CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM134204

Assay name Murray_3-2_D3-GROWTH_Rep1_ATH1

GSE experiment GSE5750: Growth of suspension-cultured cells

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
169.4 100.0 49.5 At2g02020 814733 proton-dependent oligopeptide transport (POT) family protein F:transporter activity;P:oligopeptide transport;C:membrane;BPMOF O.I. C.G. H.G.
155.0 99.9 96.7 At1g51380 841562 eukaryotic translation initiation factor 4A, putative / eIF-4A, putative F:helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding;P:unknown;C:cellular_component unknown;BOMFPAV O.I. C.G. H.G.
152.2 99.9 223.6 At3g27400 822361 pectate lyase family protein F:pectate lyase activity;P:biological_process unknown;C:endomembrane system;BPFO O.I. C.G. H.G.
149.9 99.9 67.8 At3g16980 820954 NRPB9A One of two highly similar, non-catalytic subunits common to nuclear DNA-directed RNA polymerases II, IV and V; homologous to budding yeast RPB9. Appears to be redundant with At4g16265 O.I. C.G. H.G.
148.8 99.9 36.1 At4g35370 829690 nucleotide binding F:nucleotide binding;P:biological_process unknown;C:cellular_component unknown;MFOBPA O.I. C.G. H.G.
147.2 99.9 19.7 At2g43270 818929 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
146.1 99.9 211.4 At1g71380 843479 ATCEL3 (ARABIDOPSIS THALIANA CELLULASE 3) F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:cell wall, plasma membrane, plant-type cell wall;PBMOF O.I. C.G. H.G.
137.6 99.9 317.1 At2g01610 814690 invertase/pectin methylesterase inhibitor family protein F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
136.2 99.9 60.2 At4g01970 828186 AtSTS (Arabidopsis thaliana stachyose synthase) Encodes a putative stachyose synthetase. O.I. C.G. H.G.
127.5 99.9 149.6 At1g36240 840530 60S ribosomal protein L30 (RPL30A) F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit;MOAFPB O.I. C.G. H.G.
123.9 99.9 146.5 At1g33940 840291 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO O.I. C.G. H.G.
120.6 99.9 43.7 At4g39320 830087 microtubule-associated protein-related F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MOFBP O.I. C.G. H.G.
118.7 99.9 53.6 At5g20540 832176 ATBRXL4 (BREVIS RADIX-LIKE 4) Belongs to five-member BRX gene family. Arabidopsis BRX genes share high levels of similarity among each others, with several conserved domains. The most distinct is BRX domain - highly conserved in all BRX genes among distantly related species. This protein-protein interaction domain is required and sufficient for BRX activity. O.I. C.G. H.G.
110.4 99.9 42.9 At3g42725 823305 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
107.0 99.9 64.7 At1g36180 840522 ACC2 (ACETYL-COA CARBOXYLASE 2) acetyl-CoA carboxylase 2 (ACC2) O.I. C.G. H.G.
98.4 99.9 42.6 At2g45280 819136 ATRAD51C Encodes a protein similar to RAD51C involved in double stranded break repair via homologous recombination. Sensitive to DSB induced by Mitomycin C and gamma irradiation, interacts with Atxrcc3 in yeast two-hybrid assay. Required for female meiosis but not critical for mitosis under normal conditions. O.I. C.G. H.G.
97.1 99.9 41.5 At2g07140 815283 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
93.0 99.9 92.5 At1g60030 842297 xanthine/uracil permease family protein F:transmembrane transporter activity;P:transport;C:plasma membrane, membrane;BOMPFAV O.I. C.G. H.G.
92.6 99.9 163.4 At1g03820 839400 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OPFMB O.I. C.G. H.G.
82.3 99.9 55.6 At2g02680 814797 DC1 domain-containing protein F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:intracellular;PMOF O.I. C.G. H.G.
81.0 99.9 17.5 At3g16890 820944 PPR40 (PENTATRICOPEPTIDE (PPR) DOMAIN PROTEIN 40) Encodes a mitochondrial pentatricopeptide repeat (PPR) domain protein, PPR40, which provides a signalling link between mitochondrial electron transport and regulation of stress and hormonal responses. Mutations in PPR40 result in enhanced sensitivity to salt, ABA and oxidative stress, as well as reduced electron transport through Complex III (cytochrome c reductase). O.I. C.G. H.G.
80.2 99.9 32.6 At5g07570 830650 glycine/proline-rich protein F:unknown;P:unknown;C:endomembrane system;MBOFPVA O.I. C.G. H.G.
79.4 99.9 225.6 At2g12300 3768253 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
78.2 99.9 133.7 At2g16570 816156 ATASE1 (GLN PHOSPHORIBOSYL PYROPHOSPHATE AMIDOTRANSFERASE 1) Amidophosphoribosyltransferase (ATase: EC 2.4.2.14) is a key enzyme in the pathway of purine nucleotide biosynthesis O.I. C.G. H.G.
