CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM134308

Assay name Penfield_1-10_embryo-control_Rep1_ATH1

GSE experiment GSE5751: The early post-germinative embryo and endosperm transcriptomes in Arabidopsis

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
164.3 99.9 37.0 At5g52220 835298 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPO O.I. C.G. H.G.
95.7 99.9 280.9 At2g47780 819390 rubber elongation factor (REF) protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
88.6 99.9 34.0 At2g38720 818454 MAP65-5 (MICROTUBULE-ASSOCIATED PROTEIN 65-5) F:microtubule binding;P:microtubule polymerization, anaphase;C:cortical microtubule, microtubule, preprophase band, spindle, phragmoplast;MOBFPAV O.I. C.G. H.G.
85.1 99.9 40.5 At1g34245 840324 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
84.5 99.9 157.2 At5g61220 836243 complex 1 family protein / LVR family protein F:catalytic activity;P:unknown;C:unknown;MFPO O.I. C.G. H.G.
83.7 99.9 73.3 At5g53660 835447 AtGRF7 (GROWTH-REGULATING FACTOR 7) Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Involved in leaf development and expressed in shoot and flower. O.I. C.G. H.G.
64.7 99.8 65.4 At5g57760 835884 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
54.6 99.8 84.0 At3g23800 821962 SBP3 (selenium-binding protein 3) F:selenium binding;P:unknown;C:cellular_component unknown;OMBPA O.I. C.G. H.G.
54.5 99.8 41.2 At1g48660 841288 auxin-responsive GH3 family protein F:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;OPBMF O.I. C.G. H.G.
53.9 99.8 47.8 At1g16790 838250 ribosomal protein-related F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast, chloroplast envelope;P O.I. C.G. H.G.
49.7 99.8 18.0 At2g14060 815891 S-adenosyl-L-methionine:carboxyl methyltransferase family protein encodes a protein whose sequence is similar to SAM:salicylic acid carboxyl methyltransferase (SAMT) (GI:6002712)(Clarkia breweri) and to SAM:benzoic acid carboxyl methyltransferase (BAMT)(GI:9789277)(Antirrhinum majus) O.I. C.G. H.G.
47.4 99.8 263.3 At4g21870 828276 26.5 kDa class P-related heat shock protein (HSP26.5-P) F:unknown;P:response to heat;C:cellular_component unknown;PBOFA O.I. C.G. H.G.
43.5 99.8 97.3 At5g64816 836604 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
41.5 99.8 26.4 At1g80340 844374 GA3OX2 (GIBBERELLIN 3-OXIDASE 2) Encodes a protein with gibberellin 3 β-hydroxylase activity. The protein was heterologously expressed in E. coli and shown to catalyze the hydroxylation of both GA9 and GA20. O.I. C.G. H.G.
39.6 99.8 325.1 At5g42890 834300 SCP2 (STEROL CARRIER PROTEIN 2) F:sterol carrier activity, oxidoreductase activity;P:glyoxylate metabolic process, intracellular lipid transport, fatty acid beta-oxidation, seed germination;C:peroxisome;MFOPB O.I. C.G. H.G.
39.2 99.8 64.6 At1g34640 840368 unknown protein F:unknown;P:N-terminal protein myristoylation;C:endomembrane system;P O.I. C.G. H.G.
38.4 99.8 183.5 At2g24020 816936 unknown protein F:unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast, chloroplast stroma, chloroplast envelope;BOP O.I. C.G. H.G.
38.1 99.8 110.7 At1g43780 840974 scpl44 (serine carboxypeptidase-like 44) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFBO O.I. C.G. H.G.
37.9 99.8 26.9 At4g39500 830104 CYP96A11 member of CYP96A O.I. C.G. H.G.
37.7 99.7 112.6 At2g19590 816478 ACO1 (ACC OXIDASE 1) encodes a protein whose sequence is similar to 1-aminocyclopropane-1-carboxylate oxidase O.I. C.G. H.G.
37.4 99.7 57.7 At5g58900 836007 myb family transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;PMOF O.I. C.G. H.G.
34.1 99.7 53.3 At5g48110 834863 terpene synthase/cyclase family protein F:lyase activity, magnesium ion binding;P:metabolic process;C:chloroplast;PMO O.I. C.G. H.G.
31.6 99.7 7.3 At4g10560 826648 MEE53 (maternal effect embryo arrest 53) F:protein binding, zinc ion binding;P:embryonic development ending in seed dormancy;C:cellular_component unknown;P O.I. C.G. H.G.
31.0 99.7 204.7 At1g73120 843643 unknown protein F:molecular_function unknown;P:response to oxidative stress;C:unknown;P O.I. C.G. H.G.
30.1 99.7 81.7 At3g09470 820104 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPOBA O.I. C.G. H.G.
30.0 99.7 200.9 At5g14450 831296 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:plant-type cell wall;PBFOM O.I. C.G. H.G.
29.1 99.7 158.1 At2g27190 817261 PAP12 (PURPLE ACID PHOSPHATASE 12) secreted purple acid phosphatase precursor O.I. C.G. H.G.
