CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM134202

Assay name Murray_3-1_D1-GROWTH_Rep1_ATH1

GSE experiment GSE5750: Growth of suspension-cultured cells

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
258.2 100.0 266.7 At5g26220 832691 ChaC-like family protein F:molecular_function unknown;P:response to lead ion, response to cadmium ion;C:cellular_component unknown;BMOFP O.I. C.G. H.G.
236.3 100.0 261.1 At1g03820 839400 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OPFMB O.I. C.G. H.G.
222.2 100.0 249.6 At2g44460 819053 BGLU28 (BETA GLUCOSIDASE 28) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:membrane;BOPMFA O.I. C.G. H.G.
218.4 100.0 114.7 At1g51380 841562 eukaryotic translation initiation factor 4A, putative / eIF-4A, putative F:helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding;P:unknown;C:cellular_component unknown;BOMFPAV O.I. C.G. H.G.
206.5 100.0 89.9 At1g36180 840522 ACC2 (ACETYL-COA CARBOXYLASE 2) acetyl-CoA carboxylase 2 (ACC2) O.I. C.G. H.G.
202.8 100.0 32.4 At1g01530 837142 AGL28 (AGAMOUS-LIKE 28) F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMFO O.I. C.G. H.G.
198.3 100.0 78.0 At3g16980 820954 NRPB9A One of two highly similar, non-catalytic subunits common to nuclear DNA-directed RNA polymerases II, IV and V; homologous to budding yeast RPB9. Appears to be redundant with At4g16265 O.I. C.G. H.G.
196.7 100.0 254.2 At3g27400 822361 pectate lyase family protein F:pectate lyase activity;P:biological_process unknown;C:endomembrane system;BPFO O.I. C.G. H.G.
157.0 99.9 171.9 At2g20800 816609 NDB4 (NAD(P)H dehydrogenase B4) F:NADH dehydrogenase activity;P:unknown;C:extrinsic to mitochondrial inner membrane, mitochondrion, plastid;BOFPAM O.I. C.G. H.G.
156.0 99.9 51.0 At3g42725 823305 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
152.5 99.9 333.9 At2g01610 814690 invertase/pectin methylesterase inhibitor family protein F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
148.5 99.9 62.8 At4g01970 828186 AtSTS (Arabidopsis thaliana stachyose synthase) Encodes a putative stachyose synthetase. O.I. C.G. H.G.
131.3 99.9 45.6 At4g39320 830087 microtubule-associated protein-related F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MOFBP O.I. C.G. H.G.
131.2 99.9 150.8 At1g33940 840291 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO O.I. C.G. H.G.
127.0 99.9 197.1 At1g71380 843479 ATCEL3 (ARABIDOPSIS THALIANA CELLULASE 3) F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:cell wall, plasma membrane, plant-type cell wall;PBMOF O.I. C.G. H.G.
122.7 99.9 76.1 At2g15790 816074 SQN (SQUINT) SQN encodes the Arabidopsis homolog of cyclophilin 40 (CyP40). It is specifically required for the vegetative but not the reproductive maturation of the shoot. O.I. C.G. H.G.
116.5 99.9 38.6 At3g61340 825306 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
114.7 99.9 294.3 At2g12240 3768292 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
113.3 99.9 65.7 At1g52850 3767446 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
110.3 99.9 286.8 At2g10640 3767859 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
109.9 99.9 53.6 At5g43980 834421 PDLP1 (PLASMODESMATA-LOCATED PROTEIN 1) Encodes a plasmodesmal protein that affects the intercellular movement of molecules through the plasmodesmata. The cytoplasmic C-terminal portion of the protein is connected to the apoplastic N-terminal portion of the protein by a single transmembrane domain (TMD). It is transported to the plasmodesmata through the secretory pathway. PDLP1 has two DUF26 domains and a signal peptide, but the proper localization of the protein appears to depend on the TMD. O.I. C.G. H.G.
106.8 99.9 292.2 At3g30396 3769077 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
100.8 99.9 254.2 At2g12300 3768253 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
92.8 99.9 55.8 At4g00930 827980 CIP4.1 Encodes COP1-interacting protein CIP4.1. O.I. C.G. H.G.
91.6 99.9 126.8 At1g23410 838949 ubiquitin extension protein, putative / 40S ribosomal protein S27A (RPS27aA) F:protein binding, structural constituent of ribosome;P:protein ubiquitination during ubiquitin-dependent protein catabolic process, protein modification process, translation;C:cytosolic small ribosomal subunit, plasma membrane;MPOFVAB O.I. C.G. H.G.