77.9 99.9 84.4 At5g13840 831230 FZR3 (FIZZY-RELATED 3) F:signal transducer activity;P:signal transduction;C:chloroplast, heterotrimeric G-protein complex;MFBOPA O.I. C.G. H.G.
76.1 99.9 29.1 At1g34355 840337 forkhead-associated domain-containing protein / FHA domain-containing protein F:unknown;P:biological_process unknown;C:cellular_component unknown;MBOFPAV O.I. C.G. H.G.
74.6 99.9 27.2 At4g01930 828198 DC1 domain-containing protein F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;PMO O.I. C.G. H.G.
73.5 99.9 67.5 At5g51480 835222 SKS2 (SKU5 SIMILAR 2) F:oxidoreductase activity, copper ion binding;P:unknown;C:anchored to plasma membrane, plasma membrane, anchored to membrane;FBPMOA O.I. C.G. H.G.
73.2 99.9 235.0 At2g12240 3768292 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
72.9 99.9 241.4 At3g30396 3769077 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
70.9 99.9 9.1 At4g00960 827937 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
70.7 99.9 22.1 At2g45930 819201 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P O.I. C.G. H.G.
70.6 99.9 70.5 At5g60200 836142 Dof-type zinc finger domain-containing protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PO O.I. C.G. H.G.
70.4 99.9 60.4 At1g66620 842980 seven in absentia (SINA) protein, putative F:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:multicellular organismal development, protein ubiquitination, ubiquitin-dependent protein catabolic process;C:nucleus;MOFPBVA O.I. C.G. H.G.
69.6 99.9 42.6 At5g43980 834421 PDLP1 (PLASMODESMATA-LOCATED PROTEIN 1) Encodes a plasmodesmal protein that affects the intercellular movement of molecules through the plasmodesmata. The cytoplasmic C-terminal portion of the protein is connected to the apoplastic N-terminal portion of the protein by a single transmembrane domain (TMD). It is transported to the plasmodesmata through the secretory pathway. PDLP1 has two DUF26 domains and a signal peptide, but the proper localization of the protein appears to depend on the TMD. O.I. C.G. H.G.
68.6 99.9 95.7 At1g68360 843165 zinc finger protein-related F:transcription factor activity;P:regulation of transcription;C:intracellular;PMO O.I. C.G. H.G.
68.5 99.9 25.0 At2g02820 814812 MYB88 (myb domain protein 88) Encodes a putative transcription factor (MYB88), involved in stomata development, double loss of MYB88 and FLP (MYB124) activity results in a failure of guard mother cells (GMCs) to adopt the guard cell fate, thus they continue to divide resulting in abnormal stomata consisting of clusters of numerous guard cell-like cells. This phenotype is enhanced in double mutants over the single mutant flp phenotype. O.I. C.G. H.G.
67.8 99.9 157.2 At2g04000 814926 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
65.3 99.8 141.3 At5g49280 834988 hydroxyproline-rich glycoprotein family protein F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;MPFOBVA O.I. C.G. H.G.
64.1 99.8 68.7 At2g01640 814693 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POF O.I. C.G. H.G.
63.1 99.8 71.1 At2g42710 818871 ribosomal protein L1 family protein F:structural constituent of ribosome, RNA binding;P:translation, RNA processing;C:ribosome, intracellular, large ribosomal subunit;BOMFPAV O.I. C.G. H.G.
62.6 99.8 147.1 At1g15440 838115 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;MFOBPA O.I. C.G. H.G.
62.5 99.8 54.7 At5g53830 835464 VQ motif-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFBM O.I. C.G. H.G.
62.4 99.8 215.7 At2g10640 3767859 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
62.0 99.8 42.9 At4g01860 827918 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;MBFOPA O.I. C.G. H.G.
61.5 99.8 50.6 At5g40150 834012 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOB O.I. C.G. H.G.
60.8 99.8 27.9 At3g61340 825306 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
60.5 99.8 70.5 At2g16650 816166 antiporter/ drug transporter F:drug transporter activity, antiporter activity;P:multidrug transport;C:chloroplast, membrane;PMO O.I. C.G. H.G.
60.0 99.8 53.2 At2g15790 816074 SQN (SQUINT) SQN encodes the Arabidopsis homolog of cyclophilin 40 (CyP40). It is specifically required for the vegetative but not the reproductive maturation of the shoot. O.I. C.G. H.G.
59.9 99.8 21.6 At4g01920 828197 DC1 domain-containing protein F:unknown;P:intracellular signaling cascade;C:cellular_component unknown;PMO O.I. C.G. H.G.
58.9 99.8 41.0 At5g57130 835819 protein binding F:protein binding;P:protein metabolic process;C:cellular_component unknown;PBOAM O.I. C.G. H.G.
58.7 99.8 83.8 At2g03780 814905 translin family protein F:sequence-specific DNA binding, DNA binding;P:biological_process unknown;C:unknown;MFAOP O.I. C.G. H.G.
