CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM134391

Assay name St.Clair_1-52_279b_Est_0.30mM-SA-in-0.02%-silwet_Rep1_ATH1

GSE experiment GSE5754: Expression Level Polymorphism Project (ELP) - Est

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
49.5 99.8 166.2 At1g52410 841671 TSA1 (TSK-ASSOCIATING PROTEIN 1) Contains a novel calcium-binding repeat sequence. Binds TSK in vitro. Localizes to small cytoplasmic vesicles in interphase cells. In cells synchronized for cell division, TSA1 and TSK relocalize to ends of spindle microtubules that are ahead of separating chromatids during metaphase and anaphase of mitosis. May be involved in mitosis together with TSK. Expressed preferentially in the flower and shoot apex. Can form multimers. O.I. C.G. H.G.
36.6 99.7 87.1 At1g02300 839576 cathepsin B-like cysteine protease, putative F:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis, regulation of catalytic activity;C:endomembrane system;MOPVBAF O.I. C.G. H.G.
31.8 99.7 29.9 At5g55420 835635 - Encodes a Protease inhibitor/seed storage/LTP family protein [pseudogene] O.I. C.G. H.G.
28.0 99.7 125.7 At4g16146 827304 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
27.2 99.7 64.6 At1g53035 841737 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
26.5 99.7 70.2 At2g39920 818579 acid phosphatase class B family protein F:acid phosphatase activity;P:response to cadmium ion;C:cellular_component unknown;PBO O.I. C.G. H.G.
22.8 99.6 90.4 At1g12845 837841 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
22.7 99.6 21.1 At2g01400 814668 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
18.5 99.5 34.0 At1g78450 844181 SOUL heme-binding family protein F:binding;P:biological_process unknown;C:endomembrane system;OMPBA O.I. C.G. H.G.
18.2 99.5 88.3 At2g21530 816692 forkhead-associated domain-containing protein / FHA domain-containing protein F:unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast stroma, chloroplast;BPOAM O.I. C.G. H.G.
17.6 99.5 87.1 At4g19390 827680 - F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BOPA O.I. C.G. H.G.
16.0 99.5 96.4 At1g65190 842826 protein kinase family protein F:protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;PMOBFV O.I. C.G. H.G.
16.0 99.5 21.3 At4g01130 828207 acetylesterase, putative F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOM O.I. C.G. H.G.
15.8 99.5 198.9 At2g43570 818959 chitinase, putative F:chitin binding, chitinase activity;P:cell wall macromolecule catabolic process;C:apoplast, plant-type cell wall;PBFOMV O.I. C.G. H.G.
15.6 99.5 51.6 At1g54020 841840 myrosinase-associated protein, putative F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:vacuole;PBM O.I. C.G. H.G.
14.8 99.4 51.5 At1g26650 839205 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
14.6 99.4 154.2 At3g28220 822448 meprin and TRAF homology domain-containing protein / MATH domain-containing protein F:molecular_function unknown;P:response to salt stress;C:vacuole, chloroplast envelope;PMO O.I. C.G. H.G.
14.6 99.4 84.6 At5g65840 836713 - F:molecular_function unknown;P:biological_process unknown;C:chloroplast stroma, chloroplast;PMBOF O.I. C.G. H.G.
14.5 99.4 103.3 At4g03050 828104 AOP3 Transcriptional silent in leaf tissues of ecotype Col. The transcribed allele in ecotype Ler encodes a 2-oxoglutarate-dependent dioxygenase which is involved in glucosinolate biosynthesis. The natural variation in this locus explains the diversification of hydroxyalkyl glucosinolates among different ecotypes of Arabidopsis. O.I. C.G. H.G.
14.2 99.4 71.4 At1g62430 842541 ATCDS1 Encodes a CDP-diacylglycerol synthase, involved in phospholipid biosynthesis. O.I. C.G. H.G.
13.6 99.4 27.2 At5g36120 833608 CCB3 (COFACTOR ASSEMBLY, COMPLEX C (B6F),) F:molecular_function unknown;P:cytochrome b6f complex assembly;C:chloroplast thylakoid membrane, chloroplast;BOP O.I. C.G. H.G.
13.3 99.4 35.0 At5g41400 834142 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFVB O.I. C.G. H.G.
