CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM134394

Assay name St.Clair_1-91_267b_Tsu-1_0.02%-silwet_Rep1_ATH1

GSE experiment GSE5755: Expression Level Polymorphism Project (ELP) - Tsu-1

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
56.0 99.8 130.9 At2g24210 816955 TPS10 (terpene synthase 10) F:myrcene synthase activity, (E)-beta-ocimene synthase activity;P:response to jasmonic acid stimulus, monoterpenoid biosynthetic process, response to wounding;C:unknown;PO O.I. C.G. H.G.
52.6 99.8 171.3 At1g52410 841671 TSA1 (TSK-ASSOCIATING PROTEIN 1) Contains a novel calcium-binding repeat sequence. Binds TSK in vitro. Localizes to small cytoplasmic vesicles in interphase cells. In cells synchronized for cell division, TSA1 and TSK relocalize to ends of spindle microtubules that are ahead of separating chromatids during metaphase and anaphase of mitosis. May be involved in mitosis together with TSK. Expressed preferentially in the flower and shoot apex. Can form multimers. O.I. C.G. H.G.
50.3 99.8 178.1 At5g43450 834365 2-oxoglutarate-dependent dioxygenase, putative encodes a protein whose sequence is similar to ACC oxidase O.I. C.G. H.G.
43.1 99.8 158.0 At5g07010 830592 ST2A (SULFOTRANSFERASE 2A) Encodes a sulfotransferase that acts specifically on 11- and 12-hydroxyjasmonic acid. Transcript levels for this enzyme are increased by treatments with jasmonic acid (JA), 12-hydroxyJA, JA-isoleucine, and 12-oxyphytodienoic acid (a JA precursor). O.I. C.G. H.G.
40.0 99.8 188.9 At2g03760 814903 ST Encodes a brassinosteroid sulfotransferase. In vitro experiements show that this enzyme has a preference for 24-epibrassinosteroids, particularly 24-epicathasterone, but does not act on castasterone and brassinolide. It is differentially expressed during development, being more abundant in young seedlings and actively growing cell cultures. Expression is induced in response to salicylic acid and methyl jasmonate and bacterial pathogens. O.I. C.G. H.G.
36.5 99.7 77.2 At2g04050 814939 MATE efflux family protein F:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFMA O.I. C.G. H.G.
32.9 99.7 163.0 At3g51450 824308 strictosidine synthase family protein F:strictosidine synthase activity;P:alkaloid biosynthetic process, biosynthetic process;C:endomembrane system;BPMOAF O.I. C.G. H.G.
32.6 99.7 230.3 At3g28220 822448 meprin and TRAF homology domain-containing protein / MATH domain-containing protein F:molecular_function unknown;P:response to salt stress;C:vacuole, chloroplast envelope;PMO O.I. C.G. H.G.
32.1 99.7 82.7 At2g20340 816553 tyrosine decarboxylase, putative F:pyridoxal phosphate binding, carboxy-lyase activity, catalytic activity, tyrosine decarboxylase activity;P:amino acid metabolic process, response to wounding;C:cellular_component unknown;MBOFPAV O.I. C.G. H.G.
30.4 99.7 63.3 At3g61630 825336 CRF6 (CYTOKININ RESPONSE FACTOR 6) CRF6 encodes one of the six cytokinin response factors. CRF5 belongs to the AP2/ERF superfamily of the transcriptional factors. CRF proteins rapidly relocalize to the nucleus in response to cytokinin. Analysis of loos-of-function mutants revealed that the CRFs function redundantly to regulate the development of embryos, cotyledons and leaves. O.I. C.G. H.G.
29.1 99.7 89.0 At2g21640 816702 - Encodes a protein of unknown function that is a marker for oxidative stress response. O.I. C.G. H.G.
28.2 99.7 206.6 At2g39030 818489 GCN5-related N-acetyltransferase (GNAT) family protein F:N-acetyltransferase activity;P:metabolic process;C:cellular_component unknown;BOMFPA O.I. C.G. H.G.
28.0 99.7 155.1 At5g06870 830578 PGIP2 (POLYGALACTURONASE INHIBITING PROTEIN 2) Encodes a polygalacturonase inhibiting protein involved in plant defense response. PGIPs inhibit the activity of pectin degrading enzymes such as those produced by fungal pathogens. PGIP2 is induced by fungal infection and methyl jasmonate. O.I. C.G. H.G.
26.3 99.7 79.4 At5g62480 836368 ATGSTU9 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 9) Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). O.I. C.G. H.G.
26.1 99.7 132.0 At1g51760 841602 IAR3 (IAA-ALANINE RESISTANT 3) encodes a member of the six Arabidopsis IAA-amino acid conjugate hydrolase subfamily and conjugates and conjugates IAA-Ala in vitro. Gene is expressed most strongly in roots, stems, and flowers. O.I. C.G. H.G.