57.9 99.8 26.7 At5g25290 832601 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
57.0 99.8 88.4 At2g03800 814906 GEK1 (GEKO1) encodes a D-aminoacyl-tRNA deacylase. Involved in detoxification of D-aminoacyl-tRNA. Mutants also show ethanol-hypersensitive phenotype. O.I. C.G. H.G.
56.7 99.8 37.3 At3g30160 822707 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
56.5 99.8 159.9 At1g52150 841645 ATHB-15 Member of the class III HD-ZIP protein family. Contains homeodomain and leucine zipper domain. Critical for vascular development and negatively regulates vascular cell differentiation. O.I. C.G. H.G.
56.0 99.8 100.1 At1g69770 843313 CMT3 (chromomethylase 3) Encodes a chromomethylase involved in methylating cytosine residues at non-CG sites. Involved in preferentially methylating transposon-related sequences, reducing their mobility. CMT3 interacts with an Arabidopsis homologue of HP1 (heterochromatin protein 1), which in turn interacts with methylated histones. Involved in gene silencing. O.I. C.G. H.G.
55.6 99.8 56.5 At1g23890 839000 NHL repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BOMAP O.I. C.G. H.G.
55.3 99.8 136.7 At1g15420 838113 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBV O.I. C.G. H.G.
54.9 99.8 104.8 At2g47260 819339 WRKY23 member of WRKY Transcription Factor; Group I O.I. C.G. H.G.
54.8 99.8 66.7 At5g57100 835814 transporter-related F:unknown;P:unknown;C:membrane;PMFOB O.I. C.G. H.G.
54.3 99.8 19.3 At3g30360 822737 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
53.8 99.8 100.6 At2g20800 816609 NDB4 (NAD(P)H dehydrogenase B4) F:NADH dehydrogenase activity;P:unknown;C:extrinsic to mitochondrial inner membrane, mitochondrion, plastid;BOFPAM O.I. C.G. H.G.
53.6 99.8 42.4 At4g00930 827980 CIP4.1 Encodes COP1-interacting protein CIP4.1. O.I. C.G. H.G.
53.4 99.8 129.8 At5g25190 832590 ethylene-responsive element-binding protein, putative encodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11. O.I. C.G. H.G.
53.3 99.8 111.4 At2g02090 814740 ETL1 F:helicase activity, DNA binding, ATP binding, nucleic acid binding;P:unknown;C:chloroplast;BMOFPVA O.I. C.G. H.G.
52.8 99.8 26.8 At1g07880 837303 ATMPK13 member of MAP Kinase O.I. C.G. H.G.
52.1 99.8 36.5 At5g25800 832649 exonuclease family protein F:exonuclease activity, nucleic acid binding;P:unknown;C:intracellular;MFOPBV O.I. C.G. H.G.
51.9 99.8 58.3 At3g11520 820325 CYCB1 Encodes a B-type mitotic cyclin. O.I. C.G. H.G.
51.9 99.8 42.4 At1g51450 841570 SPla/RYanodine receptor (SPRY) domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVA O.I. C.G. H.G.
51.4 99.8 30.3 At4g23720 828472 unknown protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;P O.I. C.G. H.G.
50.6 99.8 11.7 At1g60020 3767574 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
49.5 99.8 16.8 At5g03090 831803 unknown protein F:molecular_function unknown;P:response to jasmonic acid stimulus;C:cellular_component unknown;P O.I. C.G. H.G.
49.4 99.8 203.8 At2g27080 817250 harpin-induced protein-related / HIN1-related / harpin-responsive protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
49.4 99.8 20.6 At1g44510 3767344 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
49.3 99.8 35.5 At3g17030 820959 - F:unknown;P:biological_process unknown;C:cellular_component unknown;PM O.I. C.G. H.G.
49.1 99.8 159.7 At2g28510 817399 Dof-type zinc finger domain-containing protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleolus;POMFB O.I. C.G. H.G.
48.8 99.8 61.4 At1g52160 841647 TRZ3 (TRNASE Z 3) Encodes a tRNase Z. O.I. C.G. H.G.
48.0 99.8 54.4 At2g28660 817415 copper-binding family protein F:copper ion binding, metal ion binding;P:copper ion transport, metal ion transport;C:chloroplast;OPMBF O.I. C.G. H.G.
47.9 99.8 30.6 At2g45460 819154 forkhead-associated domain-containing protein / FHA domain-containing protein F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:chloroplast;MOBFPAV O.I. C.G. H.G.
47.6 99.8 116.7 At4g12110 826819 SMO1-1 (STEROL-4ALPHA-METHYL OXIDASE 1-1) Encodes a member of the SMO1 family of sterol 4alpha-methyl oxidases. More specifically functions as a 4,4-dimethyl-9beta,19-cyclopropylsterol-4alpha- methyl oxidase. O.I. C.G. H.G.
