CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM134400

Assay name St.Clair_1-97_296_Tsu-1_0.02%-silwet_Rep1_ATH1

GSE experiment GSE5755: Expression Level Polymorphism Project (ELP) - Tsu-1

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
39.8 99.8 130.5 At2g21530 816692 forkhead-associated domain-containing protein / FHA domain-containing protein F:unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast stroma, chloroplast;BPOAM O.I. C.G. H.G.
36.0 99.7 22.4 At2g29160 3768464 - F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
29.7 99.7 121.3 At1g30250 839905 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
25.6 99.7 14.7 At2g30420 817593 ETC2 In a tandem repeat with AT2G30424 and AT2G30432 O.I. C.G. H.G.
24.1 99.6 52.1 At1g07050 837216 CONSTANS-like protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POF O.I. C.G. H.G.
23.6 99.6 66.3 At2g39920 818579 acid phosphatase class B family protein F:acid phosphatase activity;P:response to cadmium ion;C:cellular_component unknown;PBO O.I. C.G. H.G.
23.0 99.6 90.1 At5g42900 834301 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
19.9 99.6 25.7 At4g11370 826739 RHA1A Encodes a putative RING-H2 finger protein RHA1a. O.I. C.G. H.G.
18.4 99.5 239.5 At5g44420 834469 PDF1.2 Encodes an ethylene- and jasmonate-responsive plant defensin. mRNA levels are not responsive to salicylic acid treatment; although jasmonate and salicylic acid can act synergistically to enhance the expression of this gene. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2. O.I. C.G. H.G.
17.8 99.5 78.3 At5g53940 835477 yippee family protein F:unknown;P:biological_process unknown;C:unknown;MFPO O.I. C.G. H.G.
17.6 99.5 31.0 At5g36120 833608 CCB3 (COFACTOR ASSEMBLY, COMPLEX C (B6F),) F:molecular_function unknown;P:cytochrome b6f complex assembly;C:chloroplast thylakoid membrane, chloroplast;BOP O.I. C.G. H.G.
16.7 99.5 96.6 At1g52410 841671 TSA1 (TSK-ASSOCIATING PROTEIN 1) Contains a novel calcium-binding repeat sequence. Binds TSK in vitro. Localizes to small cytoplasmic vesicles in interphase cells. In cells synchronized for cell division, TSA1 and TSK relocalize to ends of spindle microtubules that are ahead of separating chromatids during metaphase and anaphase of mitosis. May be involved in mitosis together with TSK. Expressed preferentially in the flower and shoot apex. Can form multimers. O.I. C.G. H.G.
16.6 99.5 49.0 At1g78995 844240 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
16.3 99.5 38.3 At2g35820 818155 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPO O.I. C.G. H.G.
14.8 99.4 82.1 At1g30260 839906 - F:molecular_function unknown;P:response to cytokinin stimulus;C:unknown;P O.I. C.G. H.G.
14.5 99.4 20.8 At1g18710 838453 AtMYB47 (myb domain protein 47) Member of the R2R3 factor gene family. O.I. C.G. H.G.
14.3 99.4 50.6 At5g39210 833917 CRR7 (CHLORORESPIRATORY REDUCTION 7) Encodes a protein of the chloroplastic NAD(P)H dehydrogenase complex (NDH Complex) involved in respiration, photosystem I (PSI) cyclic electron transport and CO2 uptake. The product of this gene appears to be essential for the stable formation of the NDH Complex. O.I. C.G. H.G.
13.7 99.4 67.8 At1g76590 843992 zinc-binding family protein F:binding;P:biological_process unknown;C:unknown;PM O.I. C.G. H.G.
13.6 99.4 215.4 At4g14270 827068 - Protein containing PAM2 motif which mediates interaction with the PABC domain of polyadenyl binding proteins. O.I. C.G. H.G.
13.4 99.4 209.6 At2g26020 817143 PDF1.2b (plant defensin 1.2b) Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2. O.I. C.G. H.G.
13.4 99.4 69.4 At1g12845 837841 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
13.3 99.4 192.2 At1g19960 838585 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOB O.I. C.G. H.G.
13.1 99.4 146.3 At3g28220 822448 meprin and TRAF homology domain-containing protein / MATH domain-containing protein F:molecular_function unknown;P:response to salt stress;C:vacuole, chloroplast envelope;PMO O.I. C.G. H.G.
