CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM134379

Assay name St.Clair_1-40_285_Est_0.02%-silwet_Rep1_ATH1

GSE experiment GSE5754: Expression Level Polymorphism Project (ELP) - Est

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
43.1 99.8 34.8 At5g55420 835635 - Encodes a Protease inhibitor/seed storage/LTP family protein [pseudogene] O.I. C.G. H.G.
30.1 99.7 104.0 At1g12845 837841 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
25.3 99.6 104.1 At2g21530 816692 forkhead-associated domain-containing protein / FHA domain-containing protein F:unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast stroma, chloroplast;BPOAM O.I. C.G. H.G.
23.7 99.6 25.8 At4g01130 828207 acetylesterase, putative F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOM O.I. C.G. H.G.
22.3 99.6 98.0 At4g19390 827680 - F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BOPA O.I. C.G. H.G.
21.9 99.6 63.9 At2g39920 818579 acid phosphatase class B family protein F:acid phosphatase activity;P:response to cadmium ion;C:cellular_component unknown;PBO O.I. C.G. H.G.
21.6 99.6 57.5 At1g53035 841737 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
18.4 99.5 16.0 At2g29160 3768464 - F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
17.8 99.5 60.7 At1g02300 839576 cathepsin B-like cysteine protease, putative F:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis, regulation of catalytic activity;C:endomembrane system;MOPVBAF O.I. C.G. H.G.
17.4 99.5 77.2 At2g41180 818717 sigA-binding protein-related F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
16.0 99.5 155.4 At2g39030 818489 GCN5-related N-acetyltransferase (GNAT) family protein F:N-acetyltransferase activity;P:metabolic process;C:cellular_component unknown;BOMFPA O.I. C.G. H.G.
15.3 99.4 57.5 At4g13140 - - O.I. C.G. H.G.
15.0 99.4 26.4 At1g61670 842464 - F:molecular_function unknown;P:unknown;C:endomembrane system, integral to membrane;MFPOB O.I. C.G. H.G.
14.7 99.4 15.6 At5g61290 836250 flavin-containing monooxygenase family protein / FMO family protein F:NADP or NADPH binding, monooxygenase activity, FAD binding, flavin-containing monooxygenase activity;P:unknown;C:cellular_component unknown;BOMFPA O.I. C.G. H.G.
14.6 99.4 86.5 At2g37870 818363 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P O.I. C.G. H.G.
14.3 99.4 65.8 At3g28007 822424 nodulin MtN3 family protein F:unknown;P:unknown;C:endomembrane system, integral to membrane, membrane;PMOB O.I. C.G. H.G.
14.1 99.4 89.1 At4g16146 827304 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
14.1 99.4 16.6 At2g01400 814668 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
14.0 99.4 130.2 At2g19810 816500 zinc finger (CCCH-type) family protein F:transcription factor activity, nucleic acid binding;P:regulation of transcription;C:unknown;POM O.I. C.G. H.G.
13.8 99.4 13.7 At1g53100 841744 acetylglucosaminyltransferase F:acetylglucosaminyltransferase activity;P:carbohydrate biosynthetic process;C:membrane;MPBVO O.I. C.G. H.G.
13.7 99.4 70.1 At1g62430 842541 ATCDS1 Encodes a CDP-diacylglycerol synthase, involved in phospholipid biosynthesis. O.I. C.G. H.G.
13.6 99.4 49.3 At1g26650 839205 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
13.2 99.4 69.4 At1g16850 838256 unknown protein F:molecular_function unknown;P:response to salt stress;C:endomembrane system;P O.I. C.G. H.G.
13.0 99.4 146.7 At1g29395 839815 COR414-TM1 encodes a protein similar to the cold acclimation protein WCOR413 in wheat. Expression is induced by short-term cold-treatment, water deprivation, and abscisic acid treatment. Possibly targeted to thylakoid membrane. O.I. C.G. H.G.