47.6 99.8 106.2 At5g42970 834312 COP8 (CONSTITUTIVE PHOTOMORPHOGENIC 8) encodes subunit 4 of COP9 signalosome complex. sequence is similar to a subunit of the 19S regulatory particle of the 26S proteasome. recessive mutation causes derepression of photomorphogenesis. O.I. C.G. H.G.
47.3 99.8 59.1 At3g16870 820942 zinc finger (GATA type) family protein F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus;FPMO O.I. C.G. H.G.
47.1 99.8 51.3 At2g47680 819381 zinc finger (CCCH type) helicase family protein F:helicase activity, zinc ion binding, nucleic acid binding, ATP binding;P:nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;C:chloroplast;MBOFPV O.I. C.G. H.G.
45.9 99.8 78.3 At3g32900 823050 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
45.7 99.8 27.4 At2g25320 817070 - F:unknown;P:unknown;C:chloroplast;MOBFPAV O.I. C.G. H.G.
45.5 99.8 53.9 At5g48450 834900 sks3 (SKU5 Similar 3) Encodes a protein with two DUF26 domains and a signal peptide for secretion. The protein is transported to the apoplast when it is expressed as a GFP fusion protein. O.I. C.G. H.G.
44.9 99.8 51.2 At1g51580 841583 KH domain-containing protein F:RNA binding, nucleic acid binding;P:unknown;C:unknown;MPFOBVA O.I. C.G. H.G.
44.8 99.8 107.9 At3g16810 820934 APUM24 (Arabidopsis Pumilio 24) F:RNA binding, binding;P:unknown;C:nucleolus;MFPOB O.I. C.G. H.G.
43.9 99.8 223.5 At2g42570 818857 unknown protein F:unknown;P:biological_process unknown;C:vacuole;P O.I. C.G. H.G.
43.5 99.8 52.1 At2g07690 815415 minichromosome maintenance family protein / MCM family protein Member of the minichromosome maintenance complex, involved in DNA replication initiation. Abundant in proliferating and endocycling tissues. Localized in the nucleus during G1, S and G2 phases of the cell cycle, and are released into the cytoplasmic compartment during mitosis. Binds chromatin. O.I. C.G. H.G.
43.0 99.8 132.4 At2g45440 819152 DHDPS2 (DIHYDRODIPICOLINATE SYNTHASE) Encodes a protein that likely has dihydropicolinate synthase activity based on its mutant phenotype of decreased lysine levels and increased aspartate levels. The mutant also has increased levels of threonine. The enzyme is predicted to localize to the chloroplast. O.I. C.G. H.G.
42.9 99.8 27.1 At1g20270 838615 oxidoreductase, 2OG-Fe(II) oxygenase family protein F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity, iron ion binding;P:protein metabolic process, peptidyl-proline hydroxylation to 4-hydroxy-L-proline;C:unknown;MOPBFV O.I. C.G. H.G.
42.5 99.8 108.2 At5g26220 832691 ChaC-like family protein F:molecular_function unknown;P:response to lead ion, response to cadmium ion;C:cellular_component unknown;BMOFP O.I. C.G. H.G.
42.4 99.8 15.3 At1g45100 841077 polyadenylate-binding protein, putative / PABP, putative F:RNA binding, nucleotide binding, nucleic acid binding;P:unknown;C:unknown;MFPOB O.I. C.G. H.G.
41.9 99.8 23.8 At2g16450 816143 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
41.5 99.8 45.8 At1g26340 839176 CB5-A (CYTOCHROME B5 ISOFORM A) encodes a member of the cytochromes b5 family of proteins that localizes to the outer envelope of the chloroplast. The C-terminal portion of the protein appears to be capable of inserting into a plant microsomal membrane in vitro. O.I. C.G. H.G.
41.1 99.8 22.8 At2g15630 816056 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBA O.I. C.G. H.G.
40.7 99.8 16.2 At5g24750 832544 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BFPOVM O.I. C.G. H.G.
40.5 99.8 79.7 At2g16440 816142 DNA replication licensing factor, putative F:nucleoside-triphosphatase activity, DNA-dependent ATPase activity, DNA binding, nucleotide binding, ATP binding;P:DNA replication initiation, DNA replication;C:nucleus, chloroplast;MOFPBAV O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
169.4	100.0	49.5	At2g02020	814733	proton-dependent oligopeptide transport (POT) family protein	F:transporter activity;P:oligopeptide transport;C:membrane;BPMOF	O.I.	C.G.	H.G.
155.0	99.9	96.7	At1g51380	841562	eukaryotic translation initiation factor 4A, putative / eIF-4A, putative	F:helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding;P:unknown;C:cellular_component unknown;BOMFPAV	O.I.	C.G.	H.G.
152.2	99.9	223.6	At3g27400	822361	pectate lyase family protein	F:pectate lyase activity;P:biological_process unknown;C:endomembrane system;BPFO	O.I.	C.G.	H.G.
