Microarray experiments to specifically-expressed genes

GSM ID GSM134378
Assay name St.Clair_1-39_394_Est_0.02%-silwet_Rep3_ATH1
GSE experiment GSE5754: Expression Level Polymorphism Project (ELP) - Est

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
64.099.842.4At5g55420835635-Encodes a Protease inhibitor/seed storage/LTP family protein [pseudogene]O.I.C.G.H.G.
39.299.8131.6At1g64900842798CYP89A2 (CYTOCHROME P450 89A2)Encodes cytochrome P450 (CYP89A2).O.I.C.G.H.G.
36.999.7148.0At3g57240824891BG3 (BETA-1,3-GLUCANASE 3)encodes a member of glycosyl hydrolase family 17O.I.C.G.H.G.
34.399.724.8At4g23130828412CRK5 (CYSTEINE-RICH RLK5)Encodes a receptor-like protein kinase. Naming convention from Chen et al 2003 (PMID 14756307)O.I.C.G.H.G.
34.099.733.9At2g241603768109-F:unknown;P:unknown;C:unknownO.I.C.G.H.G.
33.599.760.4At5g66320836764zinc finger (GATA type) family proteinEncodes GATA transcription factor gene GNC, involved in regulating carbon and nitrogen metabolism. Expression occurs in aerial tissue at an early stage of development and is inducible by nitrate.O.I.C.G.H.G.
33.099.7116.6At1g15520838122PDR12 (PLEIOTROPIC DRUG RESISTANCE 12)ABC transporter family involved in resistant to lead. Localizes to plasma membrane. Upregulated by lead. Expressed in leaves, flowers. Not expressed in roots.O.I.C.G.H.G.
26.499.765.8At2g29720817522CTF2BEncodes CTF2B.O.I.C.G.H.G.
25.999.733.5At1g57650842141-F:unknown;P:defense response;C:cellular_component unknown;PMBOFAVO.I.C.G.H.G.
25.599.722.1At1g52770841710phototropic-responsive NPH3 family proteinF:signal transducer activity;P:response to light stimulus;C:cellular_component unknown;PO.I.C.G.H.G.
22.999.631.5At3g23110821886AtRLP37 (Receptor Like Protein 37)F:protein binding, kinase activity;P:signal transduction, defense response;C:endomembrane system;PMOBFAVO.I.C.G.H.G.
22.599.6141.5At2g03760814903STEncodes a brassinosteroid sulfotransferase. In vitro experiements show that this enzyme has a preference for 24-epibrassinosteroids, particularly 24-epicathasterone, but does not act on castasterone and brassinolide. It is differentially expressed during development, being more abundant in young seedlings and actively growing cell cultures. Expression is induced in response to salicylic acid and methyl jasmonate and bacterial pathogens.O.I.C.G.H.G.
20.599.665.1At5g46050834646PTR3 (PEPTIDE TRANSPORTER 3)Encodes a di- and tri-peptide transporter involved in responses to wounding, virulent bacterial pathogens, and high NaCl concentrations. The protein is predicted to have 12 transmembrane helicies.O.I.C.G.H.G.
20.199.626.8At1g32960840190SBT3.3F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:apoplast, plant-type cell wall;BPOAFMO.I.C.G.H.G.
19.399.658.7At3g25610822148haloacid dehalogenase-like hydrolase family proteinF:ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism;P:metabolic process, phospholipid transport, ATP biosynthetic process;C:plasma membrane;MBOFPAVO.I.C.G.H.G.
18.899.5226.9At2g37710818348RLK (receptor lectin kinase)Induced in response to Salicylic acid.O.I.C.G.H.G.
18.799.5108.6At5g434508343652-oxoglutarate-dependent dioxygenase, putativeencodes a protein whose sequence is similar to ACC oxidaseO.I.C.G.H.G.
16.799.537.9At4g03450827913ankyrin repeat family proteinF:protein binding;P:unknown;C:unknown;MOPFBVAO.I.C.G.H.G.
