CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM134208

Assay name Murray_3-4_D7-GROWTH_Rep1_ATH1

GSE experiment GSE5750: Growth of suspension-cultured cells

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
738.7 100.0 108.1 At4g39320 830087 microtubule-associated protein-related F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MOFBP O.I. C.G. H.G.
555.5 100.0 87.9 At5g60470 836168 nucleic acid binding / transcription factor/ zinc ion binding F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;MOPF O.I. C.G. H.G.
488.6 100.0 201.8 At1g68290 843158 ENDO 2 (endonuclease 2) Encodes a putative endonuclease but no demonstrable endonuclease activity, either towards single stranded DNA or mismatches, has been seen in vitro. O.I. C.G. H.G.
455.9 100.0 133.3 At5g50130 835078 short-chain dehydrogenase/reductase (SDR) family protein F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPA O.I. C.G. H.G.
364.6 100.0 333.9 At1g71380 843479 ATCEL3 (ARABIDOPSIS THALIANA CELLULASE 3) F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:cell wall, plasma membrane, plant-type cell wall;PBMOF O.I. C.G. H.G.
346.9 100.0 170.8 At2g25790 817121 leucine-rich repeat transmembrane protein kinase, putative F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:plasma membrane;PMOBFAV O.I. C.G. H.G.
345.2 100.0 178.2 At1g60030 842297 xanthine/uracil permease family protein F:transmembrane transporter activity;P:transport;C:plasma membrane, membrane;BOMPFAV O.I. C.G. H.G.
329.0 100.0 303.8 At2g44460 819053 BGLU28 (BETA GLUCOSIDASE 28) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:membrane;BOPMFA O.I. C.G. H.G.
319.5 100.0 254.1 At5g06720 830561 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOMV O.I. C.G. H.G.
304.0 100.0 106.8 At2g02680 814797 DC1 domain-containing protein F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:intracellular;PMOF O.I. C.G. H.G.
298.8 100.0 28.1 At2g43270 818929 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
265.3 100.0 132.4 At5g61890 836310 AP2 domain-containing transcription factor family protein encodes a member of the ERF (ethylene response factor) subfamily B-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily. O.I. C.G. H.G.
259.6 100.0 123.3 At5g06730 830562 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:plasma membrane;PFOBM O.I. C.G. H.G.
251.0 100.0 194.4 At2g45130 819120 SPX3 (SPX DOMAIN GENE 3) F:molecular_function unknown;P:cellular response to phosphate starvation, positive regulation of cellular response to phosphate starvation;C:cellular_component unknown;FMPO O.I. C.G. H.G.
250.8 100.0 287.1 At3g27400 822361 pectate lyase family protein F:pectate lyase activity;P:biological_process unknown;C:endomembrane system;BPFO O.I. C.G. H.G.
236.6 100.0 69.8 At3g17110 3768803 - F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
214.8 100.0 128.6 At4g16563 827356 aspartyl protease family protein F:aspartic-type endopeptidase activity;P:proteolysis;C:plant-type cell wall;PMFO O.I. C.G. H.G.
192.0 100.0 374.6 At2g01610 814690 invertase/pectin methylesterase inhibitor family protein F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
168.0 100.0 101.8 At2g28660 817415 copper-binding family protein F:copper ion binding, metal ion binding;P:copper ion transport, metal ion transport;C:chloroplast;OPMBF O.I. C.G. H.G.
166.8 100.0 30.8 At5g03090 831803 unknown protein F:molecular_function unknown;P:response to jasmonic acid stimulus;C:cellular_component unknown;P O.I. C.G. H.G.
166.6 100.0 36.1 At4g01920 828197 DC1 domain-containing protein F:unknown;P:intracellular signaling cascade;C:cellular_component unknown;PMO O.I. C.G. H.G.
165.9 100.0 236.7 At1g19850 838573 MP (MONOPTEROS) Encodes a transcription factor (IAA24) mediating embryo axis formation and vascular development. Similar to AUXIN RESPONSIVE FACTOR 1 (ARF1) shown to bind to auxin responsive elements (AREs), and to the maize transcriptional activator VIVIPAROUS 1( VP1). In situ hybridization shows expression in provascular tissue of embryos, the emerging shoot primordia, then is restricted to provascular tissue, and in the root central vascular cylinder. O.I. C.G. H.G.
164.2 99.9 292.1 At2g28510 817399 Dof-type zinc finger domain-containing protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleolus;POMFB O.I. C.G. H.G.
159.2 99.9 65.9 At2g16580 816158 auxin-responsive protein, putative F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO O.I. C.G. H.G.
151.7 99.9 174.3 At2g47260 819339 WRKY23 member of WRKY Transcription Factor; Group I O.I. C.G. H.G.
151.1 99.9 38.7 At4g01930 828198 DC1 domain-containing protein F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;PMO O.I. C.G. H.G.