12.9 99.3 28.4 At1g78450 844181 SOUL heme-binding family protein F:binding;P:biological_process unknown;C:endomembrane system;OMPBA O.I. C.G. H.G.
12.8 99.3 6.0 At4g13150 826929 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
12.2 99.3 227.9 At2g42530 818853 COR15B (COLD REGULATED 15B) F:unknown;P:response to cold;C:chloroplast, chloroplast stroma, chloroplast envelope;PBOMF O.I. C.G. H.G.
12.2 99.3 219.1 At5g55450 835638 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:response to other organism, lipid transport;C:endomembrane system;P O.I. C.G. H.G.
11.8 99.3 44.8 At1g76020 843933 - F:unknown;P:biological_process unknown;C:cell wall, vacuole;BPOMF O.I. C.G. H.G.
11.6 99.3 82.1 At1g65190 842826 protein kinase family protein F:protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;PMOBFV O.I. C.G. H.G.
11.4 99.3 91.4 At4g15440 827215 HPL1 (HYDROPEROXIDE LYASE 1) Encodes a hydroperoxide lyase. Also a member of the CYP74B cytochrome p450 family. In the ecotype Columbia (Col) the gene contains a 10-nucleotide deletion in its first exon that causes it to code for a truncated protein that results in a non-functional hydroperoxide lyase. O.I. C.G. H.G.
11.4 99.3 43.6 At5g43430 834363 ETFBETA Encodes the electron transfer flavoprotein ETF beta, a putative subunit of the mitochondrial electron transfer flavoprotein complex (ETF alpha is At1g50940) in Arabidopsis. Mutations of the ETF beta gene result in accelerated senescence and early death compared to wild-type during extended darkness. Also involved in the catabolism of leucine and chlorophyll degradation pathway activated during darkness-induced carbohydrate deprivation. O.I. C.G. H.G.
11.4 99.3 33.8 At1g65420 842853 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO O.I. C.G. H.G.
11.4 99.3 14.4 At3g55940 824760 phosphoinositide-specific phospholipase C, putative F:phosphoinositide phospholipase C activity, phospholipase C activity, phosphoric diester hydrolase activity;P:signal transduction, intracellular signaling cascade, lipid metabolic process;C:plasma membrane;MOFBPV O.I. C.G. H.G.
11.2 99.2 95.7 At4g34630 829615 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POB O.I. C.G. H.G.
11.2 99.2 40.9 At2g38790 818461 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
11.2 99.2 35.7 At5g15190 831371 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
11.1 99.2 73.6 At5g65840 836713 - F:molecular_function unknown;P:biological_process unknown;C:chloroplast stroma, chloroplast;PMBOF O.I. C.G. H.G.
11.1 99.2 19.2 At4g11370 826739 RHA1A Encodes a putative RING-H2 finger protein RHA1a. O.I. C.G. H.G.
11.0 99.2 89.9 At1g74520 843793 ATHVA22A Part of the AtHVA22a family. Protein expression is ABA- and stress-inducible. O.I. C.G. H.G.
10.9 99.2 93.5 At2g40750 818670 WRKY54 member of WRKY Transcription Factor; Group III O.I. C.G. H.G.
10.8 99.2 118.9 At5g23240 832388 DNAJ heat shock N-terminal domain-containing protein F:unfolded protein binding, heat shock protein binding;P:protein folding;C:chloroplast;BOMPFAV O.I. C.G. H.G.
10.5 99.2 170.9 At1g19960 838585 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOB O.I. C.G. H.G.
10.5 99.2 77.3 At2g16700 816171 ADF5 (ACTIN DEPOLYMERIZING FACTOR 5) Encodes actin depolymerizing factor 5 (ADF5). O.I. C.G. H.G.
10.5 99.2 61.5 At1g13470 837907 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
10.4 99.2 18.8 At2g24160 3768109 - F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
10.2 99.2 325.3 At5g59320 836051 LTP3 (LIPID TRANSFER PROTEIN 3) Predicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15. O.I. C.G. H.G.
