CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM134301

Assay name Penfield_1-3_endosperm-control_Rep3_ATH1

GSE experiment GSE5751: The early post-germinative embryo and endosperm transcriptomes in Arabidopsis

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
950.0 100.0 341.5 At4g21490 828234 NDB3 F:NADH dehydrogenase activity;P:unknown;C:unknown;BOFPAM O.I. C.G. H.G.
898.9 100.0 255.4 At2g46950 819309 CYP709B2 member of CYP709B O.I. C.G. H.G.
695.3 100.0 209.9 At1g29080 839783 peptidase C1A papain family protein F:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis;C:endomembrane system;MOPVBAF O.I. C.G. H.G.
517.2 100.0 238.5 At3g22880 821860 DMC1 (DISRUPTION OF MEIOTIC CONTROL 1) Expression of the AtDMC1 is restricted to pollen mother cells in anthers and to megaspore mother cells in ovules. Similar to meiosis-specific yeast DMC gene. O.I. C.G. H.G.
401.0 100.0 736.3 At1g73120 843643 unknown protein F:molecular_function unknown;P:response to oxidative stress;C:unknown;P O.I. C.G. H.G.
353.5 100.0 228.5 At2g27920 817336 SCPL51 (SERINE CARBOXYPEPTIDASE-LIKE 51) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PFMOB O.I. C.G. H.G.
344.0 100.0 720.3 At5g05290 830411 ATEXPA2 (ARABIDOPSIS THALIANA EXPANSIN A2) Encodes an expansin. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) O.I. C.G. H.G.
335.6 100.0 156.5 At4g26790 828786 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOM O.I. C.G. H.G.
301.2 100.0 413.1 At1g29090 839784 peptidase C1A papain family protein F:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis;C:endomembrane system;MOPVBAF O.I. C.G. H.G.
287.8 100.0 603.1 At1g02640 837940 BXL2 (BETA-XYLOSIDASE 2) encodes a protein similar to a beta-xylosidase located in the extracellular matrix. This is a member of glycosyl hydrolase family 3 and has six other closely related members. O.I. C.G. H.G.
276.1 100.0 48.8 At1g01380 838096 ETC1 (ENHANCER OF TRY AND CPC 1) ETC1 is involved in trichome and root hair patterning in Arabidopsis. O.I. C.G. H.G.
270.8 100.0 237.4 At1g49470 841370 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PM O.I. C.G. H.G.
264.7 100.0 201.5 At5g08370 830735 AtAGAL2 (Arabidopsis thaliana ALPHA-GALACTOSIDASE 2) F:alpha-galactosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:positive regulation of flower development, leaf morphogenesis;C:plant-type cell wall;MBFOP O.I. C.G. H.G.
264.2 100.0 125.9 At3g42850 823331 galactokinase, putative F:kinase activity, phosphotransferase activity, alcohol group as acceptor, galactokinase activity, ATP binding;P:metabolic process, phosphorylation;C:cytoplasm;BOMFPA O.I. C.G. H.G.
253.4 100.0 77.8 At2g34080 817969 cysteine proteinase, putative F:cysteine-type peptidase activity, cysteine-type endopeptidase activity;P:proteolysis;C:endomembrane system;MOPVBAF O.I. C.G. H.G.
252.2 100.0 322.7 At1g17020 838272 SRG1 (SENESCENCE-RELATED GENE 1) Encodes a novel member of the Fe(II)/ascorbate oxidase gene family; senescence-related gene. O.I. C.G. H.G.
250.0 100.0 87.4 At3g09520 820109 ATEXO70H4 (exocyst subunit EXO70 family protein H4) A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree. O.I. C.G. H.G.
227.5 100.0 393.8 At1g73220 843656 AtOCT1 (Arabidopsis thaliana ORGANIC CATION/CARNITINE TRANSPORTER1) F:carnitine transporter activity, transporter activity, carbohydrate transmembrane transporter activity;P:unknown;C:plasma membrane, membrane;BMFPOA O.I. C.G. H.G.
212.5 100.0 44.1 At5g36110 833607 CYP716A1 member of CYP716A O.I. C.G. H.G.
208.8 100.0 509.4 At2g02040 814735 PTR2 (PEPTIDE TRANSPORTER 2) Encodes a di- and tri-peptide transporter that recognizes a variety of different amino acid combinations. Expression of the transcripts for this gene can be detected in the embryo through in situ hybridization. This protein does not have nitrate transporter activity based on oocyte transport assays. O.I. C.G. H.G.
202.6 100.0 62.2 At4g39500 830104 CYP96A11 member of CYP96A O.I. C.G. H.G.
187.7 100.0 245.7 At1g43780 840974 scpl44 (serine carboxypeptidase-like 44) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFBO O.I. C.G. H.G.
184.7 100.0 210.7 At4g18910 827626 NIP1 Encodes an aquaporin homolog. Functions in arsenite transport and tolerance. O.I. C.G. H.G.
182.2 100.0 572.3 At1g28660 839766 lipase, putative F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM O.I. C.G. H.G.
170.6 100.0 119.3 At1g60090 842304 BGLU4 (BETA GLUCOSIDASE 4) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;BOPMFA O.I. C.G. H.G.