25.8 99.7 104.5 At4g17260 827440 L-lactate dehydrogenase, putative F:in 6 functions;P:response to salt stress, response to abscisic acid stimulus;C:plasma membrane;BOMFPA O.I. C.G. H.G.
25.5 99.7 76.2 At1g32940 840188 SBT3.5 F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:apoplast;BPOAFM O.I. C.G. H.G.
24.8 99.6 47.4 At1g03660 839033 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
22.9 99.6 172.3 At4g08870 826458 arginase, putative Encodes one of the two arginase in the genome. Gene expression is enhanced by methyl jasmonate treatment. O.I. C.G. H.G.
22.0 99.6 38.6 At5g19100 832030 extracellular dermal glycoprotein-related / EDGP-related F:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;P O.I. C.G. H.G.
21.8 99.6 134.1 At2g47000 819314 ABCB4 (ATP BINDING CASSETTE SUBFAMILY B4) Multidrug resistance P-glycoprotein (MDR/PGP) subfamily of ABC transporters. Functions in the basipetal redirection of auxin from the root tip. Exhibits apolar plasma membrane localization in the root cap and polar localization in tissues above. O.I. C.G. H.G.
19.9 99.6 68.7 At1g36280 840534 adenylosuccinate lyase, putative / adenylosuccinase, putative F:N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity, catalytic activity;P:purine ribonucleotide biosynthetic process, purine base biosynthetic process, IMP biosynthetic process;C:chloroplast;BOMFAP O.I. C.G. H.G.
19.8 99.6 38.9 At1g32870 840181 ANAC13 (Arabidopsis thaliana NAC domain protein 13) F:transcription factor activity;P:multicellular organismal development, response to UV-B, response to red light;C:cellular_component unknown;POMF O.I. C.G. H.G.
19.6 99.6 61.6 At3g48850 824046 mitochondrial phosphate transporter, putative F:binding;P:transport;C:mitochondrial inner membrane, chloroplast, membrane;MFPO O.I. C.G. H.G.
18.8 99.5 132.2 At4g37370 829891 CYP81D8 member of CYP81D O.I. C.G. H.G.
18.3 99.5 185.5 At2g41730 818772 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
18.3 99.5 24.5 At4g02360 827767 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO O.I. C.G. H.G.
17.9 99.5 118.8 At1g05680 837075 UDP-glucoronosyl/UDP-glucosyl transferase family protein F:transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity, UDP-glucosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBVOF O.I. C.G. H.G.
17.9 99.5 17.3 At5g61290 836250 flavin-containing monooxygenase family protein / FMO family protein F:NADP or NADPH binding, monooxygenase activity, FAD binding, flavin-containing monooxygenase activity;P:unknown;C:cellular_component unknown;BOMFPA O.I. C.G. H.G.
17.7 99.5 80.1 At4g27585 828868 band 7 family protein F:unknown;P:biological_process unknown;C:mitochondrion, plastid, membrane;BOMPAFV O.I. C.G. H.G.
17.7 99.5 79.7 At1g13470 837907 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
16.9 99.5 34.8 At1g74870 843826 protein binding / zinc ion binding F:protein binding, zinc ion binding;P:unknown;C:unknown;MFPOB O.I. C.G. H.G.
16.8 99.5 80.5 At1g78490 844185 CYP708A3 member of CYP708A O.I. C.G. H.G.
16.2 99.5 27.7 At1g51920 841620 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
16.1 99.5 26.9 At4g39740 830129 electron transport SCO1/SenC family protein F:molecular_function unknown;P:unknown;C:unknown;BOMFPA O.I. C.G. H.G.
16.0 99.5 228.1 At1g52030 841632 MBP2 (MYROSINASE-BINDING PROTEIN 2) Similar to myrosinase binding proteins which may be involved in metabolizing glucosinolates and forming defense compounds to protect against herbivory. Also similar to lectins and other agglutinating factors. Expressed only in flowers. O.I. C.G. H.G.
15.8 99.5 142.1 At5g24420 832513 glucosamine/galactosamine-6-phosphate isomerase-related F:6-phosphogluconolactonase activity;P:pentose-phosphate shunt, pentose-phosphate shunt, oxidative branch, carbohydrate metabolic process;C:cellular_component unknown;BOMFP O.I. C.G. H.G.
15.7 99.5 58.4 At3g55130 824679 ATWBC19 (White-Brown Complex homolog 19) Encodes a vacuole localized protein of the ABC transporter White-Brown Complex (WBC) family. When overexpressed in planta, confers resistance to kanamycin. O.I. C.G. H.G.
15.6 99.5 234.5 At5g42650 834273 AOS (ALLENE OXIDE SYNTHASE) Encodes a member of the cytochrome p450 CYP74 gene family that functions as an allene oxide synthase. This enzyme catalyzes dehydration of the hydroperoxide to an unstable allene oxide in the JA biosynthetic pathway. It shows a dual catalytic activity, the major one being a 13-AOS but also expressing a 9-AOS activity. O.I. C.G. H.G.
