Microarray experiments to specifically-expressed genes

GSM ID GSM134307
Assay name Penfield_1-9_endosperm-PAC_Rep3_ATH1
GSE experiment GSE5751: The early post-germinative embryo and endosperm transcriptomes in Arabidopsis

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
703.4100.0289.0At5g10120830876ethylene insensitive 3 family proteinF:transcription factor activity;P:regulation of transcription;C:nucleus;POMO.I.C.G.H.G.
344.3100.0720.6At5g05290830411ATEXPA2 (ARABIDOPSIS THALIANA EXPANSIN A2)Encodes an expansin. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)O.I.C.G.H.G.
288.0100.0624.0At1g73120843643unknown proteinF:molecular_function unknown;P:response to oxidative stress;C:unknown;PO.I.C.G.H.G.
286.1100.058.4At2g27300817273NTL8 (NTM1-LIKE 8)F:transcription factor activity;P:multicellular organismal development, response to salt stress, seed germination;C:plasma membrane;PO.I.C.G.H.G.
259.3100.0420.6At1g73220843656AtOCT1 (Arabidopsis thaliana ORGANIC CATION/CARNITINE TRANSPORTER1)F:carnitine transporter activity, transporter activity, carbohydrate transmembrane transporter activity;P:unknown;C:plasma membrane, membrane;BMFPOAO.I.C.G.H.G.
218.6100.0389.8At1g17490838322unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
145.599.9105.3At5g54300835518unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPOFBAO.I.C.G.H.G.
130.599.9485.6At2g27380817282ATEPR1Encodes an extensin like gene involved in seed germination.O.I.C.G.H.G.
129.999.9193.4At3g53040824470late embryogenesis abundant protein, putative / LEA protein, putativeF:unknown;P:embryonic development ending in seed dormancy;C:unknown;MBOFPAVO.I.C.G.H.G.
129.799.9388.2At2g35300818097late embryogenesis abundant group 1 domain-containing protein / LEA group 1 domain-containing proteinF:molecular_function unknown;P:embryonic development ending in seed dormancy, pollen tube development;C:cellular_component unknown;PO.I.C.G.H.G.
128.499.9175.7At4g18910827626NIP1Encodes an aquaporin homolog. Functions in arsenite transport and tolerance.O.I.C.G.H.G.
125.799.9211.6At2g36640818236ATECP63 (EMBRYONIC CELL PROTEIN 63)Encodes putative phosphotyrosine protein belonging to late embryogenesis abundant (LEA) protein in group 3 that might be involved in maturation and desiccation tolerance of seeds. RFLP and CAPS mapping place it on chromosome 4 but the nucleotide sequence maps it to chromosome 2.O.I.C.G.H.G.
117.999.992.5At2g46950819309CYP709B2member of CYP709BO.I.C.G.H.G.
116.699.9219.4At1g17020838272SRG1 (SENESCENCE-RELATED GENE 1)Encodes a novel member of the Fe(II)/ascorbate oxidase gene family; senescence-related gene.O.I.C.G.H.G.
112.799.973.7At2g42430818843LBD16 (LATERAL ORGAN BOUNDARIES-DOMAIN 16)LOB-domain protein gene LBD16. This gene contains one auxin-responsive element (AuxRE).O.I.C.G.H.G.
110.999.9486.5At4g36880829841CP1 (CYSTEINE PROTEINASE1)F:cysteine-type peptidase activity, cysteine-type endopeptidase activity;P:proteolysis, response to gibberellin stimulus, response to red light;C:endomembrane system;MOPVBAFO.I.C.G.H.G.
107.799.924.0At1g32740840168protein binding / zinc ion bindingF:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MPOFVBO.I.C.G.H.G.
103.599.9362.8At1g75830843916LCR67Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.O.I.C.G.H.G.
94.299.965.4At5g60220836144TET4 (TETRASPANIN4)Member of TETRASPANIN familyO.I.C.G.H.G.
93.299.9226.9At3g53230824489cell division cycle protein 48, putative / CDC48, putativeF:hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding;P:response to cadmium ion;C:cytosol, nucleolus, plasma membrane;BOMFPAVO.I.C.G.H.G.