27.3 99.7 47.7 At1g60090 842304 BGLU4 (BETA GLUCOSIDASE 4) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;BOPMFA O.I. C.G. H.G.
27.2 99.7 62.2 At5g62980 836418 dihydroneopterin aldolase, putative F:dihydroneopterin aldolase activity;P:folic acid and derivative metabolic process;C:cellular_component unknown;BOPA O.I. C.G. H.G.
27.0 99.7 90.7 At1g64750 842783 ATDSS1(I) (ARABIDOPSIS THALIANA DELETION OF SUV3 SUPRESSOR 1(I)) F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPO O.I. C.G. H.G.
26.5 99.7 466.0 At3g06700 819855 60S ribosomal protein L29 (RPL29A) F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome, nucleolus;MOPF O.I. C.G. H.G.
25.9 99.7 155.1 At2g46390 819247 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
25.7 99.7 143.2 At3g06320 819806 ribosomal protein L33 family protein F:structural constituent of ribosome;P:translation;C:ribosome, intracellular, large ribosomal subunit;BOPMF O.I. C.G. H.G.
25.6 99.7 32.9 At3g18510 821381 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
25.1 99.6 179.7 At2g37120 818288 DNA-binding S1FA family protein F:DNA binding;P:regulation of transcription;C:endomembrane system, nucleus;P O.I. C.G. H.G.
25.0 99.6 55.0 At5g11160 830985 APT5 (Adenine phosphoribosyltransferase 5) F:adenine phosphoribosyltransferase activity;P:nucleoside metabolic process, adenine salvage, anaerobic respiration, nucleotide metabolic process;C:cellular_component unknown;BOAMFP O.I. C.G. H.G.
24.8 99.6 135.9 At1g01210 839481 DNA-directed RNA polymerase III family protein F:in 6 functions;P:RNA elongation, regulation of transcription, DNA-dependent, transcription, regulation of transcription;C:nucleus;MOFAP O.I. C.G. H.G.
24.7 99.6 45.5 At3g25940 822191 transcription factor S-II (TFIIS) domain-containing protein F:transcription factor activity, transcription regulator activity, DNA binding, zinc ion binding, nucleic acid binding;P:RNA elongation, regulation of transcription, DNA-dependent, regulation of transcription;C:nucleus;MFOAPV O.I. C.G. H.G.
24.1 99.6 26.4 At2g39500 818535 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
23.3 99.6 392.1 At2g25210 817059 60S ribosomal protein L39 (RPL39A) F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome;MAFOP O.I. C.G. H.G.
23.3 99.6 87.7 At1g55710 842020 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
22.6 99.6 511.2 At2g43460 818947 60S ribosomal protein L38 (RPL38A) F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic ribosome, cytosolic large ribosomal subunit, ribosome;MOFPA O.I. C.G. H.G.
22.5 99.6 35.4 At2g25720 817113 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
22.4 99.6 39.6 At3g03420 821258 Ku70-binding family protein F:binding;P:unknown;C:cellular_component unknown;FMOP O.I. C.G. H.G.
22.2 99.6 24.3 At1g34380 840340 5'-3' exonuclease family protein F:5'-3' exonuclease activity, DNA binding, catalytic activity;P:biological_process unknown;C:chloroplast;BOPV O.I. C.G. H.G.
21.6 99.6 21.8 At5g50315 3771479 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
21.4 99.6 276.2 At1g01170 839263 ozone-responsive stress-related protein, putative F:molecular_function unknown;P:response to stress;C:mitochondrion, membrane;P O.I. C.G. H.G.
20.4 99.6 263.7 At5g05370 830419 ubiquinol-cytochrome C reductase complex ubiquinone-binding protein, putative / ubiquinol-cytochrome C reductase complex 8.2 kDa protein, putative F:ubiquinol-cytochrome-c reductase activity;P:unknown;C:mitochondrial respiratory chain complex III;P O.I. C.G. H.G.
20.2 99.6 12.9 At1g11120 837653 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFB O.I. C.G. H.G.
20.1 99.6 113.9 At2g18390 816354 TTN5 (TITAN 5) Encodes a member of ARF-like GTPase family. A thaliana has 21 members, in two subfamilies, ARF and ARF-like (ARL) GTPases. Mutant has abnormal mitosis and cell cycle control during seed development. O.I. C.G. H.G.
20.1 99.6 63.6 At2g45860 819194 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
20.1 99.6 47.4 At2g32220 817781 60S ribosomal protein L27 (RPL27A) F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome, intracellular, membrane;MOFP O.I. C.G. H.G.
20.0 99.6 55.3 At5g45600 834599 GAS41 The GSA41 human homolog is expressed in nuclei and binds NuMA, a component of the nuclear matrix in interphase nuclei. In addition to Arabidopsis, GSA41 is found in Drosophila, C.elegans, yeast and man. O.I. C.G. H.G.
19.6 99.6 73.0 At2g21640 816702 - Encodes a protein of unknown function that is a marker for oxidative stress response. O.I. C.G. H.G.