16.699.582.2At1g22070838812TGA3Encodes a transcription factor. Like other TGAla-related factors, TGA3 has a highly conserved bZIP region and exhibits similar DNA-binding properties.O.I.C.G.H.G.
16.499.5110.3At2g26440817184pectinesterase family proteinF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMO.I.C.G.H.G.
15.999.5113.2At2g40750818670WRKY54member of WRKY Transcription Factor; Group IIIO.I.C.G.H.G.
15.399.4211.4At2g24850817022TAT3 (TYROSINE AMINOTRANSFERASE 3)Encodes a tyrosine aminotransferase that is responsive to treatment with jasmonic acid.O.I.C.G.H.G.
15.299.413.4At3g47090823862leucine-rich repeat transmembrane protein kinase, putativeF:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:chloroplast;MPOBFVAO.I.C.G.H.G.
14.699.434.3At2g23680816899stress-responsive protein, putativeF:molecular_function unknown;P:response to stress;C:membrane;PO.I.C.G.H.G.
14.699.422.5At3g45290823667MLO3 (MILDEW RESISTANCE LOCUS O 3)A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO3 belongs to the clade IV, with AtMLO2, AtMLO6 and AtMLO12. The gene is expressed during early seedling growth, in primary root and lateral root primordia, in fruit abscission zone, in vascular system of cotyledons and in trichomes of young leaves,; it was not expressed in mature rosette leaves, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s).O.I.C.G.H.G.
14.499.438.7At1g73805843716calmodulin bindingF:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
14.399.491.3At1g65190842826protein kinase family proteinF:protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;PMOBFVO.I.C.G.H.G.
14.299.497.6At5g04930830375ALA1 (aminophospholipid ATPase1)Encodes a putative aminophospholipid translocase (p-type ATPase) involved in chilling response.O.I.C.G.H.G.
14.099.456.5At1g32940840188SBT3.5F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:apoplast;BPOAFMO.I.C.G.H.G.
14.099.455.3At3g55130824679ATWBC19 (White-Brown Complex homolog 19)Encodes a vacuole localized protein of the ABC transporter White-Brown Complex (WBC) family. When overexpressed in planta, confers resistance to kanamycin.O.I.C.G.H.G.
13.999.437.7At5g60900836211RLK1 (RECEPTOR-LIKE PROTEIN KINASE 1)Encodes a receptor-like protein kinase.O.I.C.G.H.G.
13.899.4118.2At3g26830822298PAD3 (PHYTOALEXIN DEFICIENT 3)Mutations in pad3 are defective in biosynthesis of the indole derived phytoalexin camalexin. Encodes a cytochrome P450 enzyme that catalyzes the conversion of dihydrocamalexic acid to camalexin.O.I.C.G.H.G.
13.899.423.0At1g64170842721ATCHX16 (CATION/H+ EXCHANGER 16)member of Putative Na+/H+ antiporter familyO.I.C.G.H.G.
13.799.466.3At2g46430819251ATCNGC3 (CYCLIC NUCLEOTIDE GATED CHANNEL 3)cyclic nucleotide gated channel (CNGC4), downstream component of the signaling pathways leading to HR/resistanceO.I.C.G.H.G.
13.699.4104.9At3g51450824308strictosidine synthase family proteinF:strictosidine synthase activity;P:alkaloid biosynthetic process, biosynthetic process;C:endomembrane system;BPMOAFO.I.C.G.H.G.
13.699.422.6At3g03060821146ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide bindingF:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:cell wall, plant-type cell wall;OMBFPAVO.I.C.G.H.G.
13.499.440.9At4g28490828967HAE (HAESA)member of Receptor kinase-like protein familyO.I.C.G.H.G.
13.499.432.0At1g32870840181ANAC13 (Arabidopsis thaliana NAC domain protein 13)F:transcription factor activity;P:multicellular organismal development, response to UV-B, response to red light;C:cellular_component unknown;POMFO.I.C.G.H.G.
13.199.436.3At3g11010820272AtRLP34 (Receptor Like Protein 34)F:protein binding, kinase activity;P:signal transduction, defense response;C:cellular_component unknown;PMOBFAVO.I.C.G.H.G.
