Microarray experiments to specifically-expressed genes

GSM ID GSM134366
Assay name St.Clair_1-27_449_Cvi-1_0.02%-silwet_Rep3_ATH1
GSE experiment GSE5753: Expression Level Polymorphism Project (ELP) - Cvi-1

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
56.199.859.2At1g78450844181SOUL heme-binding family proteinF:binding;P:biological_process unknown;C:endomembrane system;OMPBAO.I.C.G.H.G.
51.999.861.8At1g58025842169DNA bindingF:DNA binding;P:biological_process unknown;C:cellular_component unknown;MOFBPVO.I.C.G.H.G.
39.199.876.6At1g31690840056amine oxidase/ copper ion binding / quinone bindingF:quinone binding, amine oxidase activity, copper ion binding;P:cellular amine metabolic process;C:endomembrane system;FBMOPAO.I.C.G.H.G.
29.399.7199.2At4g03060828102AOP2 (ALKENYL HYDROXALKYL PRODUCING 2)Encodes a truncated and null function protein, due to a 5-bp deletion in cDNA. The functional allele in ecotype Cvi, AOP2, encodes a 2-oxoglutarate-dependent dioxygenase which is involved in glucosinolate biosynthesis. The natural variation in this locus explains the diversification of alkenyl glucosinolate among different ecotypes of Arabidopsis.O.I.C.G.H.G.
24.599.676.7At5g10140830878FLC (FLOWERING LOCUS C)MADS-box protein encoded by FLOWERING LOCUS C - transcription factor that functions as a repressor of floral transition and contributes to temperature compensation of the circadian clock. Expression is downregulated during cold treatment. Vernalization, FRI and the autonomous pathway all influence the state of FLC chromatin. Both maternal and paternal alleles are reset by vernalization, but their earliest activation differs in timing and location. Histone H3 trimethylation at lysine 4 and histone acetylation are associated with active FLC expression, whereas histone deacetylation and histone H3 dimethylation at lysines 9 and 27 are involved in FLC repression. Expression is also repressed by two small RNAs (30- and 24-nt) complementary to the FLC sense strand 3 to the polyA site. The small RNAs are most likely derived from an antisense transcript of FLC. Interacts with SOC1 and FT chromatin in vivo. Member of a protein complex.O.I.C.G.H.G.
23.899.656.0At1g14230837984nucleoside phosphatase family protein / GDA1/CD39 family proteinF:hydrolase activity;P:unknown;C:unknown;MFPOBO.I.C.G.H.G.
21.599.622.1At3g19350821469MPC (MATERNALLY EXPRESSED PAB C-TERMINAL)Encodes a the C-terminal domain of poly(A) binding proteins. MPC is imprinted such that only the maternal allele is expressed in the endosperm. MPC is silenced by the action of MET1 and its expression is promoted by DEM.O.I.C.G.H.G.
19.699.626.6At1g28610839761GDSL-motif lipase, putativeF:lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBMO.I.C.G.H.G.
19.599.619.4At1g52770841710phototropic-responsive NPH3 family proteinF:signal transducer activity;P:response to light stimulus;C:cellular_component unknown;PO.I.C.G.H.G.
19.299.610.1At2g22920816823serine carboxypeptidase S10 family proteinF:serine-type carboxypeptidase activity;P:proteolysis;C:plant-type cell wall;PMFBOO.I.C.G.H.G.
19.099.5123.9At2g40750818670WRKY54member of WRKY Transcription Factor; Group IIIO.I.C.G.H.G.
18.199.513.1At4g29610829082cytidine deaminase, putative / cytidine aminohydrolase, putativeF:hydrolase activity, cytidine deaminase activity, zinc ion binding, catalytic activity;P:cytidine deamination, cytidine metabolic process;C:cellular_component unknown;BOMPFAO.I.C.G.H.G.
17.899.580.1At1g13470837907unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
17.799.513.3At2g4757081937060S ribosomal protein L18 (RPL18A)F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, large ribosomal subunit;MOFPAO.I.C.G.H.G.
15.899.574.6At5g42900834301unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
15.699.517.2At1g59620842252CW9Encodes CW9.O.I.C.G.H.G.
15.399.412.7At5g24480832519beta-galactosidaseF:beta-galactosidase activity;P:carbohydrate metabolic process;C:beta-galactosidase complex;PO.I.C.G.H.G.
15.099.437.6At3g07650819956COL9 (CONSTANS-LIKE 9)This gene belongs to the CO (CONSTANS) gene family. This gene family is divided in three subgroups: groups III, to which COL9 belongs, is characterised by one B-box (supposed to regulate protein-protein interactions) and a second diverged zinc finger. COL9 downregulates expression of CO (CONSTANS) as well as FT and SOC1 which are known regulatory targets of CO.O.I.C.G.H.G.