13.0 99.4 196.9 At3g56400 824807 WRKY70 member of WRKY Transcription Factor; Group III. Function as activator of SA-dependent defense genes and a repressor of JA-regulated genes. WRKY70-controlled suppression of JA-signaling is partly executed by NPR1. O.I. C.G. H.G.
12.8 99.3 97.8 At3g10520 820216 AHB2 (ARABIDOPSIS HAEMOGLOBIN 2) class 2 non-symbiotic hemoglobin O.I. C.G. H.G.
12.5 99.3 39.7 At2g01870 814718 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast;P O.I. C.G. H.G.
12.3 99.3 120.2 At4g11360 826738 RHA1B Encodes a putative RING-H2 finger protein RHA1b. O.I. C.G. H.G.
12.3 99.3 93.4 At3g46630 823816 - F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PBO O.I. C.G. H.G.
12.3 99.3 43.0 At2g38790 818461 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
12.2 99.3 34.4 At2g47880 819400 glutaredoxin family protein F:electron carrier activity, arsenate reductase (glutaredoxin) activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:endomembrane system;PMFBO O.I. C.G. H.G.
12.1 99.3 41.8 At2g03310 814860 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
11.9 99.3 98.0 At2g40750 818670 WRKY54 member of WRKY Transcription Factor; Group III O.I. C.G. H.G.
11.8 99.3 43.8 At5g11150 830984 ATVAMP713 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 713) Member of Synaptobrevin-like AtVAMP7C, v-SNARE protein family. O.I. C.G. H.G.
11.7 99.3 92.4 At1g07280 837239 binding F:binding;P:biological_process unknown;C:chloroplast;PBOAFM O.I. C.G. H.G.
11.7 99.3 34.2 At1g65420 842853 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO O.I. C.G. H.G.
11.6 99.3 55.5 At3g15110 820741 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane;BPO O.I. C.G. H.G.
11.4 99.3 129.3 At1g10200 837558 WLIM1 F:transcription factor activity, zinc ion binding;P:biological_process unknown;C:plasma membrane;MPOF O.I. C.G. H.G.
11.4 99.3 32.0 At5g16380 831499 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO O.I. C.G. H.G.
11.2 99.2 31.5 At5g62900 836410 unknown protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;P O.I. C.G. H.G.
11.0 99.2 208.1 At5g55450 835638 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:response to other organism, lipid transport;C:endomembrane system;P O.I. C.G. H.G.
11.0 99.2 101.9 At1g56300 842083 DNAJ heat shock N-terminal domain-containing protein F:heat shock protein binding;P:protein folding, response to cyclopentenone;C:cellular_component unknown;BOMFPAV O.I. C.G. H.G.
10.7 99.2 118.1 At3g56710 824838 SIB1 (SIGMA FACTOR BINDING PROTEIN 1) Sig1 binding protein; interacts with Sig1R4. As well as Sig1, SibI is imported into chloroplasts and its expression is light-dependent in mature chloroplasts. O.I. C.G. H.G.
10.6 99.2 13.6 At4g03820 825687 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
10.4 99.2 84.9 At4g26670 828774 mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein F:protein transporter activity, P-P-bond-hydrolysis-driven protein transmembrane transporter activity;P:protein transport;C:chloroplast, mitochondrial inner membrane presequence translocase complex, chloroplast envelope;MFPO O.I. C.G. H.G.
10.3 99.2 12.1 At5g04150 830293 BHLH101 F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMOVBF O.I. C.G. H.G.
10.2 99.2 24.8 At5g05090 830391 myb family transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;PO O.I. C.G. H.G.
10.1 99.2 153.5 At4g29190 829040 zinc finger (CCCH-type) family protein F:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;POMF O.I. C.G. H.G.
10.1 99.2 121.2 At5g62720 836393 integral membrane HPP family protein F:molecular_function unknown;P:biological_process unknown;C:integral to membrane, chloroplast inner membrane, chloroplast envelope;OBFP O.I. C.G. H.G.
10.1 99.2 32.7 At4g33980 829544 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFMO O.I. C.G. H.G.
10.0 99.2 44.4 At1g73530 843687 RNA recognition motif (RRM)-containing protein F:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:chloroplast;MPFOBA O.I. C.G. H.G.
9.9 99.1 67.8 At5g06690 830558 WCRKC1 (WCRKC THIOREDOXIN 1) Encodes a thioredoxin (WCRKC1) localized in chloroplast stroma. Contains a WCRKC motif. O.I. C.G. H.G.
