CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM134306

Assay name Penfield_1-8_endosperm-PAC_Rep2_ATH1

GSE experiment GSE5751: The early post-germinative embryo and endosperm transcriptomes in Arabidopsis

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
615.7 100.0 270.4 At5g10120 830876 ethylene insensitive 3 family protein F:transcription factor activity;P:regulation of transcription;C:nucleus;POM O.I. C.G. H.G.
303.3 100.0 676.3 At5g05290 830411 ATEXPA2 (ARABIDOPSIS THALIANA EXPANSIN A2) Encodes an expansin. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) O.I. C.G. H.G.
247.5 100.0 410.9 At1g73220 843656 AtOCT1 (Arabidopsis thaliana ORGANIC CATION/CARNITINE TRANSPORTER1) F:carnitine transporter activity, transporter activity, carbohydrate transmembrane transporter activity;P:unknown;C:plasma membrane, membrane;BMFPOA O.I. C.G. H.G.
227.4 100.0 554.4 At1g73120 843643 unknown protein F:molecular_function unknown;P:response to oxidative stress;C:unknown;P O.I. C.G. H.G.
218.9 100.0 99.8 At5g39100 833903 GLP6 (GERMIN-LIKE PROTEIN 6) germin-like protein (GLP6) O.I. C.G. H.G.
198.9 100.0 97.9 At2g42430 818843 LBD16 (LATERAL ORGAN BOUNDARIES-DOMAIN 16) LOB-domain protein gene LBD16. This gene contains one auxin-responsive element (AuxRE). O.I. C.G. H.G.
198.2 100.0 147.6 At3g22880 821860 DMC1 (DISRUPTION OF MEIOTIC CONTROL 1) Expression of the AtDMC1 is restricted to pollen mother cells in anthers and to megaspore mother cells in ovules. Similar to meiosis-specific yeast DMC gene. O.I. C.G. H.G.
149.5 99.9 42.2 At2g27300 817273 NTL8 (NTM1-LIKE 8) F:transcription factor activity;P:multicellular organismal development, response to salt stress, seed germination;C:plasma membrane;P O.I. C.G. H.G.
133.8 99.9 100.9 At5g54300 835518 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPOFBA O.I. C.G. H.G.
123.3 99.9 225.6 At1g17020 838272 SRG1 (SENESCENCE-RELATED GENE 1) Encodes a novel member of the Fe(II)/ascorbate oxidase gene family; senescence-related gene. O.I. C.G. H.G.
112.7 99.9 490.5 At4g36880 829841 CP1 (CYSTEINE PROTEINASE1) F:cysteine-type peptidase activity, cysteine-type endopeptidase activity;P:proteolysis, response to gibberellin stimulus, response to red light;C:endomembrane system;MOPVBAF O.I. C.G. H.G.
107.0 99.9 94.5 At1g60090 842304 BGLU4 (BETA GLUCOSIDASE 4) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;BOPMFA O.I. C.G. H.G.
100.1 99.9 263.7 At1g17490 838322 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
99.4 99.9 110.4 At4g21490 828234 NDB3 F:NADH dehydrogenase activity;P:unknown;C:unknown;BOFPAM O.I. C.G. H.G.
94.6 99.9 93.7 At4g31330 829260 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BPO O.I. C.G. H.G.
93.8 99.9 82.5 At2g46950 819309 CYP709B2 member of CYP709B O.I. C.G. H.G.
90.3 99.9 127.1 At5g10300 830894 MES5 (METHYL ESTERASE 5) Encodes a protein predicted to act as a carboxylesterase. It has similarity to the SABP2 methyl salicylate esterase from tobacco. This protein does not act on methyl IAA, methyl JA, MeSA, MeGA4, or MEGA9 in vitro. O.I. C.G. H.G.
87.9 99.9 21.7 At1g32740 840168 protein binding / zinc ion binding F:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MPOFVB O.I. C.G. H.G.
87.5 99.9 45.8 At2g34960 818060 CAT5 (CATIONIC AMINO ACID TRANSPORTER 5) Encodes a member of the cationic amino acid transporter (CAT) subfamily of amino acid polyamine choline transporters. Mediates efficient uptake of Lys, Arg and Glu in a yeast system. Localized to the plasma membrane. O.I. C.G. H.G.
85.6 99.9 167.3 At2g24280 816963 serine carboxypeptidase S28 family protein F:serine-type peptidase activity, serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system, lysosome;MOFPB O.I. C.G. H.G.
83.2 99.9 313.5 At4g12910 826903 scpl20 (serine carboxypeptidase-like 20) F:serine-type carboxypeptidase activity;P:proteolysis;C:vacuole;PMFOB O.I. C.G. H.G.
80.7 99.9 139.3 At4g18910 827626 NIP1 Encodes an aquaporin homolog. Functions in arsenite transport and tolerance. O.I. C.G. H.G.
74.2 99.9 307.2 At1g75830 843916 LCR67 Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2. O.I. C.G. H.G.
68.7 99.9 207.4 At2g39420 818527 esterase/lipase/thioesterase family protein F:catalytic activity;P:unknown;C:unknown;BOPMFVA O.I. C.G. H.G.
66.7 99.8 347.1 At2g27380 817282 ATEPR1 Encodes an extensin like gene involved in seed germination. O.I. C.G. H.G.
64.5 99.8 302.7 At3g45310 823669 cysteine proteinase, putative F:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis;C:endomembrane system;MOPBVAF O.I. C.G. H.G.
63.0 99.8 282.1 At1g02640 837940 BXL2 (BETA-XYLOSIDASE 2) encodes a protein similar to a beta-xylosidase located in the extracellular matrix. This is a member of glycosyl hydrolase family 3 and has six other closely related members. O.I. C.G. H.G.
62.3 99.8 117.3 At5g55200 835613 co-chaperone grpE protein, putative F:ATP binding;P:protein folding;C:mitochondrion;BOMFPA O.I. C.G. H.G.
