CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM134462

Assay name St.Clair_1-87_370_Mt-0_0.30mM-SA-in-0.02%-silwet_Rep3_ATH1

GSE experiment GSE5758: Expression Level Polymorphism Project (ELP) - Mt-0

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
63.5 99.8 33.3 At1g31680 - - O.I. C.G. H.G.
59.5 99.8 40.9 At5g55420 835635 - Encodes a Protease inhibitor/seed storage/LTP family protein [pseudogene] O.I. C.G. H.G.
31.0 99.7 68.2 At1g31690 840056 amine oxidase/ copper ion binding / quinone binding F:quinone binding, amine oxidase activity, copper ion binding;P:cellular amine metabolic process;C:endomembrane system;FBMOPA O.I. C.G. H.G.
23.7 99.6 44.3 At5g44570 834484 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
17.9 99.5 22.3 At5g43800 3771423 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
16.9 99.5 23.9 At2g24160 3768109 - F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
14.6 99.4 60.1 At3g47800 823934 aldose 1-epimerase family protein F:aldose 1-epimerase activity;P:galactose metabolic process, hexose metabolic process, carbohydrate metabolic process;C:endomembrane system;BOMFPA O.I. C.G. H.G.
14.6 99.4 35.6 At2g23480 816880 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
14.5 99.4 38.1 At5g64050 836526 ERS (GLUTAMATE TRNA SYNTHETASE) Glutamate-tRNA ligase. Targeted to mitochondria and chloroplast. Its inactivation causes developmental arrest of chloroplasts and mitochondria in Nicotiana benthamiana. O.I. C.G. H.G.
14.0 99.4 53.9 At1g02300 839576 cathepsin B-like cysteine protease, putative F:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis, regulation of catalytic activity;C:endomembrane system;MOPVBAF O.I. C.G. H.G.
13.9 99.4 90.8 At3g57240 824891 BG3 (BETA-1,3-GLUCANASE 3) encodes a member of glycosyl hydrolase family 17 O.I. C.G. H.G.
12.4 99.3 27.8 At1g78450 844181 SOUL heme-binding family protein F:binding;P:biological_process unknown;C:endomembrane system;OMPBA O.I. C.G. H.G.
12.3 99.3 66.0 At5g42900 834301 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
11.9 99.3 27.4 At4g39830 830142 L-ascorbate oxidase, putative F:oxidoreductase activity, L-ascorbate oxidase activity, copper ion binding;P:oxidation reduction;C:endomembrane system, extracellular region;BFPMOA O.I. C.G. H.G.
11.7 99.3 214.2 At5g55450 835638 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:response to other organism, lipid transport;C:endomembrane system;P O.I. C.G. H.G.
11.7 99.3 36.4 At1g07050 837216 CONSTANS-like protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POF O.I. C.G. H.G.
10.3 99.2 19.2 At4g23610 828461 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
9.9 99.1 36.5 At1g51610 841586 cation efflux family protein / metal tolerance protein, putative (MTPc4) F:cation transmembrane transporter activity, efflux transmembrane transporter activity;P:cation transport;C:membrane;BOMAP O.I. C.G. H.G.
9.7 99.1 189.8 At5g10760 830943 aspartyl protease family protein F:aspartic-type endopeptidase activity;P:proteolysis;C:apoplast;PMFO O.I. C.G. H.G.
9.3 99.1 41.6 At2g46450 819253 ATCNGC12 Member of Cyclic nucleotide gated channel family.Positive regulator of resistance against avirulent fungal pathogen.Suppresses the phenotype conferred by cpr22 in a dosage-dependent manner. O.I. C.G. H.G.
9.2 99.1 198.3 At2g42530 818853 COR15B (COLD REGULATED 15B) F:unknown;P:response to cold;C:chloroplast, chloroplast stroma, chloroplast envelope;PBOMF O.I. C.G. H.G.
9.2 99.1 86.0 At2g40750 818670 WRKY54 member of WRKY Transcription Factor; Group III O.I. C.G. H.G.
9.1 99.1 396.3 At2g14610 815949 PR1 (PATHOGENESIS-RELATED GENE 1) PR1 gene expression is induced in response to a variety of pathogens. It is a useful molecular marker for the SAR response. Though the Genbank record for the cDNA associated to this gene is called 'PR-1-like', the sequence actually corresponds to PR1. Expression of this gene is salicylic-acid responsive. O.I. C.G. H.G.
9.1 99.1 41.1 At2g39920 818579 acid phosphatase class B family protein F:acid phosphatase activity;P:response to cadmium ion;C:cellular_component unknown;PBO O.I. C.G. H.G.
8.8 99.0 69.7 At1g64360 842743 unknown protein F:molecular_function unknown;P:response to oxidative stress;C:cellular_component unknown;P O.I. C.G. H.G.
8.7 99.0 42.4 At2g18680 816383 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PBO O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
63.5	99.8	33.3	At1g31680		-	-	O.I.	C.G.	H.G.
59.5	99.8	40.9	At5g55420	835635	-	Encodes a Protease inhibitor/seed storage/LTP family protein [pseudogene]	O.I.	C.G.	H.G.
