Microarray experiments to specifically-expressed genes

GSM ID GSM134315
Assay name Penfield_1-17_embryo-PAC_Rep2_ATH1
GSE experiment GSE5751: The early post-germinative embryo and endosperm transcriptomes in Arabidopsis

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
222.9100.0286.8At2g41260818725M17Late-embryogenesis-abundant gene. Involved in the acquisition of desiccation tolerance during late phase of embryogenesis.O.I.C.G.H.G.
213.7100.046.2At2g24560816992carboxylesterase/ hydrolase, acting on ester bondsF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFMO.I.C.G.H.G.
193.5100.0236.0At3g53040824470late embryogenesis abundant protein, putative / LEA protein, putativeF:unknown;P:embryonic development ending in seed dormancy;C:unknown;MBOFPAVO.I.C.G.H.G.
192.8100.0262.1At2g36640818236ATECP63 (EMBRYONIC CELL PROTEIN 63)Encodes putative phosphotyrosine protein belonging to late embryogenesis abundant (LEA) protein in group 3 that might be involved in maturation and desiccation tolerance of seeds. RFLP and CAPS mapping place it on chromosome 4 but the nucleotide sequence maps it to chromosome 2.O.I.C.G.H.G.
185.0100.0311.9At2g21820816718unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
171.8100.045.2At2g27300817273NTL8 (NTM1-LIKE 8)F:transcription factor activity;P:multicellular organismal development, response to salt stress, seed germination;C:plasma membrane;PO.I.C.G.H.G.
153.299.9421.8At2g35300818097late embryogenesis abundant group 1 domain-containing protein / LEA group 1 domain-containing proteinF:molecular_function unknown;P:embryonic development ending in seed dormancy, pollen tube development;C:cellular_component unknown;PO.I.C.G.H.G.
148.199.9301.8At2g40170818608GEA6 (LATE EMBRYOGENESIS ABUNDANT 6)Encodes a group 1 LEA gene that is activated by direct binding of ABI5 to its promoter and is involved in response to ABA. Is required for normal seed development. Involved in regulating the timing of dessication tolerance and rate of water loss during seed maturation.O.I.C.G.H.G.
139.899.9421.6At1g75830843916LCR67Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.O.I.C.G.H.G.
134.799.9207.7At3g19920821530unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO.I.C.G.H.G.
134.699.9135.8At5g44310834454late embryogenesis abundant domain-containing protein / LEA domain-containing proteinF:unknown;P:embryonic development ending in seed dormancy;C:unknown;OMBFPAVO.I.C.G.H.G.
133.899.9421.6At1g32560840150late embryogenesis abundant group 1 domain-containing protein / LEA group 1 domain-containing proteinF:molecular_function unknown;P:embryonic development ending in seed dormancy, embryonic development;C:cellular_component unknown;PMOO.I.C.G.H.G.
96.099.9300.9At5g66780836811unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
94.599.939.7At5g38780833869S-adenosyl-L-methionine:carboxyl methyltransferase family proteinF:S-adenosylmethionine-dependent methyltransferase activity, methyltransferase activity;P:biological_process unknown;C:cellular_component unknown;POBMFO.I.C.G.H.G.
91.899.9214.5At2g41280818727M10Encodes a hydrophilic protein similar to Late Embryogenesis Activated (LEA) proteins expressed during embryogenesis, which are thought to be involved in the acquisition of dessication tolerance.O.I.C.G.H.G.
90.899.9257.7At5g62490836369ATHVA22BPart of the AtHVA22 family. Protein expression is ABA- and stress-inducible.O.I.C.G.H.G.
89.599.952.8At1g48660841288auxin-responsive GH3 family proteinF:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;OPBMFO.I.C.G.H.G.
87.999.990.3At4g24150828515AtGRF8 (GROWTH-REGULATING FACTOR 8)Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Involved in leaf development and expressed in shoot and flower.O.I.C.G.H.G.
83.299.9205.7At5g07330830624unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PO.I.C.G.H.G.
81.999.9158.9At1g15550838125GA3OX1 (GIBBERELLIN 3-OXIDASE 1)Involved in later steps of the gibberellic acid biosynthetic pathway. Activated by AGAMOUS in a cal-1, ap1-1 background. Deletion of 208 bp from -1016 to -809 (Δ-808) resulted in loss of GA-negative feedback (this sequence, which contains a 43-bp sequence GNFEI, was shown to be sufficient for GA-negative feedback).O.I.C.G.H.G.
79.499.9234.9At1g17490838322unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
76.099.9445.4At1g04560839491AWPM-19-like membrane family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
62.099.8303.2At1g48130841231ATPER1encodes a protein similar to the 1-cysteine (1-Cys) peroxiredoxin family of antioxidants. Expression is limited to seed (aleurone and embryo) and is not induced by ABA or drought.O.I.C.G.H.G.