81.899.971.3At3g48580824018xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putativeF:hydrolase activity, acting on glycosyl bonds, hydrolase activity, hydrolyzing O-glycosyl compounds, xyloglucan:xyloglucosyl transferase activity;P:carbohydrate metabolic process, cellular glucan metabolic process;C:endomembrane system, apoplast, cell wall;PBFOAO.I.C.G.H.G.
81.799.9161.8At3g19920821530unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO.I.C.G.H.G.
73.599.9214.5At2g39420818527esterase/lipase/thioesterase family proteinF:catalytic activity;P:unknown;C:unknown;BOPMFVAO.I.C.G.H.G.
73.099.978.1At1g60090842304BGLU4 (BETA GLUCOSIDASE 4)F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;BOPMFAO.I.C.G.H.G.
69.799.9304.5At1g32560840150late embryogenesis abundant group 1 domain-containing protein / LEA group 1 domain-containing proteinF:molecular_function unknown;P:embryonic development ending in seed dormancy, embryonic development;C:cellular_component unknown;PMOO.I.C.G.H.G.
68.299.9110.4At5g10300830894MES5 (METHYL ESTERASE 5)Encodes a protein predicted to act as a carboxylesterase. It has similarity to the SABP2 methyl salicylate esterase from tobacco. This protein does not act on methyl IAA, methyl JA, MeSA, MeGA4, or MEGA9 in vitro.O.I.C.G.H.G.
67.499.837.1At5g40010833998AATP1 (AAA-ATPase 1)F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:unknown;OMBFPAVO.I.C.G.H.G.
61.599.8426.5At5g47550834805cysteine protease inhibitor, putative / cystatin, putativeF:cysteine-type endopeptidase inhibitor activity;P:biological_process unknown;C:cell wall;PMOBO.I.C.G.H.G.
61.299.8526.0At1g52690841701late embryogenesis abundant protein, putative / LEA protein, putativeF:molecular_function unknown;P:embryonic development ending in seed dormancy;C:cellular_component unknown;PBMOFVAO.I.C.G.H.G.
61.199.881.9At3g22880821860DMC1 (DISRUPTION OF MEIOTIC CONTROL 1)Expression of the AtDMC1 is restricted to pollen mother cells in anthers and to megaspore mother cells in ovules. Similar to meiosis-specific yeast DMC gene.O.I.C.G.H.G.
59.699.8399.2At5g42890834300SCP2 (STEROL CARRIER PROTEIN 2)F:sterol carrier activity, oxidoreductase activity;P:glyoxylate metabolic process, intracellular lipid transport, fatty acid beta-oxidation, seed germination;C:peroxisome;MFOPBO.I.C.G.H.G.
55.499.832.5At4g39500830104CYP96A11member of CYP96AO.I.C.G.H.G.
54.599.870.7At1g79520844290cation efflux family proteinF:cation transmembrane transporter activity;P:cation transport;C:plasma membrane, membrane;BFOPAMO.I.C.G.H.G.
53.999.895.5At4g23050828404protein kinase, putativeF:protein serine/threonine/tyrosine kinase activity, protein kinase activity, signal transducer activity;P:signal transduction, protein amino acid phosphorylation, regulation of transcription, DNA-dependent;C:unknown;MPOFBVAO.I.C.G.H.G.
51.999.855.8At3g42850823331galactokinase, putativeF:kinase activity, phosphotransferase activity, alcohol group as acceptor, galactokinase activity, ATP binding;P:metabolic process, phosphorylation;C:cytoplasm;BOMFPAO.I.C.G.H.G.
51.499.8398.1At5g03860831690MLS (MALATE SYNTHASE)Encodes a protein with malate synthase activity.O.I.C.G.H.G.
50.399.8267.4At3g45310823669cysteine proteinase, putativeF:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis;C:endomembrane system;MOPBVAFO.I.C.G.H.G.
49.399.8490.0At5g11520831024ASP3 (ASPARTATE AMINOTRANSFERASE 3)Encodes the chloroplastic isozyme of aspartate aminotransferase. Involved in aspartate biosynthesis and nitrogen metabolism. mRNA is expressed in senescing leaves.O.I.C.G.H.G.
48.199.8129.8At2g39980818586transferase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFBO.I.C.G.H.G.
