CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM134448

Assay name St.Clair_1-73_291_Mt-0_0.02%-silwet_Rep1_ATH1

GSE experiment GSE5758: Expression Level Polymorphism Project (ELP) - Mt-0

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
101.9 99.9 37.9 At5g04150 830293 BHLH101 F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMOVBF O.I. C.G. H.G.
95.8 99.9 77.4 At1g78450 844181 SOUL heme-binding family protein F:binding;P:biological_process unknown;C:endomembrane system;OMPBA O.I. C.G. H.G.
71.9 99.9 199.3 At1g47400 841144 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
55.7 99.8 166.2 At1g30250 839905 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
46.6 99.8 85.1 At5g05250 830407 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
42.1 99.8 138.2 At1g30260 839906 - F:molecular_function unknown;P:response to cytokinin stimulus;C:unknown;P O.I. C.G. H.G.
40.6 99.8 36.8 At4g11370 826739 RHA1A Encodes a putative RING-H2 finger protein RHA1a. O.I. C.G. H.G.
32.8 99.7 143.9 At5g43450 834365 2-oxoglutarate-dependent dioxygenase, putative encodes a protein whose sequence is similar to ACC oxidase O.I. C.G. H.G.
31.4 99.7 115.9 At2g21530 816692 forkhead-associated domain-containing protein / FHA domain-containing protein F:unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast stroma, chloroplast;BPOAM O.I. C.G. H.G.
29.7 99.7 57.9 At1g07050 837216 CONSTANS-like protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POF O.I. C.G. H.G.
25.9 99.7 95.6 At5g42900 834301 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
25.8 99.7 69.3 At2g39920 818579 acid phosphatase class B family protein F:acid phosphatase activity;P:response to cadmium ion;C:cellular_component unknown;PBO O.I. C.G. H.G.
24.0 99.6 59.7 At3g56980 824865 BHLH039 F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMF O.I. C.G. H.G.
23.0 99.6 143.1 At2g03760 814903 ST Encodes a brassinosteroid sulfotransferase. In vitro experiements show that this enzyme has a preference for 24-epibrassinosteroids, particularly 24-epicathasterone, but does not act on castasterone and brassinolide. It is differentially expressed during development, being more abundant in young seedlings and actively growing cell cultures. Expression is induced in response to salicylic acid and methyl jasmonate and bacterial pathogens. O.I. C.G. H.G.
22.7 99.6 71.0 At1g56430 842096 NAS4 (NICOTIANAMINE SYNTHASE 4) F:nicotianamine synthase activity;P:nicotianamine biosynthetic process;C:cellular_component unknown;PFABO O.I. C.G. H.G.
20.4 99.6 98.4 At2g40080 818596 ELF4 (EARLY FLOWERING 4) Encodes a novel nuclear 111 amino-acid phytochrome-regulated component of a negative feedback loop involving the circadian clock central oscillator components CCA1 and LHY. ELF4 is necessary for light-induced expression of both CCA1 and LHY, and conversely, CCA1 and LHY act negatively on light-induced ELF4 expression. ELF4 promotes clock accuracy and is required for sustained rhythms in the absence of daily light/dark cycles. It is involved in the phyB-mediated constant red light induced seedling de-etiolation process and may function to coregulate the expression of a subset of phyB-regulated genes. O.I. C.G. H.G.
19.4 99.6 54.0 At1g31690 840056 amine oxidase/ copper ion binding / quinone binding F:quinone binding, amine oxidase activity, copper ion binding;P:cellular amine metabolic process;C:endomembrane system;FBMOPA O.I. C.G. H.G.
17.3 99.5 22.1 At5g55420 835635 - Encodes a Protease inhibitor/seed storage/LTP family protein [pseudogene] O.I. C.G. H.G.
17.0 99.5 52.5 At5g11150 830984 ATVAMP713 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 713) Member of Synaptobrevin-like AtVAMP7C, v-SNARE protein family. O.I. C.G. H.G.
16.3 99.5 38.3 At1g56150 842068 auxin-responsive family protein F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO O.I. C.G. H.G.
15.8 99.5 21.0 At5g43800 3771423 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
15.6 99.5 49.5 At4g03150 828059 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BP O.I. C.G. H.G.
15.2 99.4 57.6 At3g46900 823843 COPT2 encodes a member of copper transporter family and functionally complements a high affinity copper transporter mutant in yeast O.I. C.G. H.G.