151.0 99.9 162.9 At5g24760 832545 alcohol dehydrogenase, putative F:oxidoreductase activity, binding, catalytic activity, zinc ion binding;P:oxidation reduction, metabolic process;C:chloroplast;BOPFMAV O.I. C.G. H.G.
147.7 99.9 106.0 At5g24310 832498 ABIL3 (ABL INTERACTOR-LIKE PROTEIN 3) F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFBV O.I. C.G. H.G.
143.3 99.9 45.5 At2g02020 814733 proton-dependent oligopeptide transport (POT) family protein F:transporter activity;P:oligopeptide transport;C:membrane;BPMOF O.I. C.G. H.G.
142.6 99.9 27.2 At2g38940 818479 ATPT2 (ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 2) phosphate transporter (AtPT2) O.I. C.G. H.G.
139.8 99.9 35.7 At2g02820 814812 MYB88 (myb domain protein 88) Encodes a putative transcription factor (MYB88), involved in stomata development, double loss of MYB88 and FLP (MYB124) activity results in a failure of guard mother cells (GMCs) to adopt the guard cell fate, thus they continue to divide resulting in abnormal stomata consisting of clusters of numerous guard cell-like cells. This phenotype is enhanced in double mutants over the single mutant flp phenotype. O.I. C.G. H.G.
139.5 99.9 170.1 At5g12880 831128 proline-rich family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
139.3 99.9 50.4 At3g09070 820060 glycine-rich protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MOPFBV O.I. C.G. H.G.
135.9 99.9 111.7 At3g16940 820950 calmodulin-binding protein F:transcription regulator activity, calmodulin binding;P:biological_process unknown;C:cellular_component unknown;MOPFBVA O.I. C.G. H.G.
133.2 99.9 71.3 At1g51620 841587 protein kinase family protein F:protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA O.I. C.G. H.G.
130.7 99.9 156.8 At2g20800 816609 NDB4 (NAD(P)H dehydrogenase B4) F:NADH dehydrogenase activity;P:unknown;C:extrinsic to mitochondrial inner membrane, mitochondrion, plastid;BOFPAM O.I. C.G. H.G.
127.4 99.9 194.5 At2g11810 815657 MGDC MGD3 is the major enzyme for galactolipid metabolism during phosphate starvation. Does not contribute to galactolipid synthesis under P1-sufficient conditions. O.I. C.G. H.G.
122.8 99.9 373.7 At2g42570 818857 unknown protein F:unknown;P:biological_process unknown;C:vacuole;P O.I. C.G. H.G.
120.4 99.9 271.5 At1g69880 843324 ATH8 (thioredoxin H-type 8) F:unknown;P:N-terminal protein myristoylation, cell redox homeostasis;C:cellular_component unknown;BOMPFAV O.I. C.G. H.G.
119.2 99.9 91.6 At5g60200 836142 Dof-type zinc finger domain-containing protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PO O.I. C.G. H.G.
117.2 99.9 53.3 At5g20540 832176 ATBRXL4 (BREVIS RADIX-LIKE 4) Belongs to five-member BRX gene family. Arabidopsis BRX genes share high levels of similarity among each others, with several conserved domains. The most distinct is BRX domain - highly conserved in all BRX genes among distantly related species. This protein-protein interaction domain is required and sufficient for BRX activity. O.I. C.G. H.G.
114.1 99.9 81.6 At1g25580 839145 ANAC008 (Arabidopsis NAC domain containing protein 8) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:unknown;PMFO O.I. C.G. H.G.
113.1 99.9 185.9 At5g49280 834988 hydroxyproline-rich glycoprotein family protein F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;MPFOBVA O.I. C.G. H.G.
110.8 99.9 96.4 At1g23140 838922 C2 domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MPFO O.I. C.G. H.G.
108.3 99.9 338.8 At1g73010 843632 phosphatase F:phosphatase activity;P:metabolic process;C:cellular_component unknown;MPOBF O.I. C.G. H.G.
106.9 99.9 59.2 At4g23410 828440 TET5 (TETRASPANIN5) Member of TETRASPANIN family O.I. C.G. H.G.
105.2 99.9 28.2 At5g45220 834558 Toll-Interleukin-Resistance (TIR) domain-containing protein F:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;P O.I. C.G. H.G.
103.8 99.9 52.1 At5g43980 834421 PDLP1 (PLASMODESMATA-LOCATED PROTEIN 1) Encodes a plasmodesmal protein that affects the intercellular movement of molecules through the plasmodesmata. The cytoplasmic C-terminal portion of the protein is connected to the apoplastic N-terminal portion of the protein by a single transmembrane domain (TMD). It is transported to the plasmodesmata through the secretory pathway. PDLP1 has two DUF26 domains and a signal peptide, but the proper localization of the protein appears to depend on the TMD. O.I. C.G. H.G.
102.8 99.9 50.4 At3g15990 820844 SULTR3 Encodes sulfate transporter Sultr3;4. O.I. C.G. H.G.