170.2 100.0 602.6 At4g36880 829841 CP1 (CYSTEINE PROTEINASE1) F:cysteine-type peptidase activity, cysteine-type endopeptidase activity;P:proteolysis, response to gibberellin stimulus, response to red light;C:endomembrane system;MOPVBAF O.I. C.G. H.G.
168.7 100.0 90.2 At2g42430 818843 LBD16 (LATERAL ORGAN BOUNDARIES-DOMAIN 16) LOB-domain protein gene LBD16. This gene contains one auxin-responsive element (AuxRE). O.I. C.G. H.G.
164.6 100.0 333.1 At1g13080 837865 CYP71B2 (CYTOCHROME P450 71B2) cytochrome P450 monooxygenase O.I. C.G. H.G.
164.3 99.9 120.9 At5g58900 836007 myb family transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;PMOF O.I. C.G. H.G.
162.8 99.9 132.6 At3g23880 821971 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:nucleus;PO O.I. C.G. H.G.
158.6 99.9 432.9 At4g12910 826903 scpl20 (serine carboxypeptidase-like 20) F:serine-type carboxypeptidase activity;P:proteolysis;C:vacuole;PMFOB O.I. C.G. H.G.
155.4 99.9 91.9 At5g65970 836727 MLO10 (MILDEW RESISTANCE LOCUS O 10) A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO10 belongs to the clade III, with AtMLO5, AtMLO7, AtMLO8, and AtMLO9. The gene is expressed in root and cotyledon vascular system, in root-shoot junction and lateral root primordia and in developing siliques, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s O.I. C.G. H.G.
153.8 99.9 88.6 At3g03170 821064 unknown protein F:unknown;P:unknown;C:cellular_component unknown;P O.I. C.G. H.G.
152.2 99.9 392.0 At4g01700 828131 chitinase, putative F:chitinase activity;P:cell wall macromolecule catabolic process;C:cell wall;PBOMVF O.I. C.G. H.G.
145.4 99.9 115.7 At3g14610 820689 CYP72A7 putative cytochrome P450 O.I. C.G. H.G.
144.4 99.9 133.1 At1g63180 842622 UGE3 (UDP-D-glucose/UDP-D-galactose 4-epimerase 3) Encodes a protein with UDP-D-glucose 4-epimerase activity. Involved in pollen development. O.I. C.G. H.G.
143.9 99.9 604.3 At3g45010 823636 scpl48 (serine carboxypeptidase-like 48) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOB O.I. C.G. H.G.
128.2 99.9 133.7 At3g60070 825177 - F:molecular_function unknown;P:biological_process unknown;C:membrane;BOMPF O.I. C.G. H.G.
127.4 99.9 425.4 At3g45310 823669 cysteine proteinase, putative F:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis;C:endomembrane system;MOPBVAF O.I. C.G. H.G.
125.3 99.9 61.3 At1g71960 843527 ABC transporter family protein F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:membrane;BOMFAPV O.I. C.G. H.G.
123.8 99.9 121.3 At5g10120 830876 ethylene insensitive 3 family protein F:transcription factor activity;P:regulation of transcription;C:nucleus;POM O.I. C.G. H.G.
116.3 99.9 261.0 At1g60960 842387 IRT3 member of Fe(II) transporter isolog family O.I. C.G. H.G.
109.9 99.9 76.5 At5g14180 831268 MPL1 (MYZUS PERSICAE-INDUCED LIPASE 1) F:catalytic activity;P:glycerol biosynthetic process, lipid metabolic process;C:endomembrane system;MFPBO O.I. C.G. H.G.
107.0 99.9 272.8 At1g17490 838322 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
106.7 99.9 561.7 At5g47550 834805 cysteine protease inhibitor, putative / cystatin, putative F:cysteine-type endopeptidase inhibitor activity;P:biological_process unknown;C:cell wall;PMOB O.I. C.G. H.G.
100.6 99.9 96.6 At4g31330 829260 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BPO O.I. C.G. H.G.
91.0 99.9 172.5 At2g24280 816963 serine carboxypeptidase S28 family protein F:serine-type peptidase activity, serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system, lysosome;MOFPB O.I. C.G. H.G.
89.3 99.9 454.0 At3g44990 823634 XTR8 (XYLOGLUCAN ENDO-TRANSGLYCOSYLASE-RELATED 8) xyloglucan endo-transglycosylase O.I. C.G. H.G.
88.5 99.9 111.8 At3g62860 825461 esterase/lipase/thioesterase family protein F:catalytic activity;P:unknown;C:plasma membrane;BOPMFVA O.I. C.G. H.G.
86.3 99.9 22.8 At5g05420 830425 immunophilin, putative / FKBP-type peptidyl-prolyl cis-trans isomerase, putative F:FK506 binding, peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:chloroplast thylakoid lumen;BMOPFA O.I. C.G. H.G.
83.6 99.9 338.5 At5g66170 836749 - F:molecular_function unknown;P:aging;C:cellular_component unknown;PBOA O.I. C.G. H.G.
79.3 99.9 325.4 At5g65110 836635 ACX2 (ACYL-COA OXIDASE 2) Encodes an acyl-CoA oxidase presumably involved in long chain fatty acid biosynthesis. O.I. C.G. H.G.
79.0 99.9 146.3 At1g16170 838186 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
78.1 99.9 134.3 At2g24040 816938 hydrophobic protein, putative / low temperature and salt responsive protein, putative F:unknown;P:hyperosmotic salinity response, response to cold;C:endomembrane system, integral to membrane;PFBMO O.I. C.G. H.G.
