CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM134457

Assay name St.Clair_1-82_294_Mt-0_0.30mM-SA-in-0.02%-silwet_Rep1_ATH1

GSE experiment GSE5758: Expression Level Polymorphism Project (ELP) - Mt-0

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
460.0 100.0 113.7 At5g55420 835635 - Encodes a Protease inhibitor/seed storage/LTP family protein [pseudogene] O.I. C.G. H.G.
361.6 100.0 246.8 At2g45760 819184 BAP2 (BON ASSOCIATION PROTEIN 2) encodes a protein that is similar to BONZAI1-binding protein BAP1. O.I. C.G. H.G.
221.5 100.0 69.1 At5g22530 832314 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
187.7 100.0 199.5 At1g02450 837800 NIMIN1 (NIM1-INTERACTING 1) NIMIN1 modulates PR gene expression according the following model: NPR1 forms a ternary complex with NIMIN1 and TGA factors upon SAR induction that binds to a positive regulatory cis-element of the PR-1 promoter, termed LS7. This leads to PR-1 gene induction. NIMIN1 decreases transcriptional activation, possibly through its EAR motif, which results in fine-tuning of PR-1 gene expression. O.I. C.G. H.G.
178.9 100.0 108.9 At1g78410 844177 VQ motif-containing protein F:molecular_function unknown;P:response to oxidative stress;C:cellular_component unknown;P O.I. C.G. H.G.
130.4 99.9 57.0 At5g24540 832525 BGLU31 (BETA GLUCOSIDASE 31) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:response to other organism;C:endomembrane system;BOPMFA O.I. C.G. H.G.
130.0 99.9 103.9 At5g44570 834484 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
118.0 99.9 62.7 At4g11370 826739 RHA1A Encodes a putative RING-H2 finger protein RHA1a. O.I. C.G. H.G.
110.8 99.9 48.7 At1g57560 842131 AtMYB50 (myb domain protein 50) Member of the R2R3 factor gene family. O.I. C.G. H.G.
96.0 99.9 178.5 At4g39030 830058 EDS5 (ENHANCED DISEASE SUSCEPTIBILITY 5) Encodes an orphan multidrug and toxin extrusion transporter. Essential component of salicylic acid-dependent signaling for disease resistance. Member of the MATE-transporter family. Expression induced by salicylic acid. Mutants are salicylic acid-deficient. O.I. C.G. H.G.
89.3 99.9 145.2 At5g52810 835358 ornithine cyclodeaminase/mu-crystallin family protein F:structural constituent of eye lens, binding, catalytic activity;P:arginine catabolic process to glutamate, nopaline catabolic process, metabolic process, octopine catabolic process;C:chloroplast;BOMAFP O.I. C.G. H.G.
80.3 99.9 89.1 At2g47130 819326 short-chain dehydrogenase/reductase (SDR) family protein F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAV O.I. C.G. H.G.
78.9 99.9 85.3 At3g52430 824408 PAD4 (PHYTOALEXIN DEFICIENT 4) Encodes a lipase-like gene that is important for salicylic acid signaling and function in resistance (R) gene-mediated and basal plant disease resistance. PAD4 can interact directly with EDS1, another disease resistance signaling protein. Expressed at elevated level in response to green peach aphid (GPA) feeding, and modulates the GPA feeding-induced leaf senescence through a mechanism that doesn't require camalexin synthesis and salicylic acid (SA) signaling. O.I. C.G. H.G.
75.9 99.9 88.8 At1g73805 843716 calmodulin binding F:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
73.8 99.9 41.6 At4g18250 827551 receptor serine/threonine kinase, putative F:transmembrane receptor protein serine/threonine kinase activity, kinase activity;P:protein amino acid phosphorylation;C:unknown;MPOBFVA O.I. C.G. H.G.
73.5 99.9 243.4 At2g40750 818670 WRKY54 member of WRKY Transcription Factor; Group III O.I. C.G. H.G.
65.3 99.8 111.6 At1g01560 839523 ATMPK11 member of MAP Kinase O.I. C.G. H.G.
65.2 99.8 150.6 At5g13320 831173 PBS3 (AVRPPHB SUSCEPTIBLE 3) Encodes PBS3 (avrPphB susceptible), also known as GDG1 (GH3-Like Defense Gene 1)， WIN3 (HopW1-1-Interacting 3). Involved in disease-resistance signaling pathway. Required for accumulation of salicylic acid, activation of defense responses and resistance to Pseudomonas syringae. Expression detected in cotyledons, true leaves, hypocotyls and occasionally in some parts of roots from 10-day-old seedlings. No expression was detected in root, stem, rosette or cauline leaves of mature 4- to 5-week-old plants. O.I. C.G. H.G.
60.5 99.8 53.5 At1g51920 841620 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
56.7 99.8 147.2 At1g73800 - - O.I. C.G. H.G.
53.3 99.8 59.6 At3g09010 820053 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA O.I. C.G. H.G.