10.2 99.2 182.8 At2g26020 817143 PDF1.2b (plant defensin 1.2b) Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2. O.I. C.G. H.G.
10.2 99.2 115.3 At1g28140 839708 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BPMO O.I. C.G. H.G.
10.2 99.2 77.7 At2g04240 814962 XERICO Encodes a small protein with an N-terminal trans-membrane domain and a RING-H2 zinc finger motif located at the C-terminus. Gene expression is induced by salt and osmotic stress. Transcrips levels are induced by DELLA proteins and repressed by gibberellic acid. Involved in ABA metabolism. O.I. C.G. H.G.
10.2 99.2 46.6 At1g02450 837800 NIMIN1 (NIM1-INTERACTING 1) NIMIN1 modulates PR gene expression according the following model: NPR1 forms a ternary complex with NIMIN1 and TGA factors upon SAR induction that binds to a positive regulatory cis-element of the PR-1 promoter, termed LS7. This leads to PR-1 gene induction. NIMIN1 decreases transcriptional activation, possibly through its EAR motif, which results in fine-tuning of PR-1 gene expression. O.I. C.G. H.G.
10.0 99.2 7.2 At4g24010 828501 ATCSLG1 encodes a protein similar to cellulose synthase O.I. C.G. H.G.
9.9 99.1 38.9 At1g66890 843007 - F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
9.9 99.1 17.3 At1g01250 839322 AP2 domain-containing transcription factor, putative encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. O.I. C.G. H.G.
9.8 99.1 7.3 At5g49120 834971 senescence-associated protein-related F:molecular_function unknown;P:biological_process unknown;C:chloroplast;OPFMBV O.I. C.G. H.G.
9.3 99.1 24.1 At3g01170 820469 structural constituent of ribosome F:structural constituent of ribosome;P:translation;C:ribosome, intracellular, chloroplast;P O.I. C.G. H.G.
9.1 99.1 356.7 At2g42540 818854 COR15A (COLD-REGULATED 15A) A cold-regulated gene whose product is targeted to the chloroplast and constitutive expression increases freezing tolerance in protoplasts in vitro and chloroplasts in vivo. NMR and x-ray diffraction studies suggest that COR15a alters the intrinsic curvature of the inner membrane of chloroplast envelope. O.I. C.G. H.G.
9.1 99.1 100.2 At4g04330 825753 unknown protein F:unknown;P:unknown;C:unknown;BPO O.I. C.G. H.G.
9.0 99.1 31.5 At4g16770 827383 iron ion binding / oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity, iron ion binding;P:flavonoid biosynthetic process;C:peroxisome;POBFM O.I. C.G. H.G.
9.0 99.1 29.8 At5g61810 836303 mitochondrial substrate carrier family protein F:binding, calcium ion binding;P:transport;C:mitochondrial inner membrane, membrane;MFPOBV O.I. C.G. H.G.
8.9 99.0 23.3 At5g48250 834878 zinc finger (B-box type) family protein F:transcription factor activity, zinc ion binding;P:unknown;C:plasma membrane;POM O.I. C.G. H.G.
8.9 99.0 14.3 At4g18530 827585 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO O.I. C.G. H.G.
8.8 99.0 70.0 At1g52410 841671 TSA1 (TSK-ASSOCIATING PROTEIN 1) Contains a novel calcium-binding repeat sequence. Binds TSK in vitro. Localizes to small cytoplasmic vesicles in interphase cells. In cells synchronized for cell division, TSA1 and TSK relocalize to ends of spindle microtubules that are ahead of separating chromatids during metaphase and anaphase of mitosis. May be involved in mitosis together with TSK. Expressed preferentially in the flower and shoot apex. Can form multimers. O.I. C.G. H.G.
8.8 99.0 39.5 At3g27210 822340 unknown protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:plasma membrane;MPOBF O.I. C.G. H.G.
8.8 99.0 12.9 At1g59620 842252 CW9 Encodes CW9. O.I. C.G. H.G.