15.3 99.4 326.3 At3g16470 820895 JR1 JA-responsive gene O.I. C.G. H.G.
15.0 99.4 147.1 At3g48640 824024 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
14.5 99.4 63.1 At2g39330 818518 JAL23 (JACALIN-RELATED LECTIN 23) F:molecular_function unknown;P:biological_process unknown;C:vacuole;POF O.I. C.G. H.G.
14.2 99.4 69.6 At1g32350 840127 AOX1D (alternative oxidase 1D) F:alternative oxidase activity;P:oxidation reduction, response to cyclopentenone;C:mitochondrial envelope, mitochondrion;OPFBM O.I. C.G. H.G.
14.2 99.4 50.4 At4g17470 827458 palmitoyl protein thioesterase family protein F:palmitoyl-(protein) hydrolase activity;P:protein modification process;C:endomembrane system;MPFO O.I. C.G. H.G.
14.2 99.4 30.1 At3g48350 823993 cysteine proteinase, putative F:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis;C:endomembrane system;MOPVBAF O.I. C.G. H.G.
14.0 99.4 18.6 At2g35480 818113 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P O.I. C.G. H.G.
13.4 99.4 313.9 At4g23600 828460 CORI3 (CORONATINE INDUCED 1) Encodes cystine lyase which is expected to be involved in amino acid metabolism, providing the plant with cysteine and the generation of precursors of ethylene biosynthesis. mRNA levels are elevated in response to wounding. O.I. C.G. H.G.
13.3 99.4 54.8 At4g21900 828279 antiporter/ drug transporter/ transporter F:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport;C:membrane;MPO O.I. C.G. H.G.
13.3 99.4 34.3 At5g05190 830401 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPV O.I. C.G. H.G.
13.1 99.4 173.2 At1g76790 844013 O-methyltransferase family 2 protein F:methyltransferase activity, O-methyltransferase activity, protein dimerization activity;P:unknown;C:cytosol;PBFOM O.I. C.G. H.G.
13.1 99.4 24.6 At3g50760 824240 GATL2 (Galacturonosyltransferase-like 2) Encodes a protein with putative galacturonosyltransferase activity. O.I. C.G. H.G.
12.9 99.3 15.7 At1g52770 841710 phototropic-responsive NPH3 family protein F:signal transducer activity;P:response to light stimulus;C:cellular_component unknown;P O.I. C.G. H.G.
12.7 99.3 205.6 At3g22370 821806 AOX1A (ALTERNATIVE OXIDASE 1A) Encodes an isoform of alternative oxidase that is expressed in rosettes, flowers, and root. The alternative oxidase of plant mitochondria transfers electrons from the ubiquinone pool to oxygen without energy conservations. It is regulated through transcriptional control and by pyruvate. Plays a role in shoot acclimation to low temperature. Also is capable of ameliorating reactive oxygen species production when the cytochrome pathway is inhibited. O.I. C.G. H.G.
12.7 99.3 26.6 At4g13950 827029 RALFL31 (ralf-like 31) Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide. O.I. C.G. H.G.
12.6 99.3 195.8 At1g19670 838554 ATCLH1 (ARABIDOPSIS THALIANA CORONATINE-INDUCED PROTEIN 1) Chlorophyllase is the first enzyme involved in chlorophyll degradation. It catalyzes the hydrolysis of the ester bond to yield chlorophyllide and phytol. AtCLH1 lacks a typical signal sequence for the chloroplast. Its expression is induced rapidly by methyljasmonate, a known promoter of senescence and chlorophyll degradation. O.I. C.G. H.G.
12.6 99.3 20.7 At1g60270 3767579 - F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
12.5 99.3 37.2 At4g16770 827383 iron ion binding / oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity, iron ion binding;P:flavonoid biosynthetic process;C:peroxisome;POBFM O.I. C.G. H.G.
12.4 99.3 43.5 At1g53035 841737 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
12.4 99.3 16.3 At4g36830 829836 GNS1/SUR4 membrane family protein F:molecular_function unknown;P:biological_process unknown;C:integral to membrane;PFMOV O.I. C.G. H.G.
12.2 99.3 15.1 At1g24090 839020 RNase H domain-containing protein F:ribonuclease H activity, nucleic acid binding;P:biological_process unknown;C:unknown;PBOAM O.I. C.G. H.G.
12.0 99.3 33.3 At5g41400 834142 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFVB O.I. C.G. H.G.
11.8 99.3 43.7 At5g65280 836653 GCL1 (GCR2-LIKE 1) Encodes a protein with reported similarity to GCR2 a putative G protein coupled receptor thought to be an ABA receptor. Loss of function mutations in GCL1 show no ABA response defects based on assays of seed germination and seedling development.GCL1 also has similarity to LANCL1 and LANCL2, human homologs of bacterial lanthionine synthetase. O.I. C.G. H.G.
