Microarray experiments to specifically-expressed genes

GSM ID GSM133981
Assay name Birnbaum_1-11_StageII-4_Rep4_ATH1
GSE experiment GSE5749: A gene expression map of the Arabidopsis root

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
207.3100.0550.7At2g33790817946AGP30 (ARABINOGALACTAN PROTEIN30)pollen Ole e 1 allergen protein containing 14.6% proline residues, similar to arabinogalactan protein (Daucus carota) GI:11322245, SP:Q03211 Pistil-specific extensin-like protein precursor (PELP) {Nicotiana tabacum}; contains Pfam profile PF01190: Pollen proteins Ole e I familyO.I.C.G.H.G.
124.299.974.3At5g51500835224pectinesterase family proteinF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMOO.I.C.G.H.G.
123.099.9195.2At1g63050842608membrane bound O-acyl transferase (MBOAT) family proteinF:acyltransferase activity;P:biological_process unknown;C:endomembrane system, membrane;MFOBPO.I.C.G.H.G.
96.199.941.3At5g62330836354-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
69.599.9149.7At4g03190828045GRH1 (GRR1-LIKE PROTEIN 1)Encodes an F box protein belonging to the TIR1 subfamily. This protein forms SCF complexes with ASK1 and CUL1 and interacts with Aux/IAA proteins in an auxin-dependent manner. It also has sequence similarity to the yeast protein GRR1, which is involved in glucose repression.O.I.C.G.H.G.
68.399.963.8At1g31950840085terpene synthase/cyclase family proteinF:lyase activity, magnesium ion binding;P:metabolic process;C:membrane;POO.I.C.G.H.G.
68.299.957.6At3g23470821928cyclopropane-fatty-acyl-phospholipid synthaseF:cyclopropane-fatty-acyl-phospholipid synthase activity;P:lipid biosynthetic process;C:endomembrane system;OBFPAMO.I.C.G.H.G.
50.399.877.1At2g35190818086NPSN11 (NOVEL PLANT SNARE 11)plant-specific SNARE located in cell plate of dividing cells. cofractionates with the cytokinesis-specific syntaxin, KNOLLE, which is required for the formation of the cell plate.O.I.C.G.H.G.
47.099.836.0At2g43880818992polygalacturonase, putative / pectinase, putativeF:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMAVO.I.C.G.H.G.
41.799.818.3At3g10660820235CPK2 (CALMODULIN-DOMAIN PROTEIN KINASE CDPK ISOFORM 2)predicted to encode calcium-dependent protein kinase and is localized to the ER. Protein is myristoylated in a cell-free extract. Changing the proposed myristoylated site, G residue in the amino terminal, to A prevented the meristoylation . The G to A mutation decreased AtCPK2 membrane association by approximately 50%.O.I.C.G.H.G.
41.699.8185.2At5g62340836355invertase/pectin methylesterase inhibitor family proteinF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
37.999.837.1At3g01220821232ATHB20 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 20)Encodes a homeodomain leucine zipper class I (HD-Zip I) protein, its expression is auxin-inducible and dependent on MP gene activity.O.I.C.G.H.G.
34.199.714.5At1g26700839211MLO14 (MILDEW RESISTANCE LOCUS O 14)A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO14 belongs to the clade I, with AtMLO4 and AtMLO11. The gene is expressed during early seedling growth, in developing primary root, and particularly in root tips of 10-day old seedlings; it was not expressed in leaves or flowers, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s).O.I.C.G.H.G.
33.799.7167.5At1g74030843741enolase, putativeF:phosphopyruvate hydratase activity;P:in 12 processes;C:phosphopyruvate hydratase complex, chloroplast;OBMFAPO.I.C.G.H.G.
32.599.793.9At5g52180835294unknown proteinF:unknown;P:unknown;C:endomembrane system;MPOO.I.C.G.H.G.
30.999.737.5At4g28650828983leucine-rich repeat transmembrane protein kinase, putativeF:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
30.899.7144.0At2g41800818779-F:molecular_function unknown;P:biological_process unknown;C:cell wall, plant-type cell wall;PO.I.C.G.H.G.
27.099.7306.8At1g58270842196ZW9ZW9 mRNA, complete cdsO.I.C.G.H.G.
26.699.750.6At3g54770824642RNA recognition motif (RRM)-containing proteinF:RNA binding, nucleotide binding, nucleic acid binding;P:unknown;C:cellular_component unknown;MPFOBO.I.C.G.H.G.
26.399.723.9At3g62280825401carboxylesterase/ hydrolase, acting on ester bondsF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOMO.I.C.G.H.G.
26.099.717.0At3g24210822007ankyrin repeat family proteinF:protein binding;P:biological_process unknown;C:cellular_component unknown;MPOBFO.I.C.G.H.G.