19.3 99.6 37.9 At5g05990 830486 mitochondrial glycoprotein family protein / MAM33 family protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion, mitochondrial matrix;PFOM O.I. C.G. H.G.
19.2 99.6 310.2 At3g46430 823793 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion, mitochondrial respiratory chain complex III;P O.I. C.G. H.G.
18.9 99.5 94.3 At5g61310 836252 cytochrome c oxidase subunit Vc, putative / COX5C, putative F:cytochrome-c oxidase activity;P:unknown;C:mitochondrial respiratory chain, endomembrane system;P O.I. C.G. H.G.
18.6 99.5 29.2 At5g26731 832715 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
18.1 99.5 160.5 At3g45310 823669 cysteine proteinase, putative F:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis;C:endomembrane system;MOPBVAF O.I. C.G. H.G.
18.1 99.5 120.9 At2g44080 819014 ARL (ARGOS-LIKE) Encodes ARL, a gene similar to ARGOS involved in cell expansion-dependent organ growth. Upregulated by brassinosteroid. Acts downstream of BRI1. O.I. C.G. H.G.
18.0 99.5 59.6 At5g09270 830786 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
17.9 99.5 10.3 At1g77570 844092 DNA binding / transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:endomembrane system, nucleus;PMOF O.I. C.G. H.G.
17.8 99.5 41.0 At1g70350 843371 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
17.8 99.5 17.2 At1g52250 - - O.I. C.G. H.G.
17.5 99.5 64.7 At5g12190 831092 RNA recognition motif (RRM)-containing protein F:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:unknown;MFOPB O.I. C.G. H.G.
17.5 99.5 26.0 At1g23100 838918 10 kDa chaperonin, putative F:ATP binding;P:protein folding;C:mitochondrion;BOMPFV O.I. C.G. H.G.
17.3 99.5 19.7 At5g02220 831792 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
17.3 99.5 13.6 At3g51410 824304 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMBFO O.I. C.G. H.G.
17.2 99.5 11.1 At2g46990 819313 IAA20 (INDOLE-3-ACETIC ACID INDUCIBLE 20) Encodes a member of the Aux/IAA family of proteins implicated in auxin signaling. IAA20 lacks the conserved degron (domain II) found in many family members, and IAA20 fusion proteins are stable in Arabidopsis seedlings. IAA20 transcripts are induced by auxin treatment, and overexpression of IAA20 leads to defects in gravitropism, root development, root meristem maintenance, etiolation, and cotyledon vascular development. O.I. C.G. H.G.
17.1 99.5 41.3 At2g19385 816457 zinc ion binding F:zinc ion binding;P:biological_process unknown;C:intracellular;MOFPB O.I. C.G. H.G.
17.0 99.5 12.5 At5g47440 834792 phosphoinositide binding F:phosphoinositide binding;P:signal transduction;C:cellular_component unknown;PF O.I. C.G. H.G.
16.7 99.5 213.3 At4g32460 829381 - F:molecular_function unknown;P:biological_process unknown;C:plant-type cell wall;PB O.I. C.G. H.G.
16.6 99.5 107.5 At1g17490 838322 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
16.3 99.5 186.6 At4g36880 829841 CP1 (CYSTEINE PROTEINASE1) F:cysteine-type peptidase activity, cysteine-type endopeptidase activity;P:proteolysis, response to gibberellin stimulus, response to red light;C:endomembrane system;MOPVBAF O.I. C.G. H.G.
16.1 99.5 142.7 At1g02640 837940 BXL2 (BETA-XYLOSIDASE 2) encodes a protein similar to a beta-xylosidase located in the extracellular matrix. This is a member of glycosyl hydrolase family 3 and has six other closely related members. O.I. C.G. H.G.
16.0 99.5 54.1 At4g39510 830105 CYP96A12 member of CYP96A O.I. C.G. H.G.
15.6 99.5 209.6 At2g31490 817707 unknown protein F:molecular_function unknown;P:photorespiration;C:mitochondrion, mitochondrial membrane, respiratory chain complex I;P O.I. C.G. H.G.
15.6 99.5 130.3 At4g30810 829204 scpl29 (serine carboxypeptidase-like 29) F:serine-type carboxypeptidase activity;P:proteolysis;C:vacuole;PMFOB O.I. C.G. H.G.
15.4 99.5 336.3 At1g67350 843056 unknown protein F:molecular_function unknown;P:photorespiration;C:mitochondrial membrane, respiratory chain complex I;P O.I. C.G. H.G.
15.2 99.4 112.1 At5g51940 835269 NRPB6A One of two highly similar proteins that can serve as a non-catalytic subunit of nuclear DNA-dependent RNA polymerases II, IV and V; homologous to budding yeast RPB6 and the E. coli RNA polymerase omega subunit. Probably redundant with At2g04630. O.I. C.G. H.G.
15.1 99.4 72.0 At5g53940 835477 yippee family protein F:unknown;P:biological_process unknown;C:unknown;MFPO O.I. C.G. H.G.