47.299.837.8At4g24660828568ATHB22 (HOMEOBOX PROTEIN 22)F:transcription factor activity, DNA binding;P:embryonic development ending in seed dormancy;C:nucleus;PMO.I.C.G.H.G.
46.799.8154.1At5g07330830624unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PO.I.C.G.H.G.
46.699.815.2At5g65100836634ethylene insensitive 3 family proteinF:transcription factor activity;P:regulation of transcription;C:nucleus;PMO.I.C.G.H.G.
46.599.8103.6At2g24040816938hydrophobic protein, putative / low temperature and salt responsive protein, putativeF:unknown;P:hyperosmotic salinity response, response to cold;C:endomembrane system, integral to membrane;PFBMOO.I.C.G.H.G.
46.099.865.3At4g24150828515AtGRF8 (GROWTH-REGULATING FACTOR 8)Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Involved in leaf development and expressed in shoot and flower.O.I.C.G.H.G.
44.999.845.2At5g39100833903GLP6 (GERMIN-LIKE PROTEIN 6)germin-like protein (GLP6)O.I.C.G.H.G.
44.599.8188.2At5g66140836746PAD2 (PROTEASOME ALPHA SUBUNIT D 2)Encodes alpha5 subunit of 20S proteosome complex involved in protein degradation.O.I.C.G.H.G.
44.199.844.9At5g26731832715unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
42.399.886.3At1g64110842716AAA-type ATPase family proteinF:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:endomembrane system;BOMFPAVO.I.C.G.H.G.
42.199.8490.6At3g12580820438HSP70 (heat shock protein 70)F:ATP binding;P:in 8 processes;C:cytosol, mitochondrion, cell wall, plasma membrane;OBMFPVAO.I.C.G.H.G.
41.999.8186.1At5g51940835269NRPB6AOne of two highly similar proteins that can serve as a non-catalytic subunit of nuclear DNA-dependent RNA polymerases II, IV and V; homologous to budding yeast RPB6 and the E. coli RNA polymerase omega subunit. Probably redundant with At2g04630.O.I.C.G.H.G.
40.399.885.7At1g09100837431RPT5B (26S proteasome AAA-ATPase subunit RPT5B)Encodes RPT5b (Regulatory Particle 5b), one of the six AAA-ATPases of the proteasome regulatory particle. Essential for gametophyte development. In Arabidopsis, the RPT5 subunit is encoded by two highly homologous genes, RPT5a and RPT5b. RPT5a and RPT5b show accession-dependent functional redundancy. In Wassilewskija (Ws) accession: mutant alleles of RPT5a displayed 50% pollen lethality, indicating that RPT5a is essential for male gametophyte development. In the Columbia (Col) accession, a rpt5a mutant allele did not display such a phenotype because the RPT5b Col allele complements the rpt5a defect in the male gametophyte, whereas the RPT5b Ws allele does not. Double rpt5a rpt5b mutants in Col background showed a complete male and female gametophyte lethal phenotype.O.I.C.G.H.G.
40.299.893.3At4g22290828324ubiquitin thiolesteraseF:ubiquitin thiolesterase activity;P:ubiquitin-dependent protein catabolic process;C:unknown;PMBOO.I.C.G.H.G.
40.099.8409.8At2g31980817757cysteine proteinase inhibitor-relatedF:cysteine-type endopeptidase inhibitor activity;P:biological_process unknown;C:endomembrane system;PMOO.I.C.G.H.G.
39.999.8144.8At2g21820816718unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
38.899.874.0At3g62860825461esterase/lipase/thioesterase family proteinF:catalytic activity;P:unknown;C:plasma membrane;BOPMFVAO.I.C.G.H.G.
37.699.771.8At5g44310834454late embryogenesis abundant domain-containing protein / LEA domain-containing proteinF:unknown;P:embryonic development ending in seed dormancy;C:unknown;OMBFPAVO.I.C.G.H.G.
37.699.751.9At1g70840843421MLP31 (MLP-LIKE PROTEIN 31)F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;PO.I.C.G.H.G.
37.599.744.7At5g14180831268MPL1 (MYZUS PERSICAE-INDUCED LIPASE 1)F:catalytic activity;P:glycerol biosynthetic process, lipid metabolic process;C:endomembrane system;MFPBOO.I.C.G.H.G.