13.2 99.4 14.8 At5g61290 836250 flavin-containing monooxygenase family protein / FMO family protein F:NADP or NADPH binding, monooxygenase activity, FAD binding, flavin-containing monooxygenase activity;P:unknown;C:cellular_component unknown;BOMFPA O.I. C.G. H.G.
13.0 99.4 43.2 At1g78995 844240 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
12.9 99.3 16.4 At1g69720 843308 ho3 (HEME OXYGENASE 3) Encodes a member (HO3) of the heme oxygenase family. O.I. C.G. H.G.
12.5 99.3 47.1 At3g27210 822340 unknown protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:plasma membrane;MPOBF O.I. C.G. H.G.
12.3 99.3 75.5 At1g78600 844196 LZF1 (LIGHT-REGULATED ZINC FINGER PROTEIN 1) F:transcription factor activity, zinc ion binding;P:chlorophyll biosynthetic process, chloroplast organization, anthocyanin biosynthetic process, regulation of photomorphogenesis, regulation of transcription;C:nuclear speck;POM O.I. C.G. H.G.
12.3 99.3 10.8 At4g13410 826972 ATCSLA15 encodes a gene similar to cellulose synthase O.I. C.G. H.G.
12.2 99.3 50.0 At4g26130 828719 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMOF O.I. C.G. H.G.
12.1 99.3 64.3 At2g41180 818717 sigA-binding protein-related F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
12.0 99.3 77.3 At1g30250 839905 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
11.8 99.3 349.1 At5g59320 836051 LTP3 (LIPID TRANSFER PROTEIN 3) Predicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15. O.I. C.G. H.G.
11.8 99.3 123.4 At2g21130 816648 peptidyl-prolyl cis-trans isomerase / cyclophilin (CYP2) / rotamase F:peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:plasma membrane;OBMFPAV O.I. C.G. H.G.
11.7 99.3 180.4 At1g19960 838585 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOB O.I. C.G. H.G.
11.7 99.3 80.2 At1g64360 842743 unknown protein F:molecular_function unknown;P:response to oxidative stress;C:cellular_component unknown;P O.I. C.G. H.G.
11.7 99.3 29.7 At4g03070 828100 AOP1 Encodes a possible 2-oxoglutarate-dependent dioxygenase that is involved in glucosinolate biosynthesis. The gene is expressed in all ecotypes examined but the enzymatic activity has not been determined experimentally. In Col, there is one copy of this gene (aka AOP1.1) but Ler contains two copies, AOP1.1 and a tightly linked AOP1.2. O.I. C.G. H.G.
11.4 99.3 43.1 At5g11150 830984 ATVAMP713 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 713) Member of Synaptobrevin-like AtVAMP7C, v-SNARE protein family. O.I. C.G. H.G.
11.2 99.2 43.7 At1g76020 843933 - F:unknown;P:biological_process unknown;C:cell wall, vacuole;BPOMF O.I. C.G. H.G.
11.2 99.2 12.3 At1g53100 841744 acetylglucosaminyltransferase F:acetylglucosaminyltransferase activity;P:carbohydrate biosynthetic process;C:membrane;MPBVO O.I. C.G. H.G.
11.2 99.2 8.8 At5g55810 835675 AtNMNAT (A. thaliana nicotinate/nicotinamide mononucleotide adenyltransferase) encodes a bi-functional enzyme that expresses both nicotinamide-nucleotide adenylyltransferase (2.7.7.1) and nicotinate-nucleotide adenylyltransferase (2.7.7.18)activity. O.I. C.G. H.G.
10.8 99.2 127.7 At2g39030 818489 GCN5-related N-acetyltransferase (GNAT) family protein F:N-acetyltransferase activity;P:metabolic process;C:cellular_component unknown;BOMFPA O.I. C.G. H.G.
10.7 99.2 108.8 At4g04330 825753 unknown protein F:unknown;P:unknown;C:unknown;BPO O.I. C.G. H.G.
10.7 99.2 58.1 At2g01620 814691 MEE11 (maternal effect embryo arrest 11) F:unknown;P:embryonic development ending in seed dormancy;C:unknown;MPO O.I. C.G. H.G.
10.5 99.2 33.9 At1g74680 843807 exostosin family protein F:catalytic activity;P:biological_process unknown;C:endomembrane system, membrane;POMBF O.I. C.G. H.G.