62.0 99.8 407.1 At5g42890 834300 SCP2 (STEROL CARRIER PROTEIN 2) F:sterol carrier activity, oxidoreductase activity;P:glyoxylate metabolic process, intracellular lipid transport, fatty acid beta-oxidation, seed germination;C:peroxisome;MFOPB O.I. C.G. H.G.
61.3 99.8 276.0 At2g02040 814735 PTR2 (PEPTIDE TRANSPORTER 2) Encodes a di- and tri-peptide transporter that recognizes a variety of different amino acid combinations. Expression of the transcripts for this gene can be detected in the embryo through in situ hybridization. This protein does not have nitrate transporter activity based on oocyte transport assays. O.I. C.G. H.G.
60.9 99.8 34.1 At4g39500 830104 CYP96A11 member of CYP96A O.I. C.G. H.G.
59.8 99.8 35.9 At3g07130 819899 PAP15 (PURPLE ACID PHOSPHATASE 15) F:protein serine/threonine phosphatase activity, acid phosphatase activity;P:biological_process unknown;C:endomembrane system;BPOMFA O.I. C.G. H.G.
57.9 99.8 73.2 At4g24150 828515 AtGRF8 (GROWTH-REGULATING FACTOR 8) Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Involved in leaf development and expressed in shoot and flower. O.I. C.G. H.G.
57.5 99.8 58.8 At3g42850 823331 galactokinase, putative F:kinase activity, phosphotransferase activity, alcohol group as acceptor, galactokinase activity, ATP binding;P:metabolic process, phosphorylation;C:cytoplasm;BOMFPA O.I. C.G. H.G.
57.0 99.8 177.5 At3g53230 824489 cell division cycle protein 48, putative / CDC48, putative F:hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding;P:response to cadmium ion;C:cytosol, nucleolus, plasma membrane;BOMFPAV O.I. C.G. H.G.
54.5 99.8 99.6 At1g09100 837431 RPT5B (26S proteasome AAA-ATPase subunit RPT5B) Encodes RPT5b (Regulatory Particle 5b), one of the six AAA-ATPases of the proteasome regulatory particle. Essential for gametophyte development. In Arabidopsis, the RPT5 subunit is encoded by two highly homologous genes, RPT5a and RPT5b. RPT5a and RPT5b show accession-dependent functional redundancy. In Wassilewskija (Ws) accession: mutant alleles of RPT5a displayed 50% pollen lethality, indicating that RPT5a is essential for male gametophyte development. In the Columbia (Col) accession, a rpt5a mutant allele did not display such a phenotype because the RPT5b Col allele complements the rpt5a defect in the male gametophyte, whereas the RPT5b Ws allele does not. Double rpt5a rpt5b mutants in Col background showed a complete male and female gametophyte lethal phenotype. O.I. C.G. H.G.
52.9 99.8 32.9 At5g40010 833998 AATP1 (AAA-ATPase 1) F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:unknown;OMBFPAV O.I. C.G. H.G.
52.7 99.8 53.0 At5g14180 831268 MPL1 (MYZUS PERSICAE-INDUCED LIPASE 1) F:catalytic activity;P:glycerol biosynthetic process, lipid metabolic process;C:endomembrane system;MFPBO O.I. C.G. H.G.
52.4 99.8 17.7 At5g05420 830425 immunophilin, putative / FKBP-type peptidyl-prolyl cis-trans isomerase, putative F:FK506 binding, peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:chloroplast thylakoid lumen;BMOPFA O.I. C.G. H.G.
50.1 99.8 258.8 At5g65110 836635 ACX2 (ACYL-COA OXIDASE 2) Encodes an acyl-CoA oxidase presumably involved in long chain fatty acid biosynthesis. O.I. C.G. H.G.
49.7 99.8 240.3 At2g35300 818097 late embryogenesis abundant group 1 domain-containing protein / LEA group 1 domain-containing protein F:molecular_function unknown;P:embryonic development ending in seed dormancy, pollen tube development;C:cellular_component unknown;P O.I. C.G. H.G.
48.9 99.8 181.4 At1g13080 837865 CYP71B2 (CYTOCHROME P450 71B2) cytochrome P450 monooxygenase O.I. C.G. H.G.
48.2 99.8 82.4 At3g62860 825461 esterase/lipase/thioesterase family protein F:catalytic activity;P:unknown;C:plasma membrane;BOPMFVA O.I. C.G. H.G.
48.0 99.8 195.6 At5g66140 836746 PAD2 (PROTEASOME ALPHA SUBUNIT D 2) Encodes alpha5 subunit of 20S proteosome complex involved in protein degradation. O.I. C.G. H.G.
47.4 99.8 78.6 At2g23620 816894 MES1 (METHYL ESTERASE 1) Encodes a protein shown to have carboxylesterase activity, methyl salicylate esterase activity, methyl jasmonate esterase activity, and methyl IAA esterase activity in vitro. MES1 appears to be involved in MeSA hydrolysis in planta. Expression of MES1 can restore systemic acquired resistance in SAR-deficient tobacco plants. This protein does not act on MeGA4, or MEGA9 in vitro. O.I. C.G. H.G.
46.2 99.8 73.9 At3g05290 819693 PNC1 (PEROXISOMAL ADENINE NUCLEOTIDE CARRIER 1) encodes a peroxisomal adenine nucleotide transporter, involved in fatty acid beta-oxidation during early stage of postgerminative growth. O.I. C.G. H.G.
45.5 99.8 366.6 At5g47550 834805 cysteine protease inhibitor, putative / cystatin, putative F:cysteine-type endopeptidase inhibitor activity;P:biological_process unknown;C:cell wall;PMOB O.I. C.G. H.G.
44.4 99.8 264.9 At1g80460 844385 NHO1 (nonhost resistance to P. s. phaseolicola 1) Encodes a protein similar to glycerol kinase, which converts glycerol to glycerol 3-phosphate and performs a rate-limiting step in glycerol metabolism. This gene is required for both general and specific resistance against bacteria and fungi. Arabidopsis thaliana glycerol kinase (GLR1) mRNA.Involved in flagellin-induced non-host resistance to Pseudomonas. Coronatine partially suppresses flagellin-induced expression of NHO1. O.I. C.G. H.G.