14.7 99.4 108.8 At2g40750 818670 WRKY54 member of WRKY Transcription Factor; Group III O.I. C.G. H.G.
14.6 99.4 132.5 At5g61660 836288 glycine-rich protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BMOPFVA O.I. C.G. H.G.
14.4 99.4 37.4 At2g47880 819400 glutaredoxin family protein F:electron carrier activity, arsenate reductase (glutaredoxin) activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:endomembrane system;PMFBO O.I. C.G. H.G.
14.3 99.4 152.6 At3g28220 822448 meprin and TRAF homology domain-containing protein / MATH domain-containing protein F:molecular_function unknown;P:response to salt stress;C:vacuole, chloroplast envelope;PMO O.I. C.G. H.G.
14.2 99.4 89.2 At1g52410 841671 TSA1 (TSK-ASSOCIATING PROTEIN 1) Contains a novel calcium-binding repeat sequence. Binds TSK in vitro. Localizes to small cytoplasmic vesicles in interphase cells. In cells synchronized for cell division, TSA1 and TSK relocalize to ends of spindle microtubules that are ahead of separating chromatids during metaphase and anaphase of mitosis. May be involved in mitosis together with TSK. Expressed preferentially in the flower and shoot apex. Can form multimers. O.I. C.G. H.G.
13.9 99.4 36.8 At3g01660 821098 methyltransferase F:methyltransferase activity;P:metabolic process;C:cellular_component unknown;BOPMAF O.I. C.G. H.G.
13.8 99.4 42.7 At3g61630 825336 CRF6 (CYTOKININ RESPONSE FACTOR 6) CRF6 encodes one of the six cytokinin response factors. CRF5 belongs to the AP2/ERF superfamily of the transcriptional factors. CRF proteins rapidly relocalize to the nucleus in response to cytokinin. Analysis of loos-of-function mutants revealed that the CRFs function redundantly to regulate the development of embryos, cotyledons and leaves. O.I. C.G. H.G.
13.7 99.4 242.2 At2g42530 818853 COR15B (COLD REGULATED 15B) F:unknown;P:response to cold;C:chloroplast, chloroplast stroma, chloroplast envelope;PBOMF O.I. C.G. H.G.
13.7 99.4 31.8 At3g44070 823525 beta-galactosidase F:beta-galactosidase activity;P:carbohydrate metabolic process;C:beta-galactosidase complex;P O.I. C.G. H.G.
13.2 99.4 157.4 At2g41730 818772 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
13.0 99.4 42.1 At3g52070 824370 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
12.9 99.3 48.1 At5g39210 833917 CRR7 (CHLORORESPIRATORY REDUCTION 7) Encodes a protein of the chloroplastic NAD(P)H dehydrogenase complex (NDH Complex) involved in respiration, photosystem I (PSI) cyclic electron transport and CO2 uptake. The product of this gene appears to be essential for the stable formation of the NDH Complex. O.I. C.G. H.G.
12.8 99.3 59.1 At2g21640 816702 - Encodes a protein of unknown function that is a marker for oxidative stress response. O.I. C.G. H.G.
12.7 99.3 43.0 At1g24575 839072 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
12.7 99.3 37.2 At5g20935 832218 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;BPO O.I. C.G. H.G.
12.7 99.3 19.5 At1g18710 838453 AtMYB47 (myb domain protein 47) Member of the R2R3 factor gene family. O.I. C.G. H.G.
12.5 99.3 35.5 At1g65420 842853 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO O.I. C.G. H.G.
12.2 99.3 126.5 At5g23240 832388 DNAJ heat shock N-terminal domain-containing protein F:unfolded protein binding, heat shock protein binding;P:protein folding;C:chloroplast;BOMPFAV O.I. C.G. H.G.
12.2 99.3 36.0 At4g33980 829544 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFMO O.I. C.G. H.G.
11.9 99.3 37.1 At1g74440 843785 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BFOP O.I. C.G. H.G.
11.8 99.3 122.9 At5g53450 835426 ORG1 (OBP3-responsive gene 1) F:protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast;PMOFB O.I. C.G. H.G.
11.8 99.3 55.6 At3g01440 821143 oxygen evolving enhancer 3 (PsbQ) family protein F:calcium ion binding;P:photosynthesis, light reaction;C:chloroplast thylakoid membrane, chloroplast photosystem II, chloroplast thylakoid lumen, chloroplast, oxygen evolving complex;P O.I. C.G. H.G.