10.3 99.2 86.9 At1g07280 837239 binding F:binding;P:biological_process unknown;C:chloroplast;PBOAFM O.I. C.G. H.G.
10.3 99.2 31.4 At5g43440 834364 2-oxoglutarate-dependent dioxygenase, putative encodes a protein whose sequence is similar to ACC oxidase O.I. C.G. H.G.
10.1 99.2 18.5 At2g24160 3768109 - F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
10.0 99.2 45.6 At1g31550 840045 GDSL-motif lipase, putative F:lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:vacuole;PBFOM O.I. C.G. H.G.
10.0 99.2 27.6 At4g03410 827932 peroxisomal membrane protein-related F:molecular_function unknown;P:biological_process unknown;C:integral to membrane, chloroplast;MFPO O.I. C.G. H.G.
9.9 99.1 70.9 At1g76960 844031 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
9.9 99.1 21.0 At5g52320 835308 CYP96A4 member of CYP96A O.I. C.G. H.G.
9.8 99.1 37.8 At2g03310 814860 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
9.7 99.1 84.7 At1g74520 843793 ATHVA22A Part of the AtHVA22a family. Protein expression is ABA- and stress-inducible. O.I. C.G. H.G.
9.7 99.1 82.0 At4g26670 828774 mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein F:protein transporter activity, P-P-bond-hydrolysis-driven protein transmembrane transporter activity;P:protein transport;C:chloroplast, mitochondrial inner membrane presequence translocase complex, chloroplast envelope;MFPO O.I. C.G. H.G.
9.7 99.1 66.4 At2g06925 815261 PLA2-ALPHA Encodes a secretory phospholipase A2 enzyme, which specifically hydrolyzes the sn-2 position of phospholipids. The enzyme has a preference towards linoleoyl acyl chain over palmitoyl acyl chain. It also has a slight preference for phosphatidylcholine over phosphatidylethanolamine. O.I. C.G. H.G.
9.7 99.1 33.1 At1g07050 837216 CONSTANS-like protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POF O.I. C.G. H.G.
9.7 99.1 26.7 At1g48330 841253 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
9.7 99.1 24.2 At5g48250 834878 zinc finger (B-box type) family protein F:transcription factor activity, zinc ion binding;P:unknown;C:plasma membrane;POM O.I. C.G. H.G.
9.6 99.1 259.1 At3g16470 820895 JR1 JA-responsive gene O.I. C.G. H.G.
9.5 99.1 87.7 At3g51450 824308 strictosidine synthase family protein F:strictosidine synthase activity;P:alkaloid biosynthetic process, biosynthetic process;C:endomembrane system;BPMOAF O.I. C.G. H.G.
9.5 99.1 30.4 At3g01660 821098 methyltransferase F:methyltransferase activity;P:metabolic process;C:cellular_component unknown;BOPMAF O.I. C.G. H.G.
9.4 99.1 44.5 At4g22380 828333 ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein F:RNA binding;P:ribosome biogenesis;C:nucleolus;MOAFPB O.I. C.G. H.G.
9.3 99.1 110.3 At1g28140 839708 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BPMO O.I. C.G. H.G.
9.3 99.1 61.5 At1g22070 838812 TGA3 Encodes a transcription factor. Like other TGAla-related factors, TGA3 has a highly conserved bZIP region and exhibits similar DNA-binding properties. O.I. C.G. H.G.
9.2 99.1 257.6 At5g59310 836050 LTP4 (LIPID TRANSFER PROTEIN 4) Encodes a member of the lipid transfer protein family. Proteins of this family are generally small (~9 kD), basic, expressed abundantly and contain eight Cys residues. The proteins can bind fatty acids and acylCoA esters and can transfer several different phospholipids. They are localized to the cell wall. The mRNA is present in flowers and siliques, and is strongly up-regulated by abscisic acid. Predicted to be a member of PR-14 pathogenesis-related protein family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15. O.I. C.G. H.G.
9.2 99.1 61.3 At5g55990 835697 CBL2 (CALCINEURIN B-LIKE 2) Encodes a member of the Arabidopsis CBL (Calcineurin B-like Calcium Sensor) protein family. O.I. C.G. H.G.
9.2 99.1 30.5 At1g65420 842853 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO O.I. C.G. H.G.
9.2 99.1 30.4 At5g57630 835868 CIPK21 (CBL-interacting protein kinase 21) CBL-interacting protein kinase O.I. C.G. H.G.