31.0	99.7	68.2	At1g31690	840056	amine oxidase/ copper ion binding / quinone binding	F:quinone binding, amine oxidase activity, copper ion binding;P:cellular amine metabolic process;C:endomembrane system;FBMOPA	O.I.	C.G.	H.G.
23.7	99.6	44.3	At5g44570	834484	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
17.9	99.5	22.3	At5g43800	3771423	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
16.9	99.5	23.9	At2g24160	3768109	-	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
14.6	99.4	60.1	At3g47800	823934	aldose 1-epimerase family protein	F:aldose 1-epimerase activity;P:galactose metabolic process, hexose metabolic process, carbohydrate metabolic process;C:endomembrane system;BOMFPA	O.I.	C.G.	H.G.
14.6	99.4	35.6	At2g23480	816880	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
14.5	99.4	38.1	At5g64050	836526	ERS (GLUTAMATE TRNA SYNTHETASE)	Glutamate-tRNA ligase. Targeted to mitochondria and chloroplast. Its inactivation causes developmental arrest of chloroplasts and mitochondria in Nicotiana benthamiana.	O.I.	C.G.	H.G.
14.0	99.4	53.9	At1g02300	839576	cathepsin B-like cysteine protease, putative	F:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis, regulation of catalytic activity;C:endomembrane system;MOPVBAF	O.I.	C.G.	H.G.
13.9	99.4	90.8	At3g57240	824891	BG3 (BETA-1,3-GLUCANASE 3)	encodes a member of glycosyl hydrolase family 17	O.I.	C.G.	H.G.
12.4	99.3	27.8	At1g78450	844181	SOUL heme-binding family protein	F:binding;P:biological_process unknown;C:endomembrane system;OMPBA	O.I.	C.G.	H.G.
12.3	99.3	66.0	At5g42900	834301	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
11.9	99.3	27.4	At4g39830	830142	L-ascorbate oxidase, putative	F:oxidoreductase activity, L-ascorbate oxidase activity, copper ion binding;P:oxidation reduction;C:endomembrane system, extracellular region;BFPMOA	O.I.	C.G.	H.G.
11.7	99.3	214.2	At5g55450	835638	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:response to other organism, lipid transport;C:endomembrane system;P	O.I.	C.G.	H.G.
11.7	99.3	36.4	At1g07050	837216	CONSTANS-like protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POF	O.I.	C.G.	H.G.
10.3	99.2	19.2	At4g23610	828461	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
9.9	99.1	36.5	At1g51610	841586	cation efflux family protein / metal tolerance protein, putative (MTPc4)	F:cation transmembrane transporter activity, efflux transmembrane transporter activity;P:cation transport;C:membrane;BOMAP	O.I.	C.G.	H.G.
9.7	99.1	189.8	At5g10760	830943	aspartyl protease family protein	F:aspartic-type endopeptidase activity;P:proteolysis;C:apoplast;PMFO	O.I.	C.G.	H.G.
9.3	99.1	41.6	At2g46450	819253	ATCNGC12	Member of Cyclic nucleotide gated channel family.Positive regulator of resistance against avirulent fungal pathogen.Suppresses the phenotype conferred by cpr22 in a dosage-dependent manner.	O.I.	C.G.	H.G.
9.2	99.1	198.3	At2g42530	818853	COR15B (COLD REGULATED 15B)	F:unknown;P:response to cold;C:chloroplast, chloroplast stroma, chloroplast envelope;PBOMF	O.I.	C.G.	H.G.
9.2	99.1	86.0	At2g40750	818670	WRKY54	member of WRKY Transcription Factor; Group III	O.I.	C.G.	H.G.
9.1	99.1	396.3	At2g14610	815949	PR1 (PATHOGENESIS-RELATED GENE 1)	PR1 gene expression is induced in response to a variety of pathogens. It is a useful molecular marker for the SAR response. Though the Genbank record for the cDNA associated to this gene is called 'PR-1-like', the sequence actually corresponds to PR1. Expression of this gene is salicylic-acid responsive.	O.I.	C.G.	H.G.
9.1	99.1	41.1	At2g39920	818579	acid phosphatase class B family protein	F:acid phosphatase activity;P:response to cadmium ion;C:cellular_component unknown;PBO	O.I.	C.G.	H.G.
8.8	99.0	69.7	At1g64360	842743	unknown protein	F:molecular_function unknown;P:response to oxidative stress;C:cellular_component unknown;P	O.I.	C.G.	H.G.
8.7	99.0	42.4	At2g18680	816383	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PBO	O.I.	C.G.	H.G.

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GSM ID	GSM134462
Assay name	St.Clair_1-87_370_Mt-0_0.30mM-SA-in-0.02%-silwet_Rep3_ATH1
GSE experiment	GSE5758: Expression Level Polymorphism Project (ELP) - Mt-0

Microarray experiments to specifically-expressed genes

GSM ID GSM134462 Assay name St.Clair_1-87_370_Mt-0_0.30mM-SA-in-0.02%-silwet_Rep3_ATH1 GSE experiment GSE5758: Expression Level Polymorphism Project (ELP) - Mt-0

GSM ID GSM134462

Assay name St.Clair_1-87_370_Mt-0_0.30mM-SA-in-0.02%-silwet_Rep3_ATH1

GSE experiment GSE5758: Expression Level Polymorphism Project (ELP) - Mt-0