14.9 99.4 59.9 At5g51960 835271 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
14.8 99.4 40.3 At1g73177 843651 BNS (BONSAI) The BONSAI gene encodes a protein with similarity to the APC13 component of the Anaphase Promoting Complex. Plants with lowered level of BONSAI expression, resulting from hypomethylation, RNAi knock-down, or a T-DNA insertion show some abnormalities in shoot and inflorescence development. O.I. C.G. H.G.
14.5 99.4 240.4 At3g02480 821185 ABA-responsive protein-related F:molecular_function unknown;P:response to water deprivation;C:cellular_component unknown;PMF O.I. C.G. H.G.
14.3 99.4 26.9 At2g19720 816491 rps15ab (ribosomal protein S15A B) F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit;BOMPAF O.I. C.G. H.G.
14.2 99.4 20.7 At4g24660 828568 ATHB22 (HOMEOBOX PROTEIN 22) F:transcription factor activity, DNA binding;P:embryonic development ending in seed dormancy;C:nucleus;PM O.I. C.G. H.G.
14.1 99.4 401.4 At2g05710 815120 aconitate hydratase, cytoplasmic, putative / citrate hydro-lyase/aconitase, putative Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds. O.I. C.G. H.G.
14.1 99.4 23.1 At3g09700 820127 DNAJ heat shock N-terminal domain-containing protein F:heat shock protein binding;P:protein folding;C:unknown;OMBFPV O.I. C.G. H.G.
14.0 99.4 206.2 At3g10090 820170 40S ribosomal protein S28 (RPS28A) F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic small ribosomal subunit, cytosolic ribosome, ribosome, cell wall;MOAPF O.I. C.G. H.G.
14.0 99.4 85.6 At3g48460 824005 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:glycerol biosynthetic process, lipid metabolic process;C:endomembrane system;PBOFM O.I. C.G. H.G.
14.0 99.4 73.5 At1g16000 838170 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
14.0 99.4 51.9 At5g60890 836210 MYB34 (MYB DOMAIN PROTEIN 34) Myb-like transcription factor that modulates expression of ASA1, a key point of control in the tryptophan pathway; mutant has deregulated expression of ASA1 in dominant allele. Loss of function allele suggests ATR1 also functions at a control point for regulating indole glucosinolate homeostasis. O.I. C.G. H.G.
14.0 99.4 17.4 At3g07130 819899 PAP15 (PURPLE ACID PHOSPHATASE 15) F:protein serine/threonine phosphatase activity, acid phosphatase activity;P:biological_process unknown;C:endomembrane system;BPOMFA O.I. C.G. H.G.
13.8 99.4 370.8 At2g22170 816751 lipid-associated family protein F:molecular_function unknown;P:biological_process unknown;C:thylakoid, chloroplast, membrane;PMO O.I. C.G. H.G.
13.8 99.4 206.5 At5g03860 831690 MLS (MALATE SYNTHASE) Encodes a protein with malate synthase activity. O.I. C.G. H.G.
13.8 99.4 115.6 At5g41010 834103 NRPB12 Non-catalytic subunit common to nuclear DNA-dependent RNA polymerases II, IV and V; homologous to budding yeast RPB12. O.I. C.G. H.G.
13.8 99.4 109.6 At5g48870 834945 SAD1 (SUPERSENSITIVE TO ABA AND DROUGHT 1) SAD1 encodes a polypeptide similar to multifunctional Sm-like snRNP proteins that are required for mRNA splicing, export, and degradation. Mutation in this gene increases plant sensitivity to drought stress and ABA in seed germination, root growth, and the expression of some stress-responsive genes. O.I. C.G. H.G.
13.8 99.4 22.3 At4g29430 829064 rps15ae (ribosomal protein S15A E) F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, mitochondrion, cytosolic ribosome, vacuole;BOMAPF O.I. C.G. H.G.
13.6 99.4 166.5 At2g30970 817648 ASP1 (ASPARTATE AMINOTRANSFERASE 1) ASPARTATE AMINOTRANSFERASE 1 O.I. C.G. H.G.
13.6 99.4 19.4 At1g17700 838346 PRA1.F1 (PRENYLATED RAB ACCEPTOR 1.F1) F:molecular_function unknown;P:vesicle-mediated transport;C:endoplasmic reticulum;PMOF O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
164.3	99.9	37.0	At5g52220	835298	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPO	O.I.	C.G.	H.G.
95.7	99.9	280.9	At2g47780	819390	rubber elongation factor (REF) protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
88.6	99.9	34.0	At2g38720	818454	MAP65-5 (MICROTUBULE-ASSOCIATED PROTEIN 65-5)	F:microtubule binding;P:microtubule polymerization, anaphase;C:cortical microtubule, microtubule, preprophase band, spindle, phragmoplast;MOBFPAV	O.I.	C.G.	H.G.
85.1	99.9	40.5	At1g34245	840324	-	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
84.5	99.9	157.2	At5g61220	836243	complex 1 family protein / LVR family protein	F:catalytic activity;P:unknown;C:unknown;MFPO	O.I.	C.G.	H.G.