13.099.4159.4At2g04400814980indole-3-glycerol phosphate synthase (IGPS)F:indole-3-glycerol-phosphate synthase activity;P:tryptophan biosynthetic process;C:chloroplast;BOAFPO.I.C.G.H.G.
13.099.4125.5At5g13200831159GRAM domain-containing protein / ABA-responsive protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.C.G.H.G.
12.899.368.1At4g27585828868band 7 family proteinF:unknown;P:biological_process unknown;C:mitochondrion, plastid, membrane;BOMPAFVO.I.C.G.H.G.
12.199.3206.9At5g19240832044unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
11.999.3160.9At3g54640824629TSA1 (TRYPTOPHAN SYNTHASE ALPHA CHAIN)Catalyzes the conversion of indole-3-glycerolphosphate to indole, the penultimate reaction in the biosynthesis of tryptophan. Functions as a heterocomplex with tryptophan synthase beta subunit (TSA2).O.I.C.G.H.G.
11.999.331.7At1g11330837675S-locus lectin protein kinase family proteinF:in 7 functions;P:protein amino acid phosphorylation, recognition of pollen;C:plasma membrane;MPOBFVAO.I.C.G.H.G.
11.799.340.1At5g36220833619CYP81D1 (CYTOCHROME P450 81D1)member of CYP81DO.I.C.G.H.G.
11.699.326.6At3g05650819732AtRLP32 (Receptor Like Protein 32)F:protein binding, kinase activity;P:signal transduction, defense response;C:endomembrane system;PMOBFAVO.I.C.G.H.G.
11.599.331.8At2g20720816600pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.C.G.H.G.
11.499.387.0At5g18470831965curculin-like (mannose-binding) lectin family proteinF:sugar binding;P:biological_process unknown;C:plant-type cell wall;PO.I.C.G.H.G.
11.399.3128.0At3g48640824024unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
11.399.341.3At1g67970843125AT-HSFA8member of Heat Stress Transcription Factor (Hsf) familyO.I.C.G.H.G.
11.399.38.1At1g17600838336disease resistance protein (TIR-NBS-LRR class), putativeF:transmembrane receptor activity, protein binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFAO.I.C.G.H.G.
11.299.2144.4At5g56350835735pyruvate kinase, putativeF:pyruvate kinase activity, potassium ion binding, magnesium ion binding, catalytic activity;P:glycolysis;C:cellular_component unknown;BOMPFAO.I.C.G.H.G.
11.299.273.8At1g14360837998UTR3 (UDP-GALACTOSE TRANSPORTER 3)F:pyrimidine nucleotide sugar transmembrane transporter activity;P:unknown;C:endomembrane system;MOPFO.I.C.G.H.G.
10.999.235.1At2g44240819032unknown proteinF:unknown;P:response to oxidative stress;C:endomembrane system;PFBO.I.C.G.H.G.
10.899.260.9At1g32350840127AOX1D (alternative oxidase 1D)F:alternative oxidase activity;P:oxidation reduction, response to cyclopentenone;C:mitochondrial envelope, mitochondrion;OPFBMO.I.C.G.H.G.
10.799.2168.4At1g21250838721WAK1 (CELL WALL-ASSOCIATED KINASE)cell wall-associated kinase, may function as a signaling receptor of extracellular matrix component.O.I.C.G.H.G.
10.699.255.1At1g55910842041ZIP11 (ZINC TRANSPORTER 11 PRECURSOR)member of Putative zinc transporter ZIP2 - like familyO.I.C.G.H.G.
10.699.214.2At1g59620842252CW9Encodes CW9.O.I.C.G.H.G.
10.499.2156.2At5g24530832524DMR6 (DOWNY MILDEW RESISTANT 6)Encodes a putative 2OG-Fe(II) oxygenase that is defense-associated but required for susceptibility to downy mildew.O.I.C.G.H.G.
