CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM134409

Assay name St.Clair_1-106_298_Tsu-1_0.30mM-SA-in-0.02%-silwet_Rep1_ATH1

GSE experiment GSE5755: Expression Level Polymorphism Project (ELP) - Tsu-1

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
43.0 99.8 31.3 At3g19350 821469 MPC (MATERNALLY EXPRESSED PAB C-TERMINAL) Encodes a the C-terminal domain of poly(A) binding proteins. MPC is imprinted such that only the maternal allele is expressed in the endosperm. MPC is silenced by the action of MET1 and its expression is promoted by DEM. O.I. C.G. H.G.
16.4 99.5 90.2 At1g30250 839905 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
16.2 99.5 83.4 At2g21530 816692 forkhead-associated domain-containing protein / FHA domain-containing protein F:unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast stroma, chloroplast;BPOAM O.I. C.G. H.G.
15.7 99.5 54.0 At2g39920 818579 acid phosphatase class B family protein F:acid phosphatase activity;P:response to cadmium ion;C:cellular_component unknown;PBO O.I. C.G. H.G.
13.9 99.4 151.8 At1g29395 839815 COR414-TM1 encodes a protein similar to the cold acclimation protein WCOR413 in wheat. Expression is induced by short-term cold-treatment, water deprivation, and abscisic acid treatment. Possibly targeted to thylakoid membrane. O.I. C.G. H.G.
13.9 99.4 20.4 At1g18710 838453 AtMYB47 (myb domain protein 47) Member of the R2R3 factor gene family. O.I. C.G. H.G.
13.5 99.4 67.4 At1g76590 843992 zinc-binding family protein F:binding;P:biological_process unknown;C:unknown;PM O.I. C.G. H.G.
13.4 99.4 39.4 At1g49230 841346 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV O.I. C.G. H.G.
13.0 99.4 97.3 At1g07280 837239 binding F:binding;P:biological_process unknown;C:chloroplast;PBOAFM O.I. C.G. H.G.
12.9 99.3 20.7 At4g11370 826739 RHA1A Encodes a putative RING-H2 finger protein RHA1a. O.I. C.G. H.G.
12.8 99.3 34.5 At4g27050 828813 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
12.6 99.3 37.7 At1g07050 837216 CONSTANS-like protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POF O.I. C.G. H.G.
12.1 99.3 167.5 At4g29190 829040 zinc finger (CCCH-type) family protein F:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;POMF O.I. C.G. H.G.
11.9 99.3 10.1 At2g30420 817593 ETC2 In a tandem repeat with AT2G30424 and AT2G30432 O.I. C.G. H.G.
11.5 99.3 32.1 At2g35820 818155 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPO O.I. C.G. H.G.
11.3 99.3 12.6 At2g29160 3768464 - F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
11.1 99.2 14.9 At3g43790 823490 ZIFL2 (ZINC INDUCED FACILITATOR-like 2) F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:response to nematode;C:membrane;BFOMAP O.I. C.G. H.G.
10.3 99.2 46.2 At1g02300 839576 cathepsin B-like cysteine protease, putative F:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis, regulation of catalytic activity;C:endomembrane system;MOPVBAF O.I. C.G. H.G.
10.2 99.2 32.8 At4g33980 829544 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFMO O.I. C.G. H.G.
9.4 99.1 37.9 At1g53035 841737 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
9.3 99.1 182.2 At1g10760 837619 SEX1 (STARCH EXCESS 1) Encodes an α-glucan, water dikinase required for starch degradation. Involved in cold-induced freezing tolerance. Mutations that eliminate the GWD protein or affect the dikinase domain of the enzyme dramatically reduce both the amount of phosphate in the amylopectin and the rate of starch degradation. Mature leaves of these mutants accumulate amounts of starch up to seven times greater than those in wild-type leaves. NMR analysis of the mutants, suggests that the gene is specifically involved in the phosphorylation of the glucosyl residues of starch at the C6 position. O.I. C.G. H.G.