102.7 99.9 52.2 At4g01970 828186 AtSTS (Arabidopsis thaliana stachyose synthase) Encodes a putative stachyose synthetase. O.I. C.G. H.G.
99.7 99.9 90.5 At2g16650 816166 antiporter/ drug transporter F:drug transporter activity, antiporter activity;P:multidrug transport;C:chloroplast, membrane;PMO O.I. C.G. H.G.
98.8 99.9 168.8 At1g03820 839400 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OPFMB O.I. C.G. H.G.
98.7 99.9 89.5 At5g57100 835814 transporter-related F:unknown;P:unknown;C:membrane;PMFOB O.I. C.G. H.G.
98.6 99.9 280.7 At3g30396 3769077 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
97.7 99.9 198.6 At2g29440 817493 ATGSTU6 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 6) Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). O.I. C.G. H.G.
97.7 99.9 28.9 At1g44510 3767344 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
97.5 99.9 45.9 At5g14400 831291 CYP724A1 member of CYP724A O.I. C.G. H.G.
95.1 99.9 54.8 At4g30430 829166 TET9 (TETRASPANIN9) Member of TETRASPANIN family O.I. C.G. H.G.
94.4 99.9 67.2 At5g53830 835464 VQ motif-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFBM O.I. C.G. H.G.
93.4 99.9 53.6 At3g16980 820954 NRPB9A One of two highly similar, non-catalytic subunits common to nuclear DNA-directed RNA polymerases II, IV and V; homologous to budding yeast RPB9. Appears to be redundant with At4g16265 O.I. C.G. H.G.
92.3 99.9 141.2 At5g44240 834447 haloacid dehalogenase-like hydrolase family protein F:ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism;P:metabolic process, phospholipid transport, ATP biosynthetic process;C:integral to membrane, membrane;MBOFPAV O.I. C.G. H.G.
91.7 99.9 40.5 At4g23720 828472 unknown protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;P O.I. C.G. H.G.
91.1 99.9 39.0 At3g42725 823305 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
90.1 99.9 134.1 At5g05340 830416 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:apoplast, cell wall;PFOBM O.I. C.G. H.G.
90.1 99.9 24.1 At5g24750 832544 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BFPOVM O.I. C.G. H.G.
89.7 99.9 77.6 At1g44130 841016 nucellin protein, putative F:aspartic-type endopeptidase activity;P:proteolysis;C:plant-type cell wall;POMF O.I. C.G. H.G.
88.7 99.9 257.2 At2g10640 3767859 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
87.5 99.9 210.2 At1g69930 843329 ATGSTU11 (GLUTATHIONE S-TRANSFERASE TAU 11) Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). O.I. C.G. H.G.
87.1 99.9 169.2 At5g22460 832307 esterase/lipase/thioesterase family protein F:catalytic activity;P:biological_process unknown;C:cell wall, vacuole, plant-type cell wall;BPOF O.I. C.G. H.G.
84.2 99.9 87.0 At3g54030 824570 protein kinase family protein F:protein tyrosine kinase activity, binding, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:plasma membrane;PMBOFVA O.I. C.G. H.G.
82.9 99.9 20.2 At1g02250 839390 anac005 (Arabidopsis NAC domain containing protein 5) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P O.I. C.G. H.G.
82.6 99.9 94.9 At3g07540 819943 formin homology 2 domain-containing protein / FH2 domain-containing protein F:actin binding;P:cellular component organization, actin cytoskeleton organization;C:plasma membrane;MOPFBV O.I. C.G. H.G.
81.9 99.9 229.2 At2g12300 3768253 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
81.0 99.9 61.9 At4g13420 826973 HAK5 (HIGH AFFINITY K+ TRANSPORTER 5) Encodes a protein of the KUP/HAK/KT potassium channel class that is upregulated in the roots by K levels. O.I. C.G. H.G.
80.5 99.9 254.8 At5g46700 834713 TRN2 (TORNADO 2) Encodes a transmembrane protein of the tetraspanin (TET) family, one of 17 members found in Arabidopsis. Double mutant analysis showed that TRN1 and TRN2 act in the same pathway. Required for the maintenance of both the radial pattern of tissue differentiation in the root and for the subsequent circumferential pattern within the epidermis. O.I. C.G. H.G.
78.5 99.9 67.5 At1g23550 838965 SRO2 (SIMILAR TO RCD ONE 2) Encodes a protein with similarity to RCD1 but without the WWE domain. The protein does have a PARP signature upstream of the C-terminal protein interaction domain. The PARP signature may bind NAD+ and attach the ADP-ribose-moiety from NAD+ to the target molecule. Its presence suggests a role for the protein in ADP ribosylation. O.I. C.G. H.G.
77.7 99.9 23.1 At2g02700 814799 DC1 domain-containing protein F:protein binding, zinc ion binding;P:unknown;C:cellular_component unknown;PM O.I. C.G. H.G.