87.8 99.9 124.2 At1g36240 840530 60S ribosomal protein L30 (RPL30A) F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit;MOAFPB O.I. C.G. H.G.
86.8 99.9 43.3 At5g14400 831291 CYP724A1 member of CYP724A O.I. C.G. H.G.
83.7 99.9 116.6 At5g52390 835315 photoassimilate-responsive protein, putative F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
82.0 99.9 128.1 At2g47260 819339 WRKY23 member of WRKY Transcription Factor; Group I O.I. C.G. H.G.
77.2 99.9 101.5 At1g68360 843165 zinc finger protein-related F:transcription factor activity;P:regulation of transcription;C:intracellular;PMO O.I. C.G. H.G.
73.3 99.9 36.0 At2g07140 815283 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
72.8 99.9 53.0 At1g23100 838918 10 kDa chaperonin, putative F:ATP binding;P:protein folding;C:mitochondrion;BOMPFV O.I. C.G. H.G.
72.6 99.9 105.6 At2g17820 816291 ATHK1 (histidine kinase 1) Encodes a member of the histidine kinase family. O.I. C.G. H.G.
70.9 99.9 35.6 At5g61690 836291 ATATH15 member of ATH subfamily O.I. C.G. H.G.
70.4 99.9 38.5 At2g44510 819058 p21Cip1-binding protein-related F:molecular_function unknown;P:biological_process unknown;C:nucleolus;MFOP O.I. C.G. H.G.
66.7 99.8 41.0 At1g22090 838814 emb2204 (embryo defective 2204) F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:cellular_component unknown;P O.I. C.G. H.G.
65.6 99.8 26.1 At5g18920 832010 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PF O.I. C.G. H.G.
65.1 99.8 77.4 At1g60030 842297 xanthine/uracil permease family protein F:transmembrane transporter activity;P:transport;C:plasma membrane, membrane;BOMPFAV O.I. C.G. H.G.
64.9 99.8 30.7 At2g02020 814733 proton-dependent oligopeptide transport (POT) family protein F:transporter activity;P:oligopeptide transport;C:membrane;BPMOF O.I. C.G. H.G.
64.9 99.8 25.4 At4g01930 828198 DC1 domain-containing protein F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;PMO O.I. C.G. H.G.
64.6 99.8 27.8 At5g64060 836527 anac103 (Arabidopsis NAC domain containing protein 103) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P O.I. C.G. H.G.
62.6 99.8 67.9 At2g01640 814693 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POF O.I. C.G. H.G.
62.2 99.8 32.7 At5g56970 835799 CKX3 (CYTOKININ OXIDASE 3) It encodes a protein whose sequence is similar to cytokinin oxidase/dehydrogenase, which catalyzes the degradation of cytokinins. O.I. C.G. H.G.
61.2 99.8 118.3 At2g16570 816156 ATASE1 (GLN PHOSPHORIBOSYL PYROPHOSPHATE AMIDOTRANSFERASE 1) Amidophosphoribosyltransferase (ATase: EC 2.4.2.14) is a key enzyme in the pathway of purine nucleotide biosynthesis O.I. C.G. H.G.
60.8 99.8 23.1 At4g35370 829690 nucleotide binding F:nucleotide binding;P:biological_process unknown;C:cellular_component unknown;MFOBPA O.I. C.G. H.G.
60.2 99.8 12.6 At2g43270 818929 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
60.1 99.8 66.4 At5g59240 836042 40S ribosomal protein S8 (RPS8B) F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic small ribosomal subunit, cytosolic ribosome, ribosome, membrane;MAOFP O.I. C.G. H.G.
58.0 99.8 20.0 At3g30360 822737 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
56.9 99.8 81.4 At2g04770 3767978 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
55.8 99.8 30.3 At2g25320 817070 - F:unknown;P:unknown;C:chloroplast;MOBFPAV O.I. C.G. H.G.
55.7 99.8 149.9 At2g29440 817493 ATGSTU6 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 6) Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). O.I. C.G. H.G.
55.6 99.8 132.5 At5g25190 832590 ethylene-responsive element-binding protein, putative encodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11. O.I. C.G. H.G.
55.4 99.8 64.0 At3g16870 820942 zinc finger (GATA type) family protein F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus;FPMO O.I. C.G. H.G.