149.9	99.9	67.8	At3g16980	820954	NRPB9A	One of two highly similar, non-catalytic subunits common to nuclear DNA-directed RNA polymerases II, IV and V; homologous to budding yeast RPB9. Appears to be redundant with At4g16265	O.I.	C.G.	H.G.
148.8	99.9	36.1	At4g35370	829690	nucleotide binding	F:nucleotide binding;P:biological_process unknown;C:cellular_component unknown;MFOBPA	O.I.	C.G.	H.G.
147.2	99.9	19.7	At2g43270	818929	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
146.1	99.9	211.4	At1g71380	843479	ATCEL3 (ARABIDOPSIS THALIANA CELLULASE 3)	F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:cell wall, plasma membrane, plant-type cell wall;PBMOF	O.I.	C.G.	H.G.
137.6	99.9	317.1	At2g01610	814690	invertase/pectin methylesterase inhibitor family protein	F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
136.2	99.9	60.2	At4g01970	828186	AtSTS (Arabidopsis thaliana stachyose synthase)	Encodes a putative stachyose synthetase.	O.I.	C.G.	H.G.
127.5	99.9	149.6	At1g36240	840530	60S ribosomal protein L30 (RPL30A)	F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit;MOAFPB	O.I.	C.G.	H.G.
123.9	99.9	146.5	At1g33940	840291	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO	O.I.	C.G.	H.G.
120.6	99.9	43.7	At4g39320	830087	microtubule-associated protein-related	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MOFBP	O.I.	C.G.	H.G.
118.7	99.9	53.6	At5g20540	832176	ATBRXL4 (BREVIS RADIX-LIKE 4)	Belongs to five-member BRX gene family. Arabidopsis BRX genes share high levels of similarity among each others, with several conserved domains. The most distinct is BRX domain - highly conserved in all BRX genes among distantly related species. This protein-protein interaction domain is required and sufficient for BRX activity.	O.I.	C.G.	H.G.
110.4	99.9	42.9	At3g42725	823305	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
107.0	99.9	64.7	At1g36180	840522	ACC2 (ACETYL-COA CARBOXYLASE 2)	acetyl-CoA carboxylase 2 (ACC2)	O.I.	C.G.	H.G.
98.4	99.9	42.6	At2g45280	819136	ATRAD51C	Encodes a protein similar to RAD51C involved in double stranded break repair via homologous recombination. Sensitive to DSB induced by Mitomycin C and gamma irradiation, interacts with Atxrcc3 in yeast two-hybrid assay. Required for female meiosis but not critical for mitosis under normal conditions.	O.I.	C.G.	H.G.
97.1	99.9	41.5	At2g07140	815283	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
93.0	99.9	92.5	At1g60030	842297	xanthine/uracil permease family protein	F:transmembrane transporter activity;P:transport;C:plasma membrane, membrane;BOMPFAV	O.I.	C.G.	H.G.
92.6	99.9	163.4	At1g03820	839400	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OPFMB	O.I.	C.G.	H.G.
82.3	99.9	55.6	At2g02680	814797	DC1 domain-containing protein	F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:intracellular;PMOF	O.I.	C.G.	H.G.
81.0	99.9	17.5	At3g16890	820944	PPR40 (PENTATRICOPEPTIDE (PPR) DOMAIN PROTEIN 40)	Encodes a mitochondrial pentatricopeptide repeat (PPR) domain protein, PPR40, which provides a signalling link between mitochondrial electron transport and regulation of stress and hormonal responses. Mutations in PPR40 result in enhanced sensitivity to salt, ABA and oxidative stress, as well as reduced electron transport through Complex III (cytochrome c reductase).	O.I.	C.G.	H.G.
80.2	99.9	32.6	At5g07570	830650	glycine/proline-rich protein	F:unknown;P:unknown;C:endomembrane system;MBOFPVA	O.I.	C.G.	H.G.
79.4	99.9	225.6	At2g12300	3768253	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
78.2	99.9	133.7	At2g16570	816156	ATASE1 (GLN PHOSPHORIBOSYL PYROPHOSPHATE AMIDOTRANSFERASE 1)	Amidophosphoribosyltransferase (ATase: EC 2.4.2.14) is a key enzyme in the pathway of purine nucleotide biosynthesis	O.I.	C.G.	H.G.
77.9	99.9	84.4	At5g13840	831230	FZR3 (FIZZY-RELATED 3)	F:signal transducer activity;P:signal transduction;C:chloroplast, heterotrimeric G-protein complex;MFBOPA	O.I.	C.G.	H.G.
76.1	99.9	29.1	At1g34355	840337	forkhead-associated domain-containing protein / FHA domain-containing protein	F:unknown;P:biological_process unknown;C:cellular_component unknown;MBOFPAV	O.I.	C.G.	H.G.
74.6	99.9	27.2	At4g01930	828198	DC1 domain-containing protein	F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;PMO	O.I.	C.G.	H.G.