8.8 99.0 9.4 At3g16360 820883 AHP4 (HPT PHOSPHOTRANSMITTER 4) Encodes AHP4, a histidine-containing phosphotransmitter involved in Histidine (His)-to-Aspartate (Asp) phosphorelay signal transduction. AHP4 is one of the six Arabidopsis thaliana histidine phosphotransfer proteins (AHPs). AHPs function as redundant positive regulators of cytokinin signaling. Members of the AHP gene family include: AT3G21510 (AHP1), AT3G29350 (AHP2), AT5G39340 (AHP3), AT3G16360 (AHP4), AT1G03430 (AHP5) and AT1G80100 (AHP6). O.I. C.G. H.G.
8.7 99.0 12.9 At4g13800 827014 permease-related F:unknown;P:biological_process unknown;C:plasma membrane;MFPOB O.I. C.G. H.G.
8.6 99.0 101.1 At3g52180 824383 SEX4 (STARCH-EXCESS 4) Encodes a plant-specific protein phosphatase that contains a protein tyrosine phosphatase (PTP) catalytic domain and a kinase interaction sequence (KIS) domain. This protein interacts with the plant SnRK AKIN11. Binds starch. Localized in the chloroplast. O.I. C.G. H.G.
8.6 99.0 12.9 At1g52770 841710 phototropic-responsive NPH3 family protein F:signal transducer activity;P:response to light stimulus;C:cellular_component unknown;P O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
43.1	99.8	34.8	At5g55420	835635	-	Encodes a Protease inhibitor/seed storage/LTP family protein [pseudogene]	O.I.	C.G.	H.G.
30.1	99.7	104.0	At1g12845	837841	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
25.3	99.6	104.1	At2g21530	816692	forkhead-associated domain-containing protein / FHA domain-containing protein	F:unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast stroma, chloroplast;BPOAM	O.I.	C.G.	H.G.
23.7	99.6	25.8	At4g01130	828207	acetylesterase, putative	F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOM	O.I.	C.G.	H.G.
22.3	99.6	98.0	At4g19390	827680	-	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BOPA	O.I.	C.G.	H.G.
21.9	99.6	63.9	At2g39920	818579	acid phosphatase class B family protein	F:acid phosphatase activity;P:response to cadmium ion;C:cellular_component unknown;PBO	O.I.	C.G.	H.G.
21.6	99.6	57.5	At1g53035	841737	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
18.4	99.5	16.0	At2g29160	3768464	-	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
17.8	99.5	60.7	At1g02300	839576	cathepsin B-like cysteine protease, putative	F:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis, regulation of catalytic activity;C:endomembrane system;MOPVBAF	O.I.	C.G.	H.G.
17.4	99.5	77.2	At2g41180	818717	sigA-binding protein-related	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
16.0	99.5	155.4	At2g39030	818489	GCN5-related N-acetyltransferase (GNAT) family protein	F:N-acetyltransferase activity;P:metabolic process;C:cellular_component unknown;BOMFPA	O.I.	C.G.	H.G.
15.3	99.4	57.5	At4g13140		-	-	O.I.	C.G.	H.G.
15.0	99.4	26.4	At1g61670	842464	-	F:molecular_function unknown;P:unknown;C:endomembrane system, integral to membrane;MFPOB	O.I.	C.G.	H.G.
14.7	99.4	15.6	At5g61290	836250	flavin-containing monooxygenase family protein / FMO family protein	F:NADP or NADPH binding, monooxygenase activity, FAD binding, flavin-containing monooxygenase activity;P:unknown;C:cellular_component unknown;BOMFPA	O.I.	C.G.	H.G.
14.6	99.4	86.5	At2g37870	818363	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:endomembrane system;P	O.I.	C.G.	H.G.
14.3	99.4	65.8	At3g28007	822424	nodulin MtN3 family protein	F:unknown;P:unknown;C:endomembrane system, integral to membrane, membrane;PMOB	O.I.	C.G.	H.G.