36.599.7308.4At1g04560839491AWPM-19-like membrane family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
36.099.7254.3At1g28660839766lipase, putativeF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFMO.I.C.G.H.G.
34.999.7106.9At2g24280816963serine carboxypeptidase S28 family proteinF:serine-type peptidase activity, serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system, lysosome;MOFPBO.I.C.G.H.G.
34.799.714.4At5g05420830425immunophilin, putative / FKBP-type peptidyl-prolyl cis-trans isomerase, putativeF:FK506 binding, peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:chloroplast thylakoid lumen;BMOPFAO.I.C.G.H.G.
34.199.766.7At2g23620816894MES1 (METHYL ESTERASE 1)Encodes a protein shown to have carboxylesterase activity, methyl salicylate esterase activity, methyl jasmonate esterase activity, and methyl IAA esterase activity in vitro. MES1 appears to be involved in MeSA hydrolysis in planta. Expression of MES1 can restore systemic acquired resistance in SAR-deficient tobacco plants. This protein does not act on MeGA4, or MEGA9 in vitro.O.I.C.G.H.G.
33.399.7210.9At5g65110836635ACX2 (ACYL-COA OXIDASE 2)Encodes an acyl-CoA oxidase presumably involved in long chain fatty acid biosynthesis.O.I.C.G.H.G.
33.099.7149.0At1g13080837865CYP71B2 (CYTOCHROME P450 71B2)cytochrome P450 monooxygenaseO.I.C.G.H.G.
31.699.766.5At2g18560816371UDP-glucoronosyl/UDP-glucosyl transferase family proteinF:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBOVFO.I.C.G.H.G.
31.299.783.0At5g55200835613co-chaperone grpE protein, putativeF:ATP binding;P:protein folding;C:mitochondrion;BOMFPAO.I.C.G.H.G.
30.999.7104.8At5g25900832659GA3 (GA REQUIRING 3)Encodes a member of the CYP701A cytochrome p450 family that is involved in later steps of the gibberellin biosynthetic pathway.O.I.C.G.H.G.
30.899.7212.2At1g14950838060major latex protein-related / MLP-relatedF:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;PO.I.C.G.H.G.
30.599.7248.2At4g34131829559UGT73B3 (UDP-glucosyl transferase 73B3)F:quercetin 3-O-glucosyltransferase activity, transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity, abscisic acid glucosyltransferase activity;P:response to cyclopentenone, response to other organism;C:endomembrane system;PMBVOFO.I.C.G.H.G.
30.599.791.1At2g21640816702-Encodes a protein of unknown function that is a marker for oxidative stress response.O.I.C.G.H.G.
29.899.7190.7At1g09570837483PHYA (PHYTOCHROME A)Light-labile cytoplasmic red/far-red light photoreceptor involved in the regulation of photomorphogenesis. It exists in two inter-convertible forms: Pr and Pfr (active) and functions as a dimer.The N terminus carries a single tetrapyrrole chromophore, and the C terminus is involved in dimerization. It is the sole photoreceptor mediating the FR high irradiance response (HIR). Major regulator in red-light induction of phototropic enhancement. Involved in the regulation of de-etiolation. Involved in gravitropism and phototropism. Requires FHY1 for nuclear accumulation.O.I.C.G.H.G.
29.599.7179.4At5g51040835177unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOFPMO.I.C.G.H.G.
29.299.7577.4At2g05710815120aconitate hydratase, cytoplasmic, putative / citrate hydro-lyase/aconitase, putativeProtein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds.O.I.C.G.H.G.
29.199.7146.7At2g02850814816ARPN (PLANTACYANIN)Encodes plantacyanin one of blue copper proteins. Involved in anther development and pollination. Expressed in the transmitting tract of the pistil.O.I.C.G.H.G.
28.899.773.0At5g14105831260unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
28.399.7488.9At3g21720821726ICL (ISOCITRATE LYASE)Encodes a glyoxylate cycle enzyme isocitrate lyase (ICL).O.I.C.G.H.G.
28.199.7101.9At2g41260818725M17Late-embryogenesis-abundant gene. Involved in the acquisition of desiccation tolerance during late phase of embryogenesis.O.I.C.G.H.G.