10.499.2139.6At2g41730818772unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
10.499.292.2At1g21670838769-F:unknown;P:proteolysis;C:cell wall, plant-type cell wall;BOPAFMO.I.C.G.H.G.
10.199.291.5At2g47000819314ABCB4 (ATP BINDING CASSETTE SUBFAMILY B4)Multidrug resistance P-glycoprotein (MDR/PGP) subfamily of ABC transporters. Functions in the basipetal redirection of auxin from the root tip. Exhibits apolar plasma membrane localization in the root cap and polar localization in tissues above.O.I.C.G.H.G.
10.199.244.2At3g48850824046mitochondrial phosphate transporter, putativeF:binding;P:transport;C:mitochondrial inner membrane, chloroplast, membrane;MFPOO.I.C.G.H.G.
10.199.225.4At5g04360830315ATLDA (LIMIT DEXTRINASE)Encodes an enzyme thought to be involved in the hydrolysis of the α-1,6 linkages during starch degradation in seed endosperm. However, a knockout mutant of Arabidopsis lacking limit dextrinase has normal rates of starch degradation in the leaf at night, indicating that more than one isoamylases might be involved in this process.O.I.C.G.H.G.
10.099.2301.5At5g03350831863legume lectin family proteinF:carbohydrate binding, sugar binding;P:biological_process unknown;C:apoplast, cell wall, chloroplast;PBOO.I.C.G.H.G.
10.099.227.5At2g39710818555aspartyl protease family proteinEncodes a Cysteine-rich peptide (CRP) family proteinO.I.C.G.H.G.
9.999.138.5At1g31690840056amine oxidase/ copper ion binding / quinone bindingF:quinone binding, amine oxidase activity, copper ion binding;P:cellular amine metabolic process;C:endomembrane system;FBMOPAO.I.C.G.H.G.
9.899.1257.8At3g57260824893BGL2 (BETA-1,3-GLUCANASE 2)beta 1,3-glucanaseO.I.C.G.H.G.
9.899.195.3At4g37370829891CYP81D8member of CYP81DO.I.C.G.H.G.
9.899.149.0At1g034008387512-oxoglutarate-dependent dioxygenase, putativeA single copy gene that encodes a protein with sequence similarity to tomato E8 (ACC oxidase, the last step in ethylene biosynthesis) involved in ethylene synthesis and fruit ripening in tomato. This gene is not induced by ethylene in siliques. The transcript is found in siliques, etiolated seedlings, leaves, stems and flowers.O.I.C.G.H.G.
9.899.115.8At4g25110828614AtMC2 (metacaspase 2)F:cysteine-type endopeptidase activity;P:proteolysis;C:unknown;POMFBVAO.I.C.G.H.G.
9.799.1194.6At5g55450835638protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:response to other organism, lipid transport;C:endomembrane system;PO.I.C.G.H.G.
9.799.129.2At5g05190830401unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPVO.I.C.G.H.G.
9.799.124.4At5g01850831760protein kinase, putativeF:protein serine/threonine/tyrosine kinase activity, kinase activity;P:protein amino acid phosphorylation;C:unknown;MPOBFVAO.I.C.G.H.G.
9.799.119.2At4g17570827474zinc finger (GATA type) family proteinF:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus;PFOMBO.I.C.G.H.G.
9.799.119.0At1g33030840198O-methyltransferase family 2 proteinF:O-methyltransferase activity;P:lignin biosynthetic process;C:cytosol;PBFOMO.I.C.G.H.G.
9.699.1189.1At5g10760830943aspartyl protease family proteinF:aspartic-type endopeptidase activity;P:proteolysis;C:apoplast;PMFOO.I.C.G.H.G.
9.699.1106.9At5g4854083491033 kDa secretory protein-relatedF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
9.699.156.5At4g39030830058EDS5 (ENHANCED DISEASE SUSCEPTIBILITY 5)Encodes an orphan multidrug and toxin extrusion transporter. Essential component of salicylic acid-dependent signaling for disease resistance. Member of the MATE-transporter family. Expression induced by salicylic acid. Mutants are salicylic acid-deficient.O.I.C.G.H.G.