13.499.425.0At3g04650819623oxidoreductaseF:oxidoreductase activity;P:unknown;C:chloroplast;OBPAMFO.I.C.G.H.G.
13.099.414.7At5g61290836250flavin-containing monooxygenase family protein / FMO family proteinF:NADP or NADPH binding, monooxygenase activity, FAD binding, flavin-containing monooxygenase activity;P:unknown;C:cellular_component unknown;BOMFPAO.I.C.G.H.G.
12.899.345.2At4g37150829869MES9 (METHYL ESTERASE 9)Encodes a protein shown to have carboxylesterase activity, methyl salicylate esterase activity, methyl jasmonate esterase activity, and methyl IAA esterase activity in vitro. MES9 appears to be involved in MeSA hydrolysis in planta. Expression of MES9 can restore systemic acquired resistance in SAR-deficient tobacco plants. This protein does not act on MeGA4, or MEGA9 in vitro.O.I.C.G.H.G.
12.799.376.1At5g10180830882AST68Encodes a low-affinity sulfate transporter expressed in the root cap and central cylinder, where it is induced by sulfur starvation. Expression in the shoot vascular system is not induced by sulfur starvation.O.I.C.G.H.G. unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
11.799.373.2At2g22980816829serine-type carboxypeptidaseF:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFBOO.I.C.G.H.G.
10.699.236.6At5g50450835113zinc finger (MYND type) family proteinF:binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;FPBMOO.I.C.G.H.G.
10.599.229.5At5g38290833811peptidyl-tRNA hydrolase family proteinF:aminoacyl-tRNA hydrolase activity;P:translation;C:chloroplast;BOPFMO.I.C.G.H.G.
10.499.219.9At3g21950821753methyltransferaseF:methyltransferase activity;P:response to cadmium ion;C:cellular_component unknown;POBMFO.I.C.G.H.G.
10.399.2135.9At1g70890843427MLP43 (MLP-LIKE PROTEIN 43)F:molecular_function unknown;P:response to biotic stimulus, defense response;C:chloroplast;PO.I.C.G.H.G. proteinF:unknown;P:unknown;C:chloroplast envelope;BOPAO.I.C.G.H.G. protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFO.I.C.G.H.G. proteinF:molecular_function unknown;P:biological_process unknown;C:vacuoleO.I.C.G.H.G.
9.899.1160.9At1g21250838721WAK1 (CELL WALL-ASSOCIATED KINASE)cell wall-associated kinase, may function as a signaling receptor of extracellular matrix component.O.I.C.G.H.G.
9.799.1133.6At5g54960835587PDC2 (pyruvate decarboxylase-2)pyruvate decarboxylase-2O.I.C.G.H.G.
9.799.19.4At3g25020822093AtRLP42 (Receptor Like Protein 42)F:protein binding;P:signal transduction, defense response;C:endomembrane system;PMOBFAVO.I.C.G.H.G.
9.599.124.0At5g48250834878zinc finger (B-box type) family proteinF:transcription factor activity, zinc ion binding;P:unknown;C:plasma membrane;POMO.I.C.G.H.G.
9.499.19.1At1g17665838343unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OPMFO.I.C.G.H.G.
9.399.148.0At3g47800823934aldose 1-epimerase family proteinF:aldose 1-epimerase activity;P:galactose metabolic process, hexose metabolic process, carbohydrate metabolic process;C:endomembrane system;BOMFPAO.I.C.G.H.G. (ARABIDOPSIS PSEUDO-RESPONSE REGULATOR 3)Encodes pseudo-response regulator 3 (APRR3/PRR3). PRR3 transcript levels vary in a circadian pattern with peak expression at dusk under long and short day conditions. PRR3 affects the period of the circadian clock and seedlings with reduced levels of PRR3 have shorter periods, based on transcriptional assays of clock-regulated genes. PRR3 is expressed in the vasculature of cotyledons and leaves where it may help stabilize the TOC1 protein by preventing interactions between TOC1 and the F-box protein ZTL.O.I.C.G.H.G. a tandem repeat with AT2G30424 and AT2G30432O.I.C.G.H.G.
8.899.0102.3At5g63780836498SHA1 (shoot apical meristem arrest 1)Encodes SHA1 (shoot apical meristem arrest), a putative E3 ligase (a RING finger protein) required for post-embryonic SAM maintenance. The mutant sha1-1 shows a primary SAM-deficient phenotype at the adult stage.O.I.C.G.H.G.
8.899.021.5At2g24120816946SCA3 (SCABRA 3)F:DNA-directed RNA polymerase activity, DNA binding;P:transcription;C:mitochondrion;OFPMVBO.I.C.G.H.G.
8.799.033.0At3g03090821117AtVGT1 (Arabidopsis thaliana vacuolar glucose transporter 1)Encodes a vacuolar membrane-localized glucose transporter that can also transport fructose. Mutations in these gene have effects on seed germination and time to flowering.O.I.C.G.H.G.

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