24.899.6125.7At1g45130841080BGAL5 (beta-galactosidase 5)F:cation binding, beta-galactosidase activity, catalytic activity;P:lactose catabolic process, using glucoside 3-dehydrogenase, carbohydrate metabolic process, lactose catabolic process via UDP-galactose, lactose catabolic process;C:endomembrane system, beta-galactosidase complex;BPMFOAO.I.C.G.H.G.
24.799.633.9At1g19710838559glycosyl transferase family 1 proteinF:transferase activity, transferring glycosyl groups;P:biosynthetic process;C:Golgi apparatus;BOAMPFO.I.C.G.H.G.
24.699.619.8At3g63470825522scpl40 (serine carboxypeptidase-like 40)F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PFMOBO.I.C.G.H.G.
23.599.6129.1At5g11340831005GCN5-related N-acetyltransferase (GNAT) family proteinF:N-acetyltransferase activity;P:metabolic process;C:cellular_component unknown;BOMFAPO.I.C.G.H.G.
23.599.667.8At2g01470814675STL2P (SEC12P-LIKE 2 PROTEIN)Sec12p-like protein (GTP exchange protein) that functionally complements yeast sec12 null mutant. Protein is localized to the ER.O.I.C.G.H.G.
23.599.67.9At1g60790842373unknown proteinF:unknown;P:biological_process unknown;C:unknown;PMO.I.C.G.H.G.
23.399.651.9At4g39390830094NST-K1 (NUCLEOTIDE SUGAR TRANSPORTER-KT 1)Encodes a golgi localized nucleotide sugar transporter.O.I.C.G.H.G.
23.299.6169.6At1g09330837454unknown proteinF:molecular_function unknown;P:biological_process unknown;C:integral to membrane;MFOPO.I.C.G.H.G.
23.099.694.3At1g16000838170unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
22.699.6106.1At5g56360835736calmodulin-binding proteinF:calmodulin binding;P:unknown;C:endomembrane system;MOBFPVAO.I.C.G.H.G.
22.599.6290.9At1g62660842563beta-fructosidase (BFRUCT3) / beta-fructofuranosidase / invertase, vacuolarF:hydrolase activity, hydrolyzing O-glycosyl compounds;P:sucrose catabolic process, using beta-fructofuranosidase, carbohydrate metabolic process;C:vacuole;BPFOMAO.I.C.G.H.G.
22.099.616.6At5g15150831367ATHB-3 (ARABIDOPSIS THALIANA HOMEOBOX 3)homeobox-containing gene with an unusual feature: a leucine zipper motif adjacent to the carboxyl-terminal of the homeodomain structure. This gene is expressed primarily in the cortex of the root and the stem.O.I.C.G.H.G.
21.699.6113.0At1g75780843911TUB1beta tubulin gene downregulated by phytochrome A (phyA)-mediated far-red light high-irradiance and the phytochrome B (phyB)-mediated red light high-irradiance responsesO.I.C.G.H.G.
21.399.6155.5At2g42570818857unknown proteinF:unknown;P:biological_process unknown;C:vacuole;PO.I.C.G.H.G.
21.399.650.3At3g01780821081TPLATEEncodes TPLATE, a cytokinesis protein targeted to the cell plate. Functions in vesicle-trafficking events required for site-specific cell wall modifications during pollen germination and for anchoring of the cell plate to the mother wall at the correct cortical position.O.I.C.G.H.G.
21.299.612.4At1g05530837055UGT75B2 (UDP-GLUCOSYL TRANSFERASE 75B2)Encodes a protein with glucosyltransferase activity with high sequence homology to UGT1 (AT1G05560). It belongs to an UGT subfamily that binds UDP-glucose but not UDP-glucuronate, UDP-galactose, or UDP-rhamnose as the glycosyl donor. UGT2 was shown to be able to use abscisic acid as glycosylation substrate in the presence of UDP-glucose.O.I.C.G.H.G.
20.999.632.7At4g30420829165nodulin MtN21 family proteinF:molecular_function unknown;P:biological_process unknown;C:membrane;BOPAMO.I.C.G.H.G.
20.899.6122.5At5g65810836710unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
20.499.651.9At4g29690829090type I phosphodiesterase/nucleotide pyrophosphatase family proteinF:hydrolase activity, catalytic activity;P:metabolic process, nucleotide metabolic process;C:endomembrane system;MBOFPAVO.I.C.G.H.G.