73.5	99.9	67.5	At5g51480	835222	SKS2 (SKU5 SIMILAR 2)	F:oxidoreductase activity, copper ion binding;P:unknown;C:anchored to plasma membrane, plasma membrane, anchored to membrane;FBPMOA	O.I.	C.G.	H.G.
73.2	99.9	235.0	At2g12240	3768292	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
72.9	99.9	241.4	At3g30396	3769077	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
70.9	99.9	9.1	At4g00960	827937	protein kinase family protein	F:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
70.7	99.9	22.1	At2g45930	819201	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P	O.I.	C.G.	H.G.
70.6	99.9	70.5	At5g60200	836142	Dof-type zinc finger domain-containing protein	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PO	O.I.	C.G.	H.G.
70.4	99.9	60.4	At1g66620	842980	seven in absentia (SINA) protein, putative	F:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:multicellular organismal development, protein ubiquitination, ubiquitin-dependent protein catabolic process;C:nucleus;MOFPBVA	O.I.	C.G.	H.G.
69.6	99.9	42.6	At5g43980	834421	PDLP1 (PLASMODESMATA-LOCATED PROTEIN 1)	Encodes a plasmodesmal protein that affects the intercellular movement of molecules through the plasmodesmata. The cytoplasmic C-terminal portion of the protein is connected to the apoplastic N-terminal portion of the protein by a single transmembrane domain (TMD). It is transported to the plasmodesmata through the secretory pathway. PDLP1 has two DUF26 domains and a signal peptide, but the proper localization of the protein appears to depend on the TMD.	O.I.	C.G.	H.G.
68.6	99.9	95.7	At1g68360	843165	zinc finger protein-related	F:transcription factor activity;P:regulation of transcription;C:intracellular;PMO	O.I.	C.G.	H.G.
68.5	99.9	25.0	At2g02820	814812	MYB88 (myb domain protein 88)	Encodes a putative transcription factor (MYB88), involved in stomata development, double loss of MYB88 and FLP (MYB124) activity results in a failure of guard mother cells (GMCs) to adopt the guard cell fate, thus they continue to divide resulting in abnormal stomata consisting of clusters of numerous guard cell-like cells. This phenotype is enhanced in double mutants over the single mutant flp phenotype.	O.I.	C.G.	H.G.
67.8	99.9	157.2	At2g04000	814926	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
65.3	99.8	141.3	At5g49280	834988	hydroxyproline-rich glycoprotein family protein	F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;MPFOBVA	O.I.	C.G.	H.G.
64.1	99.8	68.7	At2g01640	814693	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POF	O.I.	C.G.	H.G.
63.1	99.8	71.1	At2g42710	818871	ribosomal protein L1 family protein	F:structural constituent of ribosome, RNA binding;P:translation, RNA processing;C:ribosome, intracellular, large ribosomal subunit;BOMFPAV	O.I.	C.G.	H.G.
62.6	99.8	147.1	At1g15440	838115	transducin family protein / WD-40 repeat family protein	F:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;MFOBPA	O.I.	C.G.	H.G.
62.5	99.8	54.7	At5g53830	835464	VQ motif-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFBM	O.I.	C.G.	H.G.
62.4	99.8	215.7	At2g10640	3767859	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
62.0	99.8	42.9	At4g01860	827918	transducin family protein / WD-40 repeat family protein	F:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;MBFOPA	O.I.	C.G.	H.G.
61.5	99.8	50.6	At5g40150	834012	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOB	O.I.	C.G.	H.G.
60.8	99.8	27.9	At3g61340	825306	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
60.5	99.8	70.5	At2g16650	816166	antiporter/ drug transporter	F:drug transporter activity, antiporter activity;P:multidrug transport;C:chloroplast, membrane;PMO	O.I.	C.G.	H.G.
60.0	99.8	53.2	At2g15790	816074	SQN (SQUINT)	SQN encodes the Arabidopsis homolog of cyclophilin 40 (CyP40). It is specifically required for the vegetative but not the reproductive maturation of the shoot.	O.I.	C.G.	H.G.
59.9	99.8	21.6	At4g01920	828197	DC1 domain-containing protein	F:unknown;P:intracellular signaling cascade;C:cellular_component unknown;PMO	O.I.	C.G.	H.G.
58.9	99.8	41.0	At5g57130	835819	protein binding	F:protein binding;P:protein metabolic process;C:cellular_component unknown;PBOAM	O.I.	C.G.	H.G.
58.7	99.8	83.8	At2g03780	814905	translin family protein	F:sequence-specific DNA binding, DNA binding;P:biological_process unknown;C:unknown;MFAOP	O.I.	C.G.	H.G.
57.9	99.8	26.7	At5g25290	832601	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
57.0	99.8	88.4	At2g03800	814906	GEK1 (GEKO1)	encodes a D-aminoacyl-tRNA deacylase. Involved in detoxification of D-aminoacyl-tRNA. Mutants also show ethanol-hypersensitive phenotype.	O.I.	C.G.	H.G.
