Microarray experiments to specifically-expressed genes

GSM ID GSM134311
Assay name Penfield_1-13_embryo-ABA_Rep1_ATH1
GSE experiment GSE5751: The early post-germinative embryo and endosperm transcriptomes in Arabidopsis

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
225.4100.0372.2At2g40170818608GEA6 (LATE EMBRYOGENESIS ABUNDANT 6)Encodes a group 1 LEA gene that is activated by direct binding of ABI5 to its promoter and is involved in response to ABA. Is required for normal seed development. Involved in regulating the timing of dessication tolerance and rate of water loss during seed maturation.O.I.C.G.H.G.
213.2100.0275.7At2g36640818236ATECP63 (EMBRYONIC CELL PROTEIN 63)Encodes putative phosphotyrosine protein belonging to late embryogenesis abundant (LEA) protein in group 3 that might be involved in maturation and desiccation tolerance of seeds. RFLP and CAPS mapping place it on chromosome 4 but the nucleotide sequence maps it to chromosome 2.O.I.C.G.H.G.
180.7100.042.5At2g24560816992carboxylesterase/ hydrolase, acting on ester bondsF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFMO.I.C.G.H.G.
172.1100.0252.1At2g41260818725M17Late-embryogenesis-abundant gene. Involved in the acquisition of desiccation tolerance during late phase of embryogenesis.O.I.C.G.H.G.
153.799.950.6At5g38780833869S-adenosyl-L-methionine:carboxyl methyltransferase family proteinF:S-adenosylmethionine-dependent methyltransferase activity, methyltransferase activity;P:biological_process unknown;C:cellular_component unknown;POBMFO.I.C.G.H.G.
144.799.9438.5At1g32560840150late embryogenesis abundant group 1 domain-containing protein / LEA group 1 domain-containing proteinF:molecular_function unknown;P:embryonic development ending in seed dormancy, embryonic development;C:cellular_component unknown;PMOO.I.C.G.H.G.
139.499.9138.2At5g44310834454late embryogenesis abundant domain-containing protein / LEA domain-containing proteinF:unknown;P:embryonic development ending in seed dormancy;C:unknown;OMBFPAVO.I.C.G.H.G.
138.499.9210.5At3g19920821530unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO.I.C.G.H.G.
131.499.9310.0At5g62490836369ATHVA22BPart of the AtHVA22 family. Protein expression is ABA- and stress-inducible.O.I.C.G.H.G.
130.099.9582.3At1g04560839491AWPM-19-like membrane family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
121.099.9186.6At3g53040824470late embryogenesis abundant protein, putative / LEA protein, putativeF:unknown;P:embryonic development ending in seed dormancy;C:unknown;MBOFPAVO.I.C.G.H.G.
117.199.9235.6At5g01300830983phosphatidylethanolamine-binding family proteinF:phosphatidylethanolamine binding;P:biological_process unknown;C:cellular_component unknown;BOAPFO.I.C.G.H.G.
110.299.9236.7At5g07330830624unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PO.I.C.G.H.G.
100.299.9341.2At2g35300818097late embryogenesis abundant group 1 domain-containing protein / LEA group 1 domain-containing proteinF:molecular_function unknown;P:embryonic development ending in seed dormancy, pollen tube development;C:cellular_component unknown;PO.I.C.G.H.G.
99.299.9305.8At5g66780836811unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
98.499.9227.5At2g21820816718unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
98.099.9352.9At1g75830843916LCR67Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.O.I.C.G.H.G.
93.899.9651.4At1g52690841701late embryogenesis abundant protein, putative / LEA protein, putativeF:molecular_function unknown;P:embryonic development ending in seed dormancy;C:cellular_component unknown;PBMOFVAO.I.C.G.H.G.
93.299.9171.8At3g12960820482unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
88.699.9345.4At5g14450831296GDSL-motif lipase/hydrolase family proteinF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:plant-type cell wall;PBFOMO.I.C.G.H.G.
83.199.9372.3At1g73190843653TIP3Moves to the Protein Storage Vacuole in a Golgi independent mannerO.I.C.G.H.G.
71.599.952.5At2g38340818414AP2 domain-containing transcription factor, putative (DRE2B)encodes a member of the DREB subfamily A-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are eight members in this subfamily including DREB2A AND DREB2B that are involved in response to drought.O.I.C.G.H.G.
68.199.9109.6At1g64110842716AAA-type ATPase family proteinF:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:endomembrane system;BOMFPAVO.I.C.G.H.G.
65.899.8181.6At2g41280818727M10Encodes a hydrophilic protein similar to Late Embryogenesis Activated (LEA) proteins expressed during embryogenesis, which are thought to be involved in the acquisition of dessication tolerance.O.I.C.G.H.G.