43.6 99.8 97.2 At4g22290 828324 ubiquitin thiolesterase F:ubiquitin thiolesterase activity;P:ubiquitin-dependent protein catabolic process;C:unknown;PMBO O.I. C.G. H.G.
43.2 99.8 364.8 At5g03860 831690 MLS (MALATE SYNTHASE) Encodes a protein with malate synthase activity. O.I. C.G. H.G.
43.1 99.8 256.7 At2g42790 818879 CSY3 (citrate synthase 3) Encodes a peroxisomal citrate synthase that is expressed throughout seedling and shoot development. O.I. C.G. H.G.
42.8 99.8 36.0 At4g24660 828568 ATHB22 (HOMEOBOX PROTEIN 22) F:transcription factor activity, DNA binding;P:embryonic development ending in seed dormancy;C:nucleus;PM O.I. C.G. H.G.
42.2 99.8 122.7 At2g36640 818236 ATECP63 (EMBRYONIC CELL PROTEIN 63) Encodes putative phosphotyrosine protein belonging to late embryogenesis abundant (LEA) protein in group 3 that might be involved in maturation and desiccation tolerance of seeds. RFLP and CAPS mapping place it on chromosome 4 but the nucleotide sequence maps it to chromosome 2. O.I. C.G. H.G.
42.1 99.8 62.3 At3g14610 820689 CYP72A7 putative cytochrome P450 O.I. C.G. H.G.
41.2 99.8 61.4 At1g79520 844290 cation efflux family protein F:cation transmembrane transporter activity;P:cation transport;C:plasma membrane, membrane;BFOPAM O.I. C.G. H.G.
41.0 99.8 83.3 At4g23050 828404 protein kinase, putative F:protein serine/threonine/tyrosine kinase activity, protein kinase activity, signal transducer activity;P:signal transduction, protein amino acid phosphorylation, regulation of transcription, DNA-dependent;C:unknown;MPOFBVA O.I. C.G. H.G.
40.1 99.8 113.2 At3g19920 821530 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PB O.I. C.G. H.G.
39.5 99.8 106.7 At3g53040 824470 late embryogenesis abundant protein, putative / LEA protein, putative F:unknown;P:embryonic development ending in seed dormancy;C:unknown;MBOFPAV O.I. C.G. H.G.
39.2 99.8 103.2 At2g21640 816702 - Encodes a protein of unknown function that is a marker for oxidative stress response. O.I. C.G. H.G.
38.5 99.8 433.3 At5g11520 831024 ASP3 (ASPARTATE AMINOTRANSFERASE 3) Encodes the chloroplastic isozyme of aspartate aminotransferase. Involved in aspartate biosynthesis and nitrogen metabolism. mRNA is expressed in senescing leaves. O.I. C.G. H.G.
38.3 99.8 50.6 At3g15180 820749 proteasome-related F:binding;P:biological_process unknown;C:plasma membrane;MPOB O.I. C.G. H.G.
38.0 99.8 228.2 At5g66170 836749 - F:molecular_function unknown;P:aging;C:cellular_component unknown;PBOA O.I. C.G. H.G.
37.5 99.7 41.4 At5g26731 832715 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
37.4 99.7 13.6 At5g65100 836634 ethylene insensitive 3 family protein F:transcription factor activity;P:regulation of transcription;C:nucleus;PM O.I. C.G. H.G.
36.0 99.7 254.3 At1g28660 839766 lipase, putative F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM O.I. C.G. H.G.
35.9 99.7 550.5 At3g21720 821726 ICL (ISOCITRATE LYASE) Encodes a glyoxylate cycle enzyme isocitrate lyase (ICL). O.I. C.G. H.G.
35.0 99.7 110.7 At2g39980 818586 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFB O.I. C.G. H.G.
34.2 99.7 262.7 At1g06290 837140 ACX3 (ACYL-COA OXIDASE 3) Encodes an acyl-CoA oxidase with specificity for medium chain fatty acids. O.I. C.G. H.G.
34.0 99.7 39.3 At5g60220 836144 TET4 (TETRASPANIN4) Member of TETRASPANIN family O.I. C.G. H.G.
32.4 99.7 256.7 At2g30970 817648 ASP1 (ASPARTATE AMINOTRANSFERASE 1) ASPARTATE AMINOTRANSFERASE 1 O.I. C.G. H.G.
32.3 99.7 76.7 At5g13360 831177 auxin-responsive GH3 family protein F:unknown;P:response to auxin stimulus;C:cellular_component unknown;OBPMF O.I. C.G. H.G.
32.2 99.7 127.4 At5g62200 836341 embryo-specific protein-related F:molecular_function unknown;P:biological_process unknown;C:plasma membrane, anchored to membrane;P O.I. C.G. H.G.
31.4 99.7 8.4 At1g24851 839087 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;OMFBPV O.I. C.G. H.G.
30.3 99.7 162.1 At1g16210 838189 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMBFPVA O.I. C.G. H.G.
28.5 99.7 268.8 At3g45010 823636 scpl48 (serine carboxypeptidase-like 48) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOB O.I. C.G. H.G.
28.2 99.7 567.3 At2g05710 815120 aconitate hydratase, cytoplasmic, putative / citrate hydro-lyase/aconitase, putative Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds. O.I. C.G. H.G.
28.2 99.7 23.7 At3g47010 823854 hydrolase, hydrolyzing O-glycosyl compounds F:hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process;C:cellular_component unknown;BOFPAM O.I. C.G. H.G.
28.1 99.7 129.6 At3g08690 820016 UBC11 (UBIQUITIN-CONJUGATING ENZYME 11) F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:cellular_component unknown;MFOPV O.I. C.G. H.G.
28.0 99.7 58.6 At1g63180 842622 UGE3 (UDP-D-glucose/UDP-D-galactose 4-epimerase 3) Encodes a protein with UDP-D-glucose 4-epimerase activity. Involved in pollen development. O.I. C.G. H.G.
27.4 99.7 100.6 At2g41260 818725 M17 Late-embryogenesis-abundant gene. Involved in the acquisition of desiccation tolerance during late phase of embryogenesis. O.I. C.G. H.G.