77.6 99.9 30.5 At1g52260 841656 ATPDIL1-5 (PDI-LIKE 1-5) Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. Unlike several other PDI family members, transcript levels for this gene are not up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin). O.I. C.G. H.G.
76.7 99.9 48.7 At5g43380 834356 TOPP6 encodes a type I serine/threonine protein phosphatase expressed in expressed in roots, rosettes and flowers. O.I. C.G. H.G.
76.6 99.9 46.8 At5g57130 835819 protein binding F:protein binding;P:protein metabolic process;C:cellular_component unknown;PBOAM O.I. C.G. H.G.
76.3 99.9 81.8 At1g61667 842463 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO O.I. C.G. H.G.
76.3 99.9 74.1 At5g05160 830398 leucine-rich repeat transmembrane protein kinase, putative F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:cell wall, plasma membrane;PMOBFVA O.I. C.G. H.G.
76.1 99.9 252.8 At2g27080 817250 harpin-induced protein-related / HIN1-related / harpin-responsive protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
75.7 99.9 318.5 At4g01480 827962 AtPPa5 (Arabidopsis thaliana pyrophosphorylase 5) Encodes a protein that might have inorganic pyrophosphatase activity. O.I. C.G. H.G.
75.5 99.9 105.5 At2g45210 819129 auxin-responsive protein-related F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO O.I. C.G. H.G.
75.3 99.9 68.3 At5g51480 835222 SKS2 (SKU5 SIMILAR 2) F:oxidoreductase activity, copper ion binding;P:unknown;C:anchored to plasma membrane, plasma membrane, anchored to membrane;FBPMOA O.I. C.G. H.G.
75.2 99.9 238.3 At2g12240 3768292 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
74.7 99.9 33.6 At5g46590 834702 anac096 (Arabidopsis NAC domain containing protein 96) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P O.I. C.G. H.G.
74.6 99.9 236.0 At2g04040 814938 TX1 AtDTX1 (At2g04040) has been identified as a detoxifying efflux carrier for plant-derived antibiotics and other toxic compounds, including CD2+. O.I. C.G. H.G.
72.1 99.9 43.2 At1g64450 842753 proline-rich family protein F:unknown;P:unknown;C:unknown;MBOPFVA O.I. C.G. H.G.
72.0 99.9 47.2 At3g20660 821613 AtOCT4 (Arabidopsis thaliana ORGANIC CATION/CARNITINE TRANSPORTER4) F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport;C:chloroplast thylakoid membrane, membrane;BMFPOA O.I. C.G. H.G.
71.6 99.9 52.5 At4g01410 828166 harpin-induced family protein / HIN1 family protein / harpin-responsive family protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;P O.I. C.G. H.G.
71.5 99.9 66.2 At1g15170 838083 MATE efflux family protein F:drug transporter activity, antiporter activity, transporter activity;P:multidrug transport;C:chloroplast, membrane;BOPFMA O.I. C.G. H.G.
69.7 99.9 54.6 At3g22930 821865 calmodulin, putative F:calcium ion binding;P:biological_process unknown;C:unknown;MOFPBV O.I. C.G. H.G.
69.2 99.9 36.9 At2g43140 818916 DNA binding / transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMOBF O.I. C.G. H.G.
68.3 99.9 54.3 At3g16857 820940 ARR1 (ARABIDOPSIS RESPONSE REGULATOR 1) Encodes an Arabidopsis response regulator (ARR) protein that acts in concert with other type-B ARRs in the cytokinin signaling pathway. O.I. C.G. H.G.
68.1 99.9 107.5 At2g02860 814817 SUT2 (SUCROSE TRANSPORTER 2) encodes a sucrose transporter in sieve elements and a number of sink tissues and cell types. Gene expression is induced by wounding. O.I. C.G. H.G.
66.8 99.8 293.4 At2g44450 819052 BGLU15 (BETA GLUCOSIDASE 15) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:cell wall, plant-type cell wall;BOPMFA O.I. C.G. H.G.
66.3 99.8 247.0 At2g02800 814810 APK2B (PROTEIN KINASE 2B) Encodes protein kinase APK2b. O.I. C.G. H.G.
66.2 99.8 217.7 At1g14890 838054 enzyme inhibitor/ pectinesterase/ pectinesterase inhibitor F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
738.7	100.0	108.1	At4g39320	830087	microtubule-associated protein-related	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MOFBP	O.I.	C.G.	H.G.
555.5	100.0	87.9	At5g60470	836168	nucleic acid binding / transcription factor/ zinc ion binding	F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;MOPF	O.I.	C.G.	H.G.
488.6	100.0	201.8	At1g68290	843158	ENDO 2 (endonuclease 2)	Encodes a putative endonuclease but no demonstrable endonuclease activity, either towards single stranded DNA or mismatches, has been seen in vitro.	O.I.	C.G.	H.G.