51.6 99.8 69.9 At3g21080 821660 ABC transporter-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
50.2 99.8 171.1 At2g46400 819248 WRKY46 member of WRKY Transcription Factor; Group III O.I. C.G. H.G.
49.7 99.8 219.8 At5g52760 835353 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:cellular_component unknown;P O.I. C.G. H.G.
48.1 99.8 65.7 At1g56150 842068 auxin-responsive family protein F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO O.I. C.G. H.G.
47.5 99.8 97.9 At3g21520 821706 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
46.7 99.8 17.3 At3g57950 824964 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
46.5 99.8 40.8 At4g23610 828461 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
43.0 99.8 77.9 At1g34750 840379 protein phosphatase 2C, putative / PP2C, putative F:protein serine/threonine phosphatase activity, catalytic activity;P:biological_process unknown;C:plasma membrane;PMOBFVA O.I. C.G. H.G.
42.9 99.8 124.2 At1g13470 837907 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
42.9 99.8 29.4 At5g62770 836398 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PMOF O.I. C.G. H.G.
42.3 99.8 158.3 At3g47540 823908 chitinase, putative F:chitinase activity;P:cell wall macromolecule catabolic process;C:endomembrane system;PBMOF O.I. C.G. H.G.
41.6 99.8 15.0 At5g66890 836823 disease resistance protein (CC-NBS-LRR class), putative F:unknown;P:defense response;C:unknown;PMBOFAV O.I. C.G. H.G.
40.4 99.8 72.2 At5g56340 835734 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVB O.I. C.G. H.G.
40.2 99.8 75.5 At1g66090 842923 disease resistance protein (TIR-NBS class), putative F:transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane, chloroplast;PBOMF O.I. C.G. H.G.
39.7 99.8 34.4 At5g43910 834413 pfkB-type carbohydrate kinase family protein F:kinase activity, ribokinase activity;P:D-ribose metabolic process;C:cellular_component unknown;BOMPAF O.I. C.G. H.G.
39.2 99.8 67.2 At1g51660 841591 ATMKK4 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 4) Encodes a mitogen-activated map kinase kinase (there are nine in Arabidopsis) involved in innate immunity. This protein activates MPK3/MPK6 and early-defense genes redundantly with MKK5. In plants with both MKK5 and MKK6 levels reduced by RNAi plants, floral organs do not abscise suggestion a role for both proteins in mediating floral organ abscission. O.I. C.G. H.G.
38.1 99.8 242.0 At3g60420 825213 - F:unknown;P:unknown;C:cellular_component unknown;OBFPM O.I. C.G. H.G.
38.0 99.8 148.1 At2g04450 814985 ATNUDT6 (Arabidopsis thaliana Nudix hydrolase homolog 6) F:ADP-ribose diphosphatase activity, hydrolase activity, NAD or NADH binding;P:response to other organism;C:cytosol;OBMPAFV O.I. C.G. H.G.
38.0 99.8 51.0 At1g23840 838995 unknown protein F:unknown;P:unknown;C:endomembrane system;P O.I. C.G. H.G.
37.8 99.8 55.1 At2g23680 816899 stress-responsive protein, putative F:molecular_function unknown;P:response to stress;C:membrane;P O.I. C.G. H.G.
37.6 99.7 89.2 At5g47070 834753 protein kinase, putative F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA O.I. C.G. H.G.
37.5 99.7 65.6 At3g48090 823964 EDS1 (enhanced disease susceptibility 1) Component of R gene-mediated disease resistance in Arabidopsis thaliana with homology to eukaryotic lipases. O.I. C.G. H.G.
37.1 99.7 91.0 At1g02270 839381 endonuclease/exonuclease/phosphatase family protein / calcium-binding EF hand family protein F:catalytic activity, calcium ion binding;P:response to cold;C:nucleus;MPOF O.I. C.G. H.G.
36.4 99.7 56.2 At2g23480 816880 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
36.1 99.7 63.9 At5g25250 832596 - F:molecular_function unknown;P:biological_process unknown;C:plasma membrane, vacuole;BOMFPAV O.I. C.G. H.G.
36.0 99.7 71.1 At3g50920 824256 phosphatidic acid phosphatase-related / PAP2-related F:catalytic activity;P:biological_process unknown;C:chloroplast, membrane;MFPOB O.I. C.G. H.G.
35.8 99.7 6.2 At4g05030 825845 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:mitochondrion;P O.I. C.G. H.G.
35.7 99.7 39.5 At4g04490 825779 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
35.6 99.7 101.2 At5g39670 833963 calcium-binding EF hand family protein F:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;MPFOB O.I. C.G. H.G.
35.5 99.7 105.4 At5g51830 835258 pfkB-type carbohydrate kinase family protein F:kinase activity, ribokinase activity;P:response to cadmium ion;C:cellular_component unknown;BOPAMF O.I. C.G. H.G.
35.2 99.7 99.5 At5g22570 832320 WRKY38 member of WRKY Transcription Factor; Group III O.I. C.G. H.G.