56.7	99.8	37.3	At3g30160	822707	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
56.5	99.8	159.9	At1g52150	841645	ATHB-15	Member of the class III HD-ZIP protein family. Contains homeodomain and leucine zipper domain. Critical for vascular development and negatively regulates vascular cell differentiation.	O.I.	C.G.	H.G.
56.0	99.8	100.1	At1g69770	843313	CMT3 (chromomethylase 3)	Encodes a chromomethylase involved in methylating cytosine residues at non-CG sites. Involved in preferentially methylating transposon-related sequences, reducing their mobility. CMT3 interacts with an Arabidopsis homologue of HP1 (heterochromatin protein 1), which in turn interacts with methylated histones. Involved in gene silencing.	O.I.	C.G.	H.G.
55.6	99.8	56.5	At1g23890	839000	NHL repeat-containing protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BOMAP	O.I.	C.G.	H.G.
55.3	99.8	136.7	At1g15420	838113	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBV	O.I.	C.G.	H.G.
54.9	99.8	104.8	At2g47260	819339	WRKY23	member of WRKY Transcription Factor; Group I	O.I.	C.G.	H.G.
54.8	99.8	66.7	At5g57100	835814	transporter-related	F:unknown;P:unknown;C:membrane;PMFOB	O.I.	C.G.	H.G.
54.3	99.8	19.3	At3g30360	822737	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
53.8	99.8	100.6	At2g20800	816609	NDB4 (NAD(P)H dehydrogenase B4)	F:NADH dehydrogenase activity;P:unknown;C:extrinsic to mitochondrial inner membrane, mitochondrion, plastid;BOFPAM	O.I.	C.G.	H.G.
53.6	99.8	42.4	At4g00930	827980	CIP4.1	Encodes COP1-interacting protein CIP4.1.	O.I.	C.G.	H.G.
53.4	99.8	129.8	At5g25190	832590	ethylene-responsive element-binding protein, putative	encodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11.	O.I.	C.G.	H.G.
53.3	99.8	111.4	At2g02090	814740	ETL1	F:helicase activity, DNA binding, ATP binding, nucleic acid binding;P:unknown;C:chloroplast;BMOFPVA	O.I.	C.G.	H.G.
52.8	99.8	26.8	At1g07880	837303	ATMPK13	member of MAP Kinase	O.I.	C.G.	H.G.
52.1	99.8	36.5	At5g25800	832649	exonuclease family protein	F:exonuclease activity, nucleic acid binding;P:unknown;C:intracellular;MFOPBV	O.I.	C.G.	H.G.
51.9	99.8	58.3	At3g11520	820325	CYCB1	Encodes a B-type mitotic cyclin.	O.I.	C.G.	H.G.
51.9	99.8	42.4	At1g51450	841570	SPla/RYanodine receptor (SPRY) domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVA	O.I.	C.G.	H.G.
51.4	99.8	30.3	At4g23720	828472	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;P	O.I.	C.G.	H.G.
50.6	99.8	11.7	At1g60020	3767574	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
49.5	99.8	16.8	At5g03090	831803	unknown protein	F:molecular_function unknown;P:response to jasmonic acid stimulus;C:cellular_component unknown;P	O.I.	C.G.	H.G.
49.4	99.8	203.8	At2g27080	817250	harpin-induced protein-related / HIN1-related / harpin-responsive protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
49.4	99.8	20.6	At1g44510	3767344	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
49.3	99.8	35.5	At3g17030	820959	-	F:unknown;P:biological_process unknown;C:cellular_component unknown;PM	O.I.	C.G.	H.G.
49.1	99.8	159.7	At2g28510	817399	Dof-type zinc finger domain-containing protein	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleolus;POMFB	O.I.	C.G.	H.G.
48.8	99.8	61.4	At1g52160	841647	TRZ3 (TRNASE Z 3)	Encodes a tRNase Z.	O.I.	C.G.	H.G.
48.0	99.8	54.4	At2g28660	817415	copper-binding family protein	F:copper ion binding, metal ion binding;P:copper ion transport, metal ion transport;C:chloroplast;OPMBF	O.I.	C.G.	H.G.
47.9	99.8	30.6	At2g45460	819154	forkhead-associated domain-containing protein / FHA domain-containing protein	F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:chloroplast;MOBFPAV	O.I.	C.G.	H.G.
47.6	99.8	116.7	At4g12110	826819	SMO1-1 (STEROL-4ALPHA-METHYL OXIDASE 1-1)	Encodes a member of the SMO1 family of sterol 4alpha-methyl oxidases. More specifically functions as a 4,4-dimethyl-9beta,19-cyclopropylsterol-4alpha- methyl oxidase.	O.I.	C.G.	H.G.
