CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM134386

Assay name St.Clair_1-47_334_Est_0.30mM-SA-in-0.02%-silwet_Rep2_ATH1

GSE experiment GSE5754: Expression Level Polymorphism Project (ELP) - Est

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
243.2 100.0 82.7 At5g55420 835635 - Encodes a Protease inhibitor/seed storage/LTP family protein [pseudogene] O.I. C.G. H.G.
107.0 99.9 107.9 At5g66320 836764 zinc finger (GATA type) family protein Encodes GATA transcription factor gene GNC, involved in regulating carbon and nitrogen metabolism. Expression occurs in aerial tissue at an early stage of development and is inducible by nitrate. O.I. C.G. H.G.
106.6 99.9 132.6 At5g02780 831800 In2-1 protein, putative F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBMOFA O.I. C.G. H.G.
81.5 99.9 52.1 At4g11370 826739 RHA1A Encodes a putative RING-H2 finger protein RHA1a. O.I. C.G. H.G.
74.5 99.9 125.6 At1g02450 837800 NIMIN1 (NIM1-INTERACTING 1) NIMIN1 modulates PR gene expression according the following model: NPR1 forms a ternary complex with NIMIN1 and TGA factors upon SAR induction that binds to a positive regulatory cis-element of the PR-1 promoter, termed LS7. This leads to PR-1 gene induction. NIMIN1 decreases transcriptional activation, possibly through its EAR motif, which results in fine-tuning of PR-1 gene expression. O.I. C.G. H.G.
69.5 99.9 115.9 At3g48850 824046 mitochondrial phosphate transporter, putative F:binding;P:transport;C:mitochondrial inner membrane, chloroplast, membrane;MFPO O.I. C.G. H.G.
65.9 99.8 143.5 At5g51830 835258 pfkB-type carbohydrate kinase family protein F:kinase activity, ribokinase activity;P:response to cadmium ion;C:cellular_component unknown;BOPAMF O.I. C.G. H.G.
59.6 99.8 147.9 At2g30770 817628 CYP71A13 (cytochrome P450, family 71, subfamily A, polypeptide 13) putative cytochrome P450 O.I. C.G. H.G.
58.6 99.8 78.7 At4g22530 828348 embryo-abundant protein-related F:methyltransferase activity;P:metabolic process;C:cellular_component unknown;BPFMOA O.I. C.G. H.G.
55.4 99.8 124.1 At5g22300 832290 NIT4 (NITRILASE 4) encodes a nitrilase isomer. The purified enzyme shows a strong substrate specificity for beta-cyano-L-alanine, a intermediate product of the cyanide detoxification pathway. O.I. C.G. H.G.
53.0 99.8 93.2 At2g29720 817522 CTF2B Encodes CTF2B. O.I. C.G. H.G.
50.9 99.8 47.0 At1g57650 842141 - F:unknown;P:defense response;C:cellular_component unknown;PMBOFAV O.I. C.G. H.G.
46.3 99.8 203.1 At2g03760 814903 ST Encodes a brassinosteroid sulfotransferase. In vitro experiements show that this enzyme has a preference for 24-epibrassinosteroids, particularly 24-epicathasterone, but does not act on castasterone and brassinolide. It is differentially expressed during development, being more abundant in young seedlings and actively growing cell cultures. Expression is induced in response to salicylic acid and methyl jasmonate and bacterial pathogens. O.I. C.G. H.G.
45.1 99.8 124.2 At1g32350 840127 AOX1D (alternative oxidase 1D) F:alternative oxidase activity;P:oxidation reduction, response to cyclopentenone;C:mitochondrial envelope, mitochondrion;OPFBM O.I. C.G. H.G.