34.5 99.7 78.5 At1g23850 838996 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
34.2 99.7 54.2 At4g03450 827913 ankyrin repeat family protein F:protein binding;P:unknown;C:unknown;MOPFBVA O.I. C.G. H.G.
33.9 99.7 109.8 At3g26210 822222 CYP71B23 putative cytochrome P450 O.I. C.G. H.G.
33.5 99.7 59.5 At4g22530 828348 embryo-abundant protein-related F:methyltransferase activity;P:metabolic process;C:cellular_component unknown;BPFMOA O.I. C.G. H.G.
33.4 99.7 62.9 At3g55470 824713 C2 domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOF O.I. C.G. H.G.
33.3 99.7 219.2 At3g48640 824024 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
33.3 99.7 27.4 At3g24090 821995 glutamine-fructose-6-phosphate transaminase (isomerizing)/ sugar binding / transaminase F:sugar binding, transaminase activity, glutamine-fructose-6-phosphate transaminase (isomerizing) activity;P:carbohydrate biosynthetic process, carbohydrate metabolic process, metabolic process;C:cytoplasm;OBMAFPV O.I. C.G. H.G.
32.9 99.7 123.5 At1g57630 842139 disease resistance protein (TIR class), putative F:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;P O.I. C.G. H.G.
32.6 99.7 32.1 At1g33720 840263 CYP76C6 member of CYP76C O.I. C.G. H.G.
31.8 99.7 99.0 At1g74710 843810 isochorismate synthase 1 (ICS1) / isochorismate mutase Encodes a protein with isochorismate synthase activity. Mutants fail to accumulate salicylic acid. Its function may be redundant with that of ICS2 (AT1G18870). O.I. C.G. H.G.
31.8 99.7 19.3 At2g36470 818221 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFMO O.I. C.G. H.G.
31.5 99.7 46.0 At1g35210 840410 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO O.I. C.G. H.G.
31.4 99.7 21.2 At4g22980 828397 - F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PMFOBA O.I. C.G. H.G.
31.1 99.7 43.3 At1g77810 844443 galactosyltransferase family protein F:transferase activity, transferring glycosyl groups, beta-1,3-galactosyltransferase activity;P:protein amino acid glycosylation;C:Golgi apparatus;MPOB O.I. C.G. H.G.
30.8 99.7 121.8 At3g01830 820033 calmodulin-related protein, putative F:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;MPFOB O.I. C.G. H.G.
30.2 99.7 32.3 At3g16700 820922 fumarylacetoacetate hydrolase family protein F:catalytic activity;P:metabolic process;C:cellular_component unknown;BOFMAP O.I. C.G. H.G.
30.1 99.7 24.0 At1g17610 838337 disease resistance protein-related F:transmembrane receptor activity, ATP binding;P:signal transduction, apoptosis, innate immune response;C:intrinsic to membrane, endomembrane system;PBOMF O.I. C.G. H.G.
29.9 99.7 28.6 At1g62840 842584 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
29.8 99.7 27.0 At1g72280 843560 AERO1 (Arabidopsis endoplasmic reticulum oxidoreductins 1) endoplasmic reticulum oxidoreductin O.I. C.G. H.G.
29.3 99.7 36.9 At2g25190 817057 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;MPOF O.I. C.G. H.G.
29.1 99.7 74.9 At3g22160 821780 VQ motif-containing protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;POMFBV O.I. C.G. H.G.
28.8 99.7 193.8 At3g56710 824838 SIB1 (SIGMA FACTOR BINDING PROTEIN 1) Sig1 binding protein; interacts with Sig1R4. As well as Sig1, SibI is imported into chloroplasts and its expression is light-dependent in mature chloroplasts. O.I. C.G. H.G.
28.2 99.7 81.9 At3g13950 820608 unknown protein F:molecular_function unknown;P:unknown;C:unknown;P O.I. C.G. H.G.
28.1 99.7 106.0 At1g67810 843107 SUFE2 (SULFUR E 2) Encodes a protein capable of stimulating the cysteine desulfurase activity of CpNifS (AT1G08490) in vitro. SufE2:GFP localizes to the chloroplasts where it is likely to play a role in iron-sulfur cluster assembly. Transcript levels for this gene are high in the pollen relative to other organs based on RT-PCR analysis. O.I. C.G. H.G.
28.1 99.7 14.7 At4g29050 829026 lectin protein kinase family protein F:carbohydrate binding, kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
27.4 99.7 98.1 At4g18880 827622 AT-HSFA4A member of Heat Stress Transcription Factor (Hsf) family O.I. C.G. H.G.
27.4 99.7 83.6 At1g21525 3766777 - pseudogene of unknown protein O.I. C.G. H.G.
27.2 99.7 37.1 At3g09020 820054 alpha 1,4-glycosyltransferase family protein / glycosyltransferase sugar-binding DXD motif-containing protein F:transferase activity, transferring glycosyl groups, transferase activity;P:biological_process unknown;C:Golgi stack;MPOB O.I. C.G. H.G.
