CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM134307

Assay name Penfield_1-9_endosperm-PAC_Rep3_ATH1

GSE experiment GSE5751: The early post-germinative embryo and endosperm transcriptomes in Arabidopsis

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
703.4 100.0 289.0 At5g10120 830876 ethylene insensitive 3 family protein F:transcription factor activity;P:regulation of transcription;C:nucleus;POM O.I. C.G. H.G.
344.3 100.0 720.6 At5g05290 830411 ATEXPA2 (ARABIDOPSIS THALIANA EXPANSIN A2) Encodes an expansin. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) O.I. C.G. H.G.
288.0 100.0 624.0 At1g73120 843643 unknown protein F:molecular_function unknown;P:response to oxidative stress;C:unknown;P O.I. C.G. H.G.
286.1 100.0 58.4 At2g27300 817273 NTL8 (NTM1-LIKE 8) F:transcription factor activity;P:multicellular organismal development, response to salt stress, seed germination;C:plasma membrane;P O.I. C.G. H.G.
259.3 100.0 420.6 At1g73220 843656 AtOCT1 (Arabidopsis thaliana ORGANIC CATION/CARNITINE TRANSPORTER1) F:carnitine transporter activity, transporter activity, carbohydrate transmembrane transporter activity;P:unknown;C:plasma membrane, membrane;BMFPOA O.I. C.G. H.G.
218.6 100.0 389.8 At1g17490 838322 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
145.5 99.9 105.3 At5g54300 835518 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPOFBA O.I. C.G. H.G.
130.5 99.9 485.6 At2g27380 817282 ATEPR1 Encodes an extensin like gene involved in seed germination. O.I. C.G. H.G.
129.9 99.9 193.4 At3g53040 824470 late embryogenesis abundant protein, putative / LEA protein, putative F:unknown;P:embryonic development ending in seed dormancy;C:unknown;MBOFPAV O.I. C.G. H.G.
129.7 99.9 388.2 At2g35300 818097 late embryogenesis abundant group 1 domain-containing protein / LEA group 1 domain-containing protein F:molecular_function unknown;P:embryonic development ending in seed dormancy, pollen tube development;C:cellular_component unknown;P O.I. C.G. H.G.
128.4 99.9 175.7 At4g18910 827626 NIP1 Encodes an aquaporin homolog. Functions in arsenite transport and tolerance. O.I. C.G. H.G.
125.7 99.9 211.6 At2g36640 818236 ATECP63 (EMBRYONIC CELL PROTEIN 63) Encodes putative phosphotyrosine protein belonging to late embryogenesis abundant (LEA) protein in group 3 that might be involved in maturation and desiccation tolerance of seeds. RFLP and CAPS mapping place it on chromosome 4 but the nucleotide sequence maps it to chromosome 2. O.I. C.G. H.G.
117.9 99.9 92.5 At2g46950 819309 CYP709B2 member of CYP709B O.I. C.G. H.G.
116.6 99.9 219.4 At1g17020 838272 SRG1 (SENESCENCE-RELATED GENE 1) Encodes a novel member of the Fe(II)/ascorbate oxidase gene family; senescence-related gene. O.I. C.G. H.G.
112.7 99.9 73.7 At2g42430 818843 LBD16 (LATERAL ORGAN BOUNDARIES-DOMAIN 16) LOB-domain protein gene LBD16. This gene contains one auxin-responsive element (AuxRE). O.I. C.G. H.G.
110.9 99.9 486.5 At4g36880 829841 CP1 (CYSTEINE PROTEINASE1) F:cysteine-type peptidase activity, cysteine-type endopeptidase activity;P:proteolysis, response to gibberellin stimulus, response to red light;C:endomembrane system;MOPVBAF O.I. C.G. H.G.
107.7 99.9 24.0 At1g32740 840168 protein binding / zinc ion binding F:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MPOFVB O.I. C.G. H.G.
103.5 99.9 362.8 At1g75830 843916 LCR67 Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2. O.I. C.G. H.G.
94.2 99.9 65.4 At5g60220 836144 TET4 (TETRASPANIN4) Member of TETRASPANIN family O.I. C.G. H.G.
93.2 99.9 226.9 At3g53230 824489 cell division cycle protein 48, putative / CDC48, putative F:hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding;P:response to cadmium ion;C:cytosol, nucleolus, plasma membrane;BOMFPAV O.I. C.G. H.G.
81.8 99.9 71.3 At3g48580 824018 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative F:hydrolase activity, acting on glycosyl bonds, hydrolase activity, hydrolyzing O-glycosyl compounds, xyloglucan:xyloglucosyl transferase activity;P:carbohydrate metabolic process, cellular glucan metabolic process;C:endomembrane system, apoplast, cell wall;PBFOA O.I. C.G. H.G.
81.7 99.9 161.8 At3g19920 821530 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PB O.I. C.G. H.G.
73.5 99.9 214.5 At2g39420 818527 esterase/lipase/thioesterase family protein F:catalytic activity;P:unknown;C:unknown;BOPMFVA O.I. C.G. H.G.
73.0 99.9 78.1 At1g60090 842304 BGLU4 (BETA GLUCOSIDASE 4) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;BOPMFA O.I. C.G. H.G.
69.7 99.9 304.5 At1g32560 840150 late embryogenesis abundant group 1 domain-containing protein / LEA group 1 domain-containing protein F:molecular_function unknown;P:embryonic development ending in seed dormancy, embryonic development;C:cellular_component unknown;PMO O.I. C.G. H.G.
68.2 99.9 110.4 At5g10300 830894 MES5 (METHYL ESTERASE 5) Encodes a protein predicted to act as a carboxylesterase. It has similarity to the SABP2 methyl salicylate esterase from tobacco. This protein does not act on methyl IAA, methyl JA, MeSA, MeGA4, or MEGA9 in vitro. O.I. C.G. H.G.