14.1	99.4	89.1	At4g16146	827304	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
14.1	99.4	16.6	At2g01400	814668	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
14.0	99.4	130.2	At2g19810	816500	zinc finger (CCCH-type) family protein	F:transcription factor activity, nucleic acid binding;P:regulation of transcription;C:unknown;POM	O.I.	C.G.	H.G.
13.8	99.4	13.7	At1g53100	841744	acetylglucosaminyltransferase	F:acetylglucosaminyltransferase activity;P:carbohydrate biosynthetic process;C:membrane;MPBVO	O.I.	C.G.	H.G.
13.7	99.4	70.1	At1g62430	842541	ATCDS1	Encodes a CDP-diacylglycerol synthase, involved in phospholipid biosynthesis.	O.I.	C.G.	H.G.
13.6	99.4	49.3	At1g26650	839205	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
13.2	99.4	69.4	At1g16850	838256	unknown protein	F:molecular_function unknown;P:response to salt stress;C:endomembrane system;P	O.I.	C.G.	H.G.
13.0	99.4	146.7	At1g29395	839815	COR414-TM1	encodes a protein similar to the cold acclimation protein WCOR413 in wheat. Expression is induced by short-term cold-treatment, water deprivation, and abscisic acid treatment. Possibly targeted to thylakoid membrane.	O.I.	C.G.	H.G.
12.9	99.3	28.4	At1g78450	844181	SOUL heme-binding family protein	F:binding;P:biological_process unknown;C:endomembrane system;OMPBA	O.I.	C.G.	H.G.
12.8	99.3	6.0	At4g13150	826929	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
12.2	99.3	227.9	At2g42530	818853	COR15B (COLD REGULATED 15B)	F:unknown;P:response to cold;C:chloroplast, chloroplast stroma, chloroplast envelope;PBOMF	O.I.	C.G.	H.G.
12.2	99.3	219.1	At5g55450	835638	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:response to other organism, lipid transport;C:endomembrane system;P	O.I.	C.G.	H.G.
11.8	99.3	44.8	At1g76020	843933	-	F:unknown;P:biological_process unknown;C:cell wall, vacuole;BPOMF	O.I.	C.G.	H.G.
11.6	99.3	82.1	At1g65190	842826	protein kinase family protein	F:protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;PMOBFV	O.I.	C.G.	H.G.
11.4	99.3	91.4	At4g15440	827215	HPL1 (HYDROPEROXIDE LYASE 1)	Encodes a hydroperoxide lyase. Also a member of the CYP74B cytochrome p450 family. In the ecotype Columbia (Col) the gene contains a 10-nucleotide deletion in its first exon that causes it to code for a truncated protein that results in a non-functional hydroperoxide lyase.	O.I.	C.G.	H.G.
11.4	99.3	43.6	At5g43430	834363	ETFBETA	Encodes the electron transfer flavoprotein ETF beta, a putative subunit of the mitochondrial electron transfer flavoprotein complex (ETF alpha is At1g50940) in Arabidopsis. Mutations of the ETF beta gene result in accelerated senescence and early death compared to wild-type during extended darkness. Also involved in the catabolism of leucine and chlorophyll degradation pathway activated during darkness-induced carbohydrate deprivation.	O.I.	C.G.	H.G.
11.4	99.3	33.8	At1g65420	842853	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO	O.I.	C.G.	H.G.
11.4	99.3	14.4	At3g55940	824760	phosphoinositide-specific phospholipase C, putative	F:phosphoinositide phospholipase C activity, phospholipase C activity, phosphoric diester hydrolase activity;P:signal transduction, intracellular signaling cascade, lipid metabolic process;C:plasma membrane;MOFBPV	O.I.	C.G.	H.G.
11.2	99.2	95.7	At4g34630	829615	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POB	O.I.	C.G.	H.G.
11.2	99.2	40.9	At2g38790	818461	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
11.2	99.2	35.7	At5g15190	831371	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
11.1	99.2	73.6	At5g65840	836713	-	F:molecular_function unknown;P:biological_process unknown;C:chloroplast stroma, chloroplast;PMBOF	O.I.	C.G.	H.G.