11.3 99.3 63.1 At4g18880 827622 AT-HSFA4A member of Heat Stress Transcription Factor (Hsf) family O.I. C.G. H.G.
10.7 99.2 150.4 At2g43550 818957 trypsin inhibitor, putative Encodes a defensin-like (DEFL) family protein. O.I. C.G. H.G.
10.6 99.2 68.4 At1g64900 842798 CYP89A2 (CYTOCHROME P450 89A2) Encodes cytochrome P450 (CYP89A2). O.I. C.G. H.G.
10.4 99.2 68.0 At3g55450 824711 protein kinase, putative F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA O.I. C.G. H.G.
10.4 99.2 30.3 At2g20720 816600 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
10.1 99.2 70.7 At1g30250 839905 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
10.1 99.2 21.8 At5g44050 834428 MATE efflux family protein F:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFMA O.I. C.G. H.G.
9.9 99.1 54.0 At2g34810 818046 FAD-binding domain-containing protein F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:response to jasmonic acid stimulus, response to wounding;C:endomembrane system;FBPOAM O.I. C.G. H.G.
9.9 99.1 21.1 At4g15260 827192 UDP-glucoronosyl/UDP-glucosyl transferase family protein F:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBOVF O.I. C.G. H.G.
9.9 99.1 18.2 At4g11370 826739 RHA1A Encodes a putative RING-H2 finger protein RHA1a. O.I. C.G. H.G.
9.8 99.1 44.5 At4g11890 826796 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MPOBFVA O.I. C.G. H.G.
9.7 99.1 191.8 At3g55620 824728 emb1624 (embryo defective 1624) F:ribosome binding, translation initiation factor activity;P:embryonic development ending in seed dormancy, translational initiation;C:nucleolus;AOMFP O.I. C.G. H.G.
9.7 99.1 128.0 At1g42990 840897 ATBZIP60 (BASIC REGION/LEUCINE ZIPPER MOTIF 60) AtbZIP60 consists of a bZIP DNA binding domain followed by a putative transmembrane domain. GFP fusions containing the first 260 amino acids (AtbZIP60deltaC) are nuclear-localized. AtbZIP60 is upregulated by the addition of tunicamycin (ER stress response inductor), DTT (inhibitor of disulfide bond formation) and azetin-2-carboxylate (proline analog perturbing protein structure). Upon ER stress the protein is proteolyzed and the soluble part is translocalized into the nucleus. AtbZIP60deltaC can activate the promoters of the ER chaperones BiP1, BiP2 and BiP3 and CNX1 and CNX2 via binding to the ER stress response element (ERSE) and the plant unfolded protein response element(P-UPRE). It can also activate its own transcription. O.I. C.G. H.G.
9.7 99.1 107.6 At5g03030 831703 DNAJ heat shock N-terminal domain-containing protein F:heat shock protein binding;P:protein folding;C:unknown;OMFBPV O.I. C.G. H.G.
9.6 99.1 64.0 At2g21530 816692 forkhead-associated domain-containing protein / FHA domain-containing protein F:unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast stroma, chloroplast;BPOAM O.I. C.G. H.G.
9.5 99.1 104.4 At1g54030 841841 GDSL-motif lipase, putative F:lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:vacuole;PBOFM O.I. C.G. H.G.
9.3 99.1 37.4 At1g31690 840056 amine oxidase/ copper ion binding / quinone binding F:quinone binding, amine oxidase activity, copper ion binding;P:cellular amine metabolic process;C:endomembrane system;FBMOPA O.I. C.G. H.G.
9.2 99.1 119.2 At3g60420 825213 - F:unknown;P:unknown;C:cellular_component unknown;OBFPM O.I. C.G. H.G.
8.9 99.0 9.2 At4g13410 826972 ATCSLA15 encodes a gene similar to cellulose synthase O.I. C.G. H.G.
8.8 99.0 72.6 At5g39050 833897 transferase/ transferase, transferring acyl groups other than amino-acyl groups F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFO O.I. C.G. H.G.
8.6 99.0 14.5 At1g72280 843560 AERO1 (Arabidopsis endoplasmic reticulum oxidoreductins 1) endoplasmic reticulum oxidoreductin O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
56.0	99.8	130.9	At2g24210	816955	TPS10 (terpene synthase 10)	F:myrcene synthase activity, (E)-beta-ocimene synthase activity;P:response to jasmonic acid stimulus, monoterpenoid biosynthetic process, response to wounding;C:unknown;PO	O.I.	C.G.	H.G.
52.6	99.8	171.3	At1g52410	841671	TSA1 (TSK-ASSOCIATING PROTEIN 1)	Contains a novel calcium-binding repeat sequence. Binds TSK in vitro. Localizes to small cytoplasmic vesicles in interphase cells. In cells synchronized for cell division, TSA1 and TSK relocalize to ends of spindle microtubules that are ahead of separating chromatids during metaphase and anaphase of mitosis. May be involved in mitosis together with TSK. Expressed preferentially in the flower and shoot apex. Can form multimers.	O.I.	C.G.	H.G.