455.9	100.0	133.3	At5g50130	835078	short-chain dehydrogenase/reductase (SDR) family protein	F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPA	O.I.	C.G.	H.G.
364.6	100.0	333.9	At1g71380	843479	ATCEL3 (ARABIDOPSIS THALIANA CELLULASE 3)	F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:cell wall, plasma membrane, plant-type cell wall;PBMOF	O.I.	C.G.	H.G.
346.9	100.0	170.8	At2g25790	817121	leucine-rich repeat transmembrane protein kinase, putative	F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:plasma membrane;PMOBFAV	O.I.	C.G.	H.G.
345.2	100.0	178.2	At1g60030	842297	xanthine/uracil permease family protein	F:transmembrane transporter activity;P:transport;C:plasma membrane, membrane;BOMPFAV	O.I.	C.G.	H.G.
329.0	100.0	303.8	At2g44460	819053	BGLU28 (BETA GLUCOSIDASE 28)	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:membrane;BOPMFA	O.I.	C.G.	H.G.
319.5	100.0	254.1	At5g06720	830561	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOMV	O.I.	C.G.	H.G.
304.0	100.0	106.8	At2g02680	814797	DC1 domain-containing protein	F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:intracellular;PMOF	O.I.	C.G.	H.G.
298.8	100.0	28.1	At2g43270	818929	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
265.3	100.0	132.4	At5g61890	836310	AP2 domain-containing transcription factor family protein	encodes a member of the ERF (ethylene response factor) subfamily B-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily.	O.I.	C.G.	H.G.
259.6	100.0	123.3	At5g06730	830562	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:plasma membrane;PFOBM	O.I.	C.G.	H.G.
251.0	100.0	194.4	At2g45130	819120	SPX3 (SPX DOMAIN GENE 3)	F:molecular_function unknown;P:cellular response to phosphate starvation, positive regulation of cellular response to phosphate starvation;C:cellular_component unknown;FMPO	O.I.	C.G.	H.G.
250.8	100.0	287.1	At3g27400	822361	pectate lyase family protein	F:pectate lyase activity;P:biological_process unknown;C:endomembrane system;BPFO	O.I.	C.G.	H.G.
236.6	100.0	69.8	At3g17110	3768803	-	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
214.8	100.0	128.6	At4g16563	827356	aspartyl protease family protein	F:aspartic-type endopeptidase activity;P:proteolysis;C:plant-type cell wall;PMFO	O.I.	C.G.	H.G.
192.0	100.0	374.6	At2g01610	814690	invertase/pectin methylesterase inhibitor family protein	F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
168.0	100.0	101.8	At2g28660	817415	copper-binding family protein	F:copper ion binding, metal ion binding;P:copper ion transport, metal ion transport;C:chloroplast;OPMBF	O.I.	C.G.	H.G.
166.8	100.0	30.8	At5g03090	831803	unknown protein	F:molecular_function unknown;P:response to jasmonic acid stimulus;C:cellular_component unknown;P	O.I.	C.G.	H.G.
166.6	100.0	36.1	At4g01920	828197	DC1 domain-containing protein	F:unknown;P:intracellular signaling cascade;C:cellular_component unknown;PMO	O.I.	C.G.	H.G.
165.9	100.0	236.7	At1g19850	838573	MP (MONOPTEROS)	Encodes a transcription factor (IAA24) mediating embryo axis formation and vascular development. Similar to AUXIN RESPONSIVE FACTOR 1 (ARF1) shown to bind to auxin responsive elements (AREs), and to the maize transcriptional activator VIVIPAROUS 1( VP1). In situ hybridization shows expression in provascular tissue of embryos, the emerging shoot primordia, then is restricted to provascular tissue, and in the root central vascular cylinder.	O.I.	C.G.	H.G.
164.2	99.9	292.1	At2g28510	817399	Dof-type zinc finger domain-containing protein	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleolus;POMFB	O.I.	C.G.	H.G.
159.2	99.9	65.9	At2g16580	816158	auxin-responsive protein, putative	F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO	O.I.	C.G.	H.G.
151.7	99.9	174.3	At2g47260	819339	WRKY23	member of WRKY Transcription Factor; Group I	O.I.	C.G.	H.G.
151.1	99.9	38.7	At4g01930	828198	DC1 domain-containing protein	F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;PMO	O.I.	C.G.	H.G.
151.0	99.9	162.9	At5g24760	832545	alcohol dehydrogenase, putative	F:oxidoreductase activity, binding, catalytic activity, zinc ion binding;P:oxidation reduction, metabolic process;C:chloroplast;BOPFMAV	O.I.	C.G.	H.G.
147.7	99.9	106.0	At5g24310	832498	ABIL3 (ABL INTERACTOR-LIKE PROTEIN 3)	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFBV	O.I.	C.G.	H.G.
143.3	99.9	45.5	At2g02020	814733	proton-dependent oligopeptide transport (POT) family protein	F:transporter activity;P:oligopeptide transport;C:membrane;BPMOF	O.I.	C.G.	H.G.