9.1 99.1 85.5 At2g40750 818670 WRKY54 member of WRKY Transcription Factor; Group III O.I. C.G. H.G.
9.1 99.1 56.8 At4g34920 829644 1-phosphatidylinositol phosphodiesterase-related F:phospholipase C activity, phosphoric diester hydrolase activity;P:triglyceride biosynthetic process, intracellular signaling cascade, lipid metabolic process, phospholipid biosynthetic process;C:cellular_component unknown;BMFPO O.I. C.G. H.G.
9.1 99.1 8.9 At1g17665 838343 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OPMF O.I. C.G. H.G.
9.0 99.1 187.4 At5g55450 835638 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:response to other organism, lipid transport;C:endomembrane system;P O.I. C.G. H.G.
9.0 99.1 67.8 At2g37870 818363 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P O.I. C.G. H.G.
9.0 99.1 46.1 At1g36280 840534 adenylosuccinate lyase, putative / adenylosuccinase, putative F:N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity, catalytic activity;P:purine ribonucleotide biosynthetic process, purine base biosynthetic process, IMP biosynthetic process;C:chloroplast;BOMFAP O.I. C.G. H.G.
9.0 99.1 34.2 At3g11090 820280 LBD21 (LOB DOMAIN-CONTAINING PROTEIN 21) F:unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
9.0 99.1 29.1 At2g29320 817481 tropinone reductase, putative / tropine dehydrogenase, putative F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAV O.I. C.G. H.G.
8.9 99.0 245.9 At3g57260 824893 BGL2 (BETA-1,3-GLUCANASE 2) beta 1,3-glucanase O.I. C.G. H.G.
8.9 99.0 39.6 At2g18950 816412 HPT1 (HOMOGENTISATE PHYTYLTRANSFERASE 1) Encodes homogentisate phytyltransferase involved in tocopherol biosynthesis. Has impact on seed longevity and plays a role in the adaptation to low temperature stress, notably phloem loading. O.I. C.G. H.G.
8.8 99.0 180.3 At5g10760 830943 aspartyl protease family protein F:aspartic-type endopeptidase activity;P:proteolysis;C:apoplast;PMFO O.I. C.G. H.G.
8.8 99.0 43.5 At4g13140 - - O.I. C.G. H.G.
8.8 99.0 34.4 At3g60520 825223 unknown protein F:unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
8.7 99.0 18.2 At4g17570 827474 zinc finger (GATA type) family protein F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus;PFOMB O.I. C.G. H.G.
8.7 99.0 10.1 At2g36470 818221 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFMO O.I. C.G. H.G.
8.6 99.0 101.0 At3g52180 824383 SEX4 (STARCH-EXCESS 4) Encodes a plant-specific protein phosphatase that contains a protein tyrosine phosphatase (PTP) catalytic domain and a kinase interaction sequence (KIS) domain. This protein interacts with the plant SnRK AKIN11. Binds starch. Localized in the chloroplast. O.I. C.G. H.G.
8.6 99.0 57.7 At1g78490 844185 CYP708A3 member of CYP708A O.I. C.G. H.G.
8.6 99.0 57.0 At4g10500 826642 oxidoreductase, 2OG-Fe(II) oxygenase family protein F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity;P:secondary metabolic process;C:unknown;POBFM O.I. C.G. H.G.
8.6 99.0 35.9 At2g38790 818461 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
8.6 99.0 27.9 At5g18840 832002 sugar transporter, putative F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BMFPOA O.I. C.G. H.G.
8.6 99.0 23.2 At3g01170 820469 structural constituent of ribosome F:structural constituent of ribosome;P:translation;C:ribosome, intracellular, chloroplast;P O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
49.5	99.8	166.2	At1g52410	841671	TSA1 (TSK-ASSOCIATING PROTEIN 1)	Contains a novel calcium-binding repeat sequence. Binds TSK in vitro. Localizes to small cytoplasmic vesicles in interphase cells. In cells synchronized for cell division, TSA1 and TSK relocalize to ends of spindle microtubules that are ahead of separating chromatids during metaphase and anaphase of mitosis. May be involved in mitosis together with TSK. Expressed preferentially in the flower and shoot apex. Can form multimers.	O.I.	C.G.	H.G.