27.0 99.7 143.6 At4g35180 829671 LHT7 (Lys/His transporter 7) F:amino acid transmembrane transporter activity;P:amino acid transport;C:membrane;PFMOB O.I. C.G. H.G.
26.1 99.7 89.6 At1g72900 843621 disease resistance protein (TIR-NBS class), putative F:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;PBMO O.I. C.G. H.G.
25.4 99.6 34.6 At2g42950 818896 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPO O.I. C.G. H.G.
24.9 99.6 169.2 At3g18250 821353 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBMFO O.I. C.G. H.G.
24.4 99.6 39.2 At5g22380 832299 anac090 (Arabidopsis NAC domain containing protein 90) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P O.I. C.G. H.G.
24.3 99.6 147.3 At2g03760 814903 ST Encodes a brassinosteroid sulfotransferase. In vitro experiements show that this enzyme has a preference for 24-epibrassinosteroids, particularly 24-epicathasterone, but does not act on castasterone and brassinolide. It is differentially expressed during development, being more abundant in young seedlings and actively growing cell cultures. Expression is induced in response to salicylic acid and methyl jasmonate and bacterial pathogens. O.I. C.G. H.G.
23.6 99.6 43.9 At5g67450 836881 AZF1 (ARABIDOPSIS ZINC-FINGER PROTEIN 1) Encodes zinc-finger protein. mRNA levels are elevated in response to low temperature, cold temperatures and high salt. The protein is localized to the nucleus and acts as a transcriptional repressor. O.I. C.G. H.G.
23.1 99.6 29.0 At2g13810 815864 ALD1 (AGD2-LIKE DEFENSE RESPONSE PROTEIN1) F:transferase activity, transferring nitrogenous groups, pyridoxal phosphate binding, transaminase activity, catalytic activity;P:asparagine catabolic process, biosynthetic process, glutamate catabolic process to oxaloacetate, aspartate transamidation;C:chloroplast;BOAPMF O.I. C.G. H.G.
22.6 99.6 66.3 At3g28930 822529 AIG2 (AVRRPT2-INDUCED GENE 2) avrRpt2-induced gene that exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae pv maculicola strain ES4326 carrying avrRpt2 O.I. C.G. H.G.
22.6 99.6 56.2 At1g30040 839883 ATGA2OX2 (GIBBERELLIN 2-OXIDASE) Encodes a gibberellin 2-oxidase. AtGA2OX2 expression is responsive to cytokinin and KNOX activities. O.I. C.G. H.G.
22.4 99.6 77.3 At1g14200 837980 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVB O.I. C.G. H.G.
22.4 99.6 32.2 At5g22540 832315 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
21.7 99.6 26.7 At2g04430 814983 atnudt5 (Arabidopsis thaliana Nudix hydrolase homolog 5) F:hydrolase activity;P:unknown;C:cytosol;BOMPAFV O.I. C.G. H.G.
21.5 99.6 46.4 At4g04540 825785 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
21.3 99.6 56.4 At2g38790 818461 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
21.2 99.6 160.3 At2g18660 816381 EXLB3 (EXPANSIN-LIKE B3 PRECURSOR) Encodes PNP-A (Plant Natriuretic Peptide A). PNPs are a class of systemically mobile molecules distantly related to expansins; their biological role has remained elusive. PNP-A contains a signal peptide domain and is secreted into the extracellular space. Co-expression analyses using microarray data suggest that PNP-A may function as a component of plant defence response and SAR in particular, and could be classified as a newly identified PR protein. O.I. C.G. H.G.
21.0 99.6 55.9 At5g47730 834824 SEC14 cytosolic factor, putative / polyphosphoinositide-binding protein, putative F:transporter activity, binding;P:transport;C:cellular_component unknown;MPFO O.I. C.G. H.G.
20.8 99.6 65.4 At2g18680 816383 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PBO O.I. C.G. H.G.
20.7 99.6 102.7 At1g56060 842057 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PF O.I. C.G. H.G.
20.5 99.6 91.2 At1g22070 838812 TGA3 Encodes a transcription factor. Like other TGAla-related factors, TGA3 has a highly conserved bZIP region and exhibits similar DNA-binding properties. O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
460.0	100.0	113.7	At5g55420	835635	-	Encodes a Protease inhibitor/seed storage/LTP family protein [pseudogene]	O.I.	C.G.	H.G.
361.6	100.0	246.8	At2g45760	819184	BAP2 (BON ASSOCIATION PROTEIN 2)	encodes a protein that is similar to BONZAI1-binding protein BAP1.	O.I.	C.G.	H.G.
221.5	100.0	69.1	At5g22530	832314	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
187.7	100.0	199.5	At1g02450	837800	NIMIN1 (NIM1-INTERACTING 1)	NIMIN1 modulates PR gene expression according the following model: NPR1 forms a ternary complex with NIMIN1 and TGA factors upon SAR induction that binds to a positive regulatory cis-element of the PR-1 promoter, termed LS7. This leads to PR-1 gene induction. NIMIN1 decreases transcriptional activation, possibly through its EAR motif, which results in fine-tuning of PR-1 gene expression.	O.I.	C.G.	H.G.