9.8 99.1 204.2 At2g42530 818853 COR15B (COLD REGULATED 15B) F:unknown;P:response to cold;C:chloroplast, chloroplast stroma, chloroplast envelope;PBOMF O.I. C.G. H.G.
9.7 99.1 118.6 At3g48640 824024 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
9.6 99.1 36.4 At4g31560 829283 HCF153 Encodes HCF153, a 15-KDa protein involved in the biogenesis of the cytochrome b(6)f complex. Associated with the thylakoid membrane. O.I. C.G. H.G.
9.5 99.1 125.6 At1g29395 839815 COR414-TM1 encodes a protein similar to the cold acclimation protein WCOR413 in wheat. Expression is induced by short-term cold-treatment, water deprivation, and abscisic acid treatment. Possibly targeted to thylakoid membrane. O.I. C.G. H.G.
9.5 99.1 49.8 At3g01440 821143 oxygen evolving enhancer 3 (PsbQ) family protein F:calcium ion binding;P:photosynthesis, light reaction;C:chloroplast thylakoid membrane, chloroplast photosystem II, chloroplast thylakoid lumen, chloroplast, oxygen evolving complex;P O.I. C.G. H.G.
9.5 99.1 40.7 At5g46710 834714 zinc-binding family protein F:binding;P:biological_process unknown;C:unknown;POM O.I. C.G. H.G.
9.5 99.1 13.5 At1g52770 841710 phototropic-responsive NPH3 family protein F:signal transducer activity;P:response to light stimulus;C:cellular_component unknown;P O.I. C.G. H.G.
9.4 99.1 110.7 At1g28140 839708 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BPMO O.I. C.G. H.G.
9.4 99.1 38.5 At4g03150 828059 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BP O.I. C.G. H.G.
9.4 99.1 32.2 At4g16770 827383 iron ion binding / oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity, iron ion binding;P:flavonoid biosynthetic process;C:peroxisome;POBFM O.I. C.G. H.G.
9.1 99.1 35.5 At1g70420 843378 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO O.I. C.G. H.G.
9.0 99.1 106.9 At3g50500 824214 SNRK2.2 (SNF1-RELATED PROTEIN KINASE 2.2) encodes a member of SNF1-related protein kinases (SnRK2) whose activity is activated by ionic (salt) and non-ionic (mannitol) osmotic stress. Enzyme involved in the ABA signaling during seed germination, dormancy and seedling growth. O.I. C.G. H.G.
9.0 99.1 20.4 At2g25190 817057 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;MPOF O.I. C.G. H.G.
8.9 99.0 56.5 At1g13470 837907 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
8.9 99.0 34.2 At4g24090 828509 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BPFOMA O.I. C.G. H.G.
8.9 99.0 34.0 At3g11090 820280 LBD21 (LOB DOMAIN-CONTAINING PROTEIN 21) F:unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
8.8 99.0 17.3 At2g26580 817199 YAB5 (YABBY5) F:transcription factor activity;P:regulation of transcription;C:unknown;POF O.I. C.G. H.G.
8.7 99.0 98.4 At4g04330 825753 unknown protein F:unknown;P:unknown;C:unknown;BPO O.I. C.G. H.G.
8.7 99.0 76.0 At4g00895 827987 ATP synthase delta chain-related F:hydrogen ion transporting ATP synthase activity, rotational mechanism, proton-transporting ATPase activity, rotational mechanism;P:ATP synthesis coupled proton transport;C:proton-transporting ATP synthase complex, catalytic core F(1), chloroplast;PFMO O.I. C.G. H.G.
8.7 99.0 65.3 At1g78620 844198 integral membrane family protein F:unknown;P:unknown;C:chloroplast, chloroplast inner membrane, chloroplast envelope;OBAMPF O.I. C.G. H.G.
8.6 99.0 193.1 At3g22210 821785 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
8.6 99.0 29.0 At3g01660 821098 methyltransferase F:methyltransferase activity;P:metabolic process;C:cellular_component unknown;BOPMAF O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
39.8	99.8	130.5	At2g21530	816692	forkhead-associated domain-containing protein / FHA domain-containing protein	F:unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast stroma, chloroplast;BPOAM	O.I.	C.G.	H.G.
36.0	99.7	22.4	At2g29160	3768464	-	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
29.7	99.7	121.3	At1g30250	839905	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
25.6	99.7	14.7	At2g30420	817593	ETC2	In a tandem repeat with AT2G30424 and AT2G30432	O.I.	C.G.	H.G.
