Microarray experiments to specifically-expressed genes

GSM ID GSM134459
Assay name St.Clair_1-84_379_Mt-0_0.30mM-SA-in-0.02%-silwet_Rep3_ATH1
GSE experiment GSE5758: Expression Level Polymorphism Project (ELP) - Mt-0

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
280.6100.088.8At5g55420835635-Encodes a Protease inhibitor/seed storage/LTP family protein [pseudogene]O.I.C.G.H.G.
241.5100.0141.6At5g44570834484unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
122.799.9201.8At4g39030830058EDS5 (ENHANCED DISEASE SUSCEPTIBILITY 5)Encodes an orphan multidrug and toxin extrusion transporter. Essential component of salicylic acid-dependent signaling for disease resistance. Member of the MATE-transporter family. Expression induced by salicylic acid. Mutants are salicylic acid-deficient.O.I.C.G.H.G.
98.799.9101.2At1g73805843716calmodulin bindingF:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
89.899.944.0At5g22530832314unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.C.G.H.G.
85.899.9162.6At1g74710843810isochorismate synthase 1 (ICS1) / isochorismate mutaseEncodes a protein with isochorismate synthase activity. Mutants fail to accumulate salicylic acid. Its function may be redundant with that of ICS2 (AT1G18870).O.I.C.G.H.G.
85.199.9180.4At1g73800--O.I.C.G.H.G.
77.499.950.8At4g11370826739RHA1AEncodes a putative RING-H2 finger protein RHA1a.O.I.C.G.H.G.
73.499.941.5At4g18250827551receptor serine/threonine kinase, putativeF:transmembrane receptor protein serine/threonine kinase activity, kinase activity;P:protein amino acid phosphorylation;C:unknown;MPOBFVAO.I.C.G.H.G.
63.999.8149.1At5g13320831173PBS3 (AVRPPHB SUSCEPTIBLE 3)Encodes PBS3 (avrPphB susceptible), also known as GDG1 (GH3-Like Defense Gene 1), WIN3 (HopW1-1-Interacting 3). Involved in disease-resistance signaling pathway. Required for accumulation of salicylic acid, activation of defense responses and resistance to Pseudomonas syringae. Expression detected in cotyledons, true leaves, hypocotyls and occasionally in some parts of roots from 10-day-old seedlings. No expression was detected in root, stem, rosette or cauline leaves of mature 4- to 5-week-old plants.O.I.C.G.H.G.
61.499.873.0At2g23480816880transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
55.499.896.6At2g45760819184BAP2 (BON ASSOCIATION PROTEIN 2)encodes a protein that is similar to BONZAI1-binding protein BAP1.O.I.C.G.H.G.
54.899.8113.7At5g52810835358ornithine cyclodeaminase/mu-crystallin family proteinF:structural constituent of eye lens, binding, catalytic activity;P:arginine catabolic process to glutamate, nopaline catabolic process, metabolic process, octopine catabolic process;C:chloroplast;BOMAFPO.I.C.G.H.G.
53.799.8106.7At1g02450837800NIMIN1 (NIM1-INTERACTING 1)NIMIN1 modulates PR gene expression according the following model: NPR1 forms a ternary complex with NIMIN1 and TGA factors upon SAR induction that binds to a positive regulatory cis-element of the PR-1 promoter, termed LS7. This leads to PR-1 gene induction. NIMIN1 decreases transcriptional activation, possibly through its EAR motif, which results in fine-tuning of PR-1 gene expression.O.I.C.G.H.G.
53.099.8139.5At2g30770817628CYP71A13 (cytochrome P450, family 71, subfamily A, polypeptide 13)putative cytochrome P450O.I.C.G.H.G.
51.599.847.4At4g04490825779protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
50.799.868.4At3g52430824408PAD4 (PHYTOALEXIN DEFICIENT 4)Encodes a lipase-like gene that is important for salicylic acid signaling and function in resistance (R) gene-mediated and basal plant disease resistance. PAD4 can interact directly with EDS1, another disease resistance signaling protein. Expressed at elevated level in response to green peach aphid (GPA) feeding, and modulates the GPA feeding-induced leaf senescence through a mechanism that doesn't require camalexin synthesis and salicylic acid (SA) signaling.O.I.C.G.H.G.
50.299.864.1At1g08050837321zinc finger (C3HC4-type RING finger) family proteinF:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:unknown;C:plasma membrane;BMOPFAVO.I.C.G.H.G.
47.499.882.0At1g66090842923disease resistance protein (TIR-NBS class), putativeF:transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane, chloroplast;PBOMFO.I.C.G.H.G.
47.099.883.0At4g23210828420protein kinase family proteinEncodes a Cysteine-rich receptor-like kinase (CRK13). Overexpression of CRK13 leads to hypersensitive response cell death, and induces defense against pathogens by causing increased accumulation of salicylic acid.O.I.C.G.H.G.