178.9	100.0	108.9	At1g78410	844177	VQ motif-containing protein	F:molecular_function unknown;P:response to oxidative stress;C:cellular_component unknown;P	O.I.	C.G.	H.G.
130.4	99.9	57.0	At5g24540	832525	BGLU31 (BETA GLUCOSIDASE 31)	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:response to other organism;C:endomembrane system;BOPMFA	O.I.	C.G.	H.G.
130.0	99.9	103.9	At5g44570	834484	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
118.0	99.9	62.7	At4g11370	826739	RHA1A	Encodes a putative RING-H2 finger protein RHA1a.	O.I.	C.G.	H.G.
110.8	99.9	48.7	At1g57560	842131	AtMYB50 (myb domain protein 50)	Member of the R2R3 factor gene family.	O.I.	C.G.	H.G.
96.0	99.9	178.5	At4g39030	830058	EDS5 (ENHANCED DISEASE SUSCEPTIBILITY 5)	Encodes an orphan multidrug and toxin extrusion transporter. Essential component of salicylic acid-dependent signaling for disease resistance. Member of the MATE-transporter family. Expression induced by salicylic acid. Mutants are salicylic acid-deficient.	O.I.	C.G.	H.G.
89.3	99.9	145.2	At5g52810	835358	ornithine cyclodeaminase/mu-crystallin family protein	F:structural constituent of eye lens, binding, catalytic activity;P:arginine catabolic process to glutamate, nopaline catabolic process, metabolic process, octopine catabolic process;C:chloroplast;BOMAFP	O.I.	C.G.	H.G.
80.3	99.9	89.1	At2g47130	819326	short-chain dehydrogenase/reductase (SDR) family protein	F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAV	O.I.	C.G.	H.G.
78.9	99.9	85.3	At3g52430	824408	PAD4 (PHYTOALEXIN DEFICIENT 4)	Encodes a lipase-like gene that is important for salicylic acid signaling and function in resistance (R) gene-mediated and basal plant disease resistance. PAD4 can interact directly with EDS1, another disease resistance signaling protein. Expressed at elevated level in response to green peach aphid (GPA) feeding, and modulates the GPA feeding-induced leaf senescence through a mechanism that doesn't require camalexin synthesis and salicylic acid (SA) signaling.	O.I.	C.G.	H.G.
75.9	99.9	88.8	At1g73805	843716	calmodulin binding	F:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
73.8	99.9	41.6	At4g18250	827551	receptor serine/threonine kinase, putative	F:transmembrane receptor protein serine/threonine kinase activity, kinase activity;P:protein amino acid phosphorylation;C:unknown;MPOBFVA	O.I.	C.G.	H.G.
73.5	99.9	243.4	At2g40750	818670	WRKY54	member of WRKY Transcription Factor; Group III	O.I.	C.G.	H.G.
65.3	99.8	111.6	At1g01560	839523	ATMPK11	member of MAP Kinase	O.I.	C.G.	H.G.
65.2	99.8	150.6	At5g13320	831173	PBS3 (AVRPPHB SUSCEPTIBLE 3)	Encodes PBS3 (avrPphB susceptible), also known as GDG1 (GH3-Like Defense Gene 1)， WIN3 (HopW1-1-Interacting 3). Involved in disease-resistance signaling pathway. Required for accumulation of salicylic acid, activation of defense responses and resistance to Pseudomonas syringae. Expression detected in cotyledons, true leaves, hypocotyls and occasionally in some parts of roots from 10-day-old seedlings. No expression was detected in root, stem, rosette or cauline leaves of mature 4- to 5-week-old plants.	O.I.	C.G.	H.G.
60.5	99.8	53.5	At1g51920	841620	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
56.7	99.8	147.2	At1g73800		-	-	O.I.	C.G.	H.G.
53.3	99.8	59.6	At3g09010	820053	protein kinase family protein	F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA	O.I.	C.G.	H.G.
51.6	99.8	69.9	At3g21080	821660	ABC transporter-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
50.2	99.8	171.1	At2g46400	819248	WRKY46	member of WRKY Transcription Factor; Group III	O.I.	C.G.	H.G.
49.7	99.8	219.8	At5g52760	835353	heavy-metal-associated domain-containing protein	F:metal ion binding;P:metal ion transport;C:cellular_component unknown;P	O.I.	C.G.	H.G.
48.1	99.8	65.7	At1g56150	842068	auxin-responsive family protein	F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO	O.I.	C.G.	H.G.
47.5	99.8	97.9	At3g21520	821706	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
46.7	99.8	17.3	At3g57950	824964	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
46.5	99.8	40.8	At4g23610	828461	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
43.0	99.8	77.9	At1g34750	840379	protein phosphatase 2C, putative / PP2C, putative	F:protein serine/threonine phosphatase activity, catalytic activity;P:biological_process unknown;C:plasma membrane;PMOBFVA	O.I.	C.G.	H.G.