9.0 99.1 72.3 At1g22770 838883 GI (GIGANTEA) Together with CONSTANTS (CO) and FLOWERING LOCUS T (FT), GIGANTEA promotes flowering under long days in a circadian clock-controlled flowering pathway. GI acts earlier than CO and FT in the pathway by increasing CO and FT mRNA abundance. Located in the nucleus. Regulates several developmental processes, including photoperiod-mediated flowering, phytochrome B signaling, circadian clock, carbohydrate metabolism, and cold stress response. The gene's transcription is controlled by the circadian clock and it is post-transcriptionally regulated by light and dark. Forms a complex with FKF1 on the CO promoter to regulate CO expression. O.I. C.G. H.G.
9.0 99.1 31.7 At4g16770 827383 iron ion binding / oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity, iron ion binding;P:flavonoid biosynthetic process;C:peroxisome;POBFM O.I. C.G. H.G.
8.9 99.0 49.0 At5g24470 832518 APRR5 (ARABIDOPSIS PSEUDO-RESPONSE REGULATOR 5) Encodes a pseudo-response regulator whose mutation affects various circadian-associated biological events such as flowering time in the long-day photoperiod conditions, red light sensitivity of seedlings during early photomorphogenesis, and the period of free-running rhythms of certain clock-controlled genes including CCA1 and APRR1/TOC1 in constant white light. O.I. C.G. H.G.
8.8 99.0 27.6 At2g23480 816880 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
8.7 99.0 192.6 At2g42530 818853 COR15B (COLD REGULATED 15B) F:unknown;P:response to cold;C:chloroplast, chloroplast stroma, chloroplast envelope;PBOMF O.I. C.G. H.G.
8.7 99.0 69.3 At1g47400 841144 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
8.6 99.0 18.9 At4g23880 828487 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPF O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
43.0	99.8	31.3	At3g19350	821469	MPC (MATERNALLY EXPRESSED PAB C-TERMINAL)	Encodes a the C-terminal domain of poly(A) binding proteins. MPC is imprinted such that only the maternal allele is expressed in the endosperm. MPC is silenced by the action of MET1 and its expression is promoted by DEM.	O.I.	C.G.	H.G.
16.4	99.5	90.2	At1g30250	839905	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
16.2	99.5	83.4	At2g21530	816692	forkhead-associated domain-containing protein / FHA domain-containing protein	F:unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast stroma, chloroplast;BPOAM	O.I.	C.G.	H.G.
15.7	99.5	54.0	At2g39920	818579	acid phosphatase class B family protein	F:acid phosphatase activity;P:response to cadmium ion;C:cellular_component unknown;PBO	O.I.	C.G.	H.G.
13.9	99.4	151.8	At1g29395	839815	COR414-TM1	encodes a protein similar to the cold acclimation protein WCOR413 in wheat. Expression is induced by short-term cold-treatment, water deprivation, and abscisic acid treatment. Possibly targeted to thylakoid membrane.	O.I.	C.G.	H.G.
13.9	99.4	20.4	At1g18710	838453	AtMYB47 (myb domain protein 47)	Member of the R2R3 factor gene family.	O.I.	C.G.	H.G.
13.5	99.4	67.4	At1g76590	843992	zinc-binding family protein	F:binding;P:biological_process unknown;C:unknown;PM	O.I.	C.G.	H.G.
13.4	99.4	39.4	At1g49230	841346	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV	O.I.	C.G.	H.G.
13.0	99.4	97.3	At1g07280	837239	binding	F:binding;P:biological_process unknown;C:chloroplast;PBOAFM	O.I.	C.G.	H.G.
12.9	99.3	20.7	At4g11370	826739	RHA1A	Encodes a putative RING-H2 finger protein RHA1a.	O.I.	C.G.	H.G.
12.8	99.3	34.5	At4g27050	828813	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
12.6	99.3	37.7	At1g07050	837216	CONSTANS-like protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POF	O.I.	C.G.	H.G.
12.1	99.3	167.5	At4g29190	829040	zinc finger (CCCH-type) family protein	F:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;POMF	O.I.	C.G.	H.G.
11.9	99.3	10.1	At2g30420	817593	ETC2	In a tandem repeat with AT2G30424 and AT2G30432	O.I.	C.G.	H.G.
