:cellular_component unknown;PMOBVFAO.I.C.G.H.G.
31.599.743.1At4g11610826766C2 domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFO.I.C.G.H.G.
31.299.7111.5At1g20190838608ATEXPA11 (ARABIDOPSIS THALIANA EXPANSIN 11)member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)O.I.C.G.H.G.
30.199.7228.5At5g60660836187PIP2F:water channel activity;P:transport;C:integral to membrane, membrane;BPMOFAVO.I.C.G.H.G.
29.799.780.4At1g08500837371plastocyanin-like domain-containing proteinF:electron carrier activity, copper ion binding;P:unknown;C:anchored to membrane;PO.I.C.G.H.G.
29.599.7223.1At1g32170840109XTR4 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 4)xyloglucan endotransglycosylase-related protein (XTR4)O.I.C.G.H.G.
28.199.7102.5At4g25830828688integral membrane family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
27.499.7139.6At5g22500832311FAR1 (FATTY ACID REDUCTASE 1)F:oxidoreductase activity, acting on the CH-CH group of donors, fatty acyl-CoA reductase (alcohol-forming) activity;P:microsporogenesis, metabolic process;C:chloroplast;MBFOPO.I.C.G.H.G.
27.299.7266.7At5g10430830907AGP4 (ARABINOGALACTAN PROTEIN 4)Encodes arabinogalactan-protein (AGP4).O.I.C.G.H.G.
26.499.7106.2At5g60460836167sec61beta family proteinF:protein transporter activity;P:protein transport;C:plasma membrane;MFPOBO.I.C.G.H.G.
26.099.755.5At3g05150819677sugar transporter family proteinF:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:nucleus, membrane;BMFPOAO.I.C.G.H.G.
25.399.6107.7At1g11545837698xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putativeF:hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity, hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process, cellular glucan metabolic process;C:endomembrane system, cell wall, apoplast;PFBOO.I.C.G.H.G.
24.899.662.0At3g11600820333unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
24.399.6169.0At4g11360826738RHA1BEncodes a putative RING-H2 finger protein RHA1b.O.I.C.G.H.G.
24.399.610.3At2g18010816313auxin-responsive family proteinF:molecular_function unknown;P:response to auxin stimulus;C:unknown;POO.I.C.G.H.G.
23.899.6157.7At1g12080837760unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVAO.I.C.G.H.G.
23.299.625.3At1g17700838346PRA1.F1 (PRENYLATED RAB ACCEPTOR 1.F1)F:molecular_function unknown;P:vesicle-mediated transport;C:endoplasmic reticulum;PMOFO.I.C.G.H.G.
23.199.635.5At2g34020817963calcium ion bindingF:calcium ion binding;P:biological_process unknown;C:unknown;POMBFO.I.C.G.H.G.
22.599.6184.8At1g25230839105purple acid phosphatase family proteinF:hydrolase activity, protein serine/threonine phosphatase activity;P:biological_process unknown;C:endomembrane system;MOBPFO.I.C.G.H.G.
22.299.639.3At4g23870828486unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
21.899.635.7At5g01075831885beta-galactosidaseF:beta-galactosidase activity;P:carbohydrate metabolic process;C:endomembrane system, beta-galactosidase complex;PO.I.C.G.H.G.
21.399.666.7At5g07110830602PRA1.B6 (PRENYLATED RAB ACCEPTOR 1.B6)F:molecular_function unknown;P:vesicle-mediated transport;C:endoplasmic reticulum;PMFOO.I.C.G.H.G.
21.199.6239.4At1g28330839729DYL1 (DORMANCY-ASSOCIATED PROTEIN-LIKE 1)dormancy-associated protein (DRM1)O.I.C.G.H.G.
20.799.627.0At1g72070843538DNAJ heat shock N-terminal domain-containing proteinF:unfolded protein binding, heat shock protein binding;P:protein folding;C:unknown;BOMPFAVO.I.C.G.H.G.
20.599.625.2At3g03180821059Got1-like family proteinF:molecular_function unknown;P:vesicle-mediated transport;C:cellular_component unknown;MFOPO.I.C.G.H.G.
20.599.618.5At1g52250--O.I.C.G.H.G.
20.299.630.2At2g38480818430integral membrane protein, putativeF:molecular_function unknown;P:biological_process unknown;C:plasma membrane, membrane;PO.I.C.G.H.G.
19.999.6276.4At4g14130827051XTR7 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 7)xyloglucan endotransglycosylase-related protein (XTR7)O.I.C.G.H.G.