67.4 99.8 37.1 At5g40010 833998 AATP1 (AAA-ATPase 1) F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:unknown;OMBFPAV O.I. C.G. H.G.
61.5 99.8 426.5 At5g47550 834805 cysteine protease inhibitor, putative / cystatin, putative F:cysteine-type endopeptidase inhibitor activity;P:biological_process unknown;C:cell wall;PMOB O.I. C.G. H.G.
61.2 99.8 526.0 At1g52690 841701 late embryogenesis abundant protein, putative / LEA protein, putative F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:cellular_component unknown;PBMOFVA O.I. C.G. H.G.
61.1 99.8 81.9 At3g22880 821860 DMC1 (DISRUPTION OF MEIOTIC CONTROL 1) Expression of the AtDMC1 is restricted to pollen mother cells in anthers and to megaspore mother cells in ovules. Similar to meiosis-specific yeast DMC gene. O.I. C.G. H.G.
59.6 99.8 399.2 At5g42890 834300 SCP2 (STEROL CARRIER PROTEIN 2) F:sterol carrier activity, oxidoreductase activity;P:glyoxylate metabolic process, intracellular lipid transport, fatty acid beta-oxidation, seed germination;C:peroxisome;MFOPB O.I. C.G. H.G.
55.4 99.8 32.5 At4g39500 830104 CYP96A11 member of CYP96A O.I. C.G. H.G.
54.5 99.8 70.7 At1g79520 844290 cation efflux family protein F:cation transmembrane transporter activity;P:cation transport;C:plasma membrane, membrane;BFOPAM O.I. C.G. H.G.
53.9 99.8 95.5 At4g23050 828404 protein kinase, putative F:protein serine/threonine/tyrosine kinase activity, protein kinase activity, signal transducer activity;P:signal transduction, protein amino acid phosphorylation, regulation of transcription, DNA-dependent;C:unknown;MPOFBVA O.I. C.G. H.G.
51.9 99.8 55.8 At3g42850 823331 galactokinase, putative F:kinase activity, phosphotransferase activity, alcohol group as acceptor, galactokinase activity, ATP binding;P:metabolic process, phosphorylation;C:cytoplasm;BOMFPA O.I. C.G. H.G.
51.4 99.8 398.1 At5g03860 831690 MLS (MALATE SYNTHASE) Encodes a protein with malate synthase activity. O.I. C.G. H.G.
50.3 99.8 267.4 At3g45310 823669 cysteine proteinase, putative F:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis;C:endomembrane system;MOPBVAF O.I. C.G. H.G.
49.3 99.8 490.0 At5g11520 831024 ASP3 (ASPARTATE AMINOTRANSFERASE 3) Encodes the chloroplastic isozyme of aspartate aminotransferase. Involved in aspartate biosynthesis and nitrogen metabolism. mRNA is expressed in senescing leaves. O.I. C.G. H.G.
48.1 99.8 129.8 At2g39980 818586 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFB O.I. C.G. H.G.
47.2 99.8 37.8 At4g24660 828568 ATHB22 (HOMEOBOX PROTEIN 22) F:transcription factor activity, DNA binding;P:embryonic development ending in seed dormancy;C:nucleus;PM O.I. C.G. H.G.
46.7 99.8 154.1 At5g07330 830624 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P O.I. C.G. H.G.
46.6 99.8 15.2 At5g65100 836634 ethylene insensitive 3 family protein F:transcription factor activity;P:regulation of transcription;C:nucleus;PM O.I. C.G. H.G.
46.5 99.8 103.6 At2g24040 816938 hydrophobic protein, putative / low temperature and salt responsive protein, putative F:unknown;P:hyperosmotic salinity response, response to cold;C:endomembrane system, integral to membrane;PFBMO O.I. C.G. H.G.
46.0 99.8 65.3 At4g24150 828515 AtGRF8 (GROWTH-REGULATING FACTOR 8) Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Involved in leaf development and expressed in shoot and flower. O.I. C.G. H.G.
44.9 99.8 45.2 At5g39100 833903 GLP6 (GERMIN-LIKE PROTEIN 6) germin-like protein (GLP6) O.I. C.G. H.G.
44.5 99.8 188.2 At5g66140 836746 PAD2 (PROTEASOME ALPHA SUBUNIT D 2) Encodes alpha5 subunit of 20S proteosome complex involved in protein degradation. O.I. C.G. H.G.
44.1 99.8 44.9 At5g26731 832715 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
42.3 99.8 86.3 At1g64110 842716 AAA-type ATPase family protein F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:endomembrane system;BOMFPAV O.I. C.G. H.G.
42.1 99.8 490.6 At3g12580 820438 HSP70 (heat shock protein 70) F:ATP binding;P:in 8 processes;C:cytosol, mitochondrion, cell wall, plasma membrane;OBMFPVA O.I. C.G. H.G.
41.9 99.8 186.1 At5g51940 835269 NRPB6A One of two highly similar proteins that can serve as a non-catalytic subunit of nuclear DNA-dependent RNA polymerases II, IV and V; homologous to budding yeast RPB6 and the E. coli RNA polymerase omega subunit. Probably redundant with At2g04630. O.I. C.G. H.G.
40.3 99.8 85.7 At1g09100 837431 RPT5B (26S proteasome AAA-ATPase subunit RPT5B) Encodes RPT5b (Regulatory Particle 5b), one of the six AAA-ATPases of the proteasome regulatory particle. Essential for gametophyte development. In Arabidopsis, the RPT5 subunit is encoded by two highly homologous genes, RPT5a and RPT5b. RPT5a and RPT5b show accession-dependent functional redundancy. In Wassilewskija (Ws) accession: mutant alleles of RPT5a displayed 50% pollen lethality, indicating that RPT5a is essential for male gametophyte development. In the Columbia (Col) accession, a rpt5a mutant allele did not display such a phenotype because the RPT5b Col allele complements the rpt5a defect in the male gametophyte, whereas the RPT5b Ws allele does not. Double rpt5a rpt5b mutants in Col background showed a complete male and female gametophyte lethal phenotype. O.I. C.G. H.G.