55.3 99.8 99.4 At1g69770 843313 CMT3 (chromomethylase 3) Encodes a chromomethylase involved in methylating cytosine residues at non-CG sites. Involved in preferentially methylating transposon-related sequences, reducing their mobility. CMT3 interacts with an Arabidopsis homologue of HP1 (heterochromatin protein 1), which in turn interacts with methylated histones. Involved in gene silencing. O.I. C.G. H.G.
53.2 99.8 139.3 At2g04000 814926 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
52.5 99.8 21.2 At1g44510 3767344 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
51.9 99.8 36.5 At5g25800 832649 exonuclease family protein F:exonuclease activity, nucleic acid binding;P:unknown;C:intracellular;MFOPBV O.I. C.G. H.G.
50.2 99.8 161.6 At2g28510 817399 Dof-type zinc finger domain-containing protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleolus;POMFB O.I. C.G. H.G.
49.5 99.8 154.1 At5g39850 833981 40S ribosomal protein S9 (RPS9C) F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, membrane;POBMFA O.I. C.G. H.G.
48.4 99.8 48.1 At5g53830 835464 VQ motif-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFBM O.I. C.G. H.G.
48.2 99.8 34.9 At1g20370 838625 tRNA pseudouridine synthase family protein F:pseudouridine synthase activity;P:tRNA processing, pseudouridine synthesis;C:cellular_component unknown;BOMFAP O.I. C.G. H.G.
47.2 99.8 19.3 At4g18630 827597 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PMOF O.I. C.G. H.G.
47.0 99.8 30.3 At1g44060 3767336 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
46.3 99.8 104.7 At5g42970 834312 COP8 (CONSTITUTIVE PHOTOMORPHOGENIC 8) encodes subunit 4 of COP9 signalosome complex. sequence is similar to a subunit of the 19S regulatory particle of the 26S proteasome. recessive mutation causes derepression of photomorphogenesis. O.I. C.G. H.G.
46.2 99.8 48.0 At5g65900 836719 DEAD/DEAH box helicase, putative F:helicase activity, ATP-dependent helicase activity, nucleic acid binding, ATP binding;P:unknown;C:cellular_component unknown;MOBFPVA O.I. C.G. H.G.
45.9 99.8 86.1 At3g51720 824335 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBPFAV O.I. C.G. H.G.
45.3 99.8 81.6 At4g25530 828658 FWA Encodes a homeodomain-containing transcription factor that controls flowering. FWA is silenced in wild type plants and reverse of the imprinted silencing causes a late flowering phenotype. FWA gene contains two tandem repeats around the transcription start site that are necessary and sufficient for silencing via DNA methylation. O.I. C.G. H.G.
44.5 99.8 57.6 At5g05990 830486 mitochondrial glycoprotein family protein / MAM33 family protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion, mitochondrial matrix;PFOM O.I. C.G. H.G.
44.4 99.8 91.4 At1g33410 840234 SAR1 (suppressor of auxin resistance1) F:unknown;P:response to auxin stimulus, mRNA export from nucleus, developmental process;C:nuclear membrane;MPFO O.I. C.G. H.G.
43.9 99.8 33.7 At1g67110 843031 CYP735A2 member of CYP709A O.I. C.G. H.G.
43.1 99.8 131.4 At4g01560 828136 MEE49 (maternal effect embryo arrest 49) F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:cellular_component unknown;FMOPA O.I. C.G. H.G.
42.9 99.8 36.8 At5g38300 833812 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPO O.I. C.G. H.G.
42.3 99.8 57.2 At1g52160 841647 TRZ3 (TRNASE Z 3) Encodes a tRNase Z. O.I. C.G. H.G.
42.2 99.8 188.3 At2g27080 817250 harpin-induced protein-related / HIN1-related / harpin-responsive protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
41.9 99.8 58.0 At2g42710 818871 ribosomal protein L1 family protein F:structural constituent of ribosome, RNA binding;P:translation, RNA processing;C:ribosome, intracellular, large ribosomal subunit;BOMFPAV O.I. C.G. H.G.
41.7 99.8 17.1 At1g22980 838905 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM O.I. C.G. H.G.
41.6 99.8 31.9 At3g30160 822707 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
41.5 99.8 45.1 At3g50410 824205 OBP1 (OBF BINDING PROTEIN 1) Arabidopsis Dof protein containing a single 51-amino acid zinc finger DNA-binding domain, which may play an important roles in plant growth and development. O.I. C.G. H.G.
41.4 99.8 55.9 At1g33450 840238 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
40.1 99.8 29.0 At1g23790 838990 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFBO O.I. C.G. H.G.