50.3	99.8	178.1	At5g43450	834365	2-oxoglutarate-dependent dioxygenase, putative	encodes a protein whose sequence is similar to ACC oxidase	O.I.	C.G.	H.G.
43.1	99.8	158.0	At5g07010	830592	ST2A (SULFOTRANSFERASE 2A)	Encodes a sulfotransferase that acts specifically on 11- and 12-hydroxyjasmonic acid. Transcript levels for this enzyme are increased by treatments with jasmonic acid (JA), 12-hydroxyJA, JA-isoleucine, and 12-oxyphytodienoic acid (a JA precursor).	O.I.	C.G.	H.G.
40.0	99.8	188.9	At2g03760	814903	ST	Encodes a brassinosteroid sulfotransferase. In vitro experiements show that this enzyme has a preference for 24-epibrassinosteroids, particularly 24-epicathasterone, but does not act on castasterone and brassinolide. It is differentially expressed during development, being more abundant in young seedlings and actively growing cell cultures. Expression is induced in response to salicylic acid and methyl jasmonate and bacterial pathogens.	O.I.	C.G.	H.G.
36.5	99.7	77.2	At2g04050	814939	MATE efflux family protein	F:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFMA	O.I.	C.G.	H.G.
32.9	99.7	163.0	At3g51450	824308	strictosidine synthase family protein	F:strictosidine synthase activity;P:alkaloid biosynthetic process, biosynthetic process;C:endomembrane system;BPMOAF	O.I.	C.G.	H.G.
32.6	99.7	230.3	At3g28220	822448	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	F:molecular_function unknown;P:response to salt stress;C:vacuole, chloroplast envelope;PMO	O.I.	C.G.	H.G.
32.1	99.7	82.7	At2g20340	816553	tyrosine decarboxylase, putative	F:pyridoxal phosphate binding, carboxy-lyase activity, catalytic activity, tyrosine decarboxylase activity;P:amino acid metabolic process, response to wounding;C:cellular_component unknown;MBOFPAV	O.I.	C.G.	H.G.
30.4	99.7	63.3	At3g61630	825336	CRF6 (CYTOKININ RESPONSE FACTOR 6)	CRF6 encodes one of the six cytokinin response factors. CRF5 belongs to the AP2/ERF superfamily of the transcriptional factors. CRF proteins rapidly relocalize to the nucleus in response to cytokinin. Analysis of loos-of-function mutants revealed that the CRFs function redundantly to regulate the development of embryos, cotyledons and leaves.	O.I.	C.G.	H.G.
29.1	99.7	89.0	At2g21640	816702	-	Encodes a protein of unknown function that is a marker for oxidative stress response.	O.I.	C.G.	H.G.
28.2	99.7	206.6	At2g39030	818489	GCN5-related N-acetyltransferase (GNAT) family protein	F:N-acetyltransferase activity;P:metabolic process;C:cellular_component unknown;BOMFPA	O.I.	C.G.	H.G.
28.0	99.7	155.1	At5g06870	830578	PGIP2 (POLYGALACTURONASE INHIBITING PROTEIN 2)	Encodes a polygalacturonase inhibiting protein involved in plant defense response. PGIPs inhibit the activity of pectin degrading enzymes such as those produced by fungal pathogens. PGIP2 is induced by fungal infection and methyl jasmonate.	O.I.	C.G.	H.G.
26.3	99.7	79.4	At5g62480	836368	ATGSTU9 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 9)	Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).	O.I.	C.G.	H.G.
26.1	99.7	132.0	At1g51760	841602	IAR3 (IAA-ALANINE RESISTANT 3)	encodes a member of the six Arabidopsis IAA-amino acid conjugate hydrolase subfamily and conjugates and conjugates IAA-Ala in vitro. Gene is expressed most strongly in roots, stems, and flowers.	O.I.	C.G.	H.G.
25.8	99.7	104.5	At4g17260	827440	L-lactate dehydrogenase, putative	F:in 6 functions;P:response to salt stress, response to abscisic acid stimulus;C:plasma membrane;BOMFPA	O.I.	C.G.	H.G.
25.5	99.7	76.2	At1g32940	840188	SBT3.5	F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:apoplast;BPOAFM	O.I.	C.G.	H.G.
24.8	99.6	47.4	At1g03660	839033	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
22.9	99.6	172.3	At4g08870	826458	arginase, putative	Encodes one of the two arginase in the genome. Gene expression is enhanced by methyl jasmonate treatment.	O.I.	C.G.	H.G.
22.0	99.6	38.6	At5g19100	832030	extracellular dermal glycoprotein-related / EDGP-related	F:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;P	O.I.	C.G.	H.G.