24.1	99.6	52.1	At1g07050	837216	CONSTANS-like protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POF	O.I.	C.G.	H.G.
23.6	99.6	66.3	At2g39920	818579	acid phosphatase class B family protein	F:acid phosphatase activity;P:response to cadmium ion;C:cellular_component unknown;PBO	O.I.	C.G.	H.G.
23.0	99.6	90.1	At5g42900	834301	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
19.9	99.6	25.7	At4g11370	826739	RHA1A	Encodes a putative RING-H2 finger protein RHA1a.	O.I.	C.G.	H.G.
18.4	99.5	239.5	At5g44420	834469	PDF1.2	Encodes an ethylene- and jasmonate-responsive plant defensin. mRNA levels are not responsive to salicylic acid treatment; although jasmonate and salicylic acid can act synergistically to enhance the expression of this gene. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.	O.I.	C.G.	H.G.
17.8	99.5	78.3	At5g53940	835477	yippee family protein	F:unknown;P:biological_process unknown;C:unknown;MFPO	O.I.	C.G.	H.G.
17.6	99.5	31.0	At5g36120	833608	CCB3 (COFACTOR ASSEMBLY, COMPLEX C (B6F),)	F:molecular_function unknown;P:cytochrome b6f complex assembly;C:chloroplast thylakoid membrane, chloroplast;BOP	O.I.	C.G.	H.G.
16.7	99.5	96.6	At1g52410	841671	TSA1 (TSK-ASSOCIATING PROTEIN 1)	Contains a novel calcium-binding repeat sequence. Binds TSK in vitro. Localizes to small cytoplasmic vesicles in interphase cells. In cells synchronized for cell division, TSA1 and TSK relocalize to ends of spindle microtubules that are ahead of separating chromatids during metaphase and anaphase of mitosis. May be involved in mitosis together with TSK. Expressed preferentially in the flower and shoot apex. Can form multimers.	O.I.	C.G.	H.G.
16.6	99.5	49.0	At1g78995	844240	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
16.3	99.5	38.3	At2g35820	818155	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPO	O.I.	C.G.	H.G.
14.8	99.4	82.1	At1g30260	839906	-	F:molecular_function unknown;P:response to cytokinin stimulus;C:unknown;P	O.I.	C.G.	H.G.
14.5	99.4	20.8	At1g18710	838453	AtMYB47 (myb domain protein 47)	Member of the R2R3 factor gene family.	O.I.	C.G.	H.G.
14.3	99.4	50.6	At5g39210	833917	CRR7 (CHLORORESPIRATORY REDUCTION 7)	Encodes a protein of the chloroplastic NAD(P)H dehydrogenase complex (NDH Complex) involved in respiration, photosystem I (PSI) cyclic electron transport and CO2 uptake. The product of this gene appears to be essential for the stable formation of the NDH Complex.	O.I.	C.G.	H.G.
13.7	99.4	67.8	At1g76590	843992	zinc-binding family protein	F:binding;P:biological_process unknown;C:unknown;PM	O.I.	C.G.	H.G.
13.6	99.4	215.4	At4g14270	827068	-	Protein containing PAM2 motif which mediates interaction with the PABC domain of polyadenyl binding proteins.	O.I.	C.G.	H.G.
13.4	99.4	209.6	At2g26020	817143	PDF1.2b (plant defensin 1.2b)	Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.	O.I.	C.G.	H.G.
13.4	99.4	69.4	At1g12845	837841	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
13.3	99.4	192.2	At1g19960	838585	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOB	O.I.	C.G.	H.G.
13.1	99.4	146.3	At3g28220	822448	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	F:molecular_function unknown;P:response to salt stress;C:vacuole, chloroplast envelope;PMO	O.I.	C.G.	H.G.
13.0	99.4	196.9	At3g56400	824807	WRKY70	member of WRKY Transcription Factor; Group III. Function as activator of SA-dependent defense genes and a repressor of JA-regulated genes. WRKY70-controlled suppression of JA-signaling is partly executed by NPR1.	O.I.	C.G.	H.G.
12.8	99.3	97.8	At3g10520	820216	AHB2 (ARABIDOPSIS HAEMOGLOBIN 2)	class 2 non-symbiotic hemoglobin	O.I.	C.G.	H.G.
12.5	99.3	39.7	At2g01870	814718	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast;P	O.I.	C.G.	H.G.
12.3	99.3	120.2	At4g11360	826738	RHA1B	Encodes a putative RING-H2 finger protein RHA1b.	O.I.	C.G.	H.G.