39.9 99.8 12.3 At3g16890 820944 PPR40 (PENTATRICOPEPTIDE (PPR) DOMAIN PROTEIN 40) Encodes a mitochondrial pentatricopeptide repeat (PPR) domain protein, PPR40, which provides a signalling link between mitochondrial electron transport and regulation of stress and hormonal responses. Mutations in PPR40 result in enhanced sensitivity to salt, ABA and oxidative stress, as well as reduced electron transport through Complex III (cytochrome c reductase). O.I. C.G. H.G.
39.3 99.8 17.0 At5g44980 834529 F-box family protein F:unknown;P:unknown;C:cellular_component unknown;P O.I. C.G. H.G.
39.3 99.8 12.2 At2g31470 817705 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
39.0 99.8 88.8 At5g06720 830561 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOMV O.I. C.G. H.G.
38.9 99.8 29.8 At3g51530 824316 F-box family protein F:molecular_function unknown;P:unknown;C:unknown;P O.I. C.G. H.G.
38.5 99.8 222.8 At2g44450 819052 BGLU15 (BETA GLUCOSIDASE 15) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:cell wall, plant-type cell wall;BOPMFA O.I. C.G. H.G.
38.5 99.8 95.1 At3g07410 819929 AtRABA5b (Arabidopsis Rab GTPase homolog A5b) F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:plasma membrane;MOFPBVA O.I. C.G. H.G.
38.5 99.8 13.8 At1g02250 839390 anac005 (Arabidopsis NAC domain containing protein 5) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P O.I. C.G. H.G.
38.0 99.8 21.8 At2g01740 814704 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBA O.I. C.G. H.G.
37.8 99.8 171.7 At3g54260 824593 unknown protein F:unknown;P:biological_process unknown;C:endomembrane system;PM O.I. C.G. H.G.
37.7 99.7 174.4 At5g46700 834713 TRN2 (TORNADO 2) Encodes a transmembrane protein of the tetraspanin (TET) family, one of 17 members found in Arabidopsis. Double mutant analysis showed that TRN1 and TRN2 act in the same pathway. Required for the maintenance of both the radial pattern of tissue differentiation in the root and for the subsequent circumferential pattern within the epidermis. O.I. C.G. H.G.
37.5 99.7 51.2 At3g18610 821392 ATRANGAP1 (RAN GTPASE-ACTIVATING PROTEIN 1) F:nucleotide binding, nucleic acid binding;P:unknown;C:unknown;MOFBPVA O.I. C.G. H.G.
37.3 99.7 158.1 At2g27840 817331 HDT4 Belongs to the plant specific HD2 type proteins; similar to nucleolar Zea mays histone deacetylase; HD2-p39 O.I. C.G. H.G.
37.2 99.7 46.6 At4g22960 828395 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPB O.I. C.G. H.G.
36.7 99.7 14.5 At5g03090 831803 unknown protein F:molecular_function unknown;P:response to jasmonic acid stimulus;C:cellular_component unknown;P O.I. C.G. H.G.
36.4 99.7 12.4 At2g47860 819398 phototropic-responsive NPH3 family protein F:protein binding, signal transducer activity;P:response to light stimulus;C:plasma membrane;P O.I. C.G. H.G.
36.0 99.7 112.4 At2g15690 816062 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFBVA O.I. C.G. H.G.
35.7 99.7 45.6 At1g51580 841583 KH domain-containing protein F:RNA binding, nucleic acid binding;P:unknown;C:unknown;MPFOBVA O.I. C.G. H.G.
35.4 99.7 95.8 At3g16810 820934 APUM24 (Arabidopsis Pumilio 24) F:RNA binding, binding;P:unknown;C:nucleolus;MFPOB O.I. C.G. H.G.
35.2 99.7 12.7 At3g27620 822384 AOX1C encodes an isoform of alternate oxidase. expressed in all tissues examined and expression is not induced by antimycin A, an inhibitor of complex III in the mitochondrial respiratory chain. O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
258.2	100.0	266.7	At5g26220	832691	ChaC-like family protein	F:molecular_function unknown;P:response to lead ion, response to cadmium ion;C:cellular_component unknown;BMOFP	O.I.	C.G.	H.G.
236.3	100.0	261.1	At1g03820	839400	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OPFMB	O.I.	C.G.	H.G.
222.2	100.0	249.6	At2g44460	819053	BGLU28 (BETA GLUCOSIDASE 28)	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:membrane;BOPMFA	O.I.	C.G.	H.G.