21.8	99.6	134.1	At2g47000	819314	ABCB4 (ATP BINDING CASSETTE SUBFAMILY B4)	Multidrug resistance P-glycoprotein (MDR/PGP) subfamily of ABC transporters. Functions in the basipetal redirection of auxin from the root tip. Exhibits apolar plasma membrane localization in the root cap and polar localization in tissues above.	O.I.	C.G.	H.G.
19.9	99.6	68.7	At1g36280	840534	adenylosuccinate lyase, putative / adenylosuccinase, putative	F:N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity, catalytic activity;P:purine ribonucleotide biosynthetic process, purine base biosynthetic process, IMP biosynthetic process;C:chloroplast;BOMFAP	O.I.	C.G.	H.G.
19.8	99.6	38.9	At1g32870	840181	ANAC13 (Arabidopsis thaliana NAC domain protein 13)	F:transcription factor activity;P:multicellular organismal development, response to UV-B, response to red light;C:cellular_component unknown;POMF	O.I.	C.G.	H.G.
19.6	99.6	61.6	At3g48850	824046	mitochondrial phosphate transporter, putative	F:binding;P:transport;C:mitochondrial inner membrane, chloroplast, membrane;MFPO	O.I.	C.G.	H.G.
18.8	99.5	132.2	At4g37370	829891	CYP81D8	member of CYP81D	O.I.	C.G.	H.G.
18.3	99.5	185.5	At2g41730	818772	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
18.3	99.5	24.5	At4g02360	827767	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO	O.I.	C.G.	H.G.
17.9	99.5	118.8	At1g05680	837075	UDP-glucoronosyl/UDP-glucosyl transferase family protein	F:transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity, UDP-glucosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBVOF	O.I.	C.G.	H.G.
17.9	99.5	17.3	At5g61290	836250	flavin-containing monooxygenase family protein / FMO family protein	F:NADP or NADPH binding, monooxygenase activity, FAD binding, flavin-containing monooxygenase activity;P:unknown;C:cellular_component unknown;BOMFPA	O.I.	C.G.	H.G.
17.7	99.5	80.1	At4g27585	828868	band 7 family protein	F:unknown;P:biological_process unknown;C:mitochondrion, plastid, membrane;BOMPAFV	O.I.	C.G.	H.G.
17.7	99.5	79.7	At1g13470	837907	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
16.9	99.5	34.8	At1g74870	843826	protein binding / zinc ion binding	F:protein binding, zinc ion binding;P:unknown;C:unknown;MFPOB	O.I.	C.G.	H.G.
16.8	99.5	80.5	At1g78490	844185	CYP708A3	member of CYP708A	O.I.	C.G.	H.G.
16.2	99.5	27.7	At1g51920	841620	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
16.1	99.5	26.9	At4g39740	830129	electron transport SCO1/SenC family protein	F:molecular_function unknown;P:unknown;C:unknown;BOMFPA	O.I.	C.G.	H.G.
16.0	99.5	228.1	At1g52030	841632	MBP2 (MYROSINASE-BINDING PROTEIN 2)	Similar to myrosinase binding proteins which may be involved in metabolizing glucosinolates and forming defense compounds to protect against herbivory. Also similar to lectins and other agglutinating factors. Expressed only in flowers.	O.I.	C.G.	H.G.
15.8	99.5	142.1	At5g24420	832513	glucosamine/galactosamine-6-phosphate isomerase-related	F:6-phosphogluconolactonase activity;P:pentose-phosphate shunt, pentose-phosphate shunt, oxidative branch, carbohydrate metabolic process;C:cellular_component unknown;BOMFP	O.I.	C.G.	H.G.
15.7	99.5	58.4	At3g55130	824679	ATWBC19 (White-Brown Complex homolog 19)	Encodes a vacuole localized protein of the ABC transporter White-Brown Complex (WBC) family. When overexpressed in planta, confers resistance to kanamycin.	O.I.	C.G.	H.G.
15.6	99.5	234.5	At5g42650	834273	AOS (ALLENE OXIDE SYNTHASE)	Encodes a member of the cytochrome p450 CYP74 gene family that functions as an allene oxide synthase. This enzyme catalyzes dehydration of the hydroperoxide to an unstable allene oxide in the JA biosynthetic pathway. It shows a dual catalytic activity, the major one being a 13-AOS but also expressing a 9-AOS activity.	O.I.	C.G.	H.G.
15.3	99.4	326.3	At3g16470	820895	JR1	JA-responsive gene	O.I.	C.G.	H.G.
15.0	99.4	147.1	At3g48640	824024	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
14.5	99.4	63.1	At2g39330	818518	JAL23 (JACALIN-RELATED LECTIN 23)	F:molecular_function unknown;P:biological_process unknown;C:vacuole;POF	O.I.	C.G.	H.G.