77.9 99.9 91.5 At2g46740 819287 FAD-binding domain-containing protein F:oxidoreductase activity, D-arabinono-1,4-lactone oxidase activity, FAD binding, catalytic activity;P:unknown;C:cell wall;BOFPMA O.I. C.G. H.G.
76.8 99.9 224.4 At4g05390 825887 ATRFNR1 (ROOT FNR 1) Encodes a root-type ferredoxin:NADP(H) oxidoreductase. O.I. C.G. H.G.
76.7 99.9 389.0 At4g15530 827226 PPDK (pyruvate orthophosphate dikinase) The product of this long transcript was shown to be targeted to the chloroplast, whereas the shorter transcript (no targeting sequence) accumulates in the cytosol. They were also found in slightly different tissues. O.I. C.G. H.G.
74.0 99.9 81.1 At2g32460 817807 MYB101 Member of the R2R3 factor gene family. O.I. C.G. H.G.
73.1 99.9 57.1 At5g06330 830521 hairpin-responsive protein, putative (HIN1) F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
67.9 99.9 37.3 At2g03590 814888 ATUPS1 (ARABIDOPSIS THALIANA UREIDE PERMEASE 1) Encodes a member of a class of allantoin transporters. O.I. C.G. H.G.
66.6 99.8 270.3 At5g01040 831877 LAC8 (laccase 8) putative laccase, knockout mutant showed early flowering O.I. C.G. H.G.
65.9 99.8 40.3 At4g15230 827187 PDR2 (PLEIOTROPIC DRUG RESISTANCE 2) F:ATPase activity, coupled to transmembrane movement of substances;P:multidrug transport;C:membrane;BOMAFPV O.I. C.G. H.G.
64.6 99.8 201.2 At2g39420 818527 esterase/lipase/thioesterase family protein F:catalytic activity;P:unknown;C:unknown;BOPMFVA O.I. C.G. H.G.
63.4 99.8 192.1 At5g55050 835596 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, lipase activity, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOM O.I. C.G. H.G.
60.7 99.8 349.8 At1g06290 837140 ACX3 (ACYL-COA OXIDASE 3) Encodes an acyl-CoA oxidase with specificity for medium chain fatty acids. O.I. C.G. H.G.
59.7 99.8 283.7 At3g61070 825279 PEX11E member of the peroxin11 (PEX11) gene family, integral to peroxisome membrane, controls peroxisome proliferation. O.I. C.G. H.G.
58.7 99.8 51.8 At5g26731 832715 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
56.7 99.8 389.4 At5g42890 834300 SCP2 (STEROL CARRIER PROTEIN 2) F:sterol carrier activity, oxidoreductase activity;P:glyoxylate metabolic process, intracellular lipid transport, fatty acid beta-oxidation, seed germination;C:peroxisome;MFOPB O.I. C.G. H.G.
55.0 99.8 117.8 At1g68500 843179 unknown protein F:unknown;P:unknown;C:cellular_component unknown;P O.I. C.G. H.G.
55.0 99.8 84.7 At2g23620 816894 MES1 (METHYL ESTERASE 1) Encodes a protein shown to have carboxylesterase activity, methyl salicylate esterase activity, methyl jasmonate esterase activity, and methyl IAA esterase activity in vitro. MES1 appears to be involved in MeSA hydrolysis in planta. Expression of MES1 can restore systemic acquired resistance in SAR-deficient tobacco plants. This protein does not act on MeGA4, or MEGA9 in vitro. O.I. C.G. H.G.
53.4 99.8 148.0 At1g07690 837282 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PF O.I. C.G. H.G.
52.9 99.8 27.9 At1g17010 838271 oxidoreductase, 2OG-Fe(II) oxygenase family protein F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity, iron ion binding;P:flavonoid biosynthetic process;C:cellular_component unknown;POBFM O.I. C.G. H.G.
52.0 99.8 139.8 At4g36860 829839 zinc ion binding F:zinc ion binding;P:unknown;C:plasma membrane;MOPFB O.I. C.G. H.G.
50.7 99.8 93.0 At4g08290 826383 nodulin MtN21 family protein F:unknown;P:unknown;C:endomembrane system, membrane;BPOAMF O.I. C.G. H.G.
50.4 99.8 394.3 At5g03860 831690 MLS (MALATE SYNTHASE) Encodes a protein with malate synthase activity. O.I. C.G. H.G.
49.5 99.8 151.6 At5g13170 831156 SAG29 (SENESCENCE-ASSOCIATED PROTEIN 29) F:unknown;P:unknown;C:endomembrane system, integral to membrane, membrane;PMOB O.I. C.G. H.G.
49.0 99.8 39.6 At5g07680 830661 ANAC080 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 80) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P O.I. C.G. H.G.
46.3 99.8 31.6 At3g07130 819899 PAP15 (PURPLE ACID PHOSPHATASE 15) F:protein serine/threonine phosphatase activity, acid phosphatase activity;P:biological_process unknown;C:endomembrane system;BPOMFA O.I. C.G. H.G.
45.1 99.8 92.5 At1g14930 838058 major latex protein-related / MLP-related F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P O.I. C.G. H.G.