27.2 99.7 119.3 At4g16210 827314 ECHIA (ENOYL-COA HYDRATASE/ISOMERASE A) F:catalytic activity;P:metabolic process;C:peroxisome;BOMFPA O.I. C.G. H.G.
26.9 99.7 68.9 At1g64110 842716 AAA-type ATPase family protein F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:endomembrane system;BOMFPAV O.I. C.G. H.G.
26.8 99.7 21.2 At3g11440 820317 MYB65 (MYB DOMAIN PROTEIN 65) Member of the R2R3-MYB gene family. Similar to GA-induced Barley myb gene. May be induced during germination in response to GA. Double mutants with MYB33 are male sterile, showing defects in pollen development and anther development. Contains a binding site for miRNA159 and may be spatially regulated by this micro RNA. The male sterile phenotype of the MYB33/MYB65 double mutant is light and temperature sensitive. Fertility can be restored with increased light intensity and lower temperatures. O.I. C.G. H.G.
26.7 99.7 528.0 At4g37870 829943 PCK1 (PHOSPHOENOLPYRUVATE CARBOXYKINASE 1) Encodes a putative phosphoenolpyruvate carboxykinase (ATP-dependent). O.I. C.G. H.G.
26.7 99.7 229.7 At4g15530 827226 PPDK (pyruvate orthophosphate dikinase) The product of this long transcript was shown to be targeted to the chloroplast, whereas the shorter transcript (no targeting sequence) accumulates in the cytosol. They were also found in slightly different tissues. O.I. C.G. H.G.
25.9 99.7 329.4 At2g31980 817757 cysteine proteinase inhibitor-related F:cysteine-type endopeptidase inhibitor activity;P:biological_process unknown;C:endomembrane system;PMO O.I. C.G. H.G.
25.7 99.7 106.5 At4g17830 827506 peptidase M20/M25/M40 family protein F:metallopeptidase activity, hydrolase activity, protein dimerization activity;P:proteolysis;C:unknown;BOMAFP O.I. C.G. H.G.
25.1 99.6 280.5 At1g12780 837834 UGE1 (UDP-D-glucose/UDP-D-galactose 4-epimerase 1) Encodes a UDP-glucose epimerase that catalyzes the interconversion of the sugar nucleotides UDP-glucose UDP-galactose via a UDP-4-keto-hexose intermediate. Responsive to stress. O.I. C.G. H.G.
25.1 99.6 93.3 At3g28210 822447 PMZ Encodes a putative zinc finger protein (PMZ). O.I. C.G. H.G.
24.5 99.6 126.9 At4g05390 825887 ATRFNR1 (ROOT FNR 1) Encodes a root-type ferredoxin:NADP(H) oxidoreductase. O.I. C.G. H.G.
24.5 99.6 30.7 At1g69600 843296 ZFHD1 (ZINC FINGER HOMEODOMAIN 1) Encodes ZFHD1, a member of the zinc finger homeodomain transcriptional factor family. Binds to the 62 bp promoter region of ERD1 (early responsive to dehydration stress 1). Expression of ZFHD1 is induced by drought, high salinity and abscisic acid. O.I. C.G. H.G.
24.1 99.6 460.4 At4g01610 826792 cathepsin B-like cysteine protease, putative F:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis, regulation of catalytic activity;C:vacuole;MOPVBAF O.I. C.G. H.G.
24.1 99.6 141.1 At5g51940 835269 NRPB6A One of two highly similar proteins that can serve as a non-catalytic subunit of nuclear DNA-dependent RNA polymerases II, IV and V; homologous to budding yeast RPB6 and the E. coli RNA polymerase omega subunit. Probably redundant with At2g04630. O.I. C.G. H.G.
24.0 99.6 348.2 At4g31300 829257 PBA1 Encodes 20S proteasome subunit PBA1 (PBA1). O.I. C.G. H.G.
24.0 99.6 234.9 At3g06860 819870 MFP2 (MULTIFUNCTIONAL PROTEIN 2) Encodes a multifunctional protein. Involved in peroxisomal fatty acid beta oxidation. Loss-of-function mutant lacks hydroxyacyl-CoA dehydrogenase activity and have reduced levels of long-chain enoyl-CoA hydratase activity. The mutant has fewer but larger peroxisomes. O.I. C.G. H.G.
23.4 99.6 366.1 At3g12580 820438 HSP70 (heat shock protein 70) F:ATP binding;P:in 8 processes;C:cytosol, mitochondrion, cell wall, plasma membrane;OBMFPVA O.I. C.G. H.G.
23.3 99.6 281.1 At1g67250 843045 proteasome maturation factor UMP1 family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOF O.I. C.G. H.G.
23.0 99.6 56.6 At3g60070 825177 - F:molecular_function unknown;P:biological_process unknown;C:membrane;BOMPF O.I. C.G. H.G.
22.9 99.6 174.3 At1g32560 840150 late embryogenesis abundant group 1 domain-containing protein / LEA group 1 domain-containing protein F:molecular_function unknown;P:embryonic development ending in seed dormancy, embryonic development;C:cellular_component unknown;PMO O.I. C.G. H.G.
22.7 99.6 65.0 At3g62810 825456 complex 1 family protein / LVR family protein F:catalytic activity;P:unknown;C:unknown;MFPO O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
615.7	100.0	270.4	At5g10120	830876	ethylene insensitive 3 family protein	F:transcription factor activity;P:regulation of transcription;C:nucleus;POM	O.I.	C.G.	H.G.
303.3	100.0	676.3	At5g05290	830411	ATEXPA2 (ARABIDOPSIS THALIANA EXPANSIN A2)	Encodes an expansin. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)	O.I.	C.G.	H.G.
247.5	100.0	410.9	At1g73220	843656	AtOCT1 (Arabidopsis thaliana ORGANIC CATION/CARNITINE TRANSPORTER1)	F:carnitine transporter activity, transporter activity, carbohydrate transmembrane transporter activity;P:unknown;C:plasma membrane, membrane;BMFPOA	O.I.	C.G.	H.G.