64.899.8301.6At5g50600835129AtHSD1 (hydroxysteroid dehydrogenase 1)F:oxidoreductase activity, binding, catalytic activity;P:response to brassinosteroid stimulus, response to abscisic acid stimulus;C:endomembrane system;BOMFPAVO.I.C.G.H.G.
60.599.8123.0At3g58450825014universal stress protein (USP) family proteinF:molecular_function unknown;P:response to stress;C:cellular_component unknown;BPAOFMO.I.C.G.H.G.
59.699.8297.4At1g48130841231ATPER1encodes a protein similar to the 1-cysteine (1-Cys) peroxiredoxin family of antioxidants. Expression is limited to seed (aleurone and embryo) and is not induced by ABA or drought.O.I.C.G.H.G.
56.299.8186.0At4g16160827308mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family proteinHomologous to pea OEP16 and barley pPORA (OEP16), a member of Arabidopsis OEP16 family. Two OEP16 genes are closely related to each other and are conserved in all land plants, OEP16-2, also named OEP16-S, and OEP16-1 (renamed OEP16-L) are result of the gene duplication event that occurred prior to divergence of bryophytes and seed plants. Predominantly expressed in seed and is not inducible by cold treatment. atOEP16-S gained an additional exon. The promoter region of atOEP16-S (but not atOEP16-L) contains multiple G-box ABA-responsive elements. The atOEP16-S promoter conferred developmentally regulated seed- and pollen-specific GUS expression in tobacco.O.I.C.G.H.G.
55.999.8235.2At1g54870841926binding / catalytic/ oxidoreductaseF:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:chloroplast;BOMFPAVO.I.C.G.H.G.
55.999.855.4At2g23240816856plant EC metallothionein-like family 15 proteinF:zinc ion binding;P:biological_process unknown;C:unknown;POMBO.I.C.G.H.G.
55.499.871.6At4g24150828515AtGRF8 (GROWTH-REGULATING FACTOR 8)Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Involved in leaf development and expressed in shoot and flower.O.I.C.G.H.G.
53.899.852.3At1g22985838906AP2 domain-containing transcription factor, putativeencodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily.O.I.C.G.H.G.
52.399.8151.7At3g50980824262XERO1 (DEHYDRIN XERO 1)F:molecular_function unknown;P:response to water, response to stress;C:cellular_component unknown;PMO.I.C.G.H.G.
50.899.876.3At4g27530828862unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
48.499.8530.3At4g28520828970CRU3 (CRUCIFERIN 3)Encodes a 12S seed storage protein that is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds.O.I.C.G.H.G.
48.299.8210.9At5g06760830565late embryogenesis abundant group 1 domain-containing protein / LEA group 1 domain-containing proteinF:molecular_function unknown;P:embryonic development ending in seed dormancy, embryonic development;C:cellular_component unknown;PMBOFVO.I.C.G.H.G.
48.299.8183.1At1g17490838322unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
47.899.8224.9At3g54940824659--O.I.C.G.H.G.
47.899.894.2At2g28420817390lactoylglutathione lyase family protein / glyoxalase I family proteinF:lactoylglutathione lyase activity;P:carbohydrate metabolic process;C:cellular_component unknown;BOPMFAO.I.C.G.H.G.
47.199.831.3At3g09480820105histone H2B, putativeF:DNA binding;P:nucleosome assembly;C:nucleus, nucleosome;MPOFO.I.C.G.H.G.
46.799.847.4At5g42290834234transcription activator-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.C.G.H.G.
45.699.857.1At1g16730838244unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.C.G.H.G.
45.599.8180.3At1g62710842569BETA-VPE (BETA VACUOLAR PROCESSING ENZYME)Encodes a vacuolar processing enzyme belonging to a novel group of cysteine proteases that is expressed specifically in seeds and is essential for the proper processing of storage proteins.O.I.C.G.H.G.
45.199.8119.4At5g22470832308NAD+ ADP-ribosyltransferaseF:NAD+ ADP-ribosyltransferase activity;P:protein amino acid ADP-ribosylation;C:intracellular, nucleus;MOPFBVO.I.C.G.H.G.
42.399.838.4At1g22600838866-F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPFO.I.C.G.H.G.
41.699.8282.1At2g28490817397cupin family proteinF:nutrient reservoir activity;P:biological_process unknown;C:endomembrane system;BMPOFVAO.I.C.G.H.G.
41.199.877.6At2g23110816843-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
40.399.8440.8At5g44120834435CRA1 (CRUCIFERINA)Encodes a 12S seed storage protein. The Landsberg erecta genome contains another copy of 12S globulin gene, CRA2, which is located tandemly with CRA1. Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds.O.I.C.G.H.G.