83.7	99.9	73.3	At5g53660	835447	AtGRF7 (GROWTH-REGULATING FACTOR 7)	Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Involved in leaf development and expressed in shoot and flower.	O.I.	C.G.	H.G.
64.7	99.8	65.4	At5g57760	835884	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
54.6	99.8	84.0	At3g23800	821962	SBP3 (selenium-binding protein 3)	F:selenium binding;P:unknown;C:cellular_component unknown;OMBPA	O.I.	C.G.	H.G.
54.5	99.8	41.2	At1g48660	841288	auxin-responsive GH3 family protein	F:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;OPBMF	O.I.	C.G.	H.G.
53.9	99.8	47.8	At1g16790	838250	ribosomal protein-related	F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast, chloroplast envelope;P	O.I.	C.G.	H.G.
49.7	99.8	18.0	At2g14060	815891	S-adenosyl-L-methionine:carboxyl methyltransferase family protein	encodes a protein whose sequence is similar to SAM:salicylic acid carboxyl methyltransferase (SAMT) (GI:6002712)(Clarkia breweri) and to SAM:benzoic acid carboxyl methyltransferase (BAMT)(GI:9789277)(Antirrhinum majus)	O.I.	C.G.	H.G.
47.4	99.8	263.3	At4g21870	828276	26.5 kDa class P-related heat shock protein (HSP26.5-P)	F:unknown;P:response to heat;C:cellular_component unknown;PBOFA	O.I.	C.G.	H.G.
43.5	99.8	97.3	At5g64816	836604	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
41.5	99.8	26.4	At1g80340	844374	GA3OX2 (GIBBERELLIN 3-OXIDASE 2)	Encodes a protein with gibberellin 3 β-hydroxylase activity. The protein was heterologously expressed in E. coli and shown to catalyze the hydroxylation of both GA9 and GA20.	O.I.	C.G.	H.G.
39.6	99.8	325.1	At5g42890	834300	SCP2 (STEROL CARRIER PROTEIN 2)	F:sterol carrier activity, oxidoreductase activity;P:glyoxylate metabolic process, intracellular lipid transport, fatty acid beta-oxidation, seed germination;C:peroxisome;MFOPB	O.I.	C.G.	H.G.
39.2	99.8	64.6	At1g34640	840368	unknown protein	F:unknown;P:N-terminal protein myristoylation;C:endomembrane system;P	O.I.	C.G.	H.G.
38.4	99.8	183.5	At2g24020	816936	unknown protein	F:unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast, chloroplast stroma, chloroplast envelope;BOP	O.I.	C.G.	H.G.
38.1	99.8	110.7	At1g43780	840974	scpl44 (serine carboxypeptidase-like 44)	F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFBO	O.I.	C.G.	H.G.
37.9	99.8	26.9	At4g39500	830104	CYP96A11	member of CYP96A	O.I.	C.G.	H.G.
37.7	99.7	112.6	At2g19590	816478	ACO1 (ACC OXIDASE 1)	encodes a protein whose sequence is similar to 1-aminocyclopropane-1-carboxylate oxidase	O.I.	C.G.	H.G.
37.4	99.7	57.7	At5g58900	836007	myb family transcription factor	F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;PMOF	O.I.	C.G.	H.G.
34.1	99.7	53.3	At5g48110	834863	terpene synthase/cyclase family protein	F:lyase activity, magnesium ion binding;P:metabolic process;C:chloroplast;PMO	O.I.	C.G.	H.G.
31.6	99.7	7.3	At4g10560	826648	MEE53 (maternal effect embryo arrest 53)	F:protein binding, zinc ion binding;P:embryonic development ending in seed dormancy;C:cellular_component unknown;P	O.I.	C.G.	H.G.
31.0	99.7	204.7	At1g73120	843643	unknown protein	F:molecular_function unknown;P:response to oxidative stress;C:unknown;P	O.I.	C.G.	H.G.
30.1	99.7	81.7	At3g09470	820104	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPOBA	O.I.	C.G.	H.G.
30.0	99.7	200.9	At5g14450	831296	GDSL-motif lipase/hydrolase family protein	F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:plant-type cell wall;PBFOM	O.I.	C.G.	H.G.
29.1	99.7	158.1	At2g27190	817261	PAP12 (PURPLE ACID PHOSPHATASE 12)	secreted purple acid phosphatase precursor	O.I.	C.G.	H.G.
27.3	99.7	47.7	At1g60090	842304	BGLU4 (BETA GLUCOSIDASE 4)	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;BOPMFA	O.I.	C.G.	H.G.
27.2	99.7	62.2	At5g62980	836418	dihydroneopterin aldolase, putative	F:dihydroneopterin aldolase activity;P:folic acid and derivative metabolic process;C:cellular_component unknown;BOPA	O.I.	C.G.	H.G.
27.0	99.7	90.7	At1g64750	842783	ATDSS1(I) (ARABIDOPSIS THALIANA DELETION OF SUV3 SUPRESSOR 1(I))	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPO	O.I.	C.G.	H.G.