142.6	99.9	27.2	At2g38940	818479	ATPT2 (ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 2)	phosphate transporter (AtPT2)	O.I.	C.G.	H.G.
139.8	99.9	35.7	At2g02820	814812	MYB88 (myb domain protein 88)	Encodes a putative transcription factor (MYB88), involved in stomata development, double loss of MYB88 and FLP (MYB124) activity results in a failure of guard mother cells (GMCs) to adopt the guard cell fate, thus they continue to divide resulting in abnormal stomata consisting of clusters of numerous guard cell-like cells. This phenotype is enhanced in double mutants over the single mutant flp phenotype.	O.I.	C.G.	H.G.
139.5	99.9	170.1	At5g12880	831128	proline-rich family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
139.3	99.9	50.4	At3g09070	820060	glycine-rich protein	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MOPFBV	O.I.	C.G.	H.G.
135.9	99.9	111.7	At3g16940	820950	calmodulin-binding protein	F:transcription regulator activity, calmodulin binding;P:biological_process unknown;C:cellular_component unknown;MOPFBVA	O.I.	C.G.	H.G.
133.2	99.9	71.3	At1g51620	841587	protein kinase family protein	F:protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA	O.I.	C.G.	H.G.
130.7	99.9	156.8	At2g20800	816609	NDB4 (NAD(P)H dehydrogenase B4)	F:NADH dehydrogenase activity;P:unknown;C:extrinsic to mitochondrial inner membrane, mitochondrion, plastid;BOFPAM	O.I.	C.G.	H.G.
127.4	99.9	194.5	At2g11810	815657	MGDC	MGD3 is the major enzyme for galactolipid metabolism during phosphate starvation. Does not contribute to galactolipid synthesis under P1-sufficient conditions.	O.I.	C.G.	H.G.
122.8	99.9	373.7	At2g42570	818857	unknown protein	F:unknown;P:biological_process unknown;C:vacuole;P	O.I.	C.G.	H.G.
120.4	99.9	271.5	At1g69880	843324	ATH8 (thioredoxin H-type 8)	F:unknown;P:N-terminal protein myristoylation, cell redox homeostasis;C:cellular_component unknown;BOMPFAV	O.I.	C.G.	H.G.
119.2	99.9	91.6	At5g60200	836142	Dof-type zinc finger domain-containing protein	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PO	O.I.	C.G.	H.G.
117.2	99.9	53.3	At5g20540	832176	ATBRXL4 (BREVIS RADIX-LIKE 4)	Belongs to five-member BRX gene family. Arabidopsis BRX genes share high levels of similarity among each others, with several conserved domains. The most distinct is BRX domain - highly conserved in all BRX genes among distantly related species. This protein-protein interaction domain is required and sufficient for BRX activity.	O.I.	C.G.	H.G.
114.1	99.9	81.6	At1g25580	839145	ANAC008 (Arabidopsis NAC domain containing protein 8)	F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:unknown;PMFO	O.I.	C.G.	H.G.
113.1	99.9	185.9	At5g49280	834988	hydroxyproline-rich glycoprotein family protein	F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;MPFOBVA	O.I.	C.G.	H.G.
110.8	99.9	96.4	At1g23140	838922	C2 domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MPFO	O.I.	C.G.	H.G.
108.3	99.9	338.8	At1g73010	843632	phosphatase	F:phosphatase activity;P:metabolic process;C:cellular_component unknown;MPOBF	O.I.	C.G.	H.G.
106.9	99.9	59.2	At4g23410	828440	TET5 (TETRASPANIN5)	Member of TETRASPANIN family	O.I.	C.G.	H.G.
105.2	99.9	28.2	At5g45220	834558	Toll-Interleukin-Resistance (TIR) domain-containing protein	F:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;P	O.I.	C.G.	H.G.
103.8	99.9	52.1	At5g43980	834421	PDLP1 (PLASMODESMATA-LOCATED PROTEIN 1)	Encodes a plasmodesmal protein that affects the intercellular movement of molecules through the plasmodesmata. The cytoplasmic C-terminal portion of the protein is connected to the apoplastic N-terminal portion of the protein by a single transmembrane domain (TMD). It is transported to the plasmodesmata through the secretory pathway. PDLP1 has two DUF26 domains and a signal peptide, but the proper localization of the protein appears to depend on the TMD.	O.I.	C.G.	H.G.
102.8	99.9	50.4	At3g15990	820844	SULTR3	Encodes sulfate transporter Sultr3;4.	O.I.	C.G.	H.G.
102.7	99.9	52.2	At4g01970	828186	AtSTS (Arabidopsis thaliana stachyose synthase)	Encodes a putative stachyose synthetase.	O.I.	C.G.	H.G.
99.7	99.9	90.5	At2g16650	816166	antiporter/ drug transporter	F:drug transporter activity, antiporter activity;P:multidrug transport;C:chloroplast, membrane;PMO	O.I.	C.G.	H.G.