44.8 99.8 467.0 At5g11520 831024 ASP3 (ASPARTATE AMINOTRANSFERASE 3) Encodes the chloroplastic isozyme of aspartate aminotransferase. Involved in aspartate biosynthesis and nitrogen metabolism. mRNA is expressed in senescing leaves. O.I. C.G. H.G.
44.7 99.8 42.1 At1g08230 837344 - - O.I. C.G. H.G.
44.5 99.8 58.2 At5g54300 835518 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPOFBA O.I. C.G. H.G.
43.8 99.8 86.1 At4g23050 828404 protein kinase, putative F:protein serine/threonine/tyrosine kinase activity, protein kinase activity, signal transducer activity;P:signal transduction, protein amino acid phosphorylation, regulation of transcription, DNA-dependent;C:unknown;MPOFBVA O.I. C.G. H.G.
43.7 99.8 248.0 At2g17710 816280 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
43.5 99.8 44.5 At5g60220 836144 TET4 (TETRASPANIN4) Member of TETRASPANIN family O.I. C.G. H.G.
43.1 99.8 131.4 At4g30490 829172 AFG1-like ATPase family protein F:ATPase activity, ATP binding;P:biological_process unknown;C:unknown;OBFMP O.I. C.G. H.G.
43.0 99.8 256.2 At2g42790 818879 CSY3 (citrate synthase 3) Encodes a peroxisomal citrate synthase that is expressed throughout seedling and shoot development. O.I. C.G. H.G.
43.0 99.8 99.6 At5g20400 832162 oxidoreductase, 2OG-Fe(II) oxygenase family protein encodes a protein whose sequence is similar to flavanone 3 hydroxylase from Malus. O.I. C.G. H.G.
42.8 99.8 160.3 At3g20210 821565 DELTA-VPE Encodes a vacuolar processing enzyme with caspase-1-like activity that is specifically expressed in inner integument of developing seeds. Mutants display abnormal seed coat development. It is speculated to be involved in cell death of limited cell layers, the purpose of which is to form a seed coat. O.I. C.G. H.G.
42.6 99.8 294.2 At2g30970 817648 ASP1 (ASPARTATE AMINOTRANSFERASE 1) ASPARTATE AMINOTRANSFERASE 1 O.I. C.G. H.G.
42.4 99.8 100.1 At5g34940 833437 AtGUS3 (Arabidopsis thaliana glucuronidase 3) The protein is predicted (WoLF PSORT program) to be membrane-associated. O.I. C.G. H.G.
42.3 99.8 25.9 At3g55910 824757 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
42.0 99.8 74.2 At5g43170 834334 AZF3 (ARABIDOPSIS ZINC-FINGER PROTEIN 3) Encodes zinc finger protein. mRNA levels are elevated in response to high salinity and low temperature. The protein is localized to the nucleus and acts as a transcriptional repressor. O.I. C.G. H.G.
40.5 99.8 31.2 At2g34960 818060 CAT5 (CATIONIC AMINO ACID TRANSPORTER 5) Encodes a member of the cationic amino acid transporter (CAT) subfamily of amino acid polyamine choline transporters. Mediates efficient uptake of Lys, Arg and Glu in a yeast system. Localized to the plasma membrane. O.I. C.G. H.G.
40.4 99.8 252.7 At5g40670 834067 PQ-loop repeat family protein / transmembrane family protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane, membrane;MFOP O.I. C.G. H.G.
39.5 99.8 135.0 At3g15020 820731 malate dehydrogenase (NAD), mitochondrial, putative F:in 6 functions;P:defense response to bacterium;C:mitochondrion, apoplast, membrane;BOMPFA O.I. C.G. H.G.
39.4 99.8 45.7 At1g10970 837640 ZIP4 (ZINC TRANSPORTER 4 PRECURSOR) A member of Zrt- and Irt-related protein (ZIP) family. transcript is induced in response to zinc deficiency in the root and shoot. Expression is regulated by copper, but response to copper deficiency is detected only after three weeks of deficiency. O.I. C.G. H.G.
39.2 99.8 640.3 At4g37870 829943 PCK1 (PHOSPHOENOLPYRUVATE CARBOXYKINASE 1) Encodes a putative phosphoenolpyruvate carboxykinase (ATP-dependent). O.I. C.G. H.G.
38.8 99.8 63.8 At1g09380 837460 integral membrane family protein / nodulin MtN21-related F:unknown;P:unknown;C:endomembrane system, membrane;BOPAMF O.I. C.G. H.G.
38.6 99.8 47.6 At4g36930 829847 SPT (SPATULA) Encodes a transcription factor of the bHLH protein family. Mutants have abnormal, unfused carpels and reduced seed dormancy. O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
950.0	100.0	341.5	At4g21490	828234	NDB3	F:NADH dehydrogenase activity;P:unknown;C:unknown;BOFPAM	O.I.	C.G.	H.G.
898.9	100.0	255.4	At2g46950	819309	CYP709B2	member of CYP709B	O.I.	C.G.	H.G.
695.3	100.0	209.9	At1g29080	839783	peptidase C1A papain family protein	F:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis;C:endomembrane system;MOPVBAF	O.I.	C.G.	H.G.
517.2	100.0	238.5	At3g22880	821860	DMC1 (DISRUPTION OF MEIOTIC CONTROL 1)	Expression of the AtDMC1 is restricted to pollen mother cells in anthers and to megaspore mother cells in ovules. Similar to meiosis-specific yeast DMC gene.	O.I.	C.G.	H.G.