227.4	100.0	554.4	At1g73120	843643	unknown protein	F:molecular_function unknown;P:response to oxidative stress;C:unknown;P	O.I.	C.G.	H.G.
218.9	100.0	99.8	At5g39100	833903	GLP6 (GERMIN-LIKE PROTEIN 6)	germin-like protein (GLP6)	O.I.	C.G.	H.G.
198.9	100.0	97.9	At2g42430	818843	LBD16 (LATERAL ORGAN BOUNDARIES-DOMAIN 16)	LOB-domain protein gene LBD16. This gene contains one auxin-responsive element (AuxRE).	O.I.	C.G.	H.G.
198.2	100.0	147.6	At3g22880	821860	DMC1 (DISRUPTION OF MEIOTIC CONTROL 1)	Expression of the AtDMC1 is restricted to pollen mother cells in anthers and to megaspore mother cells in ovules. Similar to meiosis-specific yeast DMC gene.	O.I.	C.G.	H.G.
149.5	99.9	42.2	At2g27300	817273	NTL8 (NTM1-LIKE 8)	F:transcription factor activity;P:multicellular organismal development, response to salt stress, seed germination;C:plasma membrane;P	O.I.	C.G.	H.G.
133.8	99.9	100.9	At5g54300	835518	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPOFBA	O.I.	C.G.	H.G.
123.3	99.9	225.6	At1g17020	838272	SRG1 (SENESCENCE-RELATED GENE 1)	Encodes a novel member of the Fe(II)/ascorbate oxidase gene family; senescence-related gene.	O.I.	C.G.	H.G.
112.7	99.9	490.5	At4g36880	829841	CP1 (CYSTEINE PROTEINASE1)	F:cysteine-type peptidase activity, cysteine-type endopeptidase activity;P:proteolysis, response to gibberellin stimulus, response to red light;C:endomembrane system;MOPVBAF	O.I.	C.G.	H.G.
107.0	99.9	94.5	At1g60090	842304	BGLU4 (BETA GLUCOSIDASE 4)	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;BOPMFA	O.I.	C.G.	H.G.
100.1	99.9	263.7	At1g17490	838322	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
99.4	99.9	110.4	At4g21490	828234	NDB3	F:NADH dehydrogenase activity;P:unknown;C:unknown;BOFPAM	O.I.	C.G.	H.G.
94.6	99.9	93.7	At4g31330	829260	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BPO	O.I.	C.G.	H.G.
93.8	99.9	82.5	At2g46950	819309	CYP709B2	member of CYP709B	O.I.	C.G.	H.G.
90.3	99.9	127.1	At5g10300	830894	MES5 (METHYL ESTERASE 5)	Encodes a protein predicted to act as a carboxylesterase. It has similarity to the SABP2 methyl salicylate esterase from tobacco. This protein does not act on methyl IAA, methyl JA, MeSA, MeGA4, or MEGA9 in vitro.	O.I.	C.G.	H.G.
87.9	99.9	21.7	At1g32740	840168	protein binding / zinc ion binding	F:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MPOFVB	O.I.	C.G.	H.G.
87.5	99.9	45.8	At2g34960	818060	CAT5 (CATIONIC AMINO ACID TRANSPORTER 5)	Encodes a member of the cationic amino acid transporter (CAT) subfamily of amino acid polyamine choline transporters. Mediates efficient uptake of Lys, Arg and Glu in a yeast system. Localized to the plasma membrane.	O.I.	C.G.	H.G.
85.6	99.9	167.3	At2g24280	816963	serine carboxypeptidase S28 family protein	F:serine-type peptidase activity, serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system, lysosome;MOFPB	O.I.	C.G.	H.G.
83.2	99.9	313.5	At4g12910	826903	scpl20 (serine carboxypeptidase-like 20)	F:serine-type carboxypeptidase activity;P:proteolysis;C:vacuole;PMFOB	O.I.	C.G.	H.G.
80.7	99.9	139.3	At4g18910	827626	NIP1	Encodes an aquaporin homolog. Functions in arsenite transport and tolerance.	O.I.	C.G.	H.G.
74.2	99.9	307.2	At1g75830	843916	LCR67	Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.	O.I.	C.G.	H.G.
68.7	99.9	207.4	At2g39420	818527	esterase/lipase/thioesterase family protein	F:catalytic activity;P:unknown;C:unknown;BOPMFVA	O.I.	C.G.	H.G.
66.7	99.8	347.1	At2g27380	817282	ATEPR1	Encodes an extensin like gene involved in seed germination.	O.I.	C.G.	H.G.
64.5	99.8	302.7	At3g45310	823669	cysteine proteinase, putative	F:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis;C:endomembrane system;MOPBVAF	O.I.	C.G.	H.G.
63.0	99.8	282.1	At1g02640	837940	BXL2 (BETA-XYLOSIDASE 2)	encodes a protein similar to a beta-xylosidase located in the extracellular matrix. This is a member of glycosyl hydrolase family 3 and has six other closely related members.	O.I.	C.G.	H.G.
62.3	99.8	117.3	At5g55200	835613	co-chaperone grpE protein, putative	F:ATP binding;P:protein folding;C:mitochondrion;BOMFPA	O.I.	C.G.	H.G.
62.0	99.8	407.1	At5g42890	834300	SCP2 (STEROL CARRIER PROTEIN 2)	F:sterol carrier activity, oxidoreductase activity;P:glyoxylate metabolic process, intracellular lipid transport, fatty acid beta-oxidation, seed germination;C:peroxisome;MFOPB	O.I.	C.G.	H.G.
61.3	99.8	276.0	At2g02040	814735	PTR2 (PEPTIDE TRANSPORTER 2)	Encodes a di- and tri-peptide transporter that recognizes a variety of different amino acid combinations. Expression of the transcripts for this gene can be detected in the embryo through in situ hybridization. This protein does not have nitrate transporter activity based on oocyte transport assays.	O.I.	C.G.	H.G.
60.9	99.8	34.1	At4g39500	830104	CYP96A11	member of CYP96A	O.I.	C.G.	H.G.