98.8	99.9	168.8	At1g03820	839400	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OPFMB	O.I.	C.G.	H.G.
98.7	99.9	89.5	At5g57100	835814	transporter-related	F:unknown;P:unknown;C:membrane;PMFOB	O.I.	C.G.	H.G.
98.6	99.9	280.7	At3g30396	3769077	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
97.7	99.9	198.6	At2g29440	817493	ATGSTU6 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 6)	Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).	O.I.	C.G.	H.G.
97.7	99.9	28.9	At1g44510	3767344	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
97.5	99.9	45.9	At5g14400	831291	CYP724A1	member of CYP724A	O.I.	C.G.	H.G.
95.1	99.9	54.8	At4g30430	829166	TET9 (TETRASPANIN9)	Member of TETRASPANIN family	O.I.	C.G.	H.G.
94.4	99.9	67.2	At5g53830	835464	VQ motif-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFBM	O.I.	C.G.	H.G.
93.4	99.9	53.6	At3g16980	820954	NRPB9A	One of two highly similar, non-catalytic subunits common to nuclear DNA-directed RNA polymerases II, IV and V; homologous to budding yeast RPB9. Appears to be redundant with At4g16265	O.I.	C.G.	H.G.
92.3	99.9	141.2	At5g44240	834447	haloacid dehalogenase-like hydrolase family protein	F:ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism;P:metabolic process, phospholipid transport, ATP biosynthetic process;C:integral to membrane, membrane;MBOFPAV	O.I.	C.G.	H.G.
91.7	99.9	40.5	At4g23720	828472	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;P	O.I.	C.G.	H.G.
91.1	99.9	39.0	At3g42725	823305	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
90.1	99.9	134.1	At5g05340	830416	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:apoplast, cell wall;PFOBM	O.I.	C.G.	H.G.
90.1	99.9	24.1	At5g24750	832544	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BFPOVM	O.I.	C.G.	H.G.
89.7	99.9	77.6	At1g44130	841016	nucellin protein, putative	F:aspartic-type endopeptidase activity;P:proteolysis;C:plant-type cell wall;POMF	O.I.	C.G.	H.G.
88.7	99.9	257.2	At2g10640	3767859	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
87.5	99.9	210.2	At1g69930	843329	ATGSTU11 (GLUTATHIONE S-TRANSFERASE TAU 11)	Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).	O.I.	C.G.	H.G.
87.1	99.9	169.2	At5g22460	832307	esterase/lipase/thioesterase family protein	F:catalytic activity;P:biological_process unknown;C:cell wall, vacuole, plant-type cell wall;BPOF	O.I.	C.G.	H.G.
84.2	99.9	87.0	At3g54030	824570	protein kinase family protein	F:protein tyrosine kinase activity, binding, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:plasma membrane;PMBOFVA	O.I.	C.G.	H.G.
82.9	99.9	20.2	At1g02250	839390	anac005 (Arabidopsis NAC domain containing protein 5)	F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P	O.I.	C.G.	H.G.
82.6	99.9	94.9	At3g07540	819943	formin homology 2 domain-containing protein / FH2 domain-containing protein	F:actin binding;P:cellular component organization, actin cytoskeleton organization;C:plasma membrane;MOPFBV	O.I.	C.G.	H.G.
81.9	99.9	229.2	At2g12300	3768253	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
81.0	99.9	61.9	At4g13420	826973	HAK5 (HIGH AFFINITY K+ TRANSPORTER 5)	Encodes a protein of the KUP/HAK/KT potassium channel class that is upregulated in the roots by K levels.	O.I.	C.G.	H.G.
80.5	99.9	254.8	At5g46700	834713	TRN2 (TORNADO 2)	Encodes a transmembrane protein of the tetraspanin (TET) family, one of 17 members found in Arabidopsis. Double mutant analysis showed that TRN1 and TRN2 act in the same pathway. Required for the maintenance of both the radial pattern of tissue differentiation in the root and for the subsequent circumferential pattern within the epidermis.	O.I.	C.G.	H.G.
78.5	99.9	67.5	At1g23550	838965	SRO2 (SIMILAR TO RCD ONE 2)	Encodes a protein with similarity to RCD1 but without the WWE domain. The protein does have a PARP signature upstream of the C-terminal protein interaction domain. The PARP signature may bind NAD+ and attach the ADP-ribose-moiety from NAD+ to the target molecule. Its presence suggests a role for the protein in ADP ribosylation.	O.I.	C.G.	H.G.
77.7	99.9	23.1	At2g02700	814799	DC1 domain-containing protein	F:protein binding, zinc ion binding;P:unknown;C:cellular_component unknown;PM	O.I.	C.G.	H.G.
77.6	99.9	30.5	At1g52260	841656	ATPDIL1-5 (PDI-LIKE 1-5)	Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. Unlike several other PDI family members, transcript levels for this gene are not up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin).	O.I.	C.G.	H.G.