11.4 99.3 38.6 At3g11090 820280 LBD21 (LOB DOMAIN-CONTAINING PROTEIN 21) F:unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
11.2 99.2 12.5 At2g29160 3768464 - F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
11.1 99.2 110.7 At4g04330 825753 unknown protein F:unknown;P:unknown;C:unknown;BPO O.I. C.G. H.G.
10.7 99.2 13.7 At1g31680 - - O.I. C.G. H.G.
10.6 99.2 83.6 At4g00895 827987 ATP synthase delta chain-related F:hydrogen ion transporting ATP synthase activity, rotational mechanism, proton-transporting ATPase activity, rotational mechanism;P:ATP synthesis coupled proton transport;C:proton-transporting ATP synthase complex, catalytic core F(1), chloroplast;PFMO O.I. C.G. H.G.
10.6 99.2 41.1 At4g37150 829869 MES9 (METHYL ESTERASE 9) Encodes a protein shown to have carboxylesterase activity, methyl salicylate esterase activity, methyl jasmonate esterase activity, and methyl IAA esterase activity in vitro. MES9 appears to be involved in MeSA hydrolysis in planta. Expression of MES9 can restore systemic acquired resistance in SAR-deficient tobacco plants. This protein does not act on MeGA4, or MEGA9 in vitro. O.I. C.G. H.G.
10.5 99.2 39.1 At2g03310 814860 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
10.3 99.2 60.6 At1g62430 842541 ATCDS1 Encodes a CDP-diacylglycerol synthase, involved in phospholipid biosynthesis. O.I. C.G. H.G.
10.3 99.2 36.9 At1g14230 837984 nucleoside phosphatase family protein / GDA1/CD39 family protein F:hydrolase activity;P:unknown;C:unknown;MFPOB O.I. C.G. H.G.
10.2 99.2 39.4 At1g66890 843007 - F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
10.2 99.2 38.0 At1g68585 843188 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
10.1 99.2 67.6 At2g06925 815261 PLA2-ALPHA Encodes a secretory phospholipase A2 enzyme, which specifically hydrolyzes the sn-2 position of phospholipids. The enzyme has a preference towards linoleoyl acyl chain over palmitoyl acyl chain. It also has a slight preference for phosphatidylcholine over phosphatidylethanolamine. O.I. C.G. H.G.
10.1 99.2 51.6 At3g15110 820741 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane;BPO O.I. C.G. H.G.
10.1 99.2 20.5 At5g59000 836017 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MOFPVBA O.I. C.G. H.G.
10.0 99.2 120.3 At5g62720 836393 integral membrane HPP family protein F:molecular_function unknown;P:biological_process unknown;C:integral to membrane, chloroplast inner membrane, chloroplast envelope;OBFP O.I. C.G. H.G.
10.0 99.2 84.5 At3g46630 823816 - F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PBO O.I. C.G. H.G.
10.0 99.2 30.1 At1g03660 839033 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
9.9 99.1 71.0 At2g28430 817391 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
9.9 99.1 45.4 At1g02300 839576 cathepsin B-like cysteine protease, putative F:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis, regulation of catalytic activity;C:endomembrane system;MOPVBAF O.I. C.G. H.G.
9.9 99.1 37.7 At3g46640 823817 PCL1 (PHYTOCLOCK 1) Encodes a myb family transcription factor with a single Myb DNA-binding domain (type SHAQKYF) that is unique to plants and is essential for circadian rhythms, specifically for transcriptional regulation within the circadian clock. LUX is required for normal rhythmic expression of multiple clock outputs in both constant light and darkness. It is coregulated with TOC1 and seems to be repressed by CCA1 and LHY by direct binding of these proteins to the evening element in the LUX promoter. O.I. C.G. H.G.
9.7 99.1 38.7 At1g53035 841737 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
9.7 99.1 24.0 At1g12710 837826 AtPP2-A12 (Phloem protein 2-A12) This gene is predicted to encode a protein with a PP2 domain. This domain in present in lectins found in squash and cucumber, suggesting that this protein could potentially have carbohydrate binding capabilities. O.I. C.G. H.G.
9.6 99.1 66.7 At5g06690 830558 WCRKC1 (WCRKC THIOREDOXIN 1) Encodes a thioredoxin (WCRKC1) localized in chloroplast stroma. Contains a WCRKC motif. O.I. C.G. H.G.