36.6	99.7	87.1	At1g02300	839576	cathepsin B-like cysteine protease, putative	F:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis, regulation of catalytic activity;C:endomembrane system;MOPVBAF	O.I.	C.G.	H.G.
31.8	99.7	29.9	At5g55420	835635	-	Encodes a Protease inhibitor/seed storage/LTP family protein [pseudogene]	O.I.	C.G.	H.G.
28.0	99.7	125.7	At4g16146	827304	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
27.2	99.7	64.6	At1g53035	841737	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
26.5	99.7	70.2	At2g39920	818579	acid phosphatase class B family protein	F:acid phosphatase activity;P:response to cadmium ion;C:cellular_component unknown;PBO	O.I.	C.G.	H.G.
22.8	99.6	90.4	At1g12845	837841	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
22.7	99.6	21.1	At2g01400	814668	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
18.5	99.5	34.0	At1g78450	844181	SOUL heme-binding family protein	F:binding;P:biological_process unknown;C:endomembrane system;OMPBA	O.I.	C.G.	H.G.
18.2	99.5	88.3	At2g21530	816692	forkhead-associated domain-containing protein / FHA domain-containing protein	F:unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast stroma, chloroplast;BPOAM	O.I.	C.G.	H.G.
17.6	99.5	87.1	At4g19390	827680	-	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BOPA	O.I.	C.G.	H.G.
16.0	99.5	96.4	At1g65190	842826	protein kinase family protein	F:protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;PMOBFV	O.I.	C.G.	H.G.
16.0	99.5	21.3	At4g01130	828207	acetylesterase, putative	F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOM	O.I.	C.G.	H.G.
15.8	99.5	198.9	At2g43570	818959	chitinase, putative	F:chitin binding, chitinase activity;P:cell wall macromolecule catabolic process;C:apoplast, plant-type cell wall;PBFOMV	O.I.	C.G.	H.G.
15.6	99.5	51.6	At1g54020	841840	myrosinase-associated protein, putative	F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:vacuole;PBM	O.I.	C.G.	H.G.
14.8	99.4	51.5	At1g26650	839205	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
14.6	99.4	154.2	At3g28220	822448	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	F:molecular_function unknown;P:response to salt stress;C:vacuole, chloroplast envelope;PMO	O.I.	C.G.	H.G.
14.6	99.4	84.6	At5g65840	836713	-	F:molecular_function unknown;P:biological_process unknown;C:chloroplast stroma, chloroplast;PMBOF	O.I.	C.G.	H.G.
14.5	99.4	103.3	At4g03050	828104	AOP3	Transcriptional silent in leaf tissues of ecotype Col. The transcribed allele in ecotype Ler encodes a 2-oxoglutarate-dependent dioxygenase which is involved in glucosinolate biosynthesis. The natural variation in this locus explains the diversification of hydroxyalkyl glucosinolates among different ecotypes of Arabidopsis.	O.I.	C.G.	H.G.
14.2	99.4	71.4	At1g62430	842541	ATCDS1	Encodes a CDP-diacylglycerol synthase, involved in phospholipid biosynthesis.	O.I.	C.G.	H.G.
13.6	99.4	27.2	At5g36120	833608	CCB3 (COFACTOR ASSEMBLY, COMPLEX C (B6F),)	F:molecular_function unknown;P:cytochrome b6f complex assembly;C:chloroplast thylakoid membrane, chloroplast;BOP	O.I.	C.G.	H.G.
13.3	99.4	35.0	At5g41400	834142	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFVB	O.I.	C.G.	H.G.
13.2	99.4	14.8	At5g61290	836250	flavin-containing monooxygenase family protein / FMO family protein	F:NADP or NADPH binding, monooxygenase activity, FAD binding, flavin-containing monooxygenase activity;P:unknown;C:cellular_component unknown;BOMFPA	O.I.	C.G.	H.G.
13.0	99.4	43.2	At1g78995	844240	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
12.9	99.3	16.4	At1g69720	843308	ho3 (HEME OXYGENASE 3)	Encodes a member (HO3) of the heme oxygenase family.	O.I.	C.G.	H.G.
12.5	99.3	47.1	At3g27210	822340	unknown protein	F:molecular_function unknown;P:N-terminal protein myristoylation;C:plasma membrane;MPOBF	O.I.	C.G.	H.G.