40.2 99.8 93.3 At4g22290 828324 ubiquitin thiolesterase F:ubiquitin thiolesterase activity;P:ubiquitin-dependent protein catabolic process;C:unknown;PMBO O.I. C.G. H.G.
40.0 99.8 409.8 At2g31980 817757 cysteine proteinase inhibitor-related F:cysteine-type endopeptidase inhibitor activity;P:biological_process unknown;C:endomembrane system;PMO O.I. C.G. H.G.
39.9 99.8 144.8 At2g21820 816718 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
38.8 99.8 74.0 At3g62860 825461 esterase/lipase/thioesterase family protein F:catalytic activity;P:unknown;C:plasma membrane;BOPMFVA O.I. C.G. H.G.
37.6 99.7 71.8 At5g44310 834454 late embryogenesis abundant domain-containing protein / LEA domain-containing protein F:unknown;P:embryonic development ending in seed dormancy;C:unknown;OMBFPAV O.I. C.G. H.G.
37.6 99.7 51.9 At1g70840 843421 MLP31 (MLP-LIKE PROTEIN 31) F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P O.I. C.G. H.G.
37.5 99.7 44.7 At5g14180 831268 MPL1 (MYZUS PERSICAE-INDUCED LIPASE 1) F:catalytic activity;P:glycerol biosynthetic process, lipid metabolic process;C:endomembrane system;MFPBO O.I. C.G. H.G.
36.5 99.7 308.4 At1g04560 839491 AWPM-19-like membrane family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
36.0 99.7 254.3 At1g28660 839766 lipase, putative F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM O.I. C.G. H.G.
34.9 99.7 106.9 At2g24280 816963 serine carboxypeptidase S28 family protein F:serine-type peptidase activity, serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system, lysosome;MOFPB O.I. C.G. H.G.
34.7 99.7 14.4 At5g05420 830425 immunophilin, putative / FKBP-type peptidyl-prolyl cis-trans isomerase, putative F:FK506 binding, peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:chloroplast thylakoid lumen;BMOPFA O.I. C.G. H.G.
34.1 99.7 66.7 At2g23620 816894 MES1 (METHYL ESTERASE 1) Encodes a protein shown to have carboxylesterase activity, methyl salicylate esterase activity, methyl jasmonate esterase activity, and methyl IAA esterase activity in vitro. MES1 appears to be involved in MeSA hydrolysis in planta. Expression of MES1 can restore systemic acquired resistance in SAR-deficient tobacco plants. This protein does not act on MeGA4, or MEGA9 in vitro. O.I. C.G. H.G.
33.3 99.7 210.9 At5g65110 836635 ACX2 (ACYL-COA OXIDASE 2) Encodes an acyl-CoA oxidase presumably involved in long chain fatty acid biosynthesis. O.I. C.G. H.G.
33.0 99.7 149.0 At1g13080 837865 CYP71B2 (CYTOCHROME P450 71B2) cytochrome P450 monooxygenase O.I. C.G. H.G.
31.6 99.7 66.5 At2g18560 816371 UDP-glucoronosyl/UDP-glucosyl transferase family protein F:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBOVF O.I. C.G. H.G.
31.2 99.7 83.0 At5g55200 835613 co-chaperone grpE protein, putative F:ATP binding;P:protein folding;C:mitochondrion;BOMFPA O.I. C.G. H.G.
30.9 99.7 104.8 At5g25900 832659 GA3 (GA REQUIRING 3) Encodes a member of the CYP701A cytochrome p450 family that is involved in later steps of the gibberellin biosynthetic pathway. O.I. C.G. H.G.
30.8 99.7 212.2 At1g14950 838060 major latex protein-related / MLP-related F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P O.I. C.G. H.G.
30.5 99.7 248.2 At4g34131 829559 UGT73B3 (UDP-glucosyl transferase 73B3) F:quercetin 3-O-glucosyltransferase activity, transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity, abscisic acid glucosyltransferase activity;P:response to cyclopentenone, response to other organism;C:endomembrane system;PMBVOF O.I. C.G. H.G.
30.5 99.7 91.1 At2g21640 816702 - Encodes a protein of unknown function that is a marker for oxidative stress response. O.I. C.G. H.G.
29.8 99.7 190.7 At1g09570 837483 PHYA (PHYTOCHROME A) Light-labile cytoplasmic red/far-red light photoreceptor involved in the regulation of photomorphogenesis. It exists in two inter-convertible forms: Pr and Pfr (active) and functions as a dimer.The N terminus carries a single tetrapyrrole chromophore, and the C terminus is involved in dimerization. It is the sole photoreceptor mediating the FR high irradiance response (HIR). Major regulator in red-light induction of phototropic enhancement. Involved in the regulation of de-etiolation. Involved in gravitropism and phototropism. Requires FHY1 for nuclear accumulation. O.I. C.G. H.G.
29.5 99.7 179.4 At5g51040 835177 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOFPM O.I. C.G. H.G.
29.2 99.7 577.4 At2g05710 815120 aconitate hydratase, cytoplasmic, putative / citrate hydro-lyase/aconitase, putative Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds. O.I. C.G. H.G.
29.1 99.7 146.7 At2g02850 814816 ARPN (PLANTACYANIN) Encodes plantacyanin one of blue copper proteins. Involved in anther development and pollination. Expressed in the transmitting tract of the pistil. O.I. C.G. H.G.