47.6	99.8	106.2	At5g42970	834312	COP8 (CONSTITUTIVE PHOTOMORPHOGENIC 8)	encodes subunit 4 of COP9 signalosome complex. sequence is similar to a subunit of the 19S regulatory particle of the 26S proteasome. recessive mutation causes derepression of photomorphogenesis.	O.I.	C.G.	H.G.
47.3	99.8	59.1	At3g16870	820942	zinc finger (GATA type) family protein	F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus;FPMO	O.I.	C.G.	H.G.
47.1	99.8	51.3	At2g47680	819381	zinc finger (CCCH type) helicase family protein	F:helicase activity, zinc ion binding, nucleic acid binding, ATP binding;P:nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;C:chloroplast;MBOFPV	O.I.	C.G.	H.G.
45.9	99.8	78.3	At3g32900	823050	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
45.7	99.8	27.4	At2g25320	817070	-	F:unknown;P:unknown;C:chloroplast;MOBFPAV	O.I.	C.G.	H.G.
45.5	99.8	53.9	At5g48450	834900	sks3 (SKU5 Similar 3)	Encodes a protein with two DUF26 domains and a signal peptide for secretion. The protein is transported to the apoplast when it is expressed as a GFP fusion protein.	O.I.	C.G.	H.G.
44.9	99.8	51.2	At1g51580	841583	KH domain-containing protein	F:RNA binding, nucleic acid binding;P:unknown;C:unknown;MPFOBVA	O.I.	C.G.	H.G.
44.8	99.8	107.9	At3g16810	820934	APUM24 (Arabidopsis Pumilio 24)	F:RNA binding, binding;P:unknown;C:nucleolus;MFPOB	O.I.	C.G.	H.G.
43.9	99.8	223.5	At2g42570	818857	unknown protein	F:unknown;P:biological_process unknown;C:vacuole;P	O.I.	C.G.	H.G.
43.5	99.8	52.1	At2g07690	815415	minichromosome maintenance family protein / MCM family protein	Member of the minichromosome maintenance complex, involved in DNA replication initiation. Abundant in proliferating and endocycling tissues. Localized in the nucleus during G1, S and G2 phases of the cell cycle, and are released into the cytoplasmic compartment during mitosis. Binds chromatin.	O.I.	C.G.	H.G.
43.0	99.8	132.4	At2g45440	819152	DHDPS2 (DIHYDRODIPICOLINATE SYNTHASE)	Encodes a protein that likely has dihydropicolinate synthase activity based on its mutant phenotype of decreased lysine levels and increased aspartate levels. The mutant also has increased levels of threonine. The enzyme is predicted to localize to the chloroplast.	O.I.	C.G.	H.G.
42.9	99.8	27.1	At1g20270	838615	oxidoreductase, 2OG-Fe(II) oxygenase family protein	F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity, iron ion binding;P:protein metabolic process, peptidyl-proline hydroxylation to 4-hydroxy-L-proline;C:unknown;MOPBFV	O.I.	C.G.	H.G.
42.5	99.8	108.2	At5g26220	832691	ChaC-like family protein	F:molecular_function unknown;P:response to lead ion, response to cadmium ion;C:cellular_component unknown;BMOFP	O.I.	C.G.	H.G.
42.4	99.8	15.3	At1g45100	841077	polyadenylate-binding protein, putative / PABP, putative	F:RNA binding, nucleotide binding, nucleic acid binding;P:unknown;C:unknown;MFPOB	O.I.	C.G.	H.G.
41.9	99.8	23.8	At2g16450	816143	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
41.5	99.8	45.8	At1g26340	839176	CB5-A (CYTOCHROME B5 ISOFORM A)	encodes a member of the cytochromes b5 family of proteins that localizes to the outer envelope of the chloroplast. The C-terminal portion of the protein appears to be capable of inserting into a plant microsomal membrane in vitro.	O.I.	C.G.	H.G.
41.1	99.8	22.8	At2g15630	816056	pentatricopeptide (PPR) repeat-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBA	O.I.	C.G.	H.G.
40.7	99.8	16.2	At5g24750	832544	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BFPOVM	O.I.	C.G.	H.G.
40.5	99.8	79.7	At2g16440	816142	DNA replication licensing factor, putative	F:nucleoside-triphosphatase activity, DNA-dependent ATPase activity, DNA binding, nucleotide binding, ATP binding;P:DNA replication initiation, DNA replication;C:nucleus, chloroplast;MOFPBAV	O.I.	C.G.	H.G.

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GSM ID	GSM134204
Assay name	Murray_3-2_D3-GROWTH_Rep1_ATH1
GSE experiment	GSE5750: Growth of suspension-cultured cells

Microarray experiments to specifically-expressed genes

GSM ID GSM134204 Assay name Murray_3-2_D3-GROWTH_Rep1_ATH1 GSE experiment GSE5750: Growth of suspension-cultured cells

GSM ID GSM134204

Assay name Murray_3-2_D3-GROWTH_Rep1_ATH1

GSE experiment GSE5750: Growth of suspension-cultured cells