46.699.867.9At2g47130819326short-chain dehydrogenase/reductase (SDR) family proteinF:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAVO.I.C.G.H.G.
45.399.869.2At4g22530828348embryo-abundant protein-relatedF:methyltransferase activity;P:metabolic process;C:cellular_component unknown;BPFMOAO.I.C.G.H.G.
44.999.871.3At5g25250832596-F:molecular_function unknown;P:biological_process unknown;C:plasma membrane, vacuole;BOMFPAVO.I.C.G.H.G.
44.799.862.0At4g03450827913ankyrin repeat family proteinF:protein binding;P:unknown;C:unknown;MOPFBVAO.I.C.G.H.G.
44.499.8189.1At2g40750818670WRKY54member of WRKY Transcription Factor; Group IIIO.I.C.G.H.G.
44.499.826.9At1g21240838719WAK3 (wall associated kinase 3)encodes a wall-associated kinaseO.I.C.G.H.G.
44.199.8161.7At3g47540823908chitinase, putativeF:chitinase activity;P:cell wall macromolecule catabolic process;C:endomembrane system;PBMOFO.I.C.G.H.G.
41.699.844.4At1g51920841620unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
41.599.869.1At1g51660841591ATMKK4 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 4)Encodes a mitogen-activated map kinase kinase (there are nine in Arabidopsis) involved in innate immunity. This protein activates MPK3/MPK6 and early-defense genes redundantly with MKK5. In plants with both MKK5 and MKK6 levels reduced by RNAi plants, floral organs do not abscise suggestion a role for both proteins in mediating floral organ abscission.O.I.C.G.H.G.
41.199.849.3At1g70690843406HWI1 (HOPW1-1-INDUCED GENE1)Encodes a plasmodesmal protein that may be involved in the intercellular movement of molecules through the plasmodesmata. The protein has two DUF26 domains and a single transmembrane domain.O.I.C.G.H.G.
40.799.852.1At3g09010820053protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVAO.I.C.G.H.G.
38.699.831.0At5g24540832525BGLU31 (BETA GLUCOSIDASE 31)F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:response to other organism;C:endomembrane system;BOPMFAO.I.C.G.H.G.
38.499.815.6At3g57950824964unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.C.G.H.G.
38.299.828.6At1g57560842131AtMYB50 (myb domain protein 50)Member of the R2R3 factor gene family.O.I.C.G.H.G.
38.199.885.2At1g01560839523ATMPK11member of MAP KinaseO.I.C.G.H.G.
37.399.765.5At3g48090823964EDS1 (enhanced disease susceptibility 1)Component of R gene-mediated disease resistance in Arabidopsis thaliana with homology to eukaryotic lipases.O.I.C.G.H.G.
35.699.7145.4At3g57240824891BG3 (BETA-1,3-GLUCANASE 3)encodes a member of glycosyl hydrolase family 17O.I.C.G.H.G.
35.499.747.4At4g39830830142L-ascorbate oxidase, putativeF:oxidoreductase activity, L-ascorbate oxidase activity, copper ion binding;P:oxidation reduction;C:endomembrane system, extracellular region;BFPMOAO.I.C.G.H.G.
35.299.7105.0At5g51830835258pfkB-type carbohydrate kinase family proteinF:kinase activity, ribokinase activity;P:response to cadmium ion;C:cellular_component unknown;BOPAMFO.I.C.G.H.G.
34.699.7223.6At3g48640824024unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
34.599.7111.4At1g13470837907unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
33.799.780.5At3g22160821780VQ motif-containing proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;POMFBVO.I.C.G.H.G.
33.599.751.9At2g23680816899stress-responsive protein, putativeF:molecular_function unknown;P:response to stress;C:membrane;PO.I.C.G.H.G.
33.099.7177.2At3g11340820307UDP-glucoronosyl/UDP-glucosyl transferase family proteinF:transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity;P:metabolic process;C:endomembrane system;PMBVOFO.I.C.G.H.G.
32.599.761.7At4g29740829096CKX4 (CYTOKININ OXIDASE 4)It encodes a protein whose sequence is similar to cytokinin oxidase/dehydrogenase, which catalyzes the degradation of cytokinins.O.I.C.G.H.G.
32.499.7136.9At2g04450814985ATNUDT6 (Arabidopsis thaliana Nudix hydrolase homolog 6)F:ADP-ribose diphosphatase activity, hydrolase activity, NAD or NADH binding;P:response to other organism;C:cytosol;OBMPAFVO.I.C.G.H.G.
32.199.7222.2At3g60420825213-F:unknown;P:unknown;C:cellular_component unknown;OBFPMO.I.C.G.H.G.