11.1	99.2	19.2	At4g11370	826739	RHA1A	Encodes a putative RING-H2 finger protein RHA1a.	O.I.	C.G.	H.G.
11.0	99.2	89.9	At1g74520	843793	ATHVA22A	Part of the AtHVA22a family. Protein expression is ABA- and stress-inducible.	O.I.	C.G.	H.G.
10.9	99.2	93.5	At2g40750	818670	WRKY54	member of WRKY Transcription Factor; Group III	O.I.	C.G.	H.G.
10.8	99.2	118.9	At5g23240	832388	DNAJ heat shock N-terminal domain-containing protein	F:unfolded protein binding, heat shock protein binding;P:protein folding;C:chloroplast;BOMPFAV	O.I.	C.G.	H.G.
10.5	99.2	170.9	At1g19960	838585	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOB	O.I.	C.G.	H.G.
10.5	99.2	77.3	At2g16700	816171	ADF5 (ACTIN DEPOLYMERIZING FACTOR 5)	Encodes actin depolymerizing factor 5 (ADF5).	O.I.	C.G.	H.G.
10.5	99.2	61.5	At1g13470	837907	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
10.4	99.2	18.8	At2g24160	3768109	-	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
10.2	99.2	325.3	At5g59320	836051	LTP3 (LIPID TRANSFER PROTEIN 3)	Predicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.	O.I.	C.G.	H.G.
10.2	99.2	182.8	At2g26020	817143	PDF1.2b (plant defensin 1.2b)	Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.	O.I.	C.G.	H.G.
10.2	99.2	115.3	At1g28140	839708	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BPMO	O.I.	C.G.	H.G.
10.2	99.2	77.7	At2g04240	814962	XERICO	Encodes a small protein with an N-terminal trans-membrane domain and a RING-H2 zinc finger motif located at the C-terminus. Gene expression is induced by salt and osmotic stress. Transcrips levels are induced by DELLA proteins and repressed by gibberellic acid. Involved in ABA metabolism.	O.I.	C.G.	H.G.
10.2	99.2	46.6	At1g02450	837800	NIMIN1 (NIM1-INTERACTING 1)	NIMIN1 modulates PR gene expression according the following model: NPR1 forms a ternary complex with NIMIN1 and TGA factors upon SAR induction that binds to a positive regulatory cis-element of the PR-1 promoter, termed LS7. This leads to PR-1 gene induction. NIMIN1 decreases transcriptional activation, possibly through its EAR motif, which results in fine-tuning of PR-1 gene expression.	O.I.	C.G.	H.G.
10.0	99.2	7.2	At4g24010	828501	ATCSLG1	encodes a protein similar to cellulose synthase	O.I.	C.G.	H.G.
9.9	99.1	38.9	At1g66890	843007	-	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
9.9	99.1	17.3	At1g01250	839322	AP2 domain-containing transcription factor, putative	encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.	O.I.	C.G.	H.G.
9.8	99.1	7.3	At5g49120	834971	senescence-associated protein-related	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;OPFMBV	O.I.	C.G.	H.G.
9.3	99.1	24.1	At3g01170	820469	structural constituent of ribosome	F:structural constituent of ribosome;P:translation;C:ribosome, intracellular, chloroplast;P	O.I.	C.G.	H.G.
9.1	99.1	356.7	At2g42540	818854	COR15A (COLD-REGULATED 15A)	A cold-regulated gene whose product is targeted to the chloroplast and constitutive expression increases freezing tolerance in protoplasts in vitro and chloroplasts in vivo. NMR and x-ray diffraction studies suggest that COR15a alters the intrinsic curvature of the inner membrane of chloroplast envelope.	O.I.	C.G.	H.G.
9.1	99.1	100.2	At4g04330	825753	unknown protein	F:unknown;P:unknown;C:unknown;BPO	O.I.	C.G.	H.G.