26.5	99.7	466.0	At3g06700	819855	60S ribosomal protein L29 (RPL29A)	F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome, nucleolus;MOPF	O.I.	C.G.	H.G.
25.9	99.7	155.1	At2g46390	819247	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
25.7	99.7	143.2	At3g06320	819806	ribosomal protein L33 family protein	F:structural constituent of ribosome;P:translation;C:ribosome, intracellular, large ribosomal subunit;BOPMF	O.I.	C.G.	H.G.
25.6	99.7	32.9	At3g18510	821381	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
25.1	99.6	179.7	At2g37120	818288	DNA-binding S1FA family protein	F:DNA binding;P:regulation of transcription;C:endomembrane system, nucleus;P	O.I.	C.G.	H.G.
25.0	99.6	55.0	At5g11160	830985	APT5 (Adenine phosphoribosyltransferase 5)	F:adenine phosphoribosyltransferase activity;P:nucleoside metabolic process, adenine salvage, anaerobic respiration, nucleotide metabolic process;C:cellular_component unknown;BOAMFP	O.I.	C.G.	H.G.
24.8	99.6	135.9	At1g01210	839481	DNA-directed RNA polymerase III family protein	F:in 6 functions;P:RNA elongation, regulation of transcription, DNA-dependent, transcription, regulation of transcription;C:nucleus;MOFAP	O.I.	C.G.	H.G.
24.7	99.6	45.5	At3g25940	822191	transcription factor S-II (TFIIS) domain-containing protein	F:transcription factor activity, transcription regulator activity, DNA binding, zinc ion binding, nucleic acid binding;P:RNA elongation, regulation of transcription, DNA-dependent, regulation of transcription;C:nucleus;MFOAPV	O.I.	C.G.	H.G.
24.1	99.6	26.4	At2g39500	818535	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
23.3	99.6	392.1	At2g25210	817059	60S ribosomal protein L39 (RPL39A)	F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome;MAFOP	O.I.	C.G.	H.G.
23.3	99.6	87.7	At1g55710	842020	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
22.6	99.6	511.2	At2g43460	818947	60S ribosomal protein L38 (RPL38A)	F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic ribosome, cytosolic large ribosomal subunit, ribosome;MOFPA	O.I.	C.G.	H.G.
22.5	99.6	35.4	At2g25720	817113	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
22.4	99.6	39.6	At3g03420	821258	Ku70-binding family protein	F:binding;P:unknown;C:cellular_component unknown;FMOP	O.I.	C.G.	H.G.
22.2	99.6	24.3	At1g34380	840340	5'-3' exonuclease family protein	F:5'-3' exonuclease activity, DNA binding, catalytic activity;P:biological_process unknown;C:chloroplast;BOPV	O.I.	C.G.	H.G.
21.6	99.6	21.8	At5g50315	3771479	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
21.4	99.6	276.2	At1g01170	839263	ozone-responsive stress-related protein, putative	F:molecular_function unknown;P:response to stress;C:mitochondrion, membrane;P	O.I.	C.G.	H.G.
20.4	99.6	263.7	At5g05370	830419	ubiquinol-cytochrome C reductase complex ubiquinone-binding protein, putative / ubiquinol-cytochrome C reductase complex 8.2 kDa protein, putative	F:ubiquinol-cytochrome-c reductase activity;P:unknown;C:mitochondrial respiratory chain complex III;P	O.I.	C.G.	H.G.
20.2	99.6	12.9	At1g11120	837653	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFB	O.I.	C.G.	H.G.
20.1	99.6	113.9	At2g18390	816354	TTN5 (TITAN 5)	Encodes a member of ARF-like GTPase family. A thaliana has 21 members, in two subfamilies, ARF and ARF-like (ARL) GTPases. Mutant has abnormal mitosis and cell cycle control during seed development.	O.I.	C.G.	H.G.
20.1	99.6	63.6	At2g45860	819194	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
20.1	99.6	47.4	At2g32220	817781	60S ribosomal protein L27 (RPL27A)	F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome, intracellular, membrane;MOFP	O.I.	C.G.	H.G.
20.0	99.6	55.3	At5g45600	834599	GAS41	The GSA41 human homolog is expressed in nuclei and binds NuMA, a component of the nuclear matrix in interphase nuclei. In addition to Arabidopsis, GSA41 is found in Drosophila, C.elegans, yeast and man.	O.I.	C.G.	H.G.
19.6	99.6	73.0	At2g21640	816702	-	Encodes a protein of unknown function that is a marker for oxidative stress response.	O.I.	C.G.	H.G.
19.3	99.6	37.9	At5g05990	830486	mitochondrial glycoprotein family protein / MAM33 family protein	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion, mitochondrial matrix;PFOM	O.I.	C.G.	H.G.
19.2	99.6	310.2	At3g46430	823793	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion, mitochondrial respiratory chain complex III;P	O.I.	C.G.	H.G.