12.3	99.3	75.5	At1g78600	844196	LZF1 (LIGHT-REGULATED ZINC FINGER PROTEIN 1)	F:transcription factor activity, zinc ion binding;P:chlorophyll biosynthetic process, chloroplast organization, anthocyanin biosynthetic process, regulation of photomorphogenesis, regulation of transcription;C:nuclear speck;POM	O.I.	C.G.	H.G.
12.3	99.3	10.8	At4g13410	826972	ATCSLA15	encodes a gene similar to cellulose synthase	O.I.	C.G.	H.G.
12.2	99.3	50.0	At4g26130	828719	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMOF	O.I.	C.G.	H.G.
12.1	99.3	64.3	At2g41180	818717	sigA-binding protein-related	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
12.0	99.3	77.3	At1g30250	839905	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
11.8	99.3	349.1	At5g59320	836051	LTP3 (LIPID TRANSFER PROTEIN 3)	Predicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.	O.I.	C.G.	H.G.
11.8	99.3	123.4	At2g21130	816648	peptidyl-prolyl cis-trans isomerase / cyclophilin (CYP2) / rotamase	F:peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:plasma membrane;OBMFPAV	O.I.	C.G.	H.G.
11.7	99.3	180.4	At1g19960	838585	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOB	O.I.	C.G.	H.G.
11.7	99.3	80.2	At1g64360	842743	unknown protein	F:molecular_function unknown;P:response to oxidative stress;C:cellular_component unknown;P	O.I.	C.G.	H.G.
11.7	99.3	29.7	At4g03070	828100	AOP1	Encodes a possible 2-oxoglutarate-dependent dioxygenase that is involved in glucosinolate biosynthesis. The gene is expressed in all ecotypes examined but the enzymatic activity has not been determined experimentally. In Col, there is one copy of this gene (aka AOP1.1) but Ler contains two copies, AOP1.1 and a tightly linked AOP1.2.	O.I.	C.G.	H.G.
11.4	99.3	43.1	At5g11150	830984	ATVAMP713 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 713)	Member of Synaptobrevin-like AtVAMP7C, v-SNARE protein family.	O.I.	C.G.	H.G.
11.2	99.2	43.7	At1g76020	843933	-	F:unknown;P:biological_process unknown;C:cell wall, vacuole;BPOMF	O.I.	C.G.	H.G.
11.2	99.2	12.3	At1g53100	841744	acetylglucosaminyltransferase	F:acetylglucosaminyltransferase activity;P:carbohydrate biosynthetic process;C:membrane;MPBVO	O.I.	C.G.	H.G.
11.2	99.2	8.8	At5g55810	835675	AtNMNAT (A. thaliana nicotinate/nicotinamide mononucleotide adenyltransferase)	encodes a bi-functional enzyme that expresses both nicotinamide-nucleotide adenylyltransferase (2.7.7.1) and nicotinate-nucleotide adenylyltransferase (2.7.7.18)activity.	O.I.	C.G.	H.G.
10.8	99.2	127.7	At2g39030	818489	GCN5-related N-acetyltransferase (GNAT) family protein	F:N-acetyltransferase activity;P:metabolic process;C:cellular_component unknown;BOMFPA	O.I.	C.G.	H.G.
10.7	99.2	108.8	At4g04330	825753	unknown protein	F:unknown;P:unknown;C:unknown;BPO	O.I.	C.G.	H.G.
10.7	99.2	58.1	At2g01620	814691	MEE11 (maternal effect embryo arrest 11)	F:unknown;P:embryonic development ending in seed dormancy;C:unknown;MPO	O.I.	C.G.	H.G.
10.5	99.2	33.9	At1g74680	843807	exostosin family protein	F:catalytic activity;P:biological_process unknown;C:endomembrane system, membrane;POMBF	O.I.	C.G.	H.G.
10.3	99.2	86.9	At1g07280	837239	binding	F:binding;P:biological_process unknown;C:chloroplast;PBOAFM	O.I.	C.G.	H.G.
10.3	99.2	31.4	At5g43440	834364	2-oxoglutarate-dependent dioxygenase, putative	encodes a protein whose sequence is similar to ACC oxidase	O.I.	C.G.	H.G.
10.1	99.2	18.5	At2g24160	3768109	-	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
10.0	99.2	45.6	At1g31550	840045	GDSL-motif lipase, putative	F:lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:vacuole;PBFOM	O.I.	C.G.	H.G.