59.8	99.8	35.9	At3g07130	819899	PAP15 (PURPLE ACID PHOSPHATASE 15)	F:protein serine/threonine phosphatase activity, acid phosphatase activity;P:biological_process unknown;C:endomembrane system;BPOMFA	O.I.	C.G.	H.G.
57.9	99.8	73.2	At4g24150	828515	AtGRF8 (GROWTH-REGULATING FACTOR 8)	Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Involved in leaf development and expressed in shoot and flower.	O.I.	C.G.	H.G.
57.5	99.8	58.8	At3g42850	823331	galactokinase, putative	F:kinase activity, phosphotransferase activity, alcohol group as acceptor, galactokinase activity, ATP binding;P:metabolic process, phosphorylation;C:cytoplasm;BOMFPA	O.I.	C.G.	H.G.
57.0	99.8	177.5	At3g53230	824489	cell division cycle protein 48, putative / CDC48, putative	F:hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding;P:response to cadmium ion;C:cytosol, nucleolus, plasma membrane;BOMFPAV	O.I.	C.G.	H.G.
54.5	99.8	99.6	At1g09100	837431	RPT5B (26S proteasome AAA-ATPase subunit RPT5B)	Encodes RPT5b (Regulatory Particle 5b), one of the six AAA-ATPases of the proteasome regulatory particle. Essential for gametophyte development. In Arabidopsis, the RPT5 subunit is encoded by two highly homologous genes, RPT5a and RPT5b. RPT5a and RPT5b show accession-dependent functional redundancy. In Wassilewskija (Ws) accession: mutant alleles of RPT5a displayed 50% pollen lethality, indicating that RPT5a is essential for male gametophyte development. In the Columbia (Col) accession, a rpt5a mutant allele did not display such a phenotype because the RPT5b Col allele complements the rpt5a defect in the male gametophyte, whereas the RPT5b Ws allele does not. Double rpt5a rpt5b mutants in Col background showed a complete male and female gametophyte lethal phenotype.	O.I.	C.G.	H.G.
52.9	99.8	32.9	At5g40010	833998	AATP1 (AAA-ATPase 1)	F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:unknown;OMBFPAV	O.I.	C.G.	H.G.
52.7	99.8	53.0	At5g14180	831268	MPL1 (MYZUS PERSICAE-INDUCED LIPASE 1)	F:catalytic activity;P:glycerol biosynthetic process, lipid metabolic process;C:endomembrane system;MFPBO	O.I.	C.G.	H.G.
52.4	99.8	17.7	At5g05420	830425	immunophilin, putative / FKBP-type peptidyl-prolyl cis-trans isomerase, putative	F:FK506 binding, peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:chloroplast thylakoid lumen;BMOPFA	O.I.	C.G.	H.G.
50.1	99.8	258.8	At5g65110	836635	ACX2 (ACYL-COA OXIDASE 2)	Encodes an acyl-CoA oxidase presumably involved in long chain fatty acid biosynthesis.	O.I.	C.G.	H.G.
49.7	99.8	240.3	At2g35300	818097	late embryogenesis abundant group 1 domain-containing protein / LEA group 1 domain-containing protein	F:molecular_function unknown;P:embryonic development ending in seed dormancy, pollen tube development;C:cellular_component unknown;P	O.I.	C.G.	H.G.
48.9	99.8	181.4	At1g13080	837865	CYP71B2 (CYTOCHROME P450 71B2)	cytochrome P450 monooxygenase	O.I.	C.G.	H.G.
48.2	99.8	82.4	At3g62860	825461	esterase/lipase/thioesterase family protein	F:catalytic activity;P:unknown;C:plasma membrane;BOPMFVA	O.I.	C.G.	H.G.
48.0	99.8	195.6	At5g66140	836746	PAD2 (PROTEASOME ALPHA SUBUNIT D 2)	Encodes alpha5 subunit of 20S proteosome complex involved in protein degradation.	O.I.	C.G.	H.G.
47.4	99.8	78.6	At2g23620	816894	MES1 (METHYL ESTERASE 1)	Encodes a protein shown to have carboxylesterase activity, methyl salicylate esterase activity, methyl jasmonate esterase activity, and methyl IAA esterase activity in vitro. MES1 appears to be involved in MeSA hydrolysis in planta. Expression of MES1 can restore systemic acquired resistance in SAR-deficient tobacco plants. This protein does not act on MeGA4, or MEGA9 in vitro.	O.I.	C.G.	H.G.
46.2	99.8	73.9	At3g05290	819693	PNC1 (PEROXISOMAL ADENINE NUCLEOTIDE CARRIER 1)	encodes a peroxisomal adenine nucleotide transporter, involved in fatty acid beta-oxidation during early stage of postgerminative growth.	O.I.	C.G.	H.G.
45.5	99.8	366.6	At5g47550	834805	cysteine protease inhibitor, putative / cystatin, putative	F:cysteine-type endopeptidase inhibitor activity;P:biological_process unknown;C:cell wall;PMOB	O.I.	C.G.	H.G.
44.4	99.8	264.9	At1g80460	844385	NHO1 (nonhost resistance to P. s. phaseolicola 1)	Encodes a protein similar to glycerol kinase, which converts glycerol to glycerol 3-phosphate and performs a rate-limiting step in glycerol metabolism. This gene is required for both general and specific resistance against bacteria and fungi. Arabidopsis thaliana glycerol kinase (GLR1) mRNA.Involved in flagellin-induced non-host resistance to Pseudomonas. Coronatine partially suppresses flagellin-induced expression of NHO1.	O.I.	C.G.	H.G.
43.6	99.8	97.2	At4g22290	828324	ubiquitin thiolesterase	F:ubiquitin thiolesterase activity;P:ubiquitin-dependent protein catabolic process;C:unknown;PMBO	O.I.	C.G.	H.G.
43.2	99.8	364.8	At5g03860	831690	MLS (MALATE SYNTHASE)	Encodes a protein with malate synthase activity.	O.I.	C.G.	H.G.