19.799.681.1At3g44320823557NIT3 (NITRILASE 3)This enzyme catalyzes the hydrolysis of indole-3-acetonitrile (IAN) to indole-3-acetic acid (IAA) (EC 3.5.5.1) and IAN to indole-3-acetamide (IAM) at lower levels. It is the only one of the four Arabidopsis nitrilases whose mRNA levels are strongly induced when plants experience sulphur deprivation. This enzyme likely participates in other non-auxin-related metabolic pathways.O.I.C.G.H.G.
19.499.640.1At5g48110834863terpene synthase/cyclase family proteinF:lyase activity, magnesium ion binding;P:metabolic process;C:chloroplast;PMOO.I.C.G.H.G.
19.299.653.9At2g25160817054CYP82F1member of CYP82FO.I.C.G.H.G.
19.199.6104.5At5g38630833853ACYB-1Encodes for cytochrome b561.O.I.C.G.H.G.
19.199.648.8At1g48230841243phosphate translocator-relatedF:organic anion transmembrane transporter activity;P:unknown;C:endomembrane system;PMFOBO.I.C.G.H.G.
19.199.615.4At1g64920842800glycosyltransferase family proteinF:transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBFOO.I.C.G.H.G.
18.999.5134.9At3g17940820642aldose 1-epimerase family proteinF:isomerase activity, carbohydrate binding, aldose 1-epimerase activity, catalytic activity;P:galactose metabolic process, hexose metabolic process, carbohydrate metabolic process;C:cellular_component unknown;BOMFPAO.I.C.G.H.G.
18.899.5127.7At1g19360838519-F:unknown;P:unknown;C:endoplasmic reticulum;POO.I.C.G.H.G.
18.799.518.1At5g56320835731ATEXPA14 (ARABIDOPSIS THALIANA EXPANSIN A14)member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)O.I.C.G.H.G.
18.799.512.4At2g24400816976auxin-responsive protein, putative / small auxin up RNA (SAUR_D)F:calmodulin binding;P:response to auxin stimulus;C:cellular_component unknown;POO.I.C.G.H.G.
18.599.5187.1At3g03160821066unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
18.299.5169.2At2g17420816248NTRA (NADPH-DEPENDENT THIOREDOXIN REDUCTASE A)NADPH-dependent thioredoxin reductase, major cytosolic isoformO.I.C.G.H.G.
17.899.523.6At5g25830832652zinc finger (GATA type) family proteinF:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus;PFOMO.I.C.G.H.G.
17.299.5111.3At1g476253767388-pseudogene of seven transmembrane domain proteinO.I.C.G.H.G.
17.299.514.8At5g50390835107pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:chloroplast;POMFO.I.C.G.H.G.
16.999.5123.2At3g09300820086ORP3B (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 3B)F:oxysterol binding;P:steroid metabolic process;C:unknown;MFOPO.I.C.G.H.G.
16.999.527.6At1g23060838914unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;MPOBFVO.I.C.G.H.G.
16.699.5135.1At5g48900834948pectate lyase family proteinF:lyase activity, pectate lyase activity;P:unknown;C:endomembrane system;PBFOO.I.C.G.H.G.
16.499.539.1At2g44740819082CYCP4F:cyclin-dependent protein kinase activity;P:regulation of cell cycle;C:unknown;FOMPBO.I.C.G.H.G.
16.499.522.8At1g68150843143WRKY9member of WRKY Transcription Factor; Group II-bO.I.C.G.H.G.
16.299.5403.0At2g22170816751lipid-associated family proteinF:molecular_function unknown;P:biological_process unknown;C:thylakoid, chloroplast, membrane;PMOO.I.C.G.H.G.
16.199.583.3At2g37250818302ADK (ADENOSINE KINASE)encodes adenylate kinase that is located in the chloroplast involved in the coordination of metabolism and growthO.I.C.G.H.G.
16.199.578.1At5g42420834248transporter-relatedF:unknown;P:unknown;C:membrane;PMFOBO.I.C.G.H.G.
16.199.529.0At5g18070831926DRT101 (DNA-DAMAGE-REPAIR/TOLERATION 101)encodes a novel protein involved in DNA repair from UV damage. Isolated by functional complementation of E. coli UV-sensitive mutants (UVR genes).O.I.C.G.H.G.
16.199.520.5At5g14020831250-F:unknown;P:N-terminal protein myristoylation;C:vacuole;PO.I.C.G.H.G.
16.099.5264.3At5g66680836801DGL1Encodes a protein ortholog of human SOT48 or yeast WBP1, an essential protein subunit of the oligosaccharyltransferase (OST) complex, which is responsible for the transfer in the ER of the N-linked glycan precursor onto Asn residues of candidate proteins.O.I.C.G.H.G.
16.099.592.1At2g34300817991dehydration-responsive protein-relatedF:unknown;P:biological_process unknown;C:Golgi apparatus;OMBFPVAO.I.C.G.H.G.