42.9	99.8	124.2	At1g13470	837907	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
42.9	99.8	29.4	At5g62770	836398	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;PMOF	O.I.	C.G.	H.G.
42.3	99.8	158.3	At3g47540	823908	chitinase, putative	F:chitinase activity;P:cell wall macromolecule catabolic process;C:endomembrane system;PBMOF	O.I.	C.G.	H.G.
41.6	99.8	15.0	At5g66890	836823	disease resistance protein (CC-NBS-LRR class), putative	F:unknown;P:defense response;C:unknown;PMBOFAV	O.I.	C.G.	H.G.
40.4	99.8	72.2	At5g56340	835734	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVB	O.I.	C.G.	H.G.
40.2	99.8	75.5	At1g66090	842923	disease resistance protein (TIR-NBS class), putative	F:transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane, chloroplast;PBOMF	O.I.	C.G.	H.G.
39.7	99.8	34.4	At5g43910	834413	pfkB-type carbohydrate kinase family protein	F:kinase activity, ribokinase activity;P:D-ribose metabolic process;C:cellular_component unknown;BOMPAF	O.I.	C.G.	H.G.
39.2	99.8	67.2	At1g51660	841591	ATMKK4 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 4)	Encodes a mitogen-activated map kinase kinase (there are nine in Arabidopsis) involved in innate immunity. This protein activates MPK3/MPK6 and early-defense genes redundantly with MKK5. In plants with both MKK5 and MKK6 levels reduced by RNAi plants, floral organs do not abscise suggestion a role for both proteins in mediating floral organ abscission.	O.I.	C.G.	H.G.
38.1	99.8	242.0	At3g60420	825213	-	F:unknown;P:unknown;C:cellular_component unknown;OBFPM	O.I.	C.G.	H.G.
38.0	99.8	148.1	At2g04450	814985	ATNUDT6 (Arabidopsis thaliana Nudix hydrolase homolog 6)	F:ADP-ribose diphosphatase activity, hydrolase activity, NAD or NADH binding;P:response to other organism;C:cytosol;OBMPAFV	O.I.	C.G.	H.G.
38.0	99.8	51.0	At1g23840	838995	unknown protein	F:unknown;P:unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
37.8	99.8	55.1	At2g23680	816899	stress-responsive protein, putative	F:molecular_function unknown;P:response to stress;C:membrane;P	O.I.	C.G.	H.G.
37.6	99.7	89.2	At5g47070	834753	protein kinase, putative	F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA	O.I.	C.G.	H.G.
37.5	99.7	65.6	At3g48090	823964	EDS1 (enhanced disease susceptibility 1)	Component of R gene-mediated disease resistance in Arabidopsis thaliana with homology to eukaryotic lipases.	O.I.	C.G.	H.G.
37.1	99.7	91.0	At1g02270	839381	endonuclease/exonuclease/phosphatase family protein / calcium-binding EF hand family protein	F:catalytic activity, calcium ion binding;P:response to cold;C:nucleus;MPOF	O.I.	C.G.	H.G.
36.4	99.7	56.2	At2g23480	816880	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
36.1	99.7	63.9	At5g25250	832596	-	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane, vacuole;BOMFPAV	O.I.	C.G.	H.G.
36.0	99.7	71.1	At3g50920	824256	phosphatidic acid phosphatase-related / PAP2-related	F:catalytic activity;P:biological_process unknown;C:chloroplast, membrane;MFPOB	O.I.	C.G.	H.G.
35.8	99.7	6.2	At4g05030	825845	heavy-metal-associated domain-containing protein	F:metal ion binding;P:metal ion transport;C:mitochondrion;P	O.I.	C.G.	H.G.
35.7	99.7	39.5	At4g04490	825779	protein kinase family protein	F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
35.6	99.7	101.2	At5g39670	833963	calcium-binding EF hand family protein	F:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;MPFOB	O.I.	C.G.	H.G.
35.5	99.7	105.4	At5g51830	835258	pfkB-type carbohydrate kinase family protein	F:kinase activity, ribokinase activity;P:response to cadmium ion;C:cellular_component unknown;BOPAMF	O.I.	C.G.	H.G.
35.2	99.7	99.5	At5g22570	832320	WRKY38	member of WRKY Transcription Factor; Group III	O.I.	C.G.	H.G.
34.5	99.7	78.5	At1g23850	838996	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
34.2	99.7	54.2	At4g03450	827913	ankyrin repeat family protein	F:protein binding;P:unknown;C:unknown;MOPFBVA	O.I.	C.G.	H.G.
33.9	99.7	109.8	At3g26210	822222	CYP71B23	putative cytochrome P450	O.I.	C.G.	H.G.
33.5	99.7	59.5	At4g22530	828348	embryo-abundant protein-related	F:methyltransferase activity;P:metabolic process;C:cellular_component unknown;BPFMOA	O.I.	C.G.	H.G.