43.1	99.8	256.7	At2g42790	818879	CSY3 (citrate synthase 3)	Encodes a peroxisomal citrate synthase that is expressed throughout seedling and shoot development.	O.I.	C.G.	H.G.
42.8	99.8	36.0	At4g24660	828568	ATHB22 (HOMEOBOX PROTEIN 22)	F:transcription factor activity, DNA binding;P:embryonic development ending in seed dormancy;C:nucleus;PM	O.I.	C.G.	H.G.
42.2	99.8	122.7	At2g36640	818236	ATECP63 (EMBRYONIC CELL PROTEIN 63)	Encodes putative phosphotyrosine protein belonging to late embryogenesis abundant (LEA) protein in group 3 that might be involved in maturation and desiccation tolerance of seeds. RFLP and CAPS mapping place it on chromosome 4 but the nucleotide sequence maps it to chromosome 2.	O.I.	C.G.	H.G.
42.1	99.8	62.3	At3g14610	820689	CYP72A7	putative cytochrome P450	O.I.	C.G.	H.G.
41.2	99.8	61.4	At1g79520	844290	cation efflux family protein	F:cation transmembrane transporter activity;P:cation transport;C:plasma membrane, membrane;BFOPAM	O.I.	C.G.	H.G.
41.0	99.8	83.3	At4g23050	828404	protein kinase, putative	F:protein serine/threonine/tyrosine kinase activity, protein kinase activity, signal transducer activity;P:signal transduction, protein amino acid phosphorylation, regulation of transcription, DNA-dependent;C:unknown;MPOFBVA	O.I.	C.G.	H.G.
40.1	99.8	113.2	At3g19920	821530	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PB	O.I.	C.G.	H.G.
39.5	99.8	106.7	At3g53040	824470	late embryogenesis abundant protein, putative / LEA protein, putative	F:unknown;P:embryonic development ending in seed dormancy;C:unknown;MBOFPAV	O.I.	C.G.	H.G.
39.2	99.8	103.2	At2g21640	816702	-	Encodes a protein of unknown function that is a marker for oxidative stress response.	O.I.	C.G.	H.G.
38.5	99.8	433.3	At5g11520	831024	ASP3 (ASPARTATE AMINOTRANSFERASE 3)	Encodes the chloroplastic isozyme of aspartate aminotransferase. Involved in aspartate biosynthesis and nitrogen metabolism. mRNA is expressed in senescing leaves.	O.I.	C.G.	H.G.
38.3	99.8	50.6	At3g15180	820749	proteasome-related	F:binding;P:biological_process unknown;C:plasma membrane;MPOB	O.I.	C.G.	H.G.
38.0	99.8	228.2	At5g66170	836749	-	F:molecular_function unknown;P:aging;C:cellular_component unknown;PBOA	O.I.	C.G.	H.G.
37.5	99.7	41.4	At5g26731	832715	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
37.4	99.7	13.6	At5g65100	836634	ethylene insensitive 3 family protein	F:transcription factor activity;P:regulation of transcription;C:nucleus;PM	O.I.	C.G.	H.G.
36.0	99.7	254.3	At1g28660	839766	lipase, putative	F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM	O.I.	C.G.	H.G.
35.9	99.7	550.5	At3g21720	821726	ICL (ISOCITRATE LYASE)	Encodes a glyoxylate cycle enzyme isocitrate lyase (ICL).	O.I.	C.G.	H.G.
35.0	99.7	110.7	At2g39980	818586	transferase family protein	F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFB	O.I.	C.G.	H.G.
34.2	99.7	262.7	At1g06290	837140	ACX3 (ACYL-COA OXIDASE 3)	Encodes an acyl-CoA oxidase with specificity for medium chain fatty acids.	O.I.	C.G.	H.G.
34.0	99.7	39.3	At5g60220	836144	TET4 (TETRASPANIN4)	Member of TETRASPANIN family	O.I.	C.G.	H.G.
32.4	99.7	256.7	At2g30970	817648	ASP1 (ASPARTATE AMINOTRANSFERASE 1)	ASPARTATE AMINOTRANSFERASE 1	O.I.	C.G.	H.G.
32.3	99.7	76.7	At5g13360	831177	auxin-responsive GH3 family protein	F:unknown;P:response to auxin stimulus;C:cellular_component unknown;OBPMF	O.I.	C.G.	H.G.
32.2	99.7	127.4	At5g62200	836341	embryo-specific protein-related	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane, anchored to membrane;P	O.I.	C.G.	H.G.
31.4	99.7	8.4	At1g24851	839087	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;OMFBPV	O.I.	C.G.	H.G.
30.3	99.7	162.1	At1g16210	838189	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMBFPVA	O.I.	C.G.	H.G.
28.5	99.7	268.8	At3g45010	823636	scpl48 (serine carboxypeptidase-like 48)	F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOB	O.I.	C.G.	H.G.
28.2	99.7	567.3	At2g05710	815120	aconitate hydratase, cytoplasmic, putative / citrate hydro-lyase/aconitase, putative	Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds.	O.I.	C.G.	H.G.
28.2	99.7	23.7	At3g47010	823854	hydrolase, hydrolyzing O-glycosyl compounds	F:hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process;C:cellular_component unknown;BOFPAM	O.I.	C.G.	H.G.
28.1	99.7	129.6	At3g08690	820016	UBC11 (UBIQUITIN-CONJUGATING ENZYME 11)	F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:cellular_component unknown;MFOPV	O.I.	C.G.	H.G.
28.0	99.7	58.6	At1g63180	842622	UGE3 (UDP-D-glucose/UDP-D-galactose 4-epimerase 3)	Encodes a protein with UDP-D-glucose 4-epimerase activity. Involved in pollen development.	O.I.	C.G.	H.G.
27.4	99.7	100.6	At2g41260	818725	M17	Late-embryogenesis-abundant gene. Involved in the acquisition of desiccation tolerance during late phase of embryogenesis.	O.I.	C.G.	H.G.
27.2	99.7	119.3	At4g16210	827314	ECHIA (ENOYL-COA HYDRATASE/ISOMERASE A)	F:catalytic activity;P:metabolic process;C:peroxisome;BOMFPA	O.I.	C.G.	H.G.