28.199.733.5At3g56630824830CYP94D2member of CYP94DO.I.C.G.H.G.
28.099.731.7At3g20120821555CYP705A21member of CYP705AO.I.C.G.H.G.
27.899.725.8At2g34960818060CAT5 (CATIONIC AMINO ACID TRANSPORTER 5)Encodes a member of the cationic amino acid transporter (CAT) subfamily of amino acid polyamine choline transporters. Mediates efficient uptake of Lys, Arg and Glu in a yeast system. Localized to the plasma membrane.O.I.C.G.H.G.
27.799.7206.8At2g29420817491ATGSTU7 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 7)Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). Induced by Salicylic acid. Independent of NPR1 for their induction by salicylic acid.O.I.C.G.H.G.
27.099.7116.7At5g62200836341embryo-specific protein-relatedF:molecular_function unknown;P:biological_process unknown;C:plasma membrane, anchored to membrane;PO.I.C.G.H.G.
26.499.7204.4At1g80460844385NHO1 (nonhost resistance to P. s. phaseolicola 1)Encodes a protein similar to glycerol kinase, which converts glycerol to glycerol 3-phosphate and performs a rate-limiting step in glycerol metabolism. This gene is required for both general and specific resistance against bacteria and fungi. Arabidopsis thaliana glycerol kinase (GLR1) mRNA.Involved in flagellin-induced non-host resistance to Pseudomonas. Coronatine partially suppresses flagellin-induced expression of NHO1.O.I.C.G.H.G.
26.399.741.9At3g15180820749proteasome-relatedF:binding;P:biological_process unknown;C:plasma membrane;MPOBO.I.C.G.H.G.
26.299.735.0At5g51760835250AHG1 (ABA-hypersensitive germination 1)Encodes AHG1 (ABA-hypersensitive germination 1), a putative protein phosphatase 2C (PP2C). Expressed in seeds. AHG1 functions in seed development and germination.O.I.C.G.H.G.
26.199.7175.6At4g12910826903scpl20 (serine carboxypeptidase-like 20)F:serine-type carboxypeptidase activity;P:proteolysis;C:vacuole;PMFOBO.I.C.G.H.G.
25.999.794.8At3g28210822447PMZEncodes a putative zinc finger protein (PMZ).O.I.C.G.H.G.
25.899.762.0At5g20910832215zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:nucleus;PMOFVO.I.C.G.H.G.
25.899.748.9At4g31330829260unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BPOO.I.C.G.H.G.
24.999.6162.4At3g54940824659--O.I.C.G.H.G.
23.899.6180.5At5g66170836749-F:molecular_function unknown;P:aging;C:cellular_component unknown;PBOAO.I.C.G.H.G.
23.899.654.0At4g21490828234NDB3F:NADH dehydrogenase activity;P:unknown;C:unknown;BOFPAMO.I.C.G.H.G.
23.799.627.6At3g25260822120proton-dependent oligopeptide transport (POT) family proteinF:transporter activity;P:oligopeptide transport;C:membrane;BPMOFO.I.C.G.H.G.
23.599.622.1At3g09480820105histone H2B, putativeF:DNA binding;P:nucleosome assembly;C:nucleus, nucleosome;MPOFO.I.C.G.H.G.
23.499.6494.8At4g37870829943PCK1 (PHOSPHOENOLPYRUVATE CARBOXYKINASE 1)Encodes a putative phosphoenolpyruvate carboxykinase (ATP-dependent).O.I.C.G.H.G.
23.399.6128.9At1g62710842569BETA-VPE (BETA VACUOLAR PROCESSING ENZYME)Encodes a vacuolar processing enzyme belonging to a novel group of cysteine proteases that is expressed specifically in seeds and is essential for the proper processing of storage proteins.O.I.C.G.H.G.
22.999.6138.8At1g02850839435BGLU11 (BETA GLUCOSIDASE 11)F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;BOPMFAO.I.C.G.H.G.
22.999.645.9At3g14610820689CYP72A7putative cytochrome P450O.I.C.G.H.G.
22.699.6185.9At2g42790818879CSY3 (citrate synthase 3)Encodes a peroxisomal citrate synthase that is expressed throughout seedling and shoot development.O.I.C.G.H.G.



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