28.8 99.7 73.0 At5g14105 831260 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
28.3 99.7 488.9 At3g21720 821726 ICL (ISOCITRATE LYASE) Encodes a glyoxylate cycle enzyme isocitrate lyase (ICL). O.I. C.G. H.G.
28.1 99.7 101.9 At2g41260 818725 M17 Late-embryogenesis-abundant gene. Involved in the acquisition of desiccation tolerance during late phase of embryogenesis. O.I. C.G. H.G.
28.1 99.7 33.5 At3g56630 824830 CYP94D2 member of CYP94D O.I. C.G. H.G.
28.0 99.7 31.7 At3g20120 821555 CYP705A21 member of CYP705A O.I. C.G. H.G.
27.8 99.7 25.8 At2g34960 818060 CAT5 (CATIONIC AMINO ACID TRANSPORTER 5) Encodes a member of the cationic amino acid transporter (CAT) subfamily of amino acid polyamine choline transporters. Mediates efficient uptake of Lys, Arg and Glu in a yeast system. Localized to the plasma membrane. O.I. C.G. H.G.
27.7 99.7 206.8 At2g29420 817491 ATGSTU7 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 7) Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). Induced by Salicylic acid. Independent of NPR1 for their induction by salicylic acid. O.I. C.G. H.G.
27.0 99.7 116.7 At5g62200 836341 embryo-specific protein-related F:molecular_function unknown;P:biological_process unknown;C:plasma membrane, anchored to membrane;P O.I. C.G. H.G.
26.4 99.7 204.4 At1g80460 844385 NHO1 (nonhost resistance to P. s. phaseolicola 1) Encodes a protein similar to glycerol kinase, which converts glycerol to glycerol 3-phosphate and performs a rate-limiting step in glycerol metabolism. This gene is required for both general and specific resistance against bacteria and fungi. Arabidopsis thaliana glycerol kinase (GLR1) mRNA.Involved in flagellin-induced non-host resistance to Pseudomonas. Coronatine partially suppresses flagellin-induced expression of NHO1. O.I. C.G. H.G.
26.3 99.7 41.9 At3g15180 820749 proteasome-related F:binding;P:biological_process unknown;C:plasma membrane;MPOB O.I. C.G. H.G.
26.2 99.7 35.0 At5g51760 835250 AHG1 (ABA-hypersensitive germination 1) Encodes AHG1 (ABA-hypersensitive germination 1), a putative protein phosphatase 2C (PP2C). Expressed in seeds. AHG1 functions in seed development and germination. O.I. C.G. H.G.
26.1 99.7 175.6 At4g12910 826903 scpl20 (serine carboxypeptidase-like 20) F:serine-type carboxypeptidase activity;P:proteolysis;C:vacuole;PMFOB O.I. C.G. H.G.
25.9 99.7 94.8 At3g28210 822447 PMZ Encodes a putative zinc finger protein (PMZ). O.I. C.G. H.G.
25.8 99.7 62.0 At5g20910 832215 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:nucleus;PMOFV O.I. C.G. H.G.
25.8 99.7 48.9 At4g31330 829260 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BPO O.I. C.G. H.G.
24.9 99.6 162.4 At3g54940 824659 - - O.I. C.G. H.G.
23.8 99.6 180.5 At5g66170 836749 - F:molecular_function unknown;P:aging;C:cellular_component unknown;PBOA O.I. C.G. H.G.
23.8 99.6 54.0 At4g21490 828234 NDB3 F:NADH dehydrogenase activity;P:unknown;C:unknown;BOFPAM O.I. C.G. H.G.
23.7 99.6 27.6 At3g25260 822120 proton-dependent oligopeptide transport (POT) family protein F:transporter activity;P:oligopeptide transport;C:membrane;BPMOF O.I. C.G. H.G.
23.5 99.6 22.1 At3g09480 820105 histone H2B, putative F:DNA binding;P:nucleosome assembly;C:nucleus, nucleosome;MPOF O.I. C.G. H.G.
23.4 99.6 494.8 At4g37870 829943 PCK1 (PHOSPHOENOLPYRUVATE CARBOXYKINASE 1) Encodes a putative phosphoenolpyruvate carboxykinase (ATP-dependent). O.I. C.G. H.G.
23.3 99.6 128.9 At1g62710 842569 BETA-VPE (BETA VACUOLAR PROCESSING ENZYME) Encodes a vacuolar processing enzyme belonging to a novel group of cysteine proteases that is expressed specifically in seeds and is essential for the proper processing of storage proteins. O.I. C.G. H.G.
22.9 99.6 138.8 At1g02850 839435 BGLU11 (BETA GLUCOSIDASE 11) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;BOPMFA O.I. C.G. H.G.
22.9 99.6 45.9 At3g14610 820689 CYP72A7 putative cytochrome P450 O.I. C.G. H.G.
22.6 99.6 185.9 At2g42790 818879 CSY3 (citrate synthase 3) Encodes a peroxisomal citrate synthase that is expressed throughout seedling and shoot development. O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
703.4	100.0	289.0	At5g10120	830876	ethylene insensitive 3 family protein	F:transcription factor activity;P:regulation of transcription;C:nucleus;POM	O.I.	C.G.	H.G.
344.3	100.0	720.6	At5g05290	830411	ATEXPA2 (ARABIDOPSIS THALIANA EXPANSIN A2)	Encodes an expansin. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)	O.I.	C.G.	H.G.
288.0	100.0	624.0	At1g73120	843643	unknown protein	F:molecular_function unknown;P:response to oxidative stress;C:unknown;P	O.I.	C.G.	H.G.