218.4	100.0	114.7	At1g51380	841562	eukaryotic translation initiation factor 4A, putative / eIF-4A, putative	F:helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding;P:unknown;C:cellular_component unknown;BOMFPAV	O.I.	C.G.	H.G.
206.5	100.0	89.9	At1g36180	840522	ACC2 (ACETYL-COA CARBOXYLASE 2)	acetyl-CoA carboxylase 2 (ACC2)	O.I.	C.G.	H.G.
202.8	100.0	32.4	At1g01530	837142	AGL28 (AGAMOUS-LIKE 28)	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMFO	O.I.	C.G.	H.G.
198.3	100.0	78.0	At3g16980	820954	NRPB9A	One of two highly similar, non-catalytic subunits common to nuclear DNA-directed RNA polymerases II, IV and V; homologous to budding yeast RPB9. Appears to be redundant with At4g16265	O.I.	C.G.	H.G.
196.7	100.0	254.2	At3g27400	822361	pectate lyase family protein	F:pectate lyase activity;P:biological_process unknown;C:endomembrane system;BPFO	O.I.	C.G.	H.G.
157.0	99.9	171.9	At2g20800	816609	NDB4 (NAD(P)H dehydrogenase B4)	F:NADH dehydrogenase activity;P:unknown;C:extrinsic to mitochondrial inner membrane, mitochondrion, plastid;BOFPAM	O.I.	C.G.	H.G.
156.0	99.9	51.0	At3g42725	823305	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
152.5	99.9	333.9	At2g01610	814690	invertase/pectin methylesterase inhibitor family protein	F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
148.5	99.9	62.8	At4g01970	828186	AtSTS (Arabidopsis thaliana stachyose synthase)	Encodes a putative stachyose synthetase.	O.I.	C.G.	H.G.
131.3	99.9	45.6	At4g39320	830087	microtubule-associated protein-related	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MOFBP	O.I.	C.G.	H.G.
131.2	99.9	150.8	At1g33940	840291	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO	O.I.	C.G.	H.G.
127.0	99.9	197.1	At1g71380	843479	ATCEL3 (ARABIDOPSIS THALIANA CELLULASE 3)	F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:cell wall, plasma membrane, plant-type cell wall;PBMOF	O.I.	C.G.	H.G.
122.7	99.9	76.1	At2g15790	816074	SQN (SQUINT)	SQN encodes the Arabidopsis homolog of cyclophilin 40 (CyP40). It is specifically required for the vegetative but not the reproductive maturation of the shoot.	O.I.	C.G.	H.G.
116.5	99.9	38.6	At3g61340	825306	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
114.7	99.9	294.3	At2g12240	3768292	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
113.3	99.9	65.7	At1g52850	3767446	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
110.3	99.9	286.8	At2g10640	3767859	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
109.9	99.9	53.6	At5g43980	834421	PDLP1 (PLASMODESMATA-LOCATED PROTEIN 1)	Encodes a plasmodesmal protein that affects the intercellular movement of molecules through the plasmodesmata. The cytoplasmic C-terminal portion of the protein is connected to the apoplastic N-terminal portion of the protein by a single transmembrane domain (TMD). It is transported to the plasmodesmata through the secretory pathway. PDLP1 has two DUF26 domains and a signal peptide, but the proper localization of the protein appears to depend on the TMD.	O.I.	C.G.	H.G.
106.8	99.9	292.2	At3g30396	3769077	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
100.8	99.9	254.2	At2g12300	3768253	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
92.8	99.9	55.8	At4g00930	827980	CIP4.1	Encodes COP1-interacting protein CIP4.1.	O.I.	C.G.	H.G.
91.6	99.9	126.8	At1g23410	838949	ubiquitin extension protein, putative / 40S ribosomal protein S27A (RPS27aA)	F:protein binding, structural constituent of ribosome;P:protein ubiquitination during ubiquitin-dependent protein catabolic process, protein modification process, translation;C:cytosolic small ribosomal subunit, plasma membrane;MPOFVAB	O.I.	C.G.	H.G.
87.8	99.9	124.2	At1g36240	840530	60S ribosomal protein L30 (RPL30A)	F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit;MOAFPB	O.I.	C.G.	H.G.
86.8	99.9	43.3	At5g14400	831291	CYP724A1	member of CYP724A	O.I.	C.G.	H.G.
83.7	99.9	116.6	At5g52390	835315	photoassimilate-responsive protein, putative	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
82.0	99.9	128.1	At2g47260	819339	WRKY23	member of WRKY Transcription Factor; Group I	O.I.	C.G.	H.G.