60.999.866.0At1g16730838244unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.C.G.H.G.
55.699.8273.6At5g14450831296GDSL-motif lipase/hydrolase family proteinF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:plant-type cell wall;PBFOMO.I.C.G.H.G.
55.299.8241.6At3g54940824659--O.I.C.G.H.G.
54.299.8495.3At1g52690841701late embryogenesis abundant protein, putative / LEA protein, putativeF:molecular_function unknown;P:embryonic development ending in seed dormancy;C:cellular_component unknown;PBMOFVAO.I.C.G.H.G.
53.599.8159.2At5g01300830983phosphatidylethanolamine-binding family proteinF:phosphatidylethanolamine binding;P:biological_process unknown;C:cellular_component unknown;BOAPFO.I.C.G.H.G.
52.199.839.7At4g24660828568ATHB22 (HOMEOBOX PROTEIN 22)F:transcription factor activity, DNA binding;P:embryonic development ending in seed dormancy;C:nucleus;PMO.I.C.G.H.G.
51.099.846.4At3g18510821381unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
50.399.832.8At5g04000830279unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
49.799.810.6At1g24851839087unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;OMFBPVO.I.C.G.H.G.
47.299.849.0At1g22985838906AP2 domain-containing transcription factor, putativeencodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily.O.I.C.G.H.G.
46.599.882.5At2g23110816843-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
43.099.847.8At5g14180831268MPL1 (MYZUS PERSICAE-INDUCED LIPASE 1)F:catalytic activity;P:glycerol biosynthetic process, lipid metabolic process;C:endomembrane system;MFPBOO.I.C.G.H.G.
42.499.8102.9At3g58450825014universal stress protein (USP) family proteinF:molecular_function unknown;P:response to stress;C:cellular_component unknown;BPAOFMO.I.C.G.H.G.
42.199.815.8At1g77570844092DNA binding / transcription factorF:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:endomembrane system, nucleus;PMOFO.I.C.G.H.G.
41.999.886.0At1g64110842716AAA-type ATPase family proteinF:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:endomembrane system;BOMFPAVO.I.C.G.H.G.
41.499.8202.5At1g54870841926binding / catalytic/ oxidoreductaseF:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:chloroplast;BOMFPAVO.I.C.G.H.G.
40.299.826.0At1g80340844374GA3OX2 (GIBBERELLIN 3-OXIDASE 2)Encodes a protein with gibberellin 3 β-hydroxylase activity. The protein was heterologously expressed in E. coli and shown to catalyze the hydroxylation of both GA9 and GA20.O.I.C.G.H.G.
40.199.8112.7At3g12960820482unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
39.799.839.1At2g38340818414AP2 domain-containing transcription factor, putative (DRE2B)encodes a member of the DREB subfamily A-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are eight members in this subfamily including DREB2A AND DREB2B that are involved in response to drought.O.I.C.G.H.G.
39.599.841.7At5g61880836309signaling molecule-relatedF:unknown;P:biological_process unknown;C:endomembrane system;MFPOO.I.C.G.H.G.
38.799.873.7At2g18560816371UDP-glucoronosyl/UDP-glucosyl transferase family proteinF:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBOVFO.I.C.G.H.G.
38.799.822.5At2g38720818454MAP65-5 (MICROTUBULE-ASSOCIATED PROTEIN 65-5)F:microtubule binding;P:microtubule polymerization, anaphase;C:cortical microtubule, microtubule, preprophase band, spindle, phragmoplast;MOBFPAVO.I.C.G.H.G.
36.999.735.9At1g22600838866-F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPFO.I.C.G.H.G.
36.899.7174.4At5g51940835269NRPB6AOne of two highly similar proteins that can serve as a non-catalytic subunit of nuclear DNA-dependent RNA polymerases II, IV and V; homologous to budding yeast RPB6 and the E. coli RNA polymerase omega subunit. Probably redundant with At2g04630.O.I.C.G.H.G.
36.899.728.7At5g42060834211unknown proteinF:unknown;P:unknown;C:cellular_component unknown;PO.I.C.G.H.G.
35.399.772.3At5g22290832289anac089 (Arabidopsis NAC domain containing protein 89)F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;PO.I.C.G.H.G.
35.099.7451.1At4g28520828970CRU3 (CRUCIFERIN 3)Encodes a 12S seed storage protein that is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds.O.I.C.G.H.G.
34.799.7107.1At1g55710842020unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
34.599.7303.5At5g42890834300SCP2 (STEROL CARRIER PROTEIN 2)F:sterol carrier activity, oxidoreductase activity;P:glyoxylate metabolic process, intracellular lipid transport, fatty acid beta-oxidation, seed germination;C:peroxisome;MFOPBO.I.C.G.H.G.