12.3	99.3	93.4	At3g46630	823816	-	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PBO	O.I.	C.G.	H.G.
12.3	99.3	43.0	At2g38790	818461	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
12.2	99.3	34.4	At2g47880	819400	glutaredoxin family protein	F:electron carrier activity, arsenate reductase (glutaredoxin) activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:endomembrane system;PMFBO	O.I.	C.G.	H.G.
12.1	99.3	41.8	At2g03310	814860	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
11.9	99.3	98.0	At2g40750	818670	WRKY54	member of WRKY Transcription Factor; Group III	O.I.	C.G.	H.G.
11.8	99.3	43.8	At5g11150	830984	ATVAMP713 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 713)	Member of Synaptobrevin-like AtVAMP7C, v-SNARE protein family.	O.I.	C.G.	H.G.
11.7	99.3	92.4	At1g07280	837239	binding	F:binding;P:biological_process unknown;C:chloroplast;PBOAFM	O.I.	C.G.	H.G.
11.7	99.3	34.2	At1g65420	842853	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO	O.I.	C.G.	H.G.
11.6	99.3	55.5	At3g15110	820741	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane;BPO	O.I.	C.G.	H.G.
11.4	99.3	129.3	At1g10200	837558	WLIM1	F:transcription factor activity, zinc ion binding;P:biological_process unknown;C:plasma membrane;MPOF	O.I.	C.G.	H.G.
11.4	99.3	32.0	At5g16380	831499	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO	O.I.	C.G.	H.G.
11.2	99.2	31.5	At5g62900	836410	unknown protein	F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;P	O.I.	C.G.	H.G.
11.0	99.2	208.1	At5g55450	835638	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:response to other organism, lipid transport;C:endomembrane system;P	O.I.	C.G.	H.G.
11.0	99.2	101.9	At1g56300	842083	DNAJ heat shock N-terminal domain-containing protein	F:heat shock protein binding;P:protein folding, response to cyclopentenone;C:cellular_component unknown;BOMFPAV	O.I.	C.G.	H.G.
10.7	99.2	118.1	At3g56710	824838	SIB1 (SIGMA FACTOR BINDING PROTEIN 1)	Sig1 binding protein; interacts with Sig1R4. As well as Sig1, SibI is imported into chloroplasts and its expression is light-dependent in mature chloroplasts.	O.I.	C.G.	H.G.
10.6	99.2	13.6	At4g03820	825687	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
10.4	99.2	84.9	At4g26670	828774	mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein	F:protein transporter activity, P-P-bond-hydrolysis-driven protein transmembrane transporter activity;P:protein transport;C:chloroplast, mitochondrial inner membrane presequence translocase complex, chloroplast envelope;MFPO	O.I.	C.G.	H.G.
10.3	99.2	12.1	At5g04150	830293	BHLH101	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMOVBF	O.I.	C.G.	H.G.
10.2	99.2	24.8	At5g05090	830391	myb family transcription factor	F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;PO	O.I.	C.G.	H.G.
10.1	99.2	153.5	At4g29190	829040	zinc finger (CCCH-type) family protein	F:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;POMF	O.I.	C.G.	H.G.
10.1	99.2	121.2	At5g62720	836393	integral membrane HPP family protein	F:molecular_function unknown;P:biological_process unknown;C:integral to membrane, chloroplast inner membrane, chloroplast envelope;OBFP	O.I.	C.G.	H.G.
10.1	99.2	32.7	At4g33980	829544	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFMO	O.I.	C.G.	H.G.
10.0	99.2	44.4	At1g73530	843687	RNA recognition motif (RRM)-containing protein	F:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:chloroplast;MPFOBA	O.I.	C.G.	H.G.
9.9	99.1	67.8	At5g06690	830558	WCRKC1 (WCRKC THIOREDOXIN 1)	Encodes a thioredoxin (WCRKC1) localized in chloroplast stroma. Contains a WCRKC motif.	O.I.	C.G.	H.G.
9.8	99.1	204.2	At2g42530	818853	COR15B (COLD REGULATED 15B)	F:unknown;P:response to cold;C:chloroplast, chloroplast stroma, chloroplast envelope;PBOMF	O.I.	C.G.	H.G.
9.7	99.1	118.6	At3g48640	824024	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
9.6	99.1	36.4	At4g31560	829283	HCF153	Encodes HCF153, a 15-KDa protein involved in the biogenesis of the cytochrome b(6)f complex. Associated with the thylakoid membrane.	O.I.	C.G.	H.G.