401.0	100.0	736.3	At1g73120	843643	unknown protein	F:molecular_function unknown;P:response to oxidative stress;C:unknown;P	O.I.	C.G.	H.G.
353.5	100.0	228.5	At2g27920	817336	SCPL51 (SERINE CARBOXYPEPTIDASE-LIKE 51)	F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PFMOB	O.I.	C.G.	H.G.
344.0	100.0	720.3	At5g05290	830411	ATEXPA2 (ARABIDOPSIS THALIANA EXPANSIN A2)	Encodes an expansin. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)	O.I.	C.G.	H.G.
335.6	100.0	156.5	At4g26790	828786	GDSL-motif lipase/hydrolase family protein	F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOM	O.I.	C.G.	H.G.
301.2	100.0	413.1	At1g29090	839784	peptidase C1A papain family protein	F:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis;C:endomembrane system;MOPVBAF	O.I.	C.G.	H.G.
287.8	100.0	603.1	At1g02640	837940	BXL2 (BETA-XYLOSIDASE 2)	encodes a protein similar to a beta-xylosidase located in the extracellular matrix. This is a member of glycosyl hydrolase family 3 and has six other closely related members.	O.I.	C.G.	H.G.
276.1	100.0	48.8	At1g01380	838096	ETC1 (ENHANCER OF TRY AND CPC 1)	ETC1 is involved in trichome and root hair patterning in Arabidopsis.	O.I.	C.G.	H.G.
270.8	100.0	237.4	At1g49470	841370	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PM	O.I.	C.G.	H.G.
264.7	100.0	201.5	At5g08370	830735	AtAGAL2 (Arabidopsis thaliana ALPHA-GALACTOSIDASE 2)	F:alpha-galactosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:positive regulation of flower development, leaf morphogenesis;C:plant-type cell wall;MBFOP	O.I.	C.G.	H.G.
264.2	100.0	125.9	At3g42850	823331	galactokinase, putative	F:kinase activity, phosphotransferase activity, alcohol group as acceptor, galactokinase activity, ATP binding;P:metabolic process, phosphorylation;C:cytoplasm;BOMFPA	O.I.	C.G.	H.G.
253.4	100.0	77.8	At2g34080	817969	cysteine proteinase, putative	F:cysteine-type peptidase activity, cysteine-type endopeptidase activity;P:proteolysis;C:endomembrane system;MOPVBAF	O.I.	C.G.	H.G.
252.2	100.0	322.7	At1g17020	838272	SRG1 (SENESCENCE-RELATED GENE 1)	Encodes a novel member of the Fe(II)/ascorbate oxidase gene family; senescence-related gene.	O.I.	C.G.	H.G.
250.0	100.0	87.4	At3g09520	820109	ATEXO70H4 (exocyst subunit EXO70 family protein H4)	A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.	O.I.	C.G.	H.G.
227.5	100.0	393.8	At1g73220	843656	AtOCT1 (Arabidopsis thaliana ORGANIC CATION/CARNITINE TRANSPORTER1)	F:carnitine transporter activity, transporter activity, carbohydrate transmembrane transporter activity;P:unknown;C:plasma membrane, membrane;BMFPOA	O.I.	C.G.	H.G.
212.5	100.0	44.1	At5g36110	833607	CYP716A1	member of CYP716A	O.I.	C.G.	H.G.
208.8	100.0	509.4	At2g02040	814735	PTR2 (PEPTIDE TRANSPORTER 2)	Encodes a di- and tri-peptide transporter that recognizes a variety of different amino acid combinations. Expression of the transcripts for this gene can be detected in the embryo through in situ hybridization. This protein does not have nitrate transporter activity based on oocyte transport assays.	O.I.	C.G.	H.G.
202.6	100.0	62.2	At4g39500	830104	CYP96A11	member of CYP96A	O.I.	C.G.	H.G.
187.7	100.0	245.7	At1g43780	840974	scpl44 (serine carboxypeptidase-like 44)	F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFBO	O.I.	C.G.	H.G.
184.7	100.0	210.7	At4g18910	827626	NIP1	Encodes an aquaporin homolog. Functions in arsenite transport and tolerance.	O.I.	C.G.	H.G.
182.2	100.0	572.3	At1g28660	839766	lipase, putative	F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM	O.I.	C.G.	H.G.
170.6	100.0	119.3	At1g60090	842304	BGLU4 (BETA GLUCOSIDASE 4)	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;BOPMFA	O.I.	C.G.	H.G.
170.2	100.0	602.6	At4g36880	829841	CP1 (CYSTEINE PROTEINASE1)	F:cysteine-type peptidase activity, cysteine-type endopeptidase activity;P:proteolysis, response to gibberellin stimulus, response to red light;C:endomembrane system;MOPVBAF	O.I.	C.G.	H.G.
168.7	100.0	90.2	At2g42430	818843	LBD16 (LATERAL ORGAN BOUNDARIES-DOMAIN 16)	LOB-domain protein gene LBD16. This gene contains one auxin-responsive element (AuxRE).	O.I.	C.G.	H.G.
164.6	100.0	333.1	At1g13080	837865	CYP71B2 (CYTOCHROME P450 71B2)	cytochrome P450 monooxygenase	O.I.	C.G.	H.G.