286.1	100.0	58.4	At2g27300	817273	NTL8 (NTM1-LIKE 8)	F:transcription factor activity;P:multicellular organismal development, response to salt stress, seed germination;C:plasma membrane;P	O.I.	C.G.	H.G.
259.3	100.0	420.6	At1g73220	843656	AtOCT1 (Arabidopsis thaliana ORGANIC CATION/CARNITINE TRANSPORTER1)	F:carnitine transporter activity, transporter activity, carbohydrate transmembrane transporter activity;P:unknown;C:plasma membrane, membrane;BMFPOA	O.I.	C.G.	H.G.
218.6	100.0	389.8	At1g17490	838322	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
145.5	99.9	105.3	At5g54300	835518	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPOFBA	O.I.	C.G.	H.G.
130.5	99.9	485.6	At2g27380	817282	ATEPR1	Encodes an extensin like gene involved in seed germination.	O.I.	C.G.	H.G.
129.9	99.9	193.4	At3g53040	824470	late embryogenesis abundant protein, putative / LEA protein, putative	F:unknown;P:embryonic development ending in seed dormancy;C:unknown;MBOFPAV	O.I.	C.G.	H.G.
129.7	99.9	388.2	At2g35300	818097	late embryogenesis abundant group 1 domain-containing protein / LEA group 1 domain-containing protein	F:molecular_function unknown;P:embryonic development ending in seed dormancy, pollen tube development;C:cellular_component unknown;P	O.I.	C.G.	H.G.
128.4	99.9	175.7	At4g18910	827626	NIP1	Encodes an aquaporin homolog. Functions in arsenite transport and tolerance.	O.I.	C.G.	H.G.
125.7	99.9	211.6	At2g36640	818236	ATECP63 (EMBRYONIC CELL PROTEIN 63)	Encodes putative phosphotyrosine protein belonging to late embryogenesis abundant (LEA) protein in group 3 that might be involved in maturation and desiccation tolerance of seeds. RFLP and CAPS mapping place it on chromosome 4 but the nucleotide sequence maps it to chromosome 2.	O.I.	C.G.	H.G.
117.9	99.9	92.5	At2g46950	819309	CYP709B2	member of CYP709B	O.I.	C.G.	H.G.
116.6	99.9	219.4	At1g17020	838272	SRG1 (SENESCENCE-RELATED GENE 1)	Encodes a novel member of the Fe(II)/ascorbate oxidase gene family; senescence-related gene.	O.I.	C.G.	H.G.
112.7	99.9	73.7	At2g42430	818843	LBD16 (LATERAL ORGAN BOUNDARIES-DOMAIN 16)	LOB-domain protein gene LBD16. This gene contains one auxin-responsive element (AuxRE).	O.I.	C.G.	H.G.
110.9	99.9	486.5	At4g36880	829841	CP1 (CYSTEINE PROTEINASE1)	F:cysteine-type peptidase activity, cysteine-type endopeptidase activity;P:proteolysis, response to gibberellin stimulus, response to red light;C:endomembrane system;MOPVBAF	O.I.	C.G.	H.G.
107.7	99.9	24.0	At1g32740	840168	protein binding / zinc ion binding	F:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MPOFVB	O.I.	C.G.	H.G.
103.5	99.9	362.8	At1g75830	843916	LCR67	Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.	O.I.	C.G.	H.G.
94.2	99.9	65.4	At5g60220	836144	TET4 (TETRASPANIN4)	Member of TETRASPANIN family	O.I.	C.G.	H.G.
93.2	99.9	226.9	At3g53230	824489	cell division cycle protein 48, putative / CDC48, putative	F:hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding;P:response to cadmium ion;C:cytosol, nucleolus, plasma membrane;BOMFPAV	O.I.	C.G.	H.G.
81.8	99.9	71.3	At3g48580	824018	xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative	F:hydrolase activity, acting on glycosyl bonds, hydrolase activity, hydrolyzing O-glycosyl compounds, xyloglucan:xyloglucosyl transferase activity;P:carbohydrate metabolic process, cellular glucan metabolic process;C:endomembrane system, apoplast, cell wall;PBFOA	O.I.	C.G.	H.G.
81.7	99.9	161.8	At3g19920	821530	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PB	O.I.	C.G.	H.G.
73.5	99.9	214.5	At2g39420	818527	esterase/lipase/thioesterase family protein	F:catalytic activity;P:unknown;C:unknown;BOPMFVA	O.I.	C.G.	H.G.
73.0	99.9	78.1	At1g60090	842304	BGLU4 (BETA GLUCOSIDASE 4)	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;BOPMFA	O.I.	C.G.	H.G.
69.7	99.9	304.5	At1g32560	840150	late embryogenesis abundant group 1 domain-containing protein / LEA group 1 domain-containing protein	F:molecular_function unknown;P:embryonic development ending in seed dormancy, embryonic development;C:cellular_component unknown;PMO	O.I.	C.G.	H.G.
68.2	99.9	110.4	At5g10300	830894	MES5 (METHYL ESTERASE 5)	Encodes a protein predicted to act as a carboxylesterase. It has similarity to the SABP2 methyl salicylate esterase from tobacco. This protein does not act on methyl IAA, methyl JA, MeSA, MeGA4, or MEGA9 in vitro.	O.I.	C.G.	H.G.
67.4	99.8	37.1	At5g40010	833998	AATP1 (AAA-ATPase 1)	F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:unknown;OMBFPAV	O.I.	C.G.	H.G.
61.5	99.8	426.5	At5g47550	834805	cysteine protease inhibitor, putative / cystatin, putative	F:cysteine-type endopeptidase inhibitor activity;P:biological_process unknown;C:cell wall;PMOB	O.I.	C.G.	H.G.
61.2	99.8	526.0	At1g52690	841701	late embryogenesis abundant protein, putative / LEA protein, putative	F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:cellular_component unknown;PBMOFVA	O.I.	C.G.	H.G.