77.2	99.9	101.5	At1g68360	843165	zinc finger protein-related	F:transcription factor activity;P:regulation of transcription;C:intracellular;PMO	O.I.	C.G.	H.G.
73.3	99.9	36.0	At2g07140	815283	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
72.8	99.9	53.0	At1g23100	838918	10 kDa chaperonin, putative	F:ATP binding;P:protein folding;C:mitochondrion;BOMPFV	O.I.	C.G.	H.G.
72.6	99.9	105.6	At2g17820	816291	ATHK1 (histidine kinase 1)	Encodes a member of the histidine kinase family.	O.I.	C.G.	H.G.
70.9	99.9	35.6	At5g61690	836291	ATATH15	member of ATH subfamily	O.I.	C.G.	H.G.
70.4	99.9	38.5	At2g44510	819058	p21Cip1-binding protein-related	F:molecular_function unknown;P:biological_process unknown;C:nucleolus;MFOP	O.I.	C.G.	H.G.
66.7	99.8	41.0	At1g22090	838814	emb2204 (embryo defective 2204)	F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:cellular_component unknown;P	O.I.	C.G.	H.G.
65.6	99.8	26.1	At5g18920	832010	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PF	O.I.	C.G.	H.G.
65.1	99.8	77.4	At1g60030	842297	xanthine/uracil permease family protein	F:transmembrane transporter activity;P:transport;C:plasma membrane, membrane;BOMPFAV	O.I.	C.G.	H.G.
64.9	99.8	30.7	At2g02020	814733	proton-dependent oligopeptide transport (POT) family protein	F:transporter activity;P:oligopeptide transport;C:membrane;BPMOF	O.I.	C.G.	H.G.
64.9	99.8	25.4	At4g01930	828198	DC1 domain-containing protein	F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;PMO	O.I.	C.G.	H.G.
64.6	99.8	27.8	At5g64060	836527	anac103 (Arabidopsis NAC domain containing protein 103)	F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P	O.I.	C.G.	H.G.
62.6	99.8	67.9	At2g01640	814693	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POF	O.I.	C.G.	H.G.
62.2	99.8	32.7	At5g56970	835799	CKX3 (CYTOKININ OXIDASE 3)	It encodes a protein whose sequence is similar to cytokinin oxidase/dehydrogenase, which catalyzes the degradation of cytokinins.	O.I.	C.G.	H.G.
61.2	99.8	118.3	At2g16570	816156	ATASE1 (GLN PHOSPHORIBOSYL PYROPHOSPHATE AMIDOTRANSFERASE 1)	Amidophosphoribosyltransferase (ATase: EC 2.4.2.14) is a key enzyme in the pathway of purine nucleotide biosynthesis	O.I.	C.G.	H.G.
60.8	99.8	23.1	At4g35370	829690	nucleotide binding	F:nucleotide binding;P:biological_process unknown;C:cellular_component unknown;MFOBPA	O.I.	C.G.	H.G.
60.2	99.8	12.6	At2g43270	818929	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
60.1	99.8	66.4	At5g59240	836042	40S ribosomal protein S8 (RPS8B)	F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic small ribosomal subunit, cytosolic ribosome, ribosome, membrane;MAOFP	O.I.	C.G.	H.G.
58.0	99.8	20.0	At3g30360	822737	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
56.9	99.8	81.4	At2g04770	3767978	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
55.8	99.8	30.3	At2g25320	817070	-	F:unknown;P:unknown;C:chloroplast;MOBFPAV	O.I.	C.G.	H.G.
55.7	99.8	149.9	At2g29440	817493	ATGSTU6 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 6)	Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).	O.I.	C.G.	H.G.
55.6	99.8	132.5	At5g25190	832590	ethylene-responsive element-binding protein, putative	encodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11.	O.I.	C.G.	H.G.
55.4	99.8	64.0	At3g16870	820942	zinc finger (GATA type) family protein	F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus;FPMO	O.I.	C.G.	H.G.
55.3	99.8	99.4	At1g69770	843313	CMT3 (chromomethylase 3)	Encodes a chromomethylase involved in methylating cytosine residues at non-CG sites. Involved in preferentially methylating transposon-related sequences, reducing their mobility. CMT3 interacts with an Arabidopsis homologue of HP1 (heterochromatin protein 1), which in turn interacts with methylated histones. Involved in gene silencing.	O.I.	C.G.	H.G.