14.2	99.4	69.6	At1g32350	840127	AOX1D (alternative oxidase 1D)	F:alternative oxidase activity;P:oxidation reduction, response to cyclopentenone;C:mitochondrial envelope, mitochondrion;OPFBM	O.I.	C.G.	H.G.
14.2	99.4	50.4	At4g17470	827458	palmitoyl protein thioesterase family protein	F:palmitoyl-(protein) hydrolase activity;P:protein modification process;C:endomembrane system;MPFO	O.I.	C.G.	H.G.
14.2	99.4	30.1	At3g48350	823993	cysteine proteinase, putative	F:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis;C:endomembrane system;MOPVBAF	O.I.	C.G.	H.G.
14.0	99.4	18.6	At2g35480	818113	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P	O.I.	C.G.	H.G.
13.4	99.4	313.9	At4g23600	828460	CORI3 (CORONATINE INDUCED 1)	Encodes cystine lyase which is expected to be involved in amino acid metabolism, providing the plant with cysteine and the generation of precursors of ethylene biosynthesis. mRNA levels are elevated in response to wounding.	O.I.	C.G.	H.G.
13.3	99.4	54.8	At4g21900	828279	antiporter/ drug transporter/ transporter	F:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport;C:membrane;MPO	O.I.	C.G.	H.G.
13.3	99.4	34.3	At5g05190	830401	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPV	O.I.	C.G.	H.G.
13.1	99.4	173.2	At1g76790	844013	O-methyltransferase family 2 protein	F:methyltransferase activity, O-methyltransferase activity, protein dimerization activity;P:unknown;C:cytosol;PBFOM	O.I.	C.G.	H.G.
13.1	99.4	24.6	At3g50760	824240	GATL2 (Galacturonosyltransferase-like 2)	Encodes a protein with putative galacturonosyltransferase activity.	O.I.	C.G.	H.G.
12.9	99.3	15.7	At1g52770	841710	phototropic-responsive NPH3 family protein	F:signal transducer activity;P:response to light stimulus;C:cellular_component unknown;P	O.I.	C.G.	H.G.
12.7	99.3	205.6	At3g22370	821806	AOX1A (ALTERNATIVE OXIDASE 1A)	Encodes an isoform of alternative oxidase that is expressed in rosettes, flowers, and root. The alternative oxidase of plant mitochondria transfers electrons from the ubiquinone pool to oxygen without energy conservations. It is regulated through transcriptional control and by pyruvate. Plays a role in shoot acclimation to low temperature. Also is capable of ameliorating reactive oxygen species production when the cytochrome pathway is inhibited.	O.I.	C.G.	H.G.
12.7	99.3	26.6	At4g13950	827029	RALFL31 (ralf-like 31)	Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.	O.I.	C.G.	H.G.
12.6	99.3	195.8	At1g19670	838554	ATCLH1 (ARABIDOPSIS THALIANA CORONATINE-INDUCED PROTEIN 1)	Chlorophyllase is the first enzyme involved in chlorophyll degradation. It catalyzes the hydrolysis of the ester bond to yield chlorophyllide and phytol. AtCLH1 lacks a typical signal sequence for the chloroplast. Its expression is induced rapidly by methyljasmonate, a known promoter of senescence and chlorophyll degradation.	O.I.	C.G.	H.G.
12.6	99.3	20.7	At1g60270	3767579	-	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
12.5	99.3	37.2	At4g16770	827383	iron ion binding / oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity, iron ion binding;P:flavonoid biosynthetic process;C:peroxisome;POBFM	O.I.	C.G.	H.G.
12.4	99.3	43.5	At1g53035	841737	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
12.4	99.3	16.3	At4g36830	829836	GNS1/SUR4 membrane family protein	F:molecular_function unknown;P:biological_process unknown;C:integral to membrane;PFMOV	O.I.	C.G.	H.G.
12.2	99.3	15.1	At1g24090	839020	RNase H domain-containing protein	F:ribonuclease H activity, nucleic acid binding;P:biological_process unknown;C:unknown;PBOAM	O.I.	C.G.	H.G.
12.0	99.3	33.3	At5g41400	834142	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFVB	O.I.	C.G.	H.G.
11.8	99.3	43.7	At5g65280	836653	GCL1 (GCR2-LIKE 1)	Encodes a protein with reported similarity to GCR2 a putative G protein coupled receptor thought to be an ABA receptor. Loss of function mutations in GCL1 show no ABA response defects based on assays of seed germination and seedling development.GCL1 also has similarity to LANCL1 and LANCL2, human homologs of bacterial lanthionine synthetase.	O.I.	C.G.	H.G.
11.3	99.3	63.1	At4g18880	827622	AT-HSFA4A	member of Heat Stress Transcription Factor (Hsf) family	O.I.	C.G.	H.G.
10.7	99.2	150.4	At2g43550	818957	trypsin inhibitor, putative	Encodes a defensin-like (DEFL) family protein.	O.I.	C.G.	H.G.