32.099.7121.7At1g57630842139disease resistance protein (TIR class), putativeF:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;PO.I.C.G.H.G.
31.799.784.9At1g32940840188SBT3.5F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:apoplast;BPOAFMO.I.C.G.H.G.
31.799.730.8At5g43910834413pfkB-type carbohydrate kinase family proteinF:kinase activity, ribokinase activity;P:D-ribose metabolic process;C:cellular_component unknown;BOMPAFO.I.C.G.H.G.
31.599.784.0At1g02270839381endonuclease/exonuclease/phosphatase family protein / calcium-binding EF hand family proteinF:catalytic activity, calcium ion binding;P:response to cold;C:nucleus;MPOFO.I.C.G.H.G.
31.499.731.5At1g33720840263CYP76C6member of CYP76CO.I.C.G.H.G.
31.099.733.2At1g32960840190SBT3.3F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:apoplast, plant-type cell wall;BPOAFMO.I.C.G.H.G.
30.999.793.1At5g22570832320WRKY38member of WRKY Transcription Factor; Group IIIO.I.C.G.H.G.
30.199.761.4At4g28490828967HAE (HAESA)member of Receptor kinase-like protein familyO.I.C.G.H.G.
30.199.753.5At3g21080821660ABC transporter-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
29.699.7108.7At1g67810843107SUFE2 (SULFUR E 2)Encodes a protein capable of stimulating the cysteine desulfurase activity of CpNifS (AT1G08490) in vitro. SufE2:GFP localizes to the chloroplasts where it is likely to play a role in iron-sulfur cluster assembly. Transcript levels for this gene are high in the pollen relative to other organs based on RT-PCR analysis.O.I.C.G.H.G.
29.199.79.5At4g30230829146unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
26.299.7103.3At1g22070838812TGA3Encodes a transcription factor. Like other TGAla-related factors, TGA3 has a highly conserved bZIP region and exhibits similar DNA-binding properties.O.I.C.G.H.G.
25.999.7107.1At2g19190816436FRK1 (FLG22-INDUCED RECEPTOR-LIKE KINASE 1)Receptor-like protein kinase. Involved in early defense signaling.O.I.C.G.H.G.
25.899.744.5At4g23220828421kinaseF:kinase activity;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVAO.I.C.G.H.G.
25.799.741.6At5g67340836869armadillo/beta-catenin repeat family protein / U-box domain-containing proteinF:ubiquitin-protein ligase activity, binding;P:protein ubiquitination;C:endomembrane system, ubiquitin ligase complex;PMOFBO.I.C.G.H.G.
25.799.723.7At1g16420838212MC8 (METACASPASE 8)Encodes a metacaspase (cysteine-type endopeptidase) that is involved in promoting programmed cell death in response to hydrogen peroxide (H2O2), UV light, and methyl viologen (MV). Transcript levels rise in response to UV-C, H2O2, and MV. In vitro assays demonstrate that this enzyme has a preference for cleaving after an arginine residue, and it has a pH optimum of 8.0.O.I.C.G.H.G.
25.599.760.0At1g34750840379protein phosphatase 2C, putative / PP2C, putativeF:protein serine/threonine phosphatase activity, catalytic activity;P:biological_process unknown;C:plasma membrane;PMOBFVAO.I.C.G.H.G.
25.399.667.6At5g01980831911zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;MPOFVBO.I.C.G.H.G.
25.099.634.3At2g42950818896unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPOO.I.C.G.H.G.
24.699.656.4At5g56340835734zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVBO.I.C.G.H.G.
24.399.6118.9At2g46400819248WRKY46member of WRKY Transcription Factor; Group IIIO.I.C.G.H.G.
24.199.677.6At4g34390829589XLG2 (extra-large GTP-binding protein 2)F:guanyl nucleotide binding, signal transducer activity;P:in 7 processes;C:nucleus;MFPOBO.I.C.G.H.G.
24.199.663.5At3g54150824582embryo-abundant protein-relatedF:methyltransferase activity;P:metabolic process;C:cellular_component unknown;BPFMOAO.I.C.G.H.G.
24.099.6110.6At5g26920832750CBP60G (CAM-BINDING PROTEIN 60-LIKE.G)Encodes a calmodulin-binding protein CBP60g (calmodulin binding protein 60-like.g). The calmodulin-binding domain is located near the N-terminus; calmodulin binding is dependent on Ca(2+). Inducible by both bacterial pathogen and MAMP (microbe-associated molecular pattern) treatments. Bacterial growth is enhanced in cbp60g mutants. cbp60g mutants also show defects in salicylic acid (SA) accumulation and SA signaling.O.I.C.G.H.G.
23.699.623.1At3g57460824913catalytic/ metal ion binding / metalloendopeptidase/ zinc ion bindingF:metalloendopeptidase activity, zinc ion binding, catalytic activity, metal ion binding;P:proteolysis;C:cellular_component unknown;MBFPOO.I.C.G.H.G.