19.999.618.4At1g43590840943transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
19.899.664.4At3g50660824229DWF4 (DWARF 4)Encodes a 22α hydroxylase whose reaction is a rate-limiting step in brassinosteroid biosynthetic pathway. The protein is a member of CYP90B gene family. CLM is an epi-allele with small, compressed rosette, reduced internode length, and reduced fertility, appears in selfed ddm mutant plants possibly due to loss of cytosine methylation. Transcripts accumulate in actively growing tissues, and GUS expression is negatively regulated by brassinosteroids. Localized in the endoplasmic reticulum. The in vitro expressed protein can perform the C-22 hydroxylation of a variety of C27-, C28- and C29-sterols. Cholesterol was the best substrate, followed by campesterol. Sitosterol was a poor substrate.O.I.C.G.H.G.
19.899.68.6At3g03830821123auxin-responsive protein, putativeF:molecular_function unknown;P:response to auxin stimulus;C:unknown;POO.I.C.G.H.G.
19.799.66.9At1g29490839826auxin-responsive family proteinF:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO.I.C.G.H.G.
19.699.6299.1At5g09440830803EXL4 (EXORDIUM LIKE 4)F:molecular_function unknown;P:biological_process unknown;C:membrane;PBO.I.C.G.H.G.
19.699.611.3At2g14060815891S-adenosyl-L-methionine:carboxyl methyltransferase family proteinencodes a protein whose sequence is similar to SAM:salicylic acid carboxyl methyltransferase (SAMT) (GI:6002712)(Clarkia breweri) and to SAM:benzoic acid carboxyl methyltransferase (BAMT)(GI:9789277)(Antirrhinum majus)O.I.C.G.H.G.
19.499.652.3At3g62860825461esterase/lipase/thioesterase family proteinF:catalytic activity;P:unknown;C:plasma membrane;BOPMFVAO.I.C.G.H.G.
19.399.669.4At2g47930819405AGP26 (ARABINOGALACTAN PROTEIN 26)F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;OPMVBFAO.I.C.G.H.G.
19.299.639.2At5g52250835301transducin family protein / WD-40 repeat family proteinEncodes a transducin protein whose gene expression is induced by UV-B. This induction is reduced in hy5 mutant and may be a target of HY5 during UV-B response.O.I.C.G.H.G.
19.199.631.6At2g42900818891-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO.I.C.G.H.G.
18.799.5388.3At1g03870839384FLA9 (FASCICLIN-LIKE ARABINOOGALACTAN 9)fasciclin-like arabinogalactan-protein 9 (Fla9)O.I.C.G.H.G.
18.799.553.2At3g57790824949glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family proteinF:polygalacturonase activity;P:carbohydrate metabolic process;C:plasma membrane;PBFOMAVO.I.C.G.H.G.
18.399.5138.3At4g38580830015ATFP6 (FARNESYLATED PROTEIN 6)putative farnesylated protein (At4g38580) mRNA, completeO.I.C.G.H.G.
18.299.5121.1At1g30750839955unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OBMFPVO.I.C.G.H.G.
18.299.541.9At5g24170832484-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPO.I.C.G.H.G.
18.199.5196.4At2g43535818955trypsin inhibitor, putativeEncodes a defensin-like (DEFL) family protein.O.I.C.G.H.G.
18.199.596.1At5g04470830326SIM (SIAMESE)Encodes a novel nuclear 14-kD protein containing a cyclin binding motif and a motif found in ICK/KRP cell cycle inhibitor proteins. It is required for coordinating cell division and cell differentiation during the development of Arabidopsis trichomes, playing a key role in the mitosis-to-endoreduplication transition. It interacts with D-type cyclins in vivo.O.I.C.G.H.G.
18.099.559.5At1g22640838870MYB3 (MYB DOMAIN PROTEIN 3)MYB-type transcription factor (MYB3) that represses phenylpropanoid biosynthesis gene expressionO.I.C.G.H.G.
17.999.5121.3At2g47780819390rubber elongation factor (REF) protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
17.899.514.2At4g23030828402MATE efflux protein-relatedF:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFAMO.I.C.G.H.G.
17.799.5157.8At2g17710816280unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
17.699.5273.2At4g21850828273methionine sulfoxide reductase domain-containing protein / SeIR domain-containing proteinF:peptide-methionine-(S)-S-oxide reductase activity;P:biological_process unknown;C:cellular_component unknown;OBMPFAVO.I.C.G.H.G.
17.699.517.7At1g06980837208unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
17.499.525.9At4g01410828166harpin-induced family protein / HIN1 family protein / harpin-responsive family proteinF:molecular_function unknown;P:biological_process unknown;C:plasma membrane;PO.I.C.G.H.G.
17.399.5151.7At3g60140825184DIN2 (DARK INDUCIBLE 2)Encodes a protein similar to beta-glucosidase and is a member of glycoside hydrolase family 1. Expression is induced after 24 hours of dark treatment, in senescing leaves and treatment with exogenous photosynthesis inhibitor. Induction of gene expression was suppressed in excised leaves supplied with sugar. The authors suggest that the gene's expression pattern is responding to the level of sugar in the cell.O.I.C.G.H.G.