33.4	99.7	62.9	At3g55470	824713	C2 domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOF	O.I.	C.G.	H.G.
33.3	99.7	219.2	At3g48640	824024	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
33.3	99.7	27.4	At3g24090	821995	glutamine-fructose-6-phosphate transaminase (isomerizing)/ sugar binding / transaminase	F:sugar binding, transaminase activity, glutamine-fructose-6-phosphate transaminase (isomerizing) activity;P:carbohydrate biosynthetic process, carbohydrate metabolic process, metabolic process;C:cytoplasm;OBMAFPV	O.I.	C.G.	H.G.
32.9	99.7	123.5	At1g57630	842139	disease resistance protein (TIR class), putative	F:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;P	O.I.	C.G.	H.G.
32.6	99.7	32.1	At1g33720	840263	CYP76C6	member of CYP76C	O.I.	C.G.	H.G.
31.8	99.7	99.0	At1g74710	843810	isochorismate synthase 1 (ICS1) / isochorismate mutase	Encodes a protein with isochorismate synthase activity. Mutants fail to accumulate salicylic acid. Its function may be redundant with that of ICS2 (AT1G18870).	O.I.	C.G.	H.G.
31.8	99.7	19.3	At2g36470	818221	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFMO	O.I.	C.G.	H.G.
31.5	99.7	46.0	At1g35210	840410	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO	O.I.	C.G.	H.G.
31.4	99.7	21.2	At4g22980	828397	-	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PMFOBA	O.I.	C.G.	H.G.
31.1	99.7	43.3	At1g77810	844443	galactosyltransferase family protein	F:transferase activity, transferring glycosyl groups, beta-1,3-galactosyltransferase activity;P:protein amino acid glycosylation;C:Golgi apparatus;MPOB	O.I.	C.G.	H.G.
30.8	99.7	121.8	At3g01830	820033	calmodulin-related protein, putative	F:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;MPFOB	O.I.	C.G.	H.G.
30.2	99.7	32.3	At3g16700	820922	fumarylacetoacetate hydrolase family protein	F:catalytic activity;P:metabolic process;C:cellular_component unknown;BOFMAP	O.I.	C.G.	H.G.
30.1	99.7	24.0	At1g17610	838337	disease resistance protein-related	F:transmembrane receptor activity, ATP binding;P:signal transduction, apoptosis, innate immune response;C:intrinsic to membrane, endomembrane system;PBOMF	O.I.	C.G.	H.G.
29.9	99.7	28.6	At1g62840	842584	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
29.8	99.7	27.0	At1g72280	843560	AERO1 (Arabidopsis endoplasmic reticulum oxidoreductins 1)	endoplasmic reticulum oxidoreductin	O.I.	C.G.	H.G.
29.3	99.7	36.9	At2g25190	817057	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;MPOF	O.I.	C.G.	H.G.
29.1	99.7	74.9	At3g22160	821780	VQ motif-containing protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;POMFBV	O.I.	C.G.	H.G.
28.8	99.7	193.8	At3g56710	824838	SIB1 (SIGMA FACTOR BINDING PROTEIN 1)	Sig1 binding protein; interacts with Sig1R4. As well as Sig1, SibI is imported into chloroplasts and its expression is light-dependent in mature chloroplasts.	O.I.	C.G.	H.G.
28.2	99.7	81.9	At3g13950	820608	unknown protein	F:molecular_function unknown;P:unknown;C:unknown;P	O.I.	C.G.	H.G.
28.1	99.7	106.0	At1g67810	843107	SUFE2 (SULFUR E 2)	Encodes a protein capable of stimulating the cysteine desulfurase activity of CpNifS (AT1G08490) in vitro. SufE2:GFP localizes to the chloroplasts where it is likely to play a role in iron-sulfur cluster assembly. Transcript levels for this gene are high in the pollen relative to other organs based on RT-PCR analysis.	O.I.	C.G.	H.G.
28.1	99.7	14.7	At4g29050	829026	lectin protein kinase family protein	F:carbohydrate binding, kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
27.4	99.7	98.1	At4g18880	827622	AT-HSFA4A	member of Heat Stress Transcription Factor (Hsf) family	O.I.	C.G.	H.G.
27.4	99.7	83.6	At1g21525	3766777	-	pseudogene of unknown protein	O.I.	C.G.	H.G.
27.2	99.7	37.1	At3g09020	820054	alpha 1,4-glycosyltransferase family protein / glycosyltransferase sugar-binding DXD motif-containing protein	F:transferase activity, transferring glycosyl groups, transferase activity;P:biological_process unknown;C:Golgi stack;MPOB	O.I.	C.G.	H.G.
27.0	99.7	143.6	At4g35180	829671	LHT7 (Lys/His transporter 7)	F:amino acid transmembrane transporter activity;P:amino acid transport;C:membrane;PFMOB	O.I.	C.G.	H.G.