61.1	99.8	81.9	At3g22880	821860	DMC1 (DISRUPTION OF MEIOTIC CONTROL 1)	Expression of the AtDMC1 is restricted to pollen mother cells in anthers and to megaspore mother cells in ovules. Similar to meiosis-specific yeast DMC gene.	O.I.	C.G.	H.G.
59.6	99.8	399.2	At5g42890	834300	SCP2 (STEROL CARRIER PROTEIN 2)	F:sterol carrier activity, oxidoreductase activity;P:glyoxylate metabolic process, intracellular lipid transport, fatty acid beta-oxidation, seed germination;C:peroxisome;MFOPB	O.I.	C.G.	H.G.
55.4	99.8	32.5	At4g39500	830104	CYP96A11	member of CYP96A	O.I.	C.G.	H.G.
54.5	99.8	70.7	At1g79520	844290	cation efflux family protein	F:cation transmembrane transporter activity;P:cation transport;C:plasma membrane, membrane;BFOPAM	O.I.	C.G.	H.G.
53.9	99.8	95.5	At4g23050	828404	protein kinase, putative	F:protein serine/threonine/tyrosine kinase activity, protein kinase activity, signal transducer activity;P:signal transduction, protein amino acid phosphorylation, regulation of transcription, DNA-dependent;C:unknown;MPOFBVA	O.I.	C.G.	H.G.
51.9	99.8	55.8	At3g42850	823331	galactokinase, putative	F:kinase activity, phosphotransferase activity, alcohol group as acceptor, galactokinase activity, ATP binding;P:metabolic process, phosphorylation;C:cytoplasm;BOMFPA	O.I.	C.G.	H.G.
51.4	99.8	398.1	At5g03860	831690	MLS (MALATE SYNTHASE)	Encodes a protein with malate synthase activity.	O.I.	C.G.	H.G.
50.3	99.8	267.4	At3g45310	823669	cysteine proteinase, putative	F:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis;C:endomembrane system;MOPBVAF	O.I.	C.G.	H.G.
49.3	99.8	490.0	At5g11520	831024	ASP3 (ASPARTATE AMINOTRANSFERASE 3)	Encodes the chloroplastic isozyme of aspartate aminotransferase. Involved in aspartate biosynthesis and nitrogen metabolism. mRNA is expressed in senescing leaves.	O.I.	C.G.	H.G.
48.1	99.8	129.8	At2g39980	818586	transferase family protein	F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFB	O.I.	C.G.	H.G.
47.2	99.8	37.8	At4g24660	828568	ATHB22 (HOMEOBOX PROTEIN 22)	F:transcription factor activity, DNA binding;P:embryonic development ending in seed dormancy;C:nucleus;PM	O.I.	C.G.	H.G.
46.7	99.8	154.1	At5g07330	830624	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P	O.I.	C.G.	H.G.
46.6	99.8	15.2	At5g65100	836634	ethylene insensitive 3 family protein	F:transcription factor activity;P:regulation of transcription;C:nucleus;PM	O.I.	C.G.	H.G.
46.5	99.8	103.6	At2g24040	816938	hydrophobic protein, putative / low temperature and salt responsive protein, putative	F:unknown;P:hyperosmotic salinity response, response to cold;C:endomembrane system, integral to membrane;PFBMO	O.I.	C.G.	H.G.
46.0	99.8	65.3	At4g24150	828515	AtGRF8 (GROWTH-REGULATING FACTOR 8)	Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Involved in leaf development and expressed in shoot and flower.	O.I.	C.G.	H.G.
44.9	99.8	45.2	At5g39100	833903	GLP6 (GERMIN-LIKE PROTEIN 6)	germin-like protein (GLP6)	O.I.	C.G.	H.G.
44.5	99.8	188.2	At5g66140	836746	PAD2 (PROTEASOME ALPHA SUBUNIT D 2)	Encodes alpha5 subunit of 20S proteosome complex involved in protein degradation.	O.I.	C.G.	H.G.
44.1	99.8	44.9	At5g26731	832715	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
42.3	99.8	86.3	At1g64110	842716	AAA-type ATPase family protein	F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:endomembrane system;BOMFPAV	O.I.	C.G.	H.G.
42.1	99.8	490.6	At3g12580	820438	HSP70 (heat shock protein 70)	F:ATP binding;P:in 8 processes;C:cytosol, mitochondrion, cell wall, plasma membrane;OBMFPVA	O.I.	C.G.	H.G.
41.9	99.8	186.1	At5g51940	835269	NRPB6A	One of two highly similar proteins that can serve as a non-catalytic subunit of nuclear DNA-dependent RNA polymerases II, IV and V; homologous to budding yeast RPB6 and the E. coli RNA polymerase omega subunit. Probably redundant with At2g04630.	O.I.	C.G.	H.G.
40.3	99.8	85.7	At1g09100	837431	RPT5B (26S proteasome AAA-ATPase subunit RPT5B)	Encodes RPT5b (Regulatory Particle 5b), one of the six AAA-ATPases of the proteasome regulatory particle. Essential for gametophyte development. In Arabidopsis, the RPT5 subunit is encoded by two highly homologous genes, RPT5a and RPT5b. RPT5a and RPT5b show accession-dependent functional redundancy. In Wassilewskija (Ws) accession: mutant alleles of RPT5a displayed 50% pollen lethality, indicating that RPT5a is essential for male gametophyte development. In the Columbia (Col) accession, a rpt5a mutant allele did not display such a phenotype because the RPT5b Col allele complements the rpt5a defect in the male gametophyte, whereas the RPT5b Ws allele does not. Double rpt5a rpt5b mutants in Col background showed a complete male and female gametophyte lethal phenotype.	O.I.	C.G.	H.G.