10.0	99.2	27.6	At4g03410	827932	peroxisomal membrane protein-related	F:molecular_function unknown;P:biological_process unknown;C:integral to membrane, chloroplast;MFPO	O.I.	C.G.	H.G.
9.9	99.1	70.9	At1g76960	844031	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
9.9	99.1	21.0	At5g52320	835308	CYP96A4	member of CYP96A	O.I.	C.G.	H.G.
9.8	99.1	37.8	At2g03310	814860	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
9.7	99.1	84.7	At1g74520	843793	ATHVA22A	Part of the AtHVA22a family. Protein expression is ABA- and stress-inducible.	O.I.	C.G.	H.G.
9.7	99.1	82.0	At4g26670	828774	mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein	F:protein transporter activity, P-P-bond-hydrolysis-driven protein transmembrane transporter activity;P:protein transport;C:chloroplast, mitochondrial inner membrane presequence translocase complex, chloroplast envelope;MFPO	O.I.	C.G.	H.G.
9.7	99.1	66.4	At2g06925	815261	PLA2-ALPHA	Encodes a secretory phospholipase A2 enzyme, which specifically hydrolyzes the sn-2 position of phospholipids. The enzyme has a preference towards linoleoyl acyl chain over palmitoyl acyl chain. It also has a slight preference for phosphatidylcholine over phosphatidylethanolamine.	O.I.	C.G.	H.G.
9.7	99.1	33.1	At1g07050	837216	CONSTANS-like protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POF	O.I.	C.G.	H.G.
9.7	99.1	26.7	At1g48330	841253	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
9.7	99.1	24.2	At5g48250	834878	zinc finger (B-box type) family protein	F:transcription factor activity, zinc ion binding;P:unknown;C:plasma membrane;POM	O.I.	C.G.	H.G.
9.6	99.1	259.1	At3g16470	820895	JR1	JA-responsive gene	O.I.	C.G.	H.G.
9.5	99.1	87.7	At3g51450	824308	strictosidine synthase family protein	F:strictosidine synthase activity;P:alkaloid biosynthetic process, biosynthetic process;C:endomembrane system;BPMOAF	O.I.	C.G.	H.G.
9.5	99.1	30.4	At3g01660	821098	methyltransferase	F:methyltransferase activity;P:metabolic process;C:cellular_component unknown;BOPMAF	O.I.	C.G.	H.G.
9.4	99.1	44.5	At4g22380	828333	ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	F:RNA binding;P:ribosome biogenesis;C:nucleolus;MOAFPB	O.I.	C.G.	H.G.
9.3	99.1	110.3	At1g28140	839708	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BPMO	O.I.	C.G.	H.G.
9.3	99.1	61.5	At1g22070	838812	TGA3	Encodes a transcription factor. Like other TGAla-related factors, TGA3 has a highly conserved bZIP region and exhibits similar DNA-binding properties.	O.I.	C.G.	H.G.
9.2	99.1	257.6	At5g59310	836050	LTP4 (LIPID TRANSFER PROTEIN 4)	Encodes a member of the lipid transfer protein family. Proteins of this family are generally small (~9 kD), basic, expressed abundantly and contain eight Cys residues. The proteins can bind fatty acids and acylCoA esters and can transfer several different phospholipids. They are localized to the cell wall. The mRNA is present in flowers and siliques, and is strongly up-regulated by abscisic acid. Predicted to be a member of PR-14 pathogenesis-related protein family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.	O.I.	C.G.	H.G.
9.2	99.1	61.3	At5g55990	835697	CBL2 (CALCINEURIN B-LIKE 2)	Encodes a member of the Arabidopsis CBL (Calcineurin B-like Calcium Sensor) protein family.	O.I.	C.G.	H.G.
9.2	99.1	30.5	At1g65420	842853	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO	O.I.	C.G.	H.G.
9.2	99.1	30.4	At5g57630	835868	CIPK21 (CBL-interacting protein kinase 21)	CBL-interacting protein kinase	O.I.	C.G.	H.G.
9.1	99.1	85.5	At2g40750	818670	WRKY54	member of WRKY Transcription Factor; Group III	O.I.	C.G.	H.G.