164.3	99.9	120.9	At5g58900	836007	myb family transcription factor	F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;PMOF	O.I.	C.G.	H.G.
162.8	99.9	132.6	At3g23880	821971	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:nucleus;PO	O.I.	C.G.	H.G.
158.6	99.9	432.9	At4g12910	826903	scpl20 (serine carboxypeptidase-like 20)	F:serine-type carboxypeptidase activity;P:proteolysis;C:vacuole;PMFOB	O.I.	C.G.	H.G.
155.4	99.9	91.9	At5g65970	836727	MLO10 (MILDEW RESISTANCE LOCUS O 10)	A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO10 belongs to the clade III, with AtMLO5, AtMLO7, AtMLO8, and AtMLO9. The gene is expressed in root and cotyledon vascular system, in root-shoot junction and lateral root primordia and in developing siliques, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s	O.I.	C.G.	H.G.
153.8	99.9	88.6	At3g03170	821064	unknown protein	F:unknown;P:unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
152.2	99.9	392.0	At4g01700	828131	chitinase, putative	F:chitinase activity;P:cell wall macromolecule catabolic process;C:cell wall;PBOMVF	O.I.	C.G.	H.G.
145.4	99.9	115.7	At3g14610	820689	CYP72A7	putative cytochrome P450	O.I.	C.G.	H.G.
144.4	99.9	133.1	At1g63180	842622	UGE3 (UDP-D-glucose/UDP-D-galactose 4-epimerase 3)	Encodes a protein with UDP-D-glucose 4-epimerase activity. Involved in pollen development.	O.I.	C.G.	H.G.
143.9	99.9	604.3	At3g45010	823636	scpl48 (serine carboxypeptidase-like 48)	F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOB	O.I.	C.G.	H.G.
128.2	99.9	133.7	At3g60070	825177	-	F:molecular_function unknown;P:biological_process unknown;C:membrane;BOMPF	O.I.	C.G.	H.G.
127.4	99.9	425.4	At3g45310	823669	cysteine proteinase, putative	F:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis;C:endomembrane system;MOPBVAF	O.I.	C.G.	H.G.
125.3	99.9	61.3	At1g71960	843527	ABC transporter family protein	F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:membrane;BOMFAPV	O.I.	C.G.	H.G.
123.8	99.9	121.3	At5g10120	830876	ethylene insensitive 3 family protein	F:transcription factor activity;P:regulation of transcription;C:nucleus;POM	O.I.	C.G.	H.G.
116.3	99.9	261.0	At1g60960	842387	IRT3	member of Fe(II) transporter isolog family	O.I.	C.G.	H.G.
109.9	99.9	76.5	At5g14180	831268	MPL1 (MYZUS PERSICAE-INDUCED LIPASE 1)	F:catalytic activity;P:glycerol biosynthetic process, lipid metabolic process;C:endomembrane system;MFPBO	O.I.	C.G.	H.G.
107.0	99.9	272.8	At1g17490	838322	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
106.7	99.9	561.7	At5g47550	834805	cysteine protease inhibitor, putative / cystatin, putative	F:cysteine-type endopeptidase inhibitor activity;P:biological_process unknown;C:cell wall;PMOB	O.I.	C.G.	H.G.
100.6	99.9	96.6	At4g31330	829260	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BPO	O.I.	C.G.	H.G.
91.0	99.9	172.5	At2g24280	816963	serine carboxypeptidase S28 family protein	F:serine-type peptidase activity, serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system, lysosome;MOFPB	O.I.	C.G.	H.G.
89.3	99.9	454.0	At3g44990	823634	XTR8 (XYLOGLUCAN ENDO-TRANSGLYCOSYLASE-RELATED 8)	xyloglucan endo-transglycosylase	O.I.	C.G.	H.G.
88.5	99.9	111.8	At3g62860	825461	esterase/lipase/thioesterase family protein	F:catalytic activity;P:unknown;C:plasma membrane;BOPMFVA	O.I.	C.G.	H.G.
86.3	99.9	22.8	At5g05420	830425	immunophilin, putative / FKBP-type peptidyl-prolyl cis-trans isomerase, putative	F:FK506 binding, peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:chloroplast thylakoid lumen;BMOPFA	O.I.	C.G.	H.G.
83.6	99.9	338.5	At5g66170	836749	-	F:molecular_function unknown;P:aging;C:cellular_component unknown;PBOA	O.I.	C.G.	H.G.
79.3	99.9	325.4	At5g65110	836635	ACX2 (ACYL-COA OXIDASE 2)	Encodes an acyl-CoA oxidase presumably involved in long chain fatty acid biosynthesis.	O.I.	C.G.	H.G.
79.0	99.9	146.3	At1g16170	838186	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
78.1	99.9	134.3	At2g24040	816938	hydrophobic protein, putative / low temperature and salt responsive protein, putative	F:unknown;P:hyperosmotic salinity response, response to cold;C:endomembrane system, integral to membrane;PFBMO	O.I.	C.G.	H.G.
77.9	99.9	91.5	At2g46740	819287	FAD-binding domain-containing protein	F:oxidoreductase activity, D-arabinono-1,4-lactone oxidase activity, FAD binding, catalytic activity;P:unknown;C:cell wall;BOFPMA	O.I.	C.G.	H.G.