9.6 99.1 43.7 At2g35960 818169 NHL12 Encodes a protein whose sequence is similar to tobacco hairpin-induced gene (HIN1) and Arabidopsis non-race specific disease resistance gene (NDR1). Expression is not altered in response to cucumber mosaic virus or spermine. O.I. C.G. H.G.
9.3 99.1 82.7 At1g74520 843793 ATHVA22A Part of the AtHVA22a family. Protein expression is ABA- and stress-inducible. O.I. C.G. H.G.
9.1 99.1 82.3 At3g10520 820216 AHB2 (ARABIDOPSIS HAEMOGLOBIN 2) class 2 non-symbiotic hemoglobin O.I. C.G. H.G.
9.0 99.1 36.0 At1g78995 844240 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
9.0 99.1 15.9 At4g01130 828207 acetylesterase, putative F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOM O.I. C.G. H.G.
9.0 99.1 11.3 At5g25210 832592 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
8.8 99.0 46.6 At1g26800 839223 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV O.I. C.G. H.G.
8.8 99.0 41.5 At1g31940 840084 unknown protein F:unknown;P:unknown;C:plasma membrane;P O.I. C.G. H.G.
8.7 99.0 194.2 At3g22210 821785 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
8.7 99.0 30.7 At3g23880 821971 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:nucleus;PO O.I. C.G. H.G.
8.6 99.0 45.5 At5g62480 836368 ATGSTU9 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 9) Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). O.I. C.G. H.G.
8.6 99.0 21.9 At3g47640 823918 basic helix-loop-helix (bHLH) family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus, chloroplast;PMO O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
101.9	99.9	37.9	At5g04150	830293	BHLH101	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMOVBF	O.I.	C.G.	H.G.
95.8	99.9	77.4	At1g78450	844181	SOUL heme-binding family protein	F:binding;P:biological_process unknown;C:endomembrane system;OMPBA	O.I.	C.G.	H.G.
71.9	99.9	199.3	At1g47400	841144	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
55.7	99.8	166.2	At1g30250	839905	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
46.6	99.8	85.1	At5g05250	830407	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
42.1	99.8	138.2	At1g30260	839906	-	F:molecular_function unknown;P:response to cytokinin stimulus;C:unknown;P	O.I.	C.G.	H.G.
40.6	99.8	36.8	At4g11370	826739	RHA1A	Encodes a putative RING-H2 finger protein RHA1a.	O.I.	C.G.	H.G.
32.8	99.7	143.9	At5g43450	834365	2-oxoglutarate-dependent dioxygenase, putative	encodes a protein whose sequence is similar to ACC oxidase	O.I.	C.G.	H.G.
31.4	99.7	115.9	At2g21530	816692	forkhead-associated domain-containing protein / FHA domain-containing protein	F:unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast stroma, chloroplast;BPOAM	O.I.	C.G.	H.G.
29.7	99.7	57.9	At1g07050	837216	CONSTANS-like protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POF	O.I.	C.G.	H.G.
25.9	99.7	95.6	At5g42900	834301	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
25.8	99.7	69.3	At2g39920	818579	acid phosphatase class B family protein	F:acid phosphatase activity;P:response to cadmium ion;C:cellular_component unknown;PBO	O.I.	C.G.	H.G.
24.0	99.6	59.7	At3g56980	824865	BHLH039	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMF	O.I.	C.G.	H.G.
23.0	99.6	143.1	At2g03760	814903	ST	Encodes a brassinosteroid sulfotransferase. In vitro experiements show that this enzyme has a preference for 24-epibrassinosteroids, particularly 24-epicathasterone, but does not act on castasterone and brassinolide. It is differentially expressed during development, being more abundant in young seedlings and actively growing cell cultures. Expression is induced in response to salicylic acid and methyl jasmonate and bacterial pathogens.	O.I.	C.G.	H.G.
22.7	99.6	71.0	At1g56430	842096	NAS4 (NICOTIANAMINE SYNTHASE 4)	F:nicotianamine synthase activity;P:nicotianamine biosynthetic process;C:cellular_component unknown;PFABO	O.I.	C.G.	H.G.