40.2	99.8	93.3	At4g22290	828324	ubiquitin thiolesterase	F:ubiquitin thiolesterase activity;P:ubiquitin-dependent protein catabolic process;C:unknown;PMBO	O.I.	C.G.	H.G.
40.0	99.8	409.8	At2g31980	817757	cysteine proteinase inhibitor-related	F:cysteine-type endopeptidase inhibitor activity;P:biological_process unknown;C:endomembrane system;PMO	O.I.	C.G.	H.G.
39.9	99.8	144.8	At2g21820	816718	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
38.8	99.8	74.0	At3g62860	825461	esterase/lipase/thioesterase family protein	F:catalytic activity;P:unknown;C:plasma membrane;BOPMFVA	O.I.	C.G.	H.G.
37.6	99.7	71.8	At5g44310	834454	late embryogenesis abundant domain-containing protein / LEA domain-containing protein	F:unknown;P:embryonic development ending in seed dormancy;C:unknown;OMBFPAV	O.I.	C.G.	H.G.
37.6	99.7	51.9	At1g70840	843421	MLP31 (MLP-LIKE PROTEIN 31)	F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P	O.I.	C.G.	H.G.
37.5	99.7	44.7	At5g14180	831268	MPL1 (MYZUS PERSICAE-INDUCED LIPASE 1)	F:catalytic activity;P:glycerol biosynthetic process, lipid metabolic process;C:endomembrane system;MFPBO	O.I.	C.G.	H.G.
36.5	99.7	308.4	At1g04560	839491	AWPM-19-like membrane family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
36.0	99.7	254.3	At1g28660	839766	lipase, putative	F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM	O.I.	C.G.	H.G.
34.9	99.7	106.9	At2g24280	816963	serine carboxypeptidase S28 family protein	F:serine-type peptidase activity, serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system, lysosome;MOFPB	O.I.	C.G.	H.G.
34.7	99.7	14.4	At5g05420	830425	immunophilin, putative / FKBP-type peptidyl-prolyl cis-trans isomerase, putative	F:FK506 binding, peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:chloroplast thylakoid lumen;BMOPFA	O.I.	C.G.	H.G.
34.1	99.7	66.7	At2g23620	816894	MES1 (METHYL ESTERASE 1)	Encodes a protein shown to have carboxylesterase activity, methyl salicylate esterase activity, methyl jasmonate esterase activity, and methyl IAA esterase activity in vitro. MES1 appears to be involved in MeSA hydrolysis in planta. Expression of MES1 can restore systemic acquired resistance in SAR-deficient tobacco plants. This protein does not act on MeGA4, or MEGA9 in vitro.	O.I.	C.G.	H.G.
33.3	99.7	210.9	At5g65110	836635	ACX2 (ACYL-COA OXIDASE 2)	Encodes an acyl-CoA oxidase presumably involved in long chain fatty acid biosynthesis.	O.I.	C.G.	H.G.
33.0	99.7	149.0	At1g13080	837865	CYP71B2 (CYTOCHROME P450 71B2)	cytochrome P450 monooxygenase	O.I.	C.G.	H.G.
31.6	99.7	66.5	At2g18560	816371	UDP-glucoronosyl/UDP-glucosyl transferase family protein	F:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBOVF	O.I.	C.G.	H.G.
31.2	99.7	83.0	At5g55200	835613	co-chaperone grpE protein, putative	F:ATP binding;P:protein folding;C:mitochondrion;BOMFPA	O.I.	C.G.	H.G.
30.9	99.7	104.8	At5g25900	832659	GA3 (GA REQUIRING 3)	Encodes a member of the CYP701A cytochrome p450 family that is involved in later steps of the gibberellin biosynthetic pathway.	O.I.	C.G.	H.G.
30.8	99.7	212.2	At1g14950	838060	major latex protein-related / MLP-related	F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P	O.I.	C.G.	H.G.
30.5	99.7	248.2	At4g34131	829559	UGT73B3 (UDP-glucosyl transferase 73B3)	F:quercetin 3-O-glucosyltransferase activity, transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity, abscisic acid glucosyltransferase activity;P:response to cyclopentenone, response to other organism;C:endomembrane system;PMBVOF	O.I.	C.G.	H.G.
30.5	99.7	91.1	At2g21640	816702	-	Encodes a protein of unknown function that is a marker for oxidative stress response.	O.I.	C.G.	H.G.
29.8	99.7	190.7	At1g09570	837483	PHYA (PHYTOCHROME A)	Light-labile cytoplasmic red/far-red light photoreceptor involved in the regulation of photomorphogenesis. It exists in two inter-convertible forms: Pr and Pfr (active) and functions as a dimer.The N terminus carries a single tetrapyrrole chromophore, and the C terminus is involved in dimerization. It is the sole photoreceptor mediating the FR high irradiance response (HIR). Major regulator in red-light induction of phototropic enhancement. Involved in the regulation of de-etiolation. Involved in gravitropism and phototropism. Requires FHY1 for nuclear accumulation.	O.I.	C.G.	H.G.
29.5	99.7	179.4	At5g51040	835177	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOFPM	O.I.	C.G.	H.G.
29.2	99.7	577.4	At2g05710	815120	aconitate hydratase, cytoplasmic, putative / citrate hydro-lyase/aconitase, putative	Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds.	O.I.	C.G.	H.G.
29.1	99.7	146.7	At2g02850	814816	ARPN (PLANTACYANIN)	Encodes plantacyanin one of blue copper proteins. Involved in anther development and pollination. Expressed in the transmitting tract of the pistil.	O.I.	C.G.	H.G.