18.9	99.5	94.3	At5g61310	836252	cytochrome c oxidase subunit Vc, putative / COX5C, putative	F:cytochrome-c oxidase activity;P:unknown;C:mitochondrial respiratory chain, endomembrane system;P	O.I.	C.G.	H.G.
18.6	99.5	29.2	At5g26731	832715	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
18.1	99.5	160.5	At3g45310	823669	cysteine proteinase, putative	F:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis;C:endomembrane system;MOPBVAF	O.I.	C.G.	H.G.
18.1	99.5	120.9	At2g44080	819014	ARL (ARGOS-LIKE)	Encodes ARL, a gene similar to ARGOS involved in cell expansion-dependent organ growth. Upregulated by brassinosteroid. Acts downstream of BRI1.	O.I.	C.G.	H.G.
18.0	99.5	59.6	At5g09270	830786	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
17.9	99.5	10.3	At1g77570	844092	DNA binding / transcription factor	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:endomembrane system, nucleus;PMOF	O.I.	C.G.	H.G.
17.8	99.5	41.0	At1g70350	843371	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
17.8	99.5	17.2	At1g52250		-	-	O.I.	C.G.	H.G.
17.5	99.5	64.7	At5g12190	831092	RNA recognition motif (RRM)-containing protein	F:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:unknown;MFOPB	O.I.	C.G.	H.G.
17.5	99.5	26.0	At1g23100	838918	10 kDa chaperonin, putative	F:ATP binding;P:protein folding;C:mitochondrion;BOMPFV	O.I.	C.G.	H.G.
17.3	99.5	19.7	At5g02220	831792	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
17.3	99.5	13.6	At3g51410	824304	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMBFO	O.I.	C.G.	H.G.
17.2	99.5	11.1	At2g46990	819313	IAA20 (INDOLE-3-ACETIC ACID INDUCIBLE 20)	Encodes a member of the Aux/IAA family of proteins implicated in auxin signaling. IAA20 lacks the conserved degron (domain II) found in many family members, and IAA20 fusion proteins are stable in Arabidopsis seedlings. IAA20 transcripts are induced by auxin treatment, and overexpression of IAA20 leads to defects in gravitropism, root development, root meristem maintenance, etiolation, and cotyledon vascular development.	O.I.	C.G.	H.G.
17.1	99.5	41.3	At2g19385	816457	zinc ion binding	F:zinc ion binding;P:biological_process unknown;C:intracellular;MOFPB	O.I.	C.G.	H.G.
17.0	99.5	12.5	At5g47440	834792	phosphoinositide binding	F:phosphoinositide binding;P:signal transduction;C:cellular_component unknown;PF	O.I.	C.G.	H.G.
16.7	99.5	213.3	At4g32460	829381	-	F:molecular_function unknown;P:biological_process unknown;C:plant-type cell wall;PB	O.I.	C.G.	H.G.
16.6	99.5	107.5	At1g17490	838322	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
16.3	99.5	186.6	At4g36880	829841	CP1 (CYSTEINE PROTEINASE1)	F:cysteine-type peptidase activity, cysteine-type endopeptidase activity;P:proteolysis, response to gibberellin stimulus, response to red light;C:endomembrane system;MOPVBAF	O.I.	C.G.	H.G.
16.1	99.5	142.7	At1g02640	837940	BXL2 (BETA-XYLOSIDASE 2)	encodes a protein similar to a beta-xylosidase located in the extracellular matrix. This is a member of glycosyl hydrolase family 3 and has six other closely related members.	O.I.	C.G.	H.G.
16.0	99.5	54.1	At4g39510	830105	CYP96A12	member of CYP96A	O.I.	C.G.	H.G.
15.6	99.5	209.6	At2g31490	817707	unknown protein	F:molecular_function unknown;P:photorespiration;C:mitochondrion, mitochondrial membrane, respiratory chain complex I;P	O.I.	C.G.	H.G.
15.6	99.5	130.3	At4g30810	829204	scpl29 (serine carboxypeptidase-like 29)	F:serine-type carboxypeptidase activity;P:proteolysis;C:vacuole;PMFOB	O.I.	C.G.	H.G.
15.4	99.5	336.3	At1g67350	843056	unknown protein	F:molecular_function unknown;P:photorespiration;C:mitochondrial membrane, respiratory chain complex I;P	O.I.	C.G.	H.G.
15.2	99.4	112.1	At5g51940	835269	NRPB6A	One of two highly similar proteins that can serve as a non-catalytic subunit of nuclear DNA-dependent RNA polymerases II, IV and V; homologous to budding yeast RPB6 and the E. coli RNA polymerase omega subunit. Probably redundant with At2g04630.	O.I.	C.G.	H.G.
15.1	99.4	72.0	At5g53940	835477	yippee family protein	F:unknown;P:biological_process unknown;C:unknown;MFPO	O.I.	C.G.	H.G.