23.499.628.2At2g241603768109-F:unknown;P:unknown;C:unknownO.I.C.G.H.G.
23.299.618.2At4g22980828397-F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PMFOBAO.I.C.G.H.G.
23.199.665.5At1g67800843106copine-relatedF:protein binding, zinc ion binding;P:N-terminal protein myristoylation;C:unknown;MOPVFO.I.C.G.H.G.
23.199.664.3At1g23850838996unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
22.899.673.6At3g13950820608unknown proteinF:molecular_function unknown;P:unknown;C:unknown;PO.I.C.G.H.G.
22.799.650.8At4g23150828414protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
22.699.628.4At4g23610828461unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
22.699.624.1At4g25110828614AtMC2 (metacaspase 2)F:cysteine-type endopeptidase activity;P:proteolysis;C:unknown;POMFBVAO.I.C.G.H.G.
22.599.638.7At1g78410844177VQ motif-containing proteinF:molecular_function unknown;P:response to oxidative stress;C:cellular_component unknown;PO.I.C.G.H.G.
22.499.625.0At5g438003771423transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
22.399.6112.0At2g38290818409ATAMT2 (AMMONIUM TRANSPORTER 2)encodes a high-affinity ammonium transporter, which is expressed in shoot and root. Expression in root and shoot is under nitrogen and carbon dioxide regulation, respectively.O.I.C.G.H.G.
22.299.666.9At5g38900833882DSBA oxidoreductase family proteinF:protein disulfide oxidoreductase activity;P:biological_process unknown;C:cellular_component unknown;BOFPMAO.I.C.G.H.G.
22.299.636.6At1g77810844443galactosyltransferase family proteinF:transferase activity, transferring glycosyl groups, beta-1,3-galactosyltransferase activity;P:protein amino acid glycosylation;C:Golgi apparatus;MPOBO.I.C.G.H.G.
22.199.695.4At1g15520838122PDR12 (PLEIOTROPIC DRUG RESISTANCE 12)ABC transporter family involved in resistant to lead. Localizes to plasma membrane. Upregulated by lead. Expressed in leaves, flowers. Not expressed in roots.O.I.C.G.H.G.
21.799.633.0At4g23200828419protein kinase family proteinF:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:vacuole;MPOBFVAO.I.C.G.H.G.
21.799.622.1At3g24090821995glutamine-fructose-6-phosphate transaminase (isomerizing)/ sugar binding / transaminaseF:sugar binding, transaminase activity, glutamine-fructose-6-phosphate transaminase (isomerizing) activity;P:carbohydrate biosynthetic process, carbohydrate metabolic process, metabolic process;C:cytoplasm;OBMAFPVO.I.C.G.H.G.
21.699.6243.3At2g37710818348RLK (receptor lectin kinase)Induced in response to Salicylic acid.O.I.C.G.H.G.
21.699.627.1At1g18380--O.I.C.G.H.G.
21.599.6147.9At3g26830822298PAD3 (PHYTOALEXIN DEFICIENT 3)Mutations in pad3 are defective in biosynthesis of the indole derived phytoalexin camalexin. Encodes a cytochrome P450 enzyme that catalyzes the conversion of dihydrocamalexic acid to camalexin.O.I.C.G.H.G.
21.399.6127.6At4g35180829671LHT7 (Lys/His transporter 7)F:amino acid transmembrane transporter activity;P:amino acid transport;C:membrane;PFMOBO.I.C.G.H.G.
20.899.6270.8At5g19240832044unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
20.899.654.0At1g30040839883ATGA2OX2 (GIBBERELLIN 2-OXIDASE)Encodes a gibberellin 2-oxidase. AtGA2OX2 expression is responsive to cytokinin and KNOX activities.O.I.C.G.H.G.
20.799.6164.4At3g56710824838SIB1 (SIGMA FACTOR BINDING PROTEIN 1)Sig1 binding protein; interacts with Sig1R4. As well as Sig1, SibI is imported into chloroplasts and its expression is light-dependent in mature chloroplasts.O.I.C.G.H.G.
20.699.679.7At1g72900843621disease resistance protein (TIR-NBS class), putativeF:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;PBMOO.I.C.G.H.G.
20.699.664.4At3g21520821706unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
20.699.638.7At1g28190839713unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFBO.I.C.G.H.G.
20.599.625.9At2g04430814983atnudt5 (Arabidopsis thaliana Nudix hydrolase homolog 5)F:hydrolase activity;P:unknown;C:cytosol;BOMPAFVO.I.C.G.H.G.
20.299.622.2At1g72280843560AERO1 (Arabidopsis endoplasmic reticulum oxidoreductins 1)endoplasmic reticulum oxidoreductinO.I.C.G.H.G.



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