9.699.153.5At5g40170834015AtRLP54 (Receptor Like Protein 54)F:protein binding, kinase activity;P:signal transduction, defense response;C:endomembrane system;PMOBFAVO.I.C.G.H.G.
9.699.145.8At1g66880843006serine/threonine protein kinase family proteinF:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVAO.I.C.G.H.G.
9.699.135.4At3g11090820280LBD21 (LOB DOMAIN-CONTAINING PROTEIN 21)F:unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
9.599.1141.7At4g14400827085ACD6 (ACCELERATED CELL DEATH 6)encodes a novel protein with putative ankyrin and transmembrane regions. It is a member of one of the largest uncharacterized gene families in higher plants. The gene is involved in resistance to Pseudomonas syringae.O.I.C.G.H.G.
9.499.1160.3At4g13510826983AMT1Encodes a plasma membrane localized ammonium transporter. Contains a cytosolic trans-activation domain essential for ammonium uptake.O.I.C.G.H.G.
9.499.160.1At1g73800--O.I.C.G.H.G.
9.399.125.3At1g23840838995unknown proteinF:unknown;P:unknown;C:endomembrane system;PO.I.C.G.H.G.
9.399.119.7At1g05300837029ZIP5member of Fe(II) transporter isolog familyO.I.C.G.H.G.
9.299.1162.3At5g26340832703MSS1Encodes a protein with high affinity, hexose-specific/H+ symporter activity. The activity of the transporter appears to be negatively regulated by phosphorylation. Importantly, microarray analysis, as well as the study of the expression of this gene in mutants involved in programmed cell death (PCD) demonstrated a tight correlation between this gene's expression and PCD.O.I.C.G.H.G.
9.299.149.2At1g21270838723WAK2cytoplasmic serine/threonine protein kinase induced by salicylic acid. mutant plants exhibit a loss of cell expansion and dependence on sugars and salts for seedling growth, affecting the expression and activity of vacuolar invertase.O.I.C.G.H.G.
9.299.137.9At4g34480829599catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compoundsF:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFOO.I.C.G.H.G.
9.099.1108.1At3g56710824838SIB1 (SIGMA FACTOR BINDING PROTEIN 1)Sig1 binding protein; interacts with Sig1R4. As well as Sig1, SibI is imported into chloroplasts and its expression is light-dependent in mature chloroplasts.O.I.C.G.H.G.
9.099.157.5At2g30770817628CYP71A13 (cytochrome P450, family 71, subfamily A, polypeptide 13)putative cytochrome P450O.I.C.G.H.G.
9.099.149.8At5g45380834574sodium:solute symporter family proteinF:urea transmembrane transporter activity, solute:sodium symporter activity;P:cellular response to nitrogen starvation;C:plasma membrane;BOMFAPO.I.C.G.H.G.
9.099.128.5At1g03660839033-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
8.999.083.7At1g05680837075UDP-glucoronosyl/UDP-glucosyl transferase family proteinF:transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity, UDP-glucosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBVOFO.I.C.G.H.G.
8.899.080.2At1g07280837239bindingF:binding;P:biological_process unknown;C:chloroplast;PBOAFMO.I.C.G.H.G.
8.899.078.5At4g05020825844NDB2 (NAD(P)H dehydrogenase B2)F:disulfide oxidoreductase activity, oxidoreductase activity, FAD binding;P:unknown;C:extrinsic to mitochondrial inner membrane, mitochondrion;BOFPAMO.I.C.G.H.G.
8.899.047.2At5g33290833302XGD1 (XYLOGALACTURONAN DEFICIENT 1)Acts as a xylogalacturonan xylosyltransferase within the XGA biosynthesis pathway. Involved in pectin biosynthesis.O.I.C.G.H.G.
8.799.014.2At4g18250827551receptor serine/threonine kinase, putativeF:transmembrane receptor protein serine/threonine kinase activity, kinase activity;P:protein amino acid phosphorylation;C:unknown;MPOBFVAO.I.C.G.H.G.



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