26.1	99.7	89.6	At1g72900	843621	disease resistance protein (TIR-NBS class), putative	F:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;PBMO	O.I.	C.G.	H.G.
25.4	99.6	34.6	At2g42950	818896	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPO	O.I.	C.G.	H.G.
24.9	99.6	169.2	At3g18250	821353	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBMFO	O.I.	C.G.	H.G.
24.4	99.6	39.2	At5g22380	832299	anac090 (Arabidopsis NAC domain containing protein 90)	F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P	O.I.	C.G.	H.G.
24.3	99.6	147.3	At2g03760	814903	ST	Encodes a brassinosteroid sulfotransferase. In vitro experiements show that this enzyme has a preference for 24-epibrassinosteroids, particularly 24-epicathasterone, but does not act on castasterone and brassinolide. It is differentially expressed during development, being more abundant in young seedlings and actively growing cell cultures. Expression is induced in response to salicylic acid and methyl jasmonate and bacterial pathogens.	O.I.	C.G.	H.G.
23.6	99.6	43.9	At5g67450	836881	AZF1 (ARABIDOPSIS ZINC-FINGER PROTEIN 1)	Encodes zinc-finger protein. mRNA levels are elevated in response to low temperature, cold temperatures and high salt. The protein is localized to the nucleus and acts as a transcriptional repressor.	O.I.	C.G.	H.G.
23.1	99.6	29.0	At2g13810	815864	ALD1 (AGD2-LIKE DEFENSE RESPONSE PROTEIN1)	F:transferase activity, transferring nitrogenous groups, pyridoxal phosphate binding, transaminase activity, catalytic activity;P:asparagine catabolic process, biosynthetic process, glutamate catabolic process to oxaloacetate, aspartate transamidation;C:chloroplast;BOAPMF	O.I.	C.G.	H.G.
22.6	99.6	66.3	At3g28930	822529	AIG2 (AVRRPT2-INDUCED GENE 2)	avrRpt2-induced gene that exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae pv maculicola strain ES4326 carrying avrRpt2	O.I.	C.G.	H.G.
22.6	99.6	56.2	At1g30040	839883	ATGA2OX2 (GIBBERELLIN 2-OXIDASE)	Encodes a gibberellin 2-oxidase. AtGA2OX2 expression is responsive to cytokinin and KNOX activities.	O.I.	C.G.	H.G.
22.4	99.6	77.3	At1g14200	837980	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVB	O.I.	C.G.	H.G.
22.4	99.6	32.2	At5g22540	832315	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
21.7	99.6	26.7	At2g04430	814983	atnudt5 (Arabidopsis thaliana Nudix hydrolase homolog 5)	F:hydrolase activity;P:unknown;C:cytosol;BOMPAFV	O.I.	C.G.	H.G.
21.5	99.6	46.4	At4g04540	825785	protein kinase family protein	F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
21.3	99.6	56.4	At2g38790	818461	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
21.2	99.6	160.3	At2g18660	816381	EXLB3 (EXPANSIN-LIKE B3 PRECURSOR)	Encodes PNP-A (Plant Natriuretic Peptide A). PNPs are a class of systemically mobile molecules distantly related to expansins; their biological role has remained elusive. PNP-A contains a signal peptide domain and is secreted into the extracellular space. Co-expression analyses using microarray data suggest that PNP-A may function as a component of plant defence response and SAR in particular, and could be classified as a newly identified PR protein.	O.I.	C.G.	H.G.
21.0	99.6	55.9	At5g47730	834824	SEC14 cytosolic factor, putative / polyphosphoinositide-binding protein, putative	F:transporter activity, binding;P:transport;C:cellular_component unknown;MPFO	O.I.	C.G.	H.G.
20.8	99.6	65.4	At2g18680	816383	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PBO	O.I.	C.G.	H.G.
20.7	99.6	102.7	At1g56060	842057	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PF	O.I.	C.G.	H.G.
20.5	99.6	91.2	At1g22070	838812	TGA3	Encodes a transcription factor. Like other TGAla-related factors, TGA3 has a highly conserved bZIP region and exhibits similar DNA-binding properties.	O.I.	C.G.	H.G.

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GSM ID	GSM134457
Assay name	St.Clair_1-82_294_Mt-0_0.30mM-SA-in-0.02%-silwet_Rep1_ATH1
GSE experiment	GSE5758: Expression Level Polymorphism Project (ELP) - Mt-0

Microarray experiments to specifically-expressed genes

GSM ID GSM134457 Assay name St.Clair_1-82_294_Mt-0_0.30mM-SA-in-0.02%-silwet_Rep1_ATH1 GSE experiment GSE5758: Expression Level Polymorphism Project (ELP) - Mt-0

GSM ID GSM134457

Assay name St.Clair_1-82_294_Mt-0_0.30mM-SA-in-0.02%-silwet_Rep1_ATH1

GSE experiment GSE5758: Expression Level Polymorphism Project (ELP) - Mt-0