9.1	99.1	56.8	At4g34920	829644	1-phosphatidylinositol phosphodiesterase-related	F:phospholipase C activity, phosphoric diester hydrolase activity;P:triglyceride biosynthetic process, intracellular signaling cascade, lipid metabolic process, phospholipid biosynthetic process;C:cellular_component unknown;BMFPO	O.I.	C.G.	H.G.
9.1	99.1	8.9	At1g17665	838343	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OPMF	O.I.	C.G.	H.G.
9.0	99.1	187.4	At5g55450	835638	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:response to other organism, lipid transport;C:endomembrane system;P	O.I.	C.G.	H.G.
9.0	99.1	67.8	At2g37870	818363	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:endomembrane system;P	O.I.	C.G.	H.G.
9.0	99.1	46.1	At1g36280	840534	adenylosuccinate lyase, putative / adenylosuccinase, putative	F:N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity, catalytic activity;P:purine ribonucleotide biosynthetic process, purine base biosynthetic process, IMP biosynthetic process;C:chloroplast;BOMFAP	O.I.	C.G.	H.G.
9.0	99.1	34.2	At3g11090	820280	LBD21 (LOB DOMAIN-CONTAINING PROTEIN 21)	F:unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
9.0	99.1	29.1	At2g29320	817481	tropinone reductase, putative / tropine dehydrogenase, putative	F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAV	O.I.	C.G.	H.G.
8.9	99.0	245.9	At3g57260	824893	BGL2 (BETA-1,3-GLUCANASE 2)	beta 1,3-glucanase	O.I.	C.G.	H.G.
8.9	99.0	39.6	At2g18950	816412	HPT1 (HOMOGENTISATE PHYTYLTRANSFERASE 1)	Encodes homogentisate phytyltransferase involved in tocopherol biosynthesis. Has impact on seed longevity and plays a role in the adaptation to low temperature stress, notably phloem loading.	O.I.	C.G.	H.G.
8.8	99.0	180.3	At5g10760	830943	aspartyl protease family protein	F:aspartic-type endopeptidase activity;P:proteolysis;C:apoplast;PMFO	O.I.	C.G.	H.G.
8.8	99.0	43.5	At4g13140		-	-	O.I.	C.G.	H.G.
8.8	99.0	34.4	At3g60520	825223	unknown protein	F:unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
8.7	99.0	18.2	At4g17570	827474	zinc finger (GATA type) family protein	F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus;PFOMB	O.I.	C.G.	H.G.
8.7	99.0	10.1	At2g36470	818221	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFMO	O.I.	C.G.	H.G.
8.6	99.0	101.0	At3g52180	824383	SEX4 (STARCH-EXCESS 4)	Encodes a plant-specific protein phosphatase that contains a protein tyrosine phosphatase (PTP) catalytic domain and a kinase interaction sequence (KIS) domain. This protein interacts with the plant SnRK AKIN11. Binds starch. Localized in the chloroplast.	O.I.	C.G.	H.G.
8.6	99.0	57.7	At1g78490	844185	CYP708A3	member of CYP708A	O.I.	C.G.	H.G.
8.6	99.0	57.0	At4g10500	826642	oxidoreductase, 2OG-Fe(II) oxygenase family protein	F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity;P:secondary metabolic process;C:unknown;POBFM	O.I.	C.G.	H.G.
8.6	99.0	35.9	At2g38790	818461	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
8.6	99.0	27.9	At5g18840	832002	sugar transporter, putative	F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BMFPOA	O.I.	C.G.	H.G.
8.6	99.0	23.2	At3g01170	820469	structural constituent of ribosome	F:structural constituent of ribosome;P:translation;C:ribosome, intracellular, chloroplast;P	O.I.	C.G.	H.G.

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GSM ID	GSM134391
Assay name	St.Clair_1-52_279b_Est_0.30mM-SA-in-0.02%-silwet_Rep1_ATH1
GSE experiment	GSE5754: Expression Level Polymorphism Project (ELP) - Est

Microarray experiments to specifically-expressed genes

GSM ID GSM134391 Assay name St.Clair_1-52_279b_Est_0.30mM-SA-in-0.02%-silwet_Rep1_ATH1 GSE experiment GSE5754: Expression Level Polymorphism Project (ELP) - Est

GSM ID GSM134391

Assay name St.Clair_1-52_279b_Est_0.30mM-SA-in-0.02%-silwet_Rep1_ATH1

GSE experiment GSE5754: Expression Level Polymorphism Project (ELP) - Est