17.299.544.6At3g16690820921nodulin MtN3 family proteinF:unknown;P:biological_process unknown;C:endomembrane system, integral to membrane, membrane;PMOO.I.C.G.H.G.
17.299.527.2At3g52480824413unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
17.199.5167.0At2g43050818907ATPMEPCRDF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFMO.I.C.G.H.G.
17.099.529.9At1g22335--O.I.C.G.H.G.
16.899.5495.3At4g29020829023glycine-rich proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BMOPFVAO.I.C.G.H.G.
16.799.5348.7At2g05540815103glycine-rich proteinF:unknown;P:unknown;C:endomembrane system;MPBOFVAO.I.C.G.H.G.
16.599.5150.2At5g66170836749-F:molecular_function unknown;P:aging;C:cellular_component unknown;PBOAO.I.C.G.H.G.
16.599.514.3At2g19660816485DC1 domain-containing proteinF:molecular_function unknown;P:intracellular signaling cascade;C:cellular_component unknown;PMOO.I.C.G.H.G.
16.499.512.6At1g19510838537ATRL5 (ARABIDOPSIS RAD-LIKE 5)F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:unknown;PMOO.I.C.G.H.G.
16.299.5158.0At2g28670817416disease resistance-responsive family protein / fibroin-relatedF:molecular_function unknown;P:unknown;C:endomembrane system;BMOPFVAO.I.C.G.H.G.
16.299.5107.1At1g70710843408ATGH9B1 (ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B1)endo-1,4-beta-glucanase. Involved in cell elongation.O.I.C.G.H.G.
16.099.5169.5At1g28660839766lipase, putativeF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFMO.I.C.G.H.G.
16.099.5104.4At5g11280830998unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
15.699.5309.7At4g15610827238integral membrane family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
15.699.575.0At5g26270832696unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPO.I.C.G.H.G.
15.699.525.6At2g15830816079unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
15.599.5261.0At5g46890834734protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PO.I.C.G.H.G.
15.599.5143.8At1g63840842687zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:response to abscisic acid stimulus;C:endomembrane system;PMOFVO.I.C.G.H.G.
15.599.5102.1At1g75900843923family II extracellular lipase 3 (EXL3)F:lipase activity, carboxylesterase activity, acyltransferase activity;P:sexual reproduction;C:extracellular region;PBFOMO.I.C.G.H.G.
15.299.444.3At2g47270819340transcription factor/ transcription regulatorF:transcription factor activity, transcription regulator activity;P:regulation of transcription;C:nucleus;PO.I.C.G.H.G.
15.099.477.4At4g10810826677unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.C.G.H.G.
15.099.423.2At3g49930824155zinc finger (C2H2 type) family proteinF:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;MPOFO.I.C.G.H.G.
14.899.4301.0At4g12510826863protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PO.I.C.G.H.G.
14.899.499.4At5g43580834378serine-type endopeptidase inhibitorPredicted to encode a PR (pathogenesis-related) peptide that belongs to the PR-6 proteinase inhibitor family. Six putative PR-6-type protein encoding genes are found in Arabidopsis: At2g38900, At2g38870, At5g43570, At5g43580, At3g50020 and At3g46860.O.I.C.G.H.G.
14.799.4160.2At2g31090817665unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
14.699.4350.7At3g21720821726ICL (ISOCITRATE LYASE)Encodes a glyoxylate cycle enzyme isocitrate lyase (ICL).O.I.C.G.H.G.
14.599.426.3At5g23460832412unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
14.499.480.5At4g11190826721disease resistance-responsive family protein / dirigent family proteinF:molecular_function unknown;P:lignan biosynthetic process, defense response;C:endomembrane system;PO.I.C.G.H.G.
14.499.475.9At1g67810843107SUFE2 (SULFUR E 2)Encodes a protein capable of stimulating the cysteine desulfurase activity of CpNifS (AT1G08490) in vitro. SufE2:GFP localizes to the chloroplasts where it is likely to play a role in iron-sulfur cluster assembly. Transcript levels for this gene are high in the pollen relative to other organs based on RT-PCR analysis.O.I.C.G.H.G.
14.499.428.1At1g32120840104unknown proteinF:molecular_function unknown;P:biological_process unknown;C:membrane;MOFPBVAO.I.C.G.H.G.
14.299.471.1At1g61900842486unknown proteinF:molecular_function unknown;P:biological_process unknown;C:anchored to plasma membrane, plasma membrane, anchored to membrane;PO.I.C.G.H.G.



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