76.8	99.9	224.4	At4g05390	825887	ATRFNR1 (ROOT FNR 1)	Encodes a root-type ferredoxin:NADP(H) oxidoreductase.	O.I.	C.G.	H.G.
76.7	99.9	389.0	At4g15530	827226	PPDK (pyruvate orthophosphate dikinase)	The product of this long transcript was shown to be targeted to the chloroplast, whereas the shorter transcript (no targeting sequence) accumulates in the cytosol. They were also found in slightly different tissues.	O.I.	C.G.	H.G.
74.0	99.9	81.1	At2g32460	817807	MYB101	Member of the R2R3 factor gene family.	O.I.	C.G.	H.G.
73.1	99.9	57.1	At5g06330	830521	hairpin-responsive protein, putative (HIN1)	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
67.9	99.9	37.3	At2g03590	814888	ATUPS1 (ARABIDOPSIS THALIANA UREIDE PERMEASE 1)	Encodes a member of a class of allantoin transporters.	O.I.	C.G.	H.G.
66.6	99.8	270.3	At5g01040	831877	LAC8 (laccase 8)	putative laccase, knockout mutant showed early flowering	O.I.	C.G.	H.G.
65.9	99.8	40.3	At4g15230	827187	PDR2 (PLEIOTROPIC DRUG RESISTANCE 2)	F:ATPase activity, coupled to transmembrane movement of substances;P:multidrug transport;C:membrane;BOMAFPV	O.I.	C.G.	H.G.
64.6	99.8	201.2	At2g39420	818527	esterase/lipase/thioesterase family protein	F:catalytic activity;P:unknown;C:unknown;BOPMFVA	O.I.	C.G.	H.G.
63.4	99.8	192.1	At5g55050	835596	GDSL-motif lipase/hydrolase family protein	F:hydrolase activity, acting on ester bonds, lipase activity, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOM	O.I.	C.G.	H.G.
60.7	99.8	349.8	At1g06290	837140	ACX3 (ACYL-COA OXIDASE 3)	Encodes an acyl-CoA oxidase with specificity for medium chain fatty acids.	O.I.	C.G.	H.G.
59.7	99.8	283.7	At3g61070	825279	PEX11E	member of the peroxin11 (PEX11) gene family, integral to peroxisome membrane, controls peroxisome proliferation.	O.I.	C.G.	H.G.
58.7	99.8	51.8	At5g26731	832715	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
56.7	99.8	389.4	At5g42890	834300	SCP2 (STEROL CARRIER PROTEIN 2)	F:sterol carrier activity, oxidoreductase activity;P:glyoxylate metabolic process, intracellular lipid transport, fatty acid beta-oxidation, seed germination;C:peroxisome;MFOPB	O.I.	C.G.	H.G.
55.0	99.8	117.8	At1g68500	843179	unknown protein	F:unknown;P:unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
55.0	99.8	84.7	At2g23620	816894	MES1 (METHYL ESTERASE 1)	Encodes a protein shown to have carboxylesterase activity, methyl salicylate esterase activity, methyl jasmonate esterase activity, and methyl IAA esterase activity in vitro. MES1 appears to be involved in MeSA hydrolysis in planta. Expression of MES1 can restore systemic acquired resistance in SAR-deficient tobacco plants. This protein does not act on MeGA4, or MEGA9 in vitro.	O.I.	C.G.	H.G.
53.4	99.8	148.0	At1g07690	837282	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PF	O.I.	C.G.	H.G.
52.9	99.8	27.9	At1g17010	838271	oxidoreductase, 2OG-Fe(II) oxygenase family protein	F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity, iron ion binding;P:flavonoid biosynthetic process;C:cellular_component unknown;POBFM	O.I.	C.G.	H.G.
52.0	99.8	139.8	At4g36860	829839	zinc ion binding	F:zinc ion binding;P:unknown;C:plasma membrane;MOPFB	O.I.	C.G.	H.G.
50.7	99.8	93.0	At4g08290	826383	nodulin MtN21 family protein	F:unknown;P:unknown;C:endomembrane system, membrane;BPOAMF	O.I.	C.G.	H.G.
50.4	99.8	394.3	At5g03860	831690	MLS (MALATE SYNTHASE)	Encodes a protein with malate synthase activity.	O.I.	C.G.	H.G.
49.5	99.8	151.6	At5g13170	831156	SAG29 (SENESCENCE-ASSOCIATED PROTEIN 29)	F:unknown;P:unknown;C:endomembrane system, integral to membrane, membrane;PMOB	O.I.	C.G.	H.G.
49.0	99.8	39.6	At5g07680	830661	ANAC080 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 80)	F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P	O.I.	C.G.	H.G.
46.3	99.8	31.6	At3g07130	819899	PAP15 (PURPLE ACID PHOSPHATASE 15)	F:protein serine/threonine phosphatase activity, acid phosphatase activity;P:biological_process unknown;C:endomembrane system;BPOMFA	O.I.	C.G.	H.G.
45.1	99.8	92.5	At1g14930	838058	major latex protein-related / MLP-related	F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P	O.I.	C.G.	H.G.
44.8	99.8	467.0	At5g11520	831024	ASP3 (ASPARTATE AMINOTRANSFERASE 3)	Encodes the chloroplastic isozyme of aspartate aminotransferase. Involved in aspartate biosynthesis and nitrogen metabolism. mRNA is expressed in senescing leaves.	O.I.	C.G.	H.G.