53.2	99.8	139.3	At2g04000	814926	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
52.5	99.8	21.2	At1g44510	3767344	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
51.9	99.8	36.5	At5g25800	832649	exonuclease family protein	F:exonuclease activity, nucleic acid binding;P:unknown;C:intracellular;MFOPBV	O.I.	C.G.	H.G.
50.2	99.8	161.6	At2g28510	817399	Dof-type zinc finger domain-containing protein	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleolus;POMFB	O.I.	C.G.	H.G.
49.5	99.8	154.1	At5g39850	833981	40S ribosomal protein S9 (RPS9C)	F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, membrane;POBMFA	O.I.	C.G.	H.G.
48.4	99.8	48.1	At5g53830	835464	VQ motif-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFBM	O.I.	C.G.	H.G.
48.2	99.8	34.9	At1g20370	838625	tRNA pseudouridine synthase family protein	F:pseudouridine synthase activity;P:tRNA processing, pseudouridine synthesis;C:cellular_component unknown;BOMFAP	O.I.	C.G.	H.G.
47.2	99.8	19.3	At4g18630	827597	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;PMOF	O.I.	C.G.	H.G.
47.0	99.8	30.3	At1g44060	3767336	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
46.3	99.8	104.7	At5g42970	834312	COP8 (CONSTITUTIVE PHOTOMORPHOGENIC 8)	encodes subunit 4 of COP9 signalosome complex. sequence is similar to a subunit of the 19S regulatory particle of the 26S proteasome. recessive mutation causes derepression of photomorphogenesis.	O.I.	C.G.	H.G.
46.2	99.8	48.0	At5g65900	836719	DEAD/DEAH box helicase, putative	F:helicase activity, ATP-dependent helicase activity, nucleic acid binding, ATP binding;P:unknown;C:cellular_component unknown;MOBFPVA	O.I.	C.G.	H.G.
45.9	99.8	86.1	At3g51720	824335	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBPFAV	O.I.	C.G.	H.G.
45.3	99.8	81.6	At4g25530	828658	FWA	Encodes a homeodomain-containing transcription factor that controls flowering. FWA is silenced in wild type plants and reverse of the imprinted silencing causes a late flowering phenotype. FWA gene contains two tandem repeats around the transcription start site that are necessary and sufficient for silencing via DNA methylation.	O.I.	C.G.	H.G.
44.5	99.8	57.6	At5g05990	830486	mitochondrial glycoprotein family protein / MAM33 family protein	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion, mitochondrial matrix;PFOM	O.I.	C.G.	H.G.
44.4	99.8	91.4	At1g33410	840234	SAR1 (suppressor of auxin resistance1)	F:unknown;P:response to auxin stimulus, mRNA export from nucleus, developmental process;C:nuclear membrane;MPFO	O.I.	C.G.	H.G.
43.9	99.8	33.7	At1g67110	843031	CYP735A2	member of CYP709A	O.I.	C.G.	H.G.
43.1	99.8	131.4	At4g01560	828136	MEE49 (maternal effect embryo arrest 49)	F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:cellular_component unknown;FMOPA	O.I.	C.G.	H.G.
42.9	99.8	36.8	At5g38300	833812	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPO	O.I.	C.G.	H.G.
42.3	99.8	57.2	At1g52160	841647	TRZ3 (TRNASE Z 3)	Encodes a tRNase Z.	O.I.	C.G.	H.G.
42.2	99.8	188.3	At2g27080	817250	harpin-induced protein-related / HIN1-related / harpin-responsive protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
41.9	99.8	58.0	At2g42710	818871	ribosomal protein L1 family protein	F:structural constituent of ribosome, RNA binding;P:translation, RNA processing;C:ribosome, intracellular, large ribosomal subunit;BOMFPAV	O.I.	C.G.	H.G.
41.7	99.8	17.1	At1g22980	838905	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM	O.I.	C.G.	H.G.
41.6	99.8	31.9	At3g30160	822707	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
41.5	99.8	45.1	At3g50410	824205	OBP1 (OBF BINDING PROTEIN 1)	Arabidopsis Dof protein containing a single 51-amino acid zinc finger DNA-binding domain, which may play an important roles in plant growth and development.	O.I.	C.G.	H.G.
41.4	99.8	55.9	At1g33450	840238	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
40.1	99.8	29.0	At1g23790	838990	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFBO	O.I.	C.G.	H.G.