9.0	99.1	31.5	At4g16770	827383	iron ion binding / oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity, iron ion binding;P:flavonoid biosynthetic process;C:peroxisome;POBFM	O.I.	C.G.	H.G.
9.0	99.1	29.8	At5g61810	836303	mitochondrial substrate carrier family protein	F:binding, calcium ion binding;P:transport;C:mitochondrial inner membrane, membrane;MFPOBV	O.I.	C.G.	H.G.
8.9	99.0	23.3	At5g48250	834878	zinc finger (B-box type) family protein	F:transcription factor activity, zinc ion binding;P:unknown;C:plasma membrane;POM	O.I.	C.G.	H.G.
8.9	99.0	14.3	At4g18530	827585	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO	O.I.	C.G.	H.G.
8.8	99.0	70.0	At1g52410	841671	TSA1 (TSK-ASSOCIATING PROTEIN 1)	Contains a novel calcium-binding repeat sequence. Binds TSK in vitro. Localizes to small cytoplasmic vesicles in interphase cells. In cells synchronized for cell division, TSA1 and TSK relocalize to ends of spindle microtubules that are ahead of separating chromatids during metaphase and anaphase of mitosis. May be involved in mitosis together with TSK. Expressed preferentially in the flower and shoot apex. Can form multimers.	O.I.	C.G.	H.G.
8.8	99.0	39.5	At3g27210	822340	unknown protein	F:molecular_function unknown;P:N-terminal protein myristoylation;C:plasma membrane;MPOBF	O.I.	C.G.	H.G.
8.8	99.0	12.9	At1g59620	842252	CW9	Encodes CW9.	O.I.	C.G.	H.G.
8.8	99.0	9.4	At3g16360	820883	AHP4 (HPT PHOSPHOTRANSMITTER 4)	Encodes AHP4, a histidine-containing phosphotransmitter involved in Histidine (His)-to-Aspartate (Asp) phosphorelay signal transduction. AHP4 is one of the six Arabidopsis thaliana histidine phosphotransfer proteins (AHPs). AHPs function as redundant positive regulators of cytokinin signaling. Members of the AHP gene family include: AT3G21510 (AHP1), AT3G29350 (AHP2), AT5G39340 (AHP3), AT3G16360 (AHP4), AT1G03430 (AHP5) and AT1G80100 (AHP6).	O.I.	C.G.	H.G.
8.7	99.0	12.9	At4g13800	827014	permease-related	F:unknown;P:biological_process unknown;C:plasma membrane;MFPOB	O.I.	C.G.	H.G.
8.6	99.0	101.1	At3g52180	824383	SEX4 (STARCH-EXCESS 4)	Encodes a plant-specific protein phosphatase that contains a protein tyrosine phosphatase (PTP) catalytic domain and a kinase interaction sequence (KIS) domain. This protein interacts with the plant SnRK AKIN11. Binds starch. Localized in the chloroplast.	O.I.	C.G.	H.G.
8.6	99.0	12.9	At1g52770	841710	phototropic-responsive NPH3 family protein	F:signal transducer activity;P:response to light stimulus;C:cellular_component unknown;P	O.I.	C.G.	H.G.

Back to the CoP portal site

Back to the KAGIANA project homepage

GSM ID	GSM134379
Assay name	St.Clair_1-40_285_Est_0.02%-silwet_Rep1_ATH1
GSE experiment	GSE5754: Expression Level Polymorphism Project (ELP) - Est

Microarray experiments to specifically-expressed genes

GSM ID GSM134379 Assay name St.Clair_1-40_285_Est_0.02%-silwet_Rep1_ATH1 GSE experiment GSE5754: Expression Level Polymorphism Project (ELP) - Est

GSM ID GSM134379

Assay name St.Clair_1-40_285_Est_0.02%-silwet_Rep1_ATH1

GSE experiment GSE5754: Expression Level Polymorphism Project (ELP) - Est