28.8	99.7	73.0	At5g14105	831260	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
28.3	99.7	488.9	At3g21720	821726	ICL (ISOCITRATE LYASE)	Encodes a glyoxylate cycle enzyme isocitrate lyase (ICL).	O.I.	C.G.	H.G.
28.1	99.7	101.9	At2g41260	818725	M17	Late-embryogenesis-abundant gene. Involved in the acquisition of desiccation tolerance during late phase of embryogenesis.	O.I.	C.G.	H.G.
28.1	99.7	33.5	At3g56630	824830	CYP94D2	member of CYP94D	O.I.	C.G.	H.G.
28.0	99.7	31.7	At3g20120	821555	CYP705A21	member of CYP705A	O.I.	C.G.	H.G.
27.8	99.7	25.8	At2g34960	818060	CAT5 (CATIONIC AMINO ACID TRANSPORTER 5)	Encodes a member of the cationic amino acid transporter (CAT) subfamily of amino acid polyamine choline transporters. Mediates efficient uptake of Lys, Arg and Glu in a yeast system. Localized to the plasma membrane.	O.I.	C.G.	H.G.
27.7	99.7	206.8	At2g29420	817491	ATGSTU7 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 7)	Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). Induced by Salicylic acid. Independent of NPR1 for their induction by salicylic acid.	O.I.	C.G.	H.G.
27.0	99.7	116.7	At5g62200	836341	embryo-specific protein-related	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane, anchored to membrane;P	O.I.	C.G.	H.G.
26.4	99.7	204.4	At1g80460	844385	NHO1 (nonhost resistance to P. s. phaseolicola 1)	Encodes a protein similar to glycerol kinase, which converts glycerol to glycerol 3-phosphate and performs a rate-limiting step in glycerol metabolism. This gene is required for both general and specific resistance against bacteria and fungi. Arabidopsis thaliana glycerol kinase (GLR1) mRNA.Involved in flagellin-induced non-host resistance to Pseudomonas. Coronatine partially suppresses flagellin-induced expression of NHO1.	O.I.	C.G.	H.G.
26.3	99.7	41.9	At3g15180	820749	proteasome-related	F:binding;P:biological_process unknown;C:plasma membrane;MPOB	O.I.	C.G.	H.G.
26.2	99.7	35.0	At5g51760	835250	AHG1 (ABA-hypersensitive germination 1)	Encodes AHG1 (ABA-hypersensitive germination 1), a putative protein phosphatase 2C (PP2C). Expressed in seeds. AHG1 functions in seed development and germination.	O.I.	C.G.	H.G.
26.1	99.7	175.6	At4g12910	826903	scpl20 (serine carboxypeptidase-like 20)	F:serine-type carboxypeptidase activity;P:proteolysis;C:vacuole;PMFOB	O.I.	C.G.	H.G.
25.9	99.7	94.8	At3g28210	822447	PMZ	Encodes a putative zinc finger protein (PMZ).	O.I.	C.G.	H.G.
25.8	99.7	62.0	At5g20910	832215	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:nucleus;PMOFV	O.I.	C.G.	H.G.
25.8	99.7	48.9	At4g31330	829260	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BPO	O.I.	C.G.	H.G.
24.9	99.6	162.4	At3g54940	824659	-	-	O.I.	C.G.	H.G.
23.8	99.6	180.5	At5g66170	836749	-	F:molecular_function unknown;P:aging;C:cellular_component unknown;PBOA	O.I.	C.G.	H.G.
23.8	99.6	54.0	At4g21490	828234	NDB3	F:NADH dehydrogenase activity;P:unknown;C:unknown;BOFPAM	O.I.	C.G.	H.G.
23.7	99.6	27.6	At3g25260	822120	proton-dependent oligopeptide transport (POT) family protein	F:transporter activity;P:oligopeptide transport;C:membrane;BPMOF	O.I.	C.G.	H.G.
23.5	99.6	22.1	At3g09480	820105	histone H2B, putative	F:DNA binding;P:nucleosome assembly;C:nucleus, nucleosome;MPOF	O.I.	C.G.	H.G.
23.4	99.6	494.8	At4g37870	829943	PCK1 (PHOSPHOENOLPYRUVATE CARBOXYKINASE 1)	Encodes a putative phosphoenolpyruvate carboxykinase (ATP-dependent).	O.I.	C.G.	H.G.
23.3	99.6	128.9	At1g62710	842569	BETA-VPE (BETA VACUOLAR PROCESSING ENZYME)	Encodes a vacuolar processing enzyme belonging to a novel group of cysteine proteases that is expressed specifically in seeds and is essential for the proper processing of storage proteins.	O.I.	C.G.	H.G.
22.9	99.6	138.8	At1g02850	839435	BGLU11 (BETA GLUCOSIDASE 11)	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;BOPMFA	O.I.	C.G.	H.G.
22.9	99.6	45.9	At3g14610	820689	CYP72A7	putative cytochrome P450	O.I.	C.G.	H.G.
22.6	99.6	185.9	At2g42790	818879	CSY3 (citrate synthase 3)	Encodes a peroxisomal citrate synthase that is expressed throughout seedling and shoot development.	O.I.	C.G.	H.G.

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GSM ID	GSM134307
Assay name	Penfield_1-9_endosperm-PAC_Rep3_ATH1
GSE experiment	GSE5751: The early post-germinative embryo and endosperm transcriptomes in Arabidopsis

Microarray experiments to specifically-expressed genes

GSM ID GSM134307 Assay name Penfield_1-9_endosperm-PAC_Rep3_ATH1 GSE experiment GSE5751: The early post-germinative embryo and endosperm transcriptomes in Arabidopsis

GSM ID GSM134307

Assay name Penfield_1-9_endosperm-PAC_Rep3_ATH1

GSE experiment GSE5751: The early post-germinative embryo and endosperm transcriptomes in Arabidopsis