40.399.8193.9At2g21490816688LEA (DEHYDRIN LEA)F:molecular_function unknown;P:response to water, response to stress;C:cellular_component unknown;PMFOBVO.I.C.G.H.G.
39.799.841.0At3g18510821381unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
37.399.7115.0At3g11050820276ATFER2 (ferritin 2)F:oxidoreductase activity, ferric iron binding, binding, transition metal ion binding;P:response to oxidative stress, cellular iron ion homeostasis, response to abscisic acid stimulus, iron ion transport;C:chloroplast;MBPOAFO.I.C.G.H.G.
35.899.781.6At3g62810825456complex 1 family protein / LVR family proteinF:catalytic activity;P:unknown;C:unknown;MFPOO.I.C.G.H.G.
35.299.7141.5At2g15010815990thionin, putativePredicted to encode a PR (pathogenesis-related) protein. Belongs to the plant thionin (PR-13) family with the following members: At1g66100, At5g36910, At1g72260, At2g15010, At1g12663, At1g12660.O.I.C.G.H.G.
35.299.7140.2At3g05260819690short-chain dehydrogenase/reductase (SDR) family proteinF:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAVO.I.C.G.H.G.
34.899.732.4At4g24660828568ATHB22 (HOMEOBOX PROTEIN 22)F:transcription factor activity, DNA binding;P:embryonic development ending in seed dormancy;C:nucleus;PMO.I.C.G.H.G.
33.999.727.7At1g79200844261unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBO.I.C.G.H.G.
32.899.7164.4At2g47780819390rubber elongation factor (REF) protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
32.699.7102.4At1g43780840974scpl44 (serine carboxypeptidase-like 44)F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFBOO.I.C.G.H.G.
32.199.7340.6At5g54740835563protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding, nutrient reservoir activity;P:lipid transport, pollen development;C:endomembrane system;POO.I.C.G.H.G.
32.199.736.5At5g18450831963AP2 domain-containing transcription factor, putativeencodes a member of the DREB subfamily A-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are eight members in this subfamily including DREB2A AND DREB2B that are involved in response to drought.O.I.C.G.H.G.
32.099.713.8At1g77570844092DNA binding / transcription factorF:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:endomembrane system, nucleus;PMOFO.I.C.G.H.G.
31.799.763.4At3g15280820759unknown proteinF:molecular_function unknown;P:unknown;C:mitochondrion;PMO.I.C.G.H.G.
31.699.7132.0At3g53230824489cell division cycle protein 48, putative / CDC48, putativeF:hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding;P:response to cadmium ion;C:cytosol, nucleolus, plasma membrane;BOMFPAVO.I.C.G.H.G.
31.099.7152.2At1g01210839481DNA-directed RNA polymerase III family proteinF:in 6 functions;P:RNA elongation, regulation of transcription, DNA-dependent, transcription, regulation of transcription;C:nucleus;MOFAPO.I.C.G.H.G.
30.999.7265.2At3g22640821835PAP85F:nutrient reservoir activity;P:biological_process unknown;C:plant-type cell wall;POMO.I.C.G.H.G.
30.599.794.4At5g61220836243complex 1 family protein / LVR family proteinF:catalytic activity;P:unknown;C:unknown;MFPOO.I.C.G.H.G.
30.399.730.7At1g48660841288auxin-responsive GH3 family proteinF:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;OPBMFO.I.C.G.H.G.
30.199.737.5At5g51760835250AHG1 (ABA-hypersensitive germination 1)Encodes AHG1 (ABA-hypersensitive germination 1), a putative protein phosphatase 2C (PP2C). Expressed in seeds. AHG1 functions in seed development and germination.O.I.C.G.H.G.
29.999.7101.8At3g28210822447PMZEncodes a putative zinc finger protein (PMZ).O.I.C.G.H.G.
28.999.717.0At2g34740818039catalytic/ protein serine/threonine phosphataseF:protein serine/threonine phosphatase activity, catalytic activity;P:biological_process unknown;C:cellular_component unknown;MPOBFVAO.I.C.G.H.G.
28.799.757.5At4g36600829812-F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:unknown;BPOMFVAO.I.C.G.H.G.
27.199.739.7At2g38465818428unknown proteinF:molecular_function unknown;P:biological_process unknown;C:plasma membrane;PO.I.C.G.H.G.
26.999.730.5At5g50170835082C2 domain-containing protein / GRAM domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;MPFOO.I.C.G.H.G.