14.9	99.4	59.9	At5g51960	835271	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
14.8	99.4	40.3	At1g73177	843651	BNS (BONSAI)	The BONSAI gene encodes a protein with similarity to the APC13 component of the Anaphase Promoting Complex. Plants with lowered level of BONSAI expression, resulting from hypomethylation, RNAi knock-down, or a T-DNA insertion show some abnormalities in shoot and inflorescence development.	O.I.	C.G.	H.G.
14.5	99.4	240.4	At3g02480	821185	ABA-responsive protein-related	F:molecular_function unknown;P:response to water deprivation;C:cellular_component unknown;PMF	O.I.	C.G.	H.G.
14.3	99.4	26.9	At2g19720	816491	rps15ab (ribosomal protein S15A B)	F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit;BOMPAF	O.I.	C.G.	H.G.
14.2	99.4	20.7	At4g24660	828568	ATHB22 (HOMEOBOX PROTEIN 22)	F:transcription factor activity, DNA binding;P:embryonic development ending in seed dormancy;C:nucleus;PM	O.I.	C.G.	H.G.
14.1	99.4	401.4	At2g05710	815120	aconitate hydratase, cytoplasmic, putative / citrate hydro-lyase/aconitase, putative	Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds.	O.I.	C.G.	H.G.
14.1	99.4	23.1	At3g09700	820127	DNAJ heat shock N-terminal domain-containing protein	F:heat shock protein binding;P:protein folding;C:unknown;OMBFPV	O.I.	C.G.	H.G.
14.0	99.4	206.2	At3g10090	820170	40S ribosomal protein S28 (RPS28A)	F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic small ribosomal subunit, cytosolic ribosome, ribosome, cell wall;MOAPF	O.I.	C.G.	H.G.
14.0	99.4	85.6	At3g48460	824005	GDSL-motif lipase/hydrolase family protein	F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:glycerol biosynthetic process, lipid metabolic process;C:endomembrane system;PBOFM	O.I.	C.G.	H.G.
14.0	99.4	73.5	At1g16000	838170	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
14.0	99.4	51.9	At5g60890	836210	MYB34 (MYB DOMAIN PROTEIN 34)	Myb-like transcription factor that modulates expression of ASA1, a key point of control in the tryptophan pathway; mutant has deregulated expression of ASA1 in dominant allele. Loss of function allele suggests ATR1 also functions at a control point for regulating indole glucosinolate homeostasis.	O.I.	C.G.	H.G.
14.0	99.4	17.4	At3g07130	819899	PAP15 (PURPLE ACID PHOSPHATASE 15)	F:protein serine/threonine phosphatase activity, acid phosphatase activity;P:biological_process unknown;C:endomembrane system;BPOMFA	O.I.	C.G.	H.G.
13.8	99.4	370.8	At2g22170	816751	lipid-associated family protein	F:molecular_function unknown;P:biological_process unknown;C:thylakoid, chloroplast, membrane;PMO	O.I.	C.G.	H.G.
13.8	99.4	206.5	At5g03860	831690	MLS (MALATE SYNTHASE)	Encodes a protein with malate synthase activity.	O.I.	C.G.	H.G.
13.8	99.4	115.6	At5g41010	834103	NRPB12	Non-catalytic subunit common to nuclear DNA-dependent RNA polymerases II, IV and V; homologous to budding yeast RPB12.	O.I.	C.G.	H.G.
13.8	99.4	109.6	At5g48870	834945	SAD1 (SUPERSENSITIVE TO ABA AND DROUGHT 1)	SAD1 encodes a polypeptide similar to multifunctional Sm-like snRNP proteins that are required for mRNA splicing, export, and degradation. Mutation in this gene increases plant sensitivity to drought stress and ABA in seed germination, root growth, and the expression of some stress-responsive genes.	O.I.	C.G.	H.G.
13.8	99.4	22.3	At4g29430	829064	rps15ae (ribosomal protein S15A E)	F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, mitochondrion, cytosolic ribosome, vacuole;BOMAPF	O.I.	C.G.	H.G.
13.6	99.4	166.5	At2g30970	817648	ASP1 (ASPARTATE AMINOTRANSFERASE 1)	ASPARTATE AMINOTRANSFERASE 1	O.I.	C.G.	H.G.
13.6	99.4	19.4	At1g17700	838346	PRA1.F1 (PRENYLATED RAB ACCEPTOR 1.F1)	F:molecular_function unknown;P:vesicle-mediated transport;C:endoplasmic reticulum;PMOF	O.I.	C.G.	H.G.

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GSM ID	GSM134308
Assay name	Penfield_1-10_embryo-control_Rep1_ATH1
GSE experiment	GSE5751: The early post-germinative embryo and endosperm transcriptomes in Arabidopsis

Microarray experiments to specifically-expressed genes

GSM ID GSM134308 Assay name Penfield_1-10_embryo-control_Rep1_ATH1 GSE experiment GSE5751: The early post-germinative embryo and endosperm transcriptomes in Arabidopsis

GSM ID GSM134308

Assay name Penfield_1-10_embryo-control_Rep1_ATH1

GSE experiment GSE5751: The early post-germinative embryo and endosperm transcriptomes in Arabidopsis