34.399.7177.8At5g06760830565late embryogenesis abundant group 1 domain-containing protein / LEA group 1 domain-containing proteinF:molecular_function unknown;P:embryonic development ending in seed dormancy, embryonic development;C:cellular_component unknown;PMBOFVO.I.C.G.H.G.
34.099.779.5At3g62810825456complex 1 family protein / LVR family proteinF:catalytic activity;P:unknown;C:unknown;MFPOO.I.C.G.H.G.
33.999.740.4At5g42290834234transcription activator-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.C.G.H.G.
33.499.7154.4At1g62710842569BETA-VPE (BETA VACUOLAR PROCESSING ENZYME)Encodes a vacuolar processing enzyme belonging to a novel group of cysteine proteases that is expressed specifically in seeds and is essential for the proper processing of storage proteins.O.I.C.G.H.G.
33.299.777.8At5g13360831177auxin-responsive GH3 family proteinF:unknown;P:response to auxin stimulus;C:cellular_component unknown;OBPMFO.I.C.G.H.G.
32.999.7175.3At2g21490816688LEA (DEHYDRIN LEA)F:molecular_function unknown;P:response to water, response to stress;C:cellular_component unknown;PMFOBVO.I.C.G.H.G.
32.899.784.2At4g22290828324ubiquitin thiolesteraseF:ubiquitin thiolesterase activity;P:ubiquitin-dependent protein catabolic process;C:unknown;PMBOO.I.C.G.H.G.
32.499.7155.6At1g01210839481DNA-directed RNA polymerase III family proteinF:in 6 functions;P:RNA elongation, regulation of transcription, DNA-dependent, transcription, regulation of transcription;C:nucleus;MOFAPO.I.C.G.H.G.
32.399.712.8At2g07000815270unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
32.299.7154.5At2g02850814816ARPN (PLANTACYANIN)Encodes plantacyanin one of blue copper proteins. Involved in anther development and pollination. Expressed in the transmitting tract of the pistil.O.I.C.G.H.G.
32.299.739.6At3g10450820209SCPL7 (SERINE CARBOXYPEPTIDASE-LIKE 7)F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFBOO.I.C.G.H.G.
31.999.796.6At5g61220836243complex 1 family protein / LVR family proteinF:catalytic activity;P:unknown;C:unknown;MFPOO.I.C.G.H.G.
31.699.725.7At3g09480820105histone H2B, putativeF:DNA binding;P:nucleosome assembly;C:nucleus, nucleosome;MPOFO.I.C.G.H.G.
31.299.7387.7At5g44120834435CRA1 (CRUCIFERINA)Encodes a 12S seed storage protein. The Landsberg erecta genome contains another copy of 12S globulin gene, CRA2, which is located tandemly with CRA1. Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds.O.I.C.G.H.G.
30.899.735.7At1g65560842867allyl alcohol dehydrogenase, putativeF:oxidoreductase activity, binding, zinc ion binding, catalytic activity;P:oxidation reduction, metabolic process;C:cellular_component unknown;BOMFPAO.I.C.G.H.G.
30.499.7131.3At2g15010815990thionin, putativePredicted to encode a PR (pathogenesis-related) protein. Belongs to the plant thionin (PR-13) family with the following members: At1g66100, At5g36910, At1g72260, At2g15010, At1g12663, At1g12660.O.I.C.G.H.G.
30.099.797.3At5g22470832308NAD+ ADP-ribosyltransferaseF:NAD+ ADP-ribosyltransferase activity;P:protein amino acid ADP-ribosylation;C:intracellular, nucleus;MOPFBVO.I.C.G.H.G.
29.099.7133.6At4g16160827308mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family proteinHomologous to pea OEP16 and barley pPORA (OEP16), a member of Arabidopsis OEP16 family. Two OEP16 genes are closely related to each other and are conserved in all land plants, OEP16-2, also named OEP16-S, and OEP16-1 (renamed OEP16-L) are result of the gene duplication event that occurred prior to divergence of bryophytes and seed plants. Predominantly expressed in seed and is not inducible by cold treatment. atOEP16-S gained an additional exon. The promoter region of atOEP16-S (but not atOEP16-L) contains multiple G-box ABA-responsive elements. The atOEP16-S promoter conferred developmentally regulated seed- and pollen-specific GUS expression in tobacco.O.I.C.G.H.G.
28.699.752.3At3g05190819683aminotransferase class IV family proteinF:catalytic activity;P:metabolic process;C:cellular_component unknown;OBPAFMO.I.C.G.H.G.
28.599.739.6At2g23240816856plant EC metallothionein-like family 15 proteinF:zinc ion binding;P:biological_process unknown;C:unknown;POMBO.I.C.G.H.G.
28.499.7136.8At2g38905818475hydrophobic protein, putative / low temperature and salt responsive protein, putativeF:unknown;P:hyperosmotic salinity response, response to cold;C:endomembrane system, integral to membrane;BFPMOO.I.C.G.H.G.