39.9	99.8	12.3	At3g16890	820944	PPR40 (PENTATRICOPEPTIDE (PPR) DOMAIN PROTEIN 40)	Encodes a mitochondrial pentatricopeptide repeat (PPR) domain protein, PPR40, which provides a signalling link between mitochondrial electron transport and regulation of stress and hormonal responses. Mutations in PPR40 result in enhanced sensitivity to salt, ABA and oxidative stress, as well as reduced electron transport through Complex III (cytochrome c reductase).	O.I.	C.G.	H.G.
39.3	99.8	17.0	At5g44980	834529	F-box family protein	F:unknown;P:unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
39.3	99.8	12.2	At2g31470	817705	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
39.0	99.8	88.8	At5g06720	830561	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOMV	O.I.	C.G.	H.G.
38.9	99.8	29.8	At3g51530	824316	F-box family protein	F:molecular_function unknown;P:unknown;C:unknown;P	O.I.	C.G.	H.G.
38.5	99.8	222.8	At2g44450	819052	BGLU15 (BETA GLUCOSIDASE 15)	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:cell wall, plant-type cell wall;BOPMFA	O.I.	C.G.	H.G.
38.5	99.8	95.1	At3g07410	819929	AtRABA5b (Arabidopsis Rab GTPase homolog A5b)	F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:plasma membrane;MOFPBVA	O.I.	C.G.	H.G.
38.5	99.8	13.8	At1g02250	839390	anac005 (Arabidopsis NAC domain containing protein 5)	F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P	O.I.	C.G.	H.G.
38.0	99.8	21.8	At2g01740	814704	pentatricopeptide (PPR) repeat-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBA	O.I.	C.G.	H.G.
37.8	99.8	171.7	At3g54260	824593	unknown protein	F:unknown;P:biological_process unknown;C:endomembrane system;PM	O.I.	C.G.	H.G.
37.7	99.7	174.4	At5g46700	834713	TRN2 (TORNADO 2)	Encodes a transmembrane protein of the tetraspanin (TET) family, one of 17 members found in Arabidopsis. Double mutant analysis showed that TRN1 and TRN2 act in the same pathway. Required for the maintenance of both the radial pattern of tissue differentiation in the root and for the subsequent circumferential pattern within the epidermis.	O.I.	C.G.	H.G.
37.5	99.7	51.2	At3g18610	821392	ATRANGAP1 (RAN GTPASE-ACTIVATING PROTEIN 1)	F:nucleotide binding, nucleic acid binding;P:unknown;C:unknown;MOFBPVA	O.I.	C.G.	H.G.
37.3	99.7	158.1	At2g27840	817331	HDT4	Belongs to the plant specific HD2 type proteins; similar to nucleolar Zea mays histone deacetylase; HD2-p39	O.I.	C.G.	H.G.
37.2	99.7	46.6	At4g22960	828395	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPB	O.I.	C.G.	H.G.
36.7	99.7	14.5	At5g03090	831803	unknown protein	F:molecular_function unknown;P:response to jasmonic acid stimulus;C:cellular_component unknown;P	O.I.	C.G.	H.G.
36.4	99.7	12.4	At2g47860	819398	phototropic-responsive NPH3 family protein	F:protein binding, signal transducer activity;P:response to light stimulus;C:plasma membrane;P	O.I.	C.G.	H.G.
36.0	99.7	112.4	At2g15690	816062	pentatricopeptide (PPR) repeat-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFBVA	O.I.	C.G.	H.G.
35.7	99.7	45.6	At1g51580	841583	KH domain-containing protein	F:RNA binding, nucleic acid binding;P:unknown;C:unknown;MPFOBVA	O.I.	C.G.	H.G.
35.4	99.7	95.8	At3g16810	820934	APUM24 (Arabidopsis Pumilio 24)	F:RNA binding, binding;P:unknown;C:nucleolus;MFPOB	O.I.	C.G.	H.G.
35.2	99.7	12.7	At3g27620	822384	AOX1C	encodes an isoform of alternate oxidase. expressed in all tissues examined and expression is not induced by antimycin A, an inhibitor of complex III in the mitochondrial respiratory chain.	O.I.	C.G.	H.G.

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GSM ID	GSM134202
Assay name	Murray_3-1_D1-GROWTH_Rep1_ATH1
GSE experiment	GSE5750: Growth of suspension-cultured cells

Microarray experiments to specifically-expressed genes

GSM ID GSM134202 Assay name Murray_3-1_D1-GROWTH_Rep1_ATH1 GSE experiment GSE5750: Growth of suspension-cultured cells

GSM ID GSM134202

Assay name Murray_3-1_D1-GROWTH_Rep1_ATH1

GSE experiment GSE5750: Growth of suspension-cultured cells