20.4	99.6	98.4	At2g40080	818596	ELF4 (EARLY FLOWERING 4)	Encodes a novel nuclear 111 amino-acid phytochrome-regulated component of a negative feedback loop involving the circadian clock central oscillator components CCA1 and LHY. ELF4 is necessary for light-induced expression of both CCA1 and LHY, and conversely, CCA1 and LHY act negatively on light-induced ELF4 expression. ELF4 promotes clock accuracy and is required for sustained rhythms in the absence of daily light/dark cycles. It is involved in the phyB-mediated constant red light induced seedling de-etiolation process and may function to coregulate the expression of a subset of phyB-regulated genes.	O.I.	C.G.	H.G.
19.4	99.6	54.0	At1g31690	840056	amine oxidase/ copper ion binding / quinone binding	F:quinone binding, amine oxidase activity, copper ion binding;P:cellular amine metabolic process;C:endomembrane system;FBMOPA	O.I.	C.G.	H.G.
17.3	99.5	22.1	At5g55420	835635	-	Encodes a Protease inhibitor/seed storage/LTP family protein [pseudogene]	O.I.	C.G.	H.G.
17.0	99.5	52.5	At5g11150	830984	ATVAMP713 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 713)	Member of Synaptobrevin-like AtVAMP7C, v-SNARE protein family.	O.I.	C.G.	H.G.
16.3	99.5	38.3	At1g56150	842068	auxin-responsive family protein	F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO	O.I.	C.G.	H.G.
15.8	99.5	21.0	At5g43800	3771423	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
15.6	99.5	49.5	At4g03150	828059	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BP	O.I.	C.G.	H.G.
15.2	99.4	57.6	At3g46900	823843	COPT2	encodes a member of copper transporter family and functionally complements a high affinity copper transporter mutant in yeast	O.I.	C.G.	H.G.
14.7	99.4	108.8	At2g40750	818670	WRKY54	member of WRKY Transcription Factor; Group III	O.I.	C.G.	H.G.
14.6	99.4	132.5	At5g61660	836288	glycine-rich protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BMOPFVA	O.I.	C.G.	H.G.
14.4	99.4	37.4	At2g47880	819400	glutaredoxin family protein	F:electron carrier activity, arsenate reductase (glutaredoxin) activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:endomembrane system;PMFBO	O.I.	C.G.	H.G.
14.3	99.4	152.6	At3g28220	822448	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	F:molecular_function unknown;P:response to salt stress;C:vacuole, chloroplast envelope;PMO	O.I.	C.G.	H.G.
14.2	99.4	89.2	At1g52410	841671	TSA1 (TSK-ASSOCIATING PROTEIN 1)	Contains a novel calcium-binding repeat sequence. Binds TSK in vitro. Localizes to small cytoplasmic vesicles in interphase cells. In cells synchronized for cell division, TSA1 and TSK relocalize to ends of spindle microtubules that are ahead of separating chromatids during metaphase and anaphase of mitosis. May be involved in mitosis together with TSK. Expressed preferentially in the flower and shoot apex. Can form multimers.	O.I.	C.G.	H.G.
13.9	99.4	36.8	At3g01660	821098	methyltransferase	F:methyltransferase activity;P:metabolic process;C:cellular_component unknown;BOPMAF	O.I.	C.G.	H.G.
13.8	99.4	42.7	At3g61630	825336	CRF6 (CYTOKININ RESPONSE FACTOR 6)	CRF6 encodes one of the six cytokinin response factors. CRF5 belongs to the AP2/ERF superfamily of the transcriptional factors. CRF proteins rapidly relocalize to the nucleus in response to cytokinin. Analysis of loos-of-function mutants revealed that the CRFs function redundantly to regulate the development of embryos, cotyledons and leaves.	O.I.	C.G.	H.G.
13.7	99.4	242.2	At2g42530	818853	COR15B (COLD REGULATED 15B)	F:unknown;P:response to cold;C:chloroplast, chloroplast stroma, chloroplast envelope;PBOMF	O.I.	C.G.	H.G.
13.7	99.4	31.8	At3g44070	823525	beta-galactosidase	F:beta-galactosidase activity;P:carbohydrate metabolic process;C:beta-galactosidase complex;P	O.I.	C.G.	H.G.
13.2	99.4	157.4	At2g41730	818772	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
13.0	99.4	42.1	At3g52070	824370	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
12.9	99.3	48.1	At5g39210	833917	CRR7 (CHLORORESPIRATORY REDUCTION 7)	Encodes a protein of the chloroplastic NAD(P)H dehydrogenase complex (NDH Complex) involved in respiration, photosystem I (PSI) cyclic electron transport and CO2 uptake. The product of this gene appears to be essential for the stable formation of the NDH Complex.	O.I.	C.G.	H.G.