28.399.7152.7At2g47780819390rubber elongation factor (REF) protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
28.299.758.0At3g53970824564proteasome inhibitor-relatedF:molecular_function unknown;P:unknown;C:unknown;MFOBPVAO.I.C.G.H.G.
27.199.791.3At1g73940843731unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
27.099.748.6At4g29660829087EMB2752 (EMBRYO DEFECTIVE 2752)F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:cellular_component unknown;PO.I.C.G.H.G.
26.499.7107.8At3g50980824262XERO1 (DEHYDRIN XERO 1)F:molecular_function unknown;P:response to water, response to stress;C:cellular_component unknown;PMO.I.C.G.H.G.
26.099.796.1At3g11050820276ATFER2 (ferritin 2)F:oxidoreductase activity, ferric iron binding, binding, transition metal ion binding;P:response to oxidative stress, cellular iron ion homeostasis, response to abscisic acid stimulus, iron ion transport;C:chloroplast;MBPOAFO.I.C.G.H.G.
25.999.773.2At1g33265840221unknown proteinF:unknown;P:biological_process unknown;C:chloroplast, membrane;PMBOFO.I.C.G.H.G.
25.999.760.7At5g58920836009unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
25.999.711.8At1g32740840168protein binding / zinc ion bindingF:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MPOFVBO.I.C.G.H.G.
25.699.723.9At4g25420828645GA20OX1Encodes gibberellin 20-oxidase that is involved in the later steps of the gibberellin biosynthetic pathway. Regulated by a circadian clock. Weak expression response to far red light.O.I.C.G.H.G.
24.999.6277.3At5g03860831690MLS (MALATE SYNTHASE)Encodes a protein with malate synthase activity.O.I.C.G.H.G.
24.999.644.4At5g24130832478unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PMO.I.C.G.H.G.
24.499.692.1At3g28210822447PMZEncodes a putative zinc finger protein (PMZ).O.I.C.G.H.G.
24.399.667.2At2g28420817390lactoylglutathione lyase family protein / glyoxalase I family proteinF:lactoylglutathione lyase activity;P:carbohydrate metabolic process;C:cellular_component unknown;BOPMFAO.I.C.G.H.G.
23.999.680.2At1g13690837930ATE1AtE1 - stimulates the ATPase activity of DnaK/DnaJO.I.C.G.H.G.
23.599.6124.1At1g29980839877-F:unknown;P:biological_process unknown;C:plasma membrane, anchored to membrane;PBO.I.C.G.H.G.
23.399.672.2At1g76300843963SmD3 (snRNP core protein SmD3)F:molecular_function unknown;P:unknown;C:nuclear body, nucleolus, small nucleolar ribonucleoprotein complex, nucleus;MFOPO.I.C.G.H.G.
23.299.636.0At2g25720817113unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
23.299.635.0At3g14360820657lipase class 3 family proteinF:triacylglycerol lipase activity;P:lipid metabolic process;C:cellular_component unknown;FOPBMO.I.C.G.H.G.
23.299.618.0At4g11140826715CRF1 (CYTOKININ RESPONSE FACTOR 1)encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily. Also named as CRF1 (cytokinin response factor 1).O.I.C.G.H.G.
22.699.665.1At4g36910829844LEJ2 (LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 2)Has a cystathionine Beta-synthase domain.O.I.C.G.H.G.
22.599.632.5At5g51760835250AHG1 (ABA-hypersensitive germination 1)Encodes AHG1 (ABA-hypersensitive germination 1), a putative protein phosphatase 2C (PP2C). Expressed in seeds. AHG1 functions in seed development and germination.O.I.C.G.H.G.
22.499.6113.9At3g03640821201BGLU25 (BETA GLUCOSIDASE 25)Encodes beta-glucosidase (GLUC).O.I.C.G.H.G.
22.499.612.8At1g72570843589DNA binding / transcription factorF:transcription factor activity, DNA binding;P:organ morphogenesis, regulation of transcription, DNA-dependent;C:nucleus;POBVO.I.C.G.H.G.
22.199.6205.7At2g28490817397cupin family proteinF:nutrient reservoir activity;P:biological_process unknown;C:endomembrane system;BMPOFVAO.I.C.G.H.G.
22.099.654.3At5g51280835202DEAD-box protein abstrakt, putativeF:helicase activity, zinc ion binding, ATP-dependent helicase activity, nucleic acid binding, ATP binding;P:unknown;C:cellular_component unknown;BOMFPAVO.I.C.G.H.G.
22.099.622.5At1g26660839206c-myc binding protein, putative / prefoldin, putativeF:unfolded protein binding;P:protein folding;C:prefoldin complex;MFOPABO.I.C.G.H.G.



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