26.9	99.7	68.9	At1g64110	842716	AAA-type ATPase family protein	F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:endomembrane system;BOMFPAV	O.I.	C.G.	H.G.
26.8	99.7	21.2	At3g11440	820317	MYB65 (MYB DOMAIN PROTEIN 65)	Member of the R2R3-MYB gene family. Similar to GA-induced Barley myb gene. May be induced during germination in response to GA. Double mutants with MYB33 are male sterile, showing defects in pollen development and anther development. Contains a binding site for miRNA159 and may be spatially regulated by this micro RNA. The male sterile phenotype of the MYB33/MYB65 double mutant is light and temperature sensitive. Fertility can be restored with increased light intensity and lower temperatures.	O.I.	C.G.	H.G.
26.7	99.7	528.0	At4g37870	829943	PCK1 (PHOSPHOENOLPYRUVATE CARBOXYKINASE 1)	Encodes a putative phosphoenolpyruvate carboxykinase (ATP-dependent).	O.I.	C.G.	H.G.
26.7	99.7	229.7	At4g15530	827226	PPDK (pyruvate orthophosphate dikinase)	The product of this long transcript was shown to be targeted to the chloroplast, whereas the shorter transcript (no targeting sequence) accumulates in the cytosol. They were also found in slightly different tissues.	O.I.	C.G.	H.G.
25.9	99.7	329.4	At2g31980	817757	cysteine proteinase inhibitor-related	F:cysteine-type endopeptidase inhibitor activity;P:biological_process unknown;C:endomembrane system;PMO	O.I.	C.G.	H.G.
25.7	99.7	106.5	At4g17830	827506	peptidase M20/M25/M40 family protein	F:metallopeptidase activity, hydrolase activity, protein dimerization activity;P:proteolysis;C:unknown;BOMAFP	O.I.	C.G.	H.G.
25.1	99.6	280.5	At1g12780	837834	UGE1 (UDP-D-glucose/UDP-D-galactose 4-epimerase 1)	Encodes a UDP-glucose epimerase that catalyzes the interconversion of the sugar nucleotides UDP-glucose UDP-galactose via a UDP-4-keto-hexose intermediate. Responsive to stress.	O.I.	C.G.	H.G.
25.1	99.6	93.3	At3g28210	822447	PMZ	Encodes a putative zinc finger protein (PMZ).	O.I.	C.G.	H.G.
24.5	99.6	126.9	At4g05390	825887	ATRFNR1 (ROOT FNR 1)	Encodes a root-type ferredoxin:NADP(H) oxidoreductase.	O.I.	C.G.	H.G.
24.5	99.6	30.7	At1g69600	843296	ZFHD1 (ZINC FINGER HOMEODOMAIN 1)	Encodes ZFHD1, a member of the zinc finger homeodomain transcriptional factor family. Binds to the 62 bp promoter region of ERD1 (early responsive to dehydration stress 1). Expression of ZFHD1 is induced by drought, high salinity and abscisic acid.	O.I.	C.G.	H.G.
24.1	99.6	460.4	At4g01610	826792	cathepsin B-like cysteine protease, putative	F:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis, regulation of catalytic activity;C:vacuole;MOPVBAF	O.I.	C.G.	H.G.
24.1	99.6	141.1	At5g51940	835269	NRPB6A	One of two highly similar proteins that can serve as a non-catalytic subunit of nuclear DNA-dependent RNA polymerases II, IV and V; homologous to budding yeast RPB6 and the E. coli RNA polymerase omega subunit. Probably redundant with At2g04630.	O.I.	C.G.	H.G.
24.0	99.6	348.2	At4g31300	829257	PBA1	Encodes 20S proteasome subunit PBA1 (PBA1).	O.I.	C.G.	H.G.
24.0	99.6	234.9	At3g06860	819870	MFP2 (MULTIFUNCTIONAL PROTEIN 2)	Encodes a multifunctional protein. Involved in peroxisomal fatty acid beta oxidation. Loss-of-function mutant lacks hydroxyacyl-CoA dehydrogenase activity and have reduced levels of long-chain enoyl-CoA hydratase activity. The mutant has fewer but larger peroxisomes.	O.I.	C.G.	H.G.
23.4	99.6	366.1	At3g12580	820438	HSP70 (heat shock protein 70)	F:ATP binding;P:in 8 processes;C:cytosol, mitochondrion, cell wall, plasma membrane;OBMFPVA	O.I.	C.G.	H.G.
23.3	99.6	281.1	At1g67250	843045	proteasome maturation factor UMP1 family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOF	O.I.	C.G.	H.G.
23.0	99.6	56.6	At3g60070	825177	-	F:molecular_function unknown;P:biological_process unknown;C:membrane;BOMPF	O.I.	C.G.	H.G.
22.9	99.6	174.3	At1g32560	840150	late embryogenesis abundant group 1 domain-containing protein / LEA group 1 domain-containing protein	F:molecular_function unknown;P:embryonic development ending in seed dormancy, embryonic development;C:cellular_component unknown;PMO	O.I.	C.G.	H.G.
22.7	99.6	65.0	At3g62810	825456	complex 1 family protein / LVR family protein	F:catalytic activity;P:unknown;C:unknown;MFPO	O.I.	C.G.	H.G.

Back to the CoP portal site

Back to the KAGIANA project homepage

GSM ID	GSM134306
Assay name	Penfield_1-8_endosperm-PAC_Rep2_ATH1
GSE experiment	GSE5751: The early post-germinative embryo and endosperm transcriptomes in Arabidopsis

Microarray experiments to specifically-expressed genes

GSM ID GSM134306 Assay name Penfield_1-8_endosperm-PAC_Rep2_ATH1 GSE experiment GSE5751: The early post-germinative embryo and endosperm transcriptomes in Arabidopsis

GSM ID GSM134306

Assay name Penfield_1-8_endosperm-PAC_Rep2_ATH1

GSE experiment GSE5751: The early post-germinative embryo and endosperm transcriptomes in Arabidopsis