12.8	99.3	59.1	At2g21640	816702	-	Encodes a protein of unknown function that is a marker for oxidative stress response.	O.I.	C.G.	H.G.
12.7	99.3	43.0	At1g24575	839072	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
12.7	99.3	37.2	At5g20935	832218	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;BPO	O.I.	C.G.	H.G.
12.7	99.3	19.5	At1g18710	838453	AtMYB47 (myb domain protein 47)	Member of the R2R3 factor gene family.	O.I.	C.G.	H.G.
12.5	99.3	35.5	At1g65420	842853	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO	O.I.	C.G.	H.G.
12.2	99.3	126.5	At5g23240	832388	DNAJ heat shock N-terminal domain-containing protein	F:unfolded protein binding, heat shock protein binding;P:protein folding;C:chloroplast;BOMPFAV	O.I.	C.G.	H.G.
12.2	99.3	36.0	At4g33980	829544	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFMO	O.I.	C.G.	H.G.
11.9	99.3	37.1	At1g74440	843785	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BFOP	O.I.	C.G.	H.G.
11.8	99.3	122.9	At5g53450	835426	ORG1 (OBP3-responsive gene 1)	F:protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast;PMOFB	O.I.	C.G.	H.G.
11.8	99.3	55.6	At3g01440	821143	oxygen evolving enhancer 3 (PsbQ) family protein	F:calcium ion binding;P:photosynthesis, light reaction;C:chloroplast thylakoid membrane, chloroplast photosystem II, chloroplast thylakoid lumen, chloroplast, oxygen evolving complex;P	O.I.	C.G.	H.G.
11.4	99.3	38.6	At3g11090	820280	LBD21 (LOB DOMAIN-CONTAINING PROTEIN 21)	F:unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
11.2	99.2	12.5	At2g29160	3768464	-	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
11.1	99.2	110.7	At4g04330	825753	unknown protein	F:unknown;P:unknown;C:unknown;BPO	O.I.	C.G.	H.G.
10.7	99.2	13.7	At1g31680		-	-	O.I.	C.G.	H.G.
10.6	99.2	83.6	At4g00895	827987	ATP synthase delta chain-related	F:hydrogen ion transporting ATP synthase activity, rotational mechanism, proton-transporting ATPase activity, rotational mechanism;P:ATP synthesis coupled proton transport;C:proton-transporting ATP synthase complex, catalytic core F(1), chloroplast;PFMO	O.I.	C.G.	H.G.
10.6	99.2	41.1	At4g37150	829869	MES9 (METHYL ESTERASE 9)	Encodes a protein shown to have carboxylesterase activity, methyl salicylate esterase activity, methyl jasmonate esterase activity, and methyl IAA esterase activity in vitro. MES9 appears to be involved in MeSA hydrolysis in planta. Expression of MES9 can restore systemic acquired resistance in SAR-deficient tobacco plants. This protein does not act on MeGA4, or MEGA9 in vitro.	O.I.	C.G.	H.G.
10.5	99.2	39.1	At2g03310	814860	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
10.3	99.2	60.6	At1g62430	842541	ATCDS1	Encodes a CDP-diacylglycerol synthase, involved in phospholipid biosynthesis.	O.I.	C.G.	H.G.
10.3	99.2	36.9	At1g14230	837984	nucleoside phosphatase family protein / GDA1/CD39 family protein	F:hydrolase activity;P:unknown;C:unknown;MFPOB	O.I.	C.G.	H.G.
10.2	99.2	39.4	At1g66890	843007	-	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
10.2	99.2	38.0	At1g68585	843188	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
10.1	99.2	67.6	At2g06925	815261	PLA2-ALPHA	Encodes a secretory phospholipase A2 enzyme, which specifically hydrolyzes the sn-2 position of phospholipids. The enzyme has a preference towards linoleoyl acyl chain over palmitoyl acyl chain. It also has a slight preference for phosphatidylcholine over phosphatidylethanolamine.	O.I.	C.G.	H.G.
10.1	99.2	51.6	At3g15110	820741	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane;BPO	O.I.	C.G.	H.G.
10.1	99.2	20.5	At5g59000	836017	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MOFPVBA	O.I.	C.G.	H.G.