10.6	99.2	68.4	At1g64900	842798	CYP89A2 (CYTOCHROME P450 89A2)	Encodes cytochrome P450 (CYP89A2).	O.I.	C.G.	H.G.
10.4	99.2	68.0	At3g55450	824711	protein kinase, putative	F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA	O.I.	C.G.	H.G.
10.4	99.2	30.3	At2g20720	816600	pentatricopeptide (PPR) repeat-containing protein	F:unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
10.1	99.2	70.7	At1g30250	839905	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
10.1	99.2	21.8	At5g44050	834428	MATE efflux family protein	F:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFMA	O.I.	C.G.	H.G.
9.9	99.1	54.0	At2g34810	818046	FAD-binding domain-containing protein	F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:response to jasmonic acid stimulus, response to wounding;C:endomembrane system;FBPOAM	O.I.	C.G.	H.G.
9.9	99.1	21.1	At4g15260	827192	UDP-glucoronosyl/UDP-glucosyl transferase family protein	F:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBOVF	O.I.	C.G.	H.G.
9.9	99.1	18.2	At4g11370	826739	RHA1A	Encodes a putative RING-H2 finger protein RHA1a.	O.I.	C.G.	H.G.
9.8	99.1	44.5	At4g11890	826796	protein kinase family protein	F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MPOBFVA	O.I.	C.G.	H.G.
9.7	99.1	191.8	At3g55620	824728	emb1624 (embryo defective 1624)	F:ribosome binding, translation initiation factor activity;P:embryonic development ending in seed dormancy, translational initiation;C:nucleolus;AOMFP	O.I.	C.G.	H.G.
9.7	99.1	128.0	At1g42990	840897	ATBZIP60 (BASIC REGION/LEUCINE ZIPPER MOTIF 60)	AtbZIP60 consists of a bZIP DNA binding domain followed by a putative transmembrane domain. GFP fusions containing the first 260 amino acids (AtbZIP60deltaC) are nuclear-localized. AtbZIP60 is upregulated by the addition of tunicamycin (ER stress response inductor), DTT (inhibitor of disulfide bond formation) and azetin-2-carboxylate (proline analog perturbing protein structure). Upon ER stress the protein is proteolyzed and the soluble part is translocalized into the nucleus. AtbZIP60deltaC can activate the promoters of the ER chaperones BiP1, BiP2 and BiP3 and CNX1 and CNX2 via binding to the ER stress response element (ERSE) and the plant unfolded protein response element(P-UPRE). It can also activate its own transcription.	O.I.	C.G.	H.G.
9.7	99.1	107.6	At5g03030	831703	DNAJ heat shock N-terminal domain-containing protein	F:heat shock protein binding;P:protein folding;C:unknown;OMFBPV	O.I.	C.G.	H.G.
9.6	99.1	64.0	At2g21530	816692	forkhead-associated domain-containing protein / FHA domain-containing protein	F:unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast stroma, chloroplast;BPOAM	O.I.	C.G.	H.G.
9.5	99.1	104.4	At1g54030	841841	GDSL-motif lipase, putative	F:lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:vacuole;PBOFM	O.I.	C.G.	H.G.
9.3	99.1	37.4	At1g31690	840056	amine oxidase/ copper ion binding / quinone binding	F:quinone binding, amine oxidase activity, copper ion binding;P:cellular amine metabolic process;C:endomembrane system;FBMOPA	O.I.	C.G.	H.G.
9.2	99.1	119.2	At3g60420	825213	-	F:unknown;P:unknown;C:cellular_component unknown;OBFPM	O.I.	C.G.	H.G.
8.9	99.0	9.2	At4g13410	826972	ATCSLA15	encodes a gene similar to cellulose synthase	O.I.	C.G.	H.G.
8.8	99.0	72.6	At5g39050	833897	transferase/ transferase, transferring acyl groups other than amino-acyl groups	F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFO	O.I.	C.G.	H.G.
8.6	99.0	14.5	At1g72280	843560	AERO1 (Arabidopsis endoplasmic reticulum oxidoreductins 1)	endoplasmic reticulum oxidoreductin	O.I.	C.G.	H.G.

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GSM ID	GSM134394
Assay name	St.Clair_1-91_267b_Tsu-1_0.02%-silwet_Rep1_ATH1
GSE experiment	GSE5755: Expression Level Polymorphism Project (ELP) - Tsu-1

Microarray experiments to specifically-expressed genes

GSM ID GSM134394 Assay name St.Clair_1-91_267b_Tsu-1_0.02%-silwet_Rep1_ATH1 GSE experiment GSE5755: Expression Level Polymorphism Project (ELP) - Tsu-1

GSM ID GSM134394

Assay name St.Clair_1-91_267b_Tsu-1_0.02%-silwet_Rep1_ATH1

GSE experiment GSE5755: Expression Level Polymorphism Project (ELP) - Tsu-1