9.5	99.1	125.6	At1g29395	839815	COR414-TM1	encodes a protein similar to the cold acclimation protein WCOR413 in wheat. Expression is induced by short-term cold-treatment, water deprivation, and abscisic acid treatment. Possibly targeted to thylakoid membrane.	O.I.	C.G.	H.G.
9.5	99.1	49.8	At3g01440	821143	oxygen evolving enhancer 3 (PsbQ) family protein	F:calcium ion binding;P:photosynthesis, light reaction;C:chloroplast thylakoid membrane, chloroplast photosystem II, chloroplast thylakoid lumen, chloroplast, oxygen evolving complex;P	O.I.	C.G.	H.G.
9.5	99.1	40.7	At5g46710	834714	zinc-binding family protein	F:binding;P:biological_process unknown;C:unknown;POM	O.I.	C.G.	H.G.
9.5	99.1	13.5	At1g52770	841710	phototropic-responsive NPH3 family protein	F:signal transducer activity;P:response to light stimulus;C:cellular_component unknown;P	O.I.	C.G.	H.G.
9.4	99.1	110.7	At1g28140	839708	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BPMO	O.I.	C.G.	H.G.
9.4	99.1	38.5	At4g03150	828059	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BP	O.I.	C.G.	H.G.
9.4	99.1	32.2	At4g16770	827383	iron ion binding / oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity, iron ion binding;P:flavonoid biosynthetic process;C:peroxisome;POBFM	O.I.	C.G.	H.G.
9.1	99.1	35.5	At1g70420	843378	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO	O.I.	C.G.	H.G.
9.0	99.1	106.9	At3g50500	824214	SNRK2.2 (SNF1-RELATED PROTEIN KINASE 2.2)	encodes a member of SNF1-related protein kinases (SnRK2) whose activity is activated by ionic (salt) and non-ionic (mannitol) osmotic stress. Enzyme involved in the ABA signaling during seed germination, dormancy and seedling growth.	O.I.	C.G.	H.G.
9.0	99.1	20.4	At2g25190	817057	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;MPOF	O.I.	C.G.	H.G.
8.9	99.0	56.5	At1g13470	837907	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
8.9	99.0	34.2	At4g24090	828509	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BPFOMA	O.I.	C.G.	H.G.
8.9	99.0	34.0	At3g11090	820280	LBD21 (LOB DOMAIN-CONTAINING PROTEIN 21)	F:unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
8.8	99.0	17.3	At2g26580	817199	YAB5 (YABBY5)	F:transcription factor activity;P:regulation of transcription;C:unknown;POF	O.I.	C.G.	H.G.
8.7	99.0	98.4	At4g04330	825753	unknown protein	F:unknown;P:unknown;C:unknown;BPO	O.I.	C.G.	H.G.
8.7	99.0	76.0	At4g00895	827987	ATP synthase delta chain-related	F:hydrogen ion transporting ATP synthase activity, rotational mechanism, proton-transporting ATPase activity, rotational mechanism;P:ATP synthesis coupled proton transport;C:proton-transporting ATP synthase complex, catalytic core F(1), chloroplast;PFMO	O.I.	C.G.	H.G.
8.7	99.0	65.3	At1g78620	844198	integral membrane family protein	F:unknown;P:unknown;C:chloroplast, chloroplast inner membrane, chloroplast envelope;OBAMPF	O.I.	C.G.	H.G.
8.6	99.0	193.1	At3g22210	821785	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
8.6	99.0	29.0	At3g01660	821098	methyltransferase	F:methyltransferase activity;P:metabolic process;C:cellular_component unknown;BOPMAF	O.I.	C.G.	H.G.

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GSM ID	GSM134400
Assay name	St.Clair_1-97_296_Tsu-1_0.02%-silwet_Rep1_ATH1
GSE experiment	GSE5755: Expression Level Polymorphism Project (ELP) - Tsu-1

Microarray experiments to specifically-expressed genes

GSM ID GSM134400 Assay name St.Clair_1-97_296_Tsu-1_0.02%-silwet_Rep1_ATH1 GSE experiment GSE5755: Expression Level Polymorphism Project (ELP) - Tsu-1

GSM ID GSM134400

Assay name St.Clair_1-97_296_Tsu-1_0.02%-silwet_Rep1_ATH1

GSE experiment GSE5755: Expression Level Polymorphism Project (ELP) - Tsu-1