76.7	99.9	48.7	At5g43380	834356	TOPP6	encodes a type I serine/threonine protein phosphatase expressed in expressed in roots, rosettes and flowers.	O.I.	C.G.	H.G.
76.6	99.9	46.8	At5g57130	835819	protein binding	F:protein binding;P:protein metabolic process;C:cellular_component unknown;PBOAM	O.I.	C.G.	H.G.
76.3	99.9	81.8	At1g61667	842463	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO	O.I.	C.G.	H.G.
76.3	99.9	74.1	At5g05160	830398	leucine-rich repeat transmembrane protein kinase, putative	F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:cell wall, plasma membrane;PMOBFVA	O.I.	C.G.	H.G.
76.1	99.9	252.8	At2g27080	817250	harpin-induced protein-related / HIN1-related / harpin-responsive protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
75.7	99.9	318.5	At4g01480	827962	AtPPa5 (Arabidopsis thaliana pyrophosphorylase 5)	Encodes a protein that might have inorganic pyrophosphatase activity.	O.I.	C.G.	H.G.
75.5	99.9	105.5	At2g45210	819129	auxin-responsive protein-related	F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO	O.I.	C.G.	H.G.
75.3	99.9	68.3	At5g51480	835222	SKS2 (SKU5 SIMILAR 2)	F:oxidoreductase activity, copper ion binding;P:unknown;C:anchored to plasma membrane, plasma membrane, anchored to membrane;FBPMOA	O.I.	C.G.	H.G.
75.2	99.9	238.3	At2g12240	3768292	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
74.7	99.9	33.6	At5g46590	834702	anac096 (Arabidopsis NAC domain containing protein 96)	F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P	O.I.	C.G.	H.G.
74.6	99.9	236.0	At2g04040	814938	TX1	AtDTX1 (At2g04040) has been identified as a detoxifying efflux carrier for plant-derived antibiotics and other toxic compounds, including CD2+.	O.I.	C.G.	H.G.
72.1	99.9	43.2	At1g64450	842753	proline-rich family protein	F:unknown;P:unknown;C:unknown;MBOPFVA	O.I.	C.G.	H.G.
72.0	99.9	47.2	At3g20660	821613	AtOCT4 (Arabidopsis thaliana ORGANIC CATION/CARNITINE TRANSPORTER4)	F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport;C:chloroplast thylakoid membrane, membrane;BMFPOA	O.I.	C.G.	H.G.
71.6	99.9	52.5	At4g01410	828166	harpin-induced family protein / HIN1 family protein / harpin-responsive family protein	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;P	O.I.	C.G.	H.G.
71.5	99.9	66.2	At1g15170	838083	MATE efflux family protein	F:drug transporter activity, antiporter activity, transporter activity;P:multidrug transport;C:chloroplast, membrane;BOPFMA	O.I.	C.G.	H.G.
69.7	99.9	54.6	At3g22930	821865	calmodulin, putative	F:calcium ion binding;P:biological_process unknown;C:unknown;MOFPBV	O.I.	C.G.	H.G.
69.2	99.9	36.9	At2g43140	818916	DNA binding / transcription factor	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMOBF	O.I.	C.G.	H.G.
68.3	99.9	54.3	At3g16857	820940	ARR1 (ARABIDOPSIS RESPONSE REGULATOR 1)	Encodes an Arabidopsis response regulator (ARR) protein that acts in concert with other type-B ARRs in the cytokinin signaling pathway.	O.I.	C.G.	H.G.
68.1	99.9	107.5	At2g02860	814817	SUT2 (SUCROSE TRANSPORTER 2)	encodes a sucrose transporter in sieve elements and a number of sink tissues and cell types. Gene expression is induced by wounding.	O.I.	C.G.	H.G.
66.8	99.8	293.4	At2g44450	819052	BGLU15 (BETA GLUCOSIDASE 15)	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:cell wall, plant-type cell wall;BOPMFA	O.I.	C.G.	H.G.
66.3	99.8	247.0	At2g02800	814810	APK2B (PROTEIN KINASE 2B)	Encodes protein kinase APK2b.	O.I.	C.G.	H.G.
66.2	99.8	217.7	At1g14890	838054	enzyme inhibitor/ pectinesterase/ pectinesterase inhibitor	F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.

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GSM ID	GSM134208
Assay name	Murray_3-4_D7-GROWTH_Rep1_ATH1
GSE experiment	GSE5750: Growth of suspension-cultured cells

Microarray experiments to specifically-expressed genes

GSM ID GSM134208 Assay name Murray_3-4_D7-GROWTH_Rep1_ATH1 GSE experiment GSE5750: Growth of suspension-cultured cells

GSM ID GSM134208

Assay name Murray_3-4_D7-GROWTH_Rep1_ATH1

GSE experiment GSE5750: Growth of suspension-cultured cells