10.0	99.2	120.3	At5g62720	836393	integral membrane HPP family protein	F:molecular_function unknown;P:biological_process unknown;C:integral to membrane, chloroplast inner membrane, chloroplast envelope;OBFP	O.I.	C.G.	H.G.
10.0	99.2	84.5	At3g46630	823816	-	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PBO	O.I.	C.G.	H.G.
10.0	99.2	30.1	At1g03660	839033	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
9.9	99.1	71.0	At2g28430	817391	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
9.9	99.1	45.4	At1g02300	839576	cathepsin B-like cysteine protease, putative	F:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis, regulation of catalytic activity;C:endomembrane system;MOPVBAF	O.I.	C.G.	H.G.
9.9	99.1	37.7	At3g46640	823817	PCL1 (PHYTOCLOCK 1)	Encodes a myb family transcription factor with a single Myb DNA-binding domain (type SHAQKYF) that is unique to plants and is essential for circadian rhythms, specifically for transcriptional regulation within the circadian clock. LUX is required for normal rhythmic expression of multiple clock outputs in both constant light and darkness. It is coregulated with TOC1 and seems to be repressed by CCA1 and LHY by direct binding of these proteins to the evening element in the LUX promoter.	O.I.	C.G.	H.G.
9.7	99.1	38.7	At1g53035	841737	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
9.7	99.1	24.0	At1g12710	837826	AtPP2-A12 (Phloem protein 2-A12)	This gene is predicted to encode a protein with a PP2 domain. This domain in present in lectins found in squash and cucumber, suggesting that this protein could potentially have carbohydrate binding capabilities.	O.I.	C.G.	H.G.
9.6	99.1	66.7	At5g06690	830558	WCRKC1 (WCRKC THIOREDOXIN 1)	Encodes a thioredoxin (WCRKC1) localized in chloroplast stroma. Contains a WCRKC motif.	O.I.	C.G.	H.G.
9.6	99.1	43.7	At2g35960	818169	NHL12	Encodes a protein whose sequence is similar to tobacco hairpin-induced gene (HIN1) and Arabidopsis non-race specific disease resistance gene (NDR1). Expression is not altered in response to cucumber mosaic virus or spermine.	O.I.	C.G.	H.G.
9.3	99.1	82.7	At1g74520	843793	ATHVA22A	Part of the AtHVA22a family. Protein expression is ABA- and stress-inducible.	O.I.	C.G.	H.G.
9.1	99.1	82.3	At3g10520	820216	AHB2 (ARABIDOPSIS HAEMOGLOBIN 2)	class 2 non-symbiotic hemoglobin	O.I.	C.G.	H.G.
9.0	99.1	36.0	At1g78995	844240	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
9.0	99.1	15.9	At4g01130	828207	acetylesterase, putative	F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOM	O.I.	C.G.	H.G.
9.0	99.1	11.3	At5g25210	832592	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
8.8	99.0	46.6	At1g26800	839223	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV	O.I.	C.G.	H.G.
8.8	99.0	41.5	At1g31940	840084	unknown protein	F:unknown;P:unknown;C:plasma membrane;P	O.I.	C.G.	H.G.
8.7	99.0	194.2	At3g22210	821785	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
8.7	99.0	30.7	At3g23880	821971	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:nucleus;PO	O.I.	C.G.	H.G.
8.6	99.0	45.5	At5g62480	836368	ATGSTU9 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 9)	Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).	O.I.	C.G.	H.G.
8.6	99.0	21.9	At3g47640	823918	basic helix-loop-helix (bHLH) family protein	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus, chloroplast;PMO	O.I.	C.G.	H.G.

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GSM ID	GSM134448
Assay name	St.Clair_1-73_291_Mt-0_0.02%-silwet_Rep1_ATH1
GSE experiment	GSE5758: Expression Level Polymorphism Project (ELP) - Mt-0

Microarray experiments to specifically-expressed genes

GSM ID GSM134448 Assay name St.Clair_1-73_291_Mt-0_0.02%-silwet_Rep1_ATH1 GSE experiment GSE5758: Expression Level Polymorphism Project (ELP) - Mt-0

GSM ID GSM134448

Assay name St.Clair_1-73_291_Mt-0_0.02%-silwet_Rep1_ATH1

GSE experiment GSE5758: Expression Level Polymorphism Project (ELP) - Mt-0