26.899.77.8At1g24851839087unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;OMFBPVO.I.C.G.H.G.
26.799.762.9At5g22290832289anac089 (Arabidopsis NAC domain containing protein 89)F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;PO.I.C.G.H.G.
26.499.7106.3At3g51810824344EM1 (LATE EMBRYOGENESIS ABUNDANT 1)Encodes a ABA-inducible protein that accumulates during seed maturation, in parallel with its corresponding mRNA but with a 3 d delay. During germination, AtEm1 protein undergoes two successive cleavages before being degraded. Both proteins are more stable than the corresponding mRNA. The gene can be activated by the basic leucine zipper transcription factor ABI5. Expressed predominantly in provascular tissues with the strongest expression in the root tip.O.I.C.G.H.G.
26.299.793.0At1g55710842020unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
26.099.7146.7At5g51940835269NRPB6AOne of two highly similar proteins that can serve as a non-catalytic subunit of nuclear DNA-dependent RNA polymerases II, IV and V; homologous to budding yeast RPB6 and the E. coli RNA polymerase omega subunit. Probably redundant with At2g04630.O.I.C.G.H.G.
25.999.7262.9At5g42890834300SCP2 (STEROL CARRIER PROTEIN 2)F:sterol carrier activity, oxidoreductase activity;P:glyoxylate metabolic process, intracellular lipid transport, fatty acid beta-oxidation, seed germination;C:peroxisome;MFOPBO.I.C.G.H.G.
25.599.797.1At2g20560816578DNAJ heat shock family proteinF:unfolded protein binding, heat shock protein binding;P:protein folding;C:cellular_component unknown;OBMFPAVO.I.C.G.H.G.
25.299.6317.3At3g02480821185ABA-responsive protein-relatedF:molecular_function unknown;P:response to water deprivation;C:cellular_component unknown;PMFO.I.C.G.H.G.
25.199.623.2At5g04000830279unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
24.799.674.9At1g27990839692unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
24.699.6176.8At1g16740838245ribosomal protein L20 family proteinF:structural constituent of ribosome, RNA binding;P:translation, ribosome biogenesis;C:ribosome, intracellular;BOPMO.I.C.G.H.G.
24.699.681.1At4g31830829312unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
24.699.660.5At5g20910832215zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:nucleus;PMOFVO.I.C.G.H.G.
24.199.652.2At1g72100843541late embryogenesis abundant domain-containing protein / LEA domain-containing proteinF:unknown;P:embryonic development ending in seed dormancy;C:endomembrane system;BPOMFAVO.I.C.G.H.G.
23.799.632.3At5g61880836309signaling molecule-relatedF:unknown;P:biological_process unknown;C:endomembrane system;MFPOO.I.C.G.H.G.
23.599.673.8At4g03320827972tic20-IV (TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 20-IV)F:unknown;P:unknown;C:unknown;PBO.I.C.G.H.G.
23.599.629.9At1g23070838915unknown proteinF:unknown;P:biological_process unknown;C:unknown;MPFOO.I.C.G.H.G.
23.499.643.0At5g24130832478unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PMO.I.C.G.H.G.
22.699.623.3At5g66110836743metal ion bindingF:metal ion binding;P:metal ion transport;C:plasma membrane;PFMO.I.C.G.H.G.
22.499.6156.0At4g30810829204scpl29 (serine carboxypeptidase-like 29)F:serine-type carboxypeptidase activity;P:proteolysis;C:vacuole;PMFOBO.I.C.G.H.G.
22.499.650.2At1g07500837264unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
22.099.6354.8At3g12580820438HSP70 (heat shock protein 70)F:ATP binding;P:in 8 processes;C:cytosol, mitochondrion, cell wall, plasma membrane;OBMFPVAO.I.C.G.H.G.
22.099.6223.1At3g15670820810late embryogenesis abundant protein, putative / LEA protein, putativeF:molecular_function unknown;P:embryonic development ending in seed dormancy;C:nucleus;BOMPFVAO.I.C.G.H.G.
21.899.616.9At2g38720818454MAP65-5 (MICROTUBULE-ASSOCIATED PROTEIN 65-5)F:microtubule binding;P:microtubule polymerization, anaphase;C:cortical microtubule, microtubule, preprophase band, spindle, phragmoplast;MOBFPAVO.I.C.G.H.G.
21.399.6177.5At2g02120814743PDF2.1Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.O.I.C.G.H.G.
21.399.621.6At5g503153771479transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
20.199.685.6At2g25890817130glycine-rich protein / oleosinF:molecular_function unknown;P:lipid storage;C:monolayer-surrounded lipid storage body, integral to membrane, membrane;PBO.I.C.G.H.G.



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