11.5	99.3	32.1	At2g35820	818155	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPO	O.I.	C.G.	H.G.
11.3	99.3	12.6	At2g29160	3768464	-	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
11.1	99.2	14.9	At3g43790	823490	ZIFL2 (ZINC INDUCED FACILITATOR-like 2)	F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:response to nematode;C:membrane;BFOMAP	O.I.	C.G.	H.G.
10.3	99.2	46.2	At1g02300	839576	cathepsin B-like cysteine protease, putative	F:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis, regulation of catalytic activity;C:endomembrane system;MOPVBAF	O.I.	C.G.	H.G.
10.2	99.2	32.8	At4g33980	829544	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFMO	O.I.	C.G.	H.G.
9.4	99.1	37.9	At1g53035	841737	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
9.3	99.1	182.2	At1g10760	837619	SEX1 (STARCH EXCESS 1)	Encodes an α-glucan, water dikinase required for starch degradation. Involved in cold-induced freezing tolerance. Mutations that eliminate the GWD protein or affect the dikinase domain of the enzyme dramatically reduce both the amount of phosphate in the amylopectin and the rate of starch degradation. Mature leaves of these mutants accumulate amounts of starch up to seven times greater than those in wild-type leaves. NMR analysis of the mutants, suggests that the gene is specifically involved in the phosphorylation of the glucosyl residues of starch at the C6 position.	O.I.	C.G.	H.G.
9.0	99.1	72.3	At1g22770	838883	GI (GIGANTEA)	Together with CONSTANTS (CO) and FLOWERING LOCUS T (FT), GIGANTEA promotes flowering under long days in a circadian clock-controlled flowering pathway. GI acts earlier than CO and FT in the pathway by increasing CO and FT mRNA abundance. Located in the nucleus. Regulates several developmental processes, including photoperiod-mediated flowering, phytochrome B signaling, circadian clock, carbohydrate metabolism, and cold stress response. The gene's transcription is controlled by the circadian clock and it is post-transcriptionally regulated by light and dark. Forms a complex with FKF1 on the CO promoter to regulate CO expression.	O.I.	C.G.	H.G.
9.0	99.1	31.7	At4g16770	827383	iron ion binding / oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity, iron ion binding;P:flavonoid biosynthetic process;C:peroxisome;POBFM	O.I.	C.G.	H.G.
8.9	99.0	49.0	At5g24470	832518	APRR5 (ARABIDOPSIS PSEUDO-RESPONSE REGULATOR 5)	Encodes a pseudo-response regulator whose mutation affects various circadian-associated biological events such as flowering time in the long-day photoperiod conditions, red light sensitivity of seedlings during early photomorphogenesis, and the period of free-running rhythms of certain clock-controlled genes including CCA1 and APRR1/TOC1 in constant white light.	O.I.	C.G.	H.G.
8.8	99.0	27.6	At2g23480	816880	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
8.7	99.0	192.6	At2g42530	818853	COR15B (COLD REGULATED 15B)	F:unknown;P:response to cold;C:chloroplast, chloroplast stroma, chloroplast envelope;PBOMF	O.I.	C.G.	H.G.
8.7	99.0	69.3	At1g47400	841144	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
8.6	99.0	18.9	At4g23880	828487	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPF	O.I.	C.G.	H.G.

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GSM ID	GSM134409
Assay name	St.Clair_1-106_298_Tsu-1_0.30mM-SA-in-0.02%-silwet_Rep1_ATH1
GSE experiment	GSE5755: Expression Level Polymorphism Project (ELP) - Tsu-1

Microarray experiments to specifically-expressed genes

GSM ID GSM134409 Assay name St.Clair_1-106_298_Tsu-1_0.30mM-SA-in-0.02%-silwet_Rep1_ATH1 GSE experiment GSE5755: Expression Level Polymorphism Project (ELP) - Tsu-1

GSM ID GSM134409

Assay name St.Clair_1-106_298_Tsu-1_0.30mM-SA-in-0.02%-silwet_Rep1_ATH1

GSE experiment GSE5755: Expression Level Polymorphism Project (ELP) - Tsu-1