44.7	99.8	42.1	At1g08230	837344	-	-	O.I.	C.G.	H.G.
44.5	99.8	58.2	At5g54300	835518	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPOFBA	O.I.	C.G.	H.G.
43.8	99.8	86.1	At4g23050	828404	protein kinase, putative	F:protein serine/threonine/tyrosine kinase activity, protein kinase activity, signal transducer activity;P:signal transduction, protein amino acid phosphorylation, regulation of transcription, DNA-dependent;C:unknown;MPOFBVA	O.I.	C.G.	H.G.
43.7	99.8	248.0	At2g17710	816280	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
43.5	99.8	44.5	At5g60220	836144	TET4 (TETRASPANIN4)	Member of TETRASPANIN family	O.I.	C.G.	H.G.
43.1	99.8	131.4	At4g30490	829172	AFG1-like ATPase family protein	F:ATPase activity, ATP binding;P:biological_process unknown;C:unknown;OBFMP	O.I.	C.G.	H.G.
43.0	99.8	256.2	At2g42790	818879	CSY3 (citrate synthase 3)	Encodes a peroxisomal citrate synthase that is expressed throughout seedling and shoot development.	O.I.	C.G.	H.G.
43.0	99.8	99.6	At5g20400	832162	oxidoreductase, 2OG-Fe(II) oxygenase family protein	encodes a protein whose sequence is similar to flavanone 3 hydroxylase from Malus.	O.I.	C.G.	H.G.
42.8	99.8	160.3	At3g20210	821565	DELTA-VPE	Encodes a vacuolar processing enzyme with caspase-1-like activity that is specifically expressed in inner integument of developing seeds. Mutants display abnormal seed coat development. It is speculated to be involved in cell death of limited cell layers, the purpose of which is to form a seed coat.	O.I.	C.G.	H.G.
42.6	99.8	294.2	At2g30970	817648	ASP1 (ASPARTATE AMINOTRANSFERASE 1)	ASPARTATE AMINOTRANSFERASE 1	O.I.	C.G.	H.G.
42.4	99.8	100.1	At5g34940	833437	AtGUS3 (Arabidopsis thaliana glucuronidase 3)	The protein is predicted (WoLF PSORT program) to be membrane-associated.	O.I.	C.G.	H.G.
42.3	99.8	25.9	At3g55910	824757	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
42.0	99.8	74.2	At5g43170	834334	AZF3 (ARABIDOPSIS ZINC-FINGER PROTEIN 3)	Encodes zinc finger protein. mRNA levels are elevated in response to high salinity and low temperature. The protein is localized to the nucleus and acts as a transcriptional repressor.	O.I.	C.G.	H.G.
40.5	99.8	31.2	At2g34960	818060	CAT5 (CATIONIC AMINO ACID TRANSPORTER 5)	Encodes a member of the cationic amino acid transporter (CAT) subfamily of amino acid polyamine choline transporters. Mediates efficient uptake of Lys, Arg and Glu in a yeast system. Localized to the plasma membrane.	O.I.	C.G.	H.G.
40.4	99.8	252.7	At5g40670	834067	PQ-loop repeat family protein / transmembrane family protein	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane, membrane;MFOP	O.I.	C.G.	H.G.
39.5	99.8	135.0	At3g15020	820731	malate dehydrogenase (NAD), mitochondrial, putative	F:in 6 functions;P:defense response to bacterium;C:mitochondrion, apoplast, membrane;BOMPFA	O.I.	C.G.	H.G.
39.4	99.8	45.7	At1g10970	837640	ZIP4 (ZINC TRANSPORTER 4 PRECURSOR)	A member of Zrt- and Irt-related protein (ZIP) family. transcript is induced in response to zinc deficiency in the root and shoot. Expression is regulated by copper, but response to copper deficiency is detected only after three weeks of deficiency.	O.I.	C.G.	H.G.
39.2	99.8	640.3	At4g37870	829943	PCK1 (PHOSPHOENOLPYRUVATE CARBOXYKINASE 1)	Encodes a putative phosphoenolpyruvate carboxykinase (ATP-dependent).	O.I.	C.G.	H.G.
38.8	99.8	63.8	At1g09380	837460	integral membrane family protein / nodulin MtN21-related	F:unknown;P:unknown;C:endomembrane system, membrane;BOPAMF	O.I.	C.G.	H.G.
38.6	99.8	47.6	At4g36930	829847	SPT (SPATULA)	Encodes a transcription factor of the bHLH protein family. Mutants have abnormal, unfused carpels and reduced seed dormancy.	O.I.	C.G.	H.G.

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GSM ID	GSM134301
Assay name	Penfield_1-3_endosperm-control_Rep3_ATH1
GSE experiment	GSE5751: The early post-germinative embryo and endosperm transcriptomes in Arabidopsis

Microarray experiments to specifically-expressed genes

GSM ID GSM134301 Assay name Penfield_1-3_endosperm-control_Rep3_ATH1 GSE experiment GSE5751: The early post-germinative embryo and endosperm transcriptomes in Arabidopsis

GSM ID GSM134301

Assay name Penfield_1-3_endosperm-control_Rep3_ATH1

GSE experiment GSE5751: The early post-germinative embryo and endosperm transcriptomes in Arabidopsis