15.799.585.2At3g57010824868strictosidine synthase family proteinF:strictosidine synthase activity;P:alkaloid biosynthetic process, biosynthetic process;C:endoplasmic reticulum;PMBOAO.I.C.G.H.G.
15.799.545.9At1g44835841048YbaK/prolyl-tRNA synthetase family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOMPFO.I.C.G.H.G.
15.799.529.1At2g41810818780-F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PBO.I.C.G.H.G.
15.699.555.6At3g52940824460FK (FACKEL)Encodes a sterol C-14 reductase required for cell division and expansion and is involved in proper organization of the embryo.O.I.C.G.H.G.
15.699.513.3At1g70950843433-F:molecular_function unknown;P:biological_process unknown;C:unknown;MOPBFVO.I.C.G.H.G.
15.499.5128.8At3g05910819760pectinacetylesterase, putativeF:carboxylesterase activity;P:biological_process unknown;C:endomembrane system;PMOBO.I.C.G.H.G.
15.499.578.4At1g20190838608ATEXPA11 (ARABIDOPSIS THALIANA EXPANSIN 11)member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)O.I.C.G.H.G.
15.399.4192.8At5g11560831028catalyticF:catalytic activity;P:unknown;C:endoplasmic reticulum, plasma membrane, vacuole;MFOBPAO.I.C.G.H.G.
15.399.463.8At5g11980831071conserved oligomeric Golgi complex component-related / COG complex component-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPO.I.C.G.H.G.
15.399.439.1At1g71940843525-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOMPFAO.I.C.G.H.G.
15.299.447.3At2g20515816573unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
15.299.445.5At5g53340835415galactosyltransferase family proteinF:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:protein amino acid glycosylation;C:membrane;PMOO.I.C.G.H.G.
15.099.464.4At1g22360838843AtUGT85A2 (UDP-glucosyl transferase 85A2)F:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups, glucuronosyltransferase activity;P:metabolic process;C:cellular_component unknown;PMVBOFO.I.C.G.H.G.
15.099.460.5At1g57590842135carboxylesteraseF:carboxylesterase activity;P:biological_process unknown;C:unknown;PMOBO.I.C.G.H.G.
14.799.463.7At4g22930828392PYR4 (PYRIMIDIN 4)Encodes dihydroorotase (PYR4).O.I.C.G.H.G.
14.799.424.3At5g62500836370ATEB1B (END BINDING PROTEIN 1B)encodes a homolog of animal microtubule-end-binding protein. There are two other members of this family. EB1 forms foci at regions where the minus ends of microtubules are gathered during mitosis and early cytokinesis.O.I.C.G.H.G.
14.799.412.0At5g65420836667CYCD4Encodes a D-type cyclin CYCD4;1 that physically interacts with CDC2A and is expressed during vascular tissue development, embryogenesis, and formation of lateral root primordia. Its expression is upregulated early during germination.Involved in stomatal cell lineage proliferation in the hypocotyl.O.I.C.G.H.G.
14.599.430.8At5g57700835877BNR/Asp-box repeat family proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;BOPFAO.I.C.G.H.G.
14.599.430.6At5g65930836723ZWI (ZWICHEL)encodes a novel member of the kinesin superfamily of motor proteins. recessive mutations have reduced number of trichome branches.O.I.C.G.H.G.
14.599.45.5At4g094803770265transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
14.499.4266.8At4g27500828859PPI1 (PROTON PUMP INTERACTOR 1)interacts with H+-ATPase, and regulates its activityO.I.C.G.H.G.
14.499.4247.6At5g28050832875cytidine/deoxycytidylate deaminase family proteinF:hydrolase activity, zinc ion binding, catalytic activity;P:pyrimidine ribonucleotide metabolic process, pyrimidine deoxyribonucleoside interconversion, deoxyribose phosphate metabolic process, anaerobic respiration;C:cellular_component unknown;BOFMPAO.I.C.G.H.G.
14.399.4107.0At5g39320833928UDP-glucose 6-dehydrogenase, putativeF:in 6 functions;P:metabolic process;C:cytosol, nucleus;OBAMPFVO.I.C.G.H.G.
14.399.476.0At2g29390817488SMO2-2 (STEROL 4-ALPHA-METHYL-OXIDASE 2-2)Encodes a sterol 4-alpha-methyl-oxidase, specifically a 4-alpha-methyl-delta-7-sterol-4alpha-methyl-oxidase.O.I.C.G.H.G.
14.299.4297.0At2g21160816651translocon-associated protein alpha (TRAP alpha) family proteinF:unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, endoplasmic reticulum, plasma membrane, vacuole;MPFOO.I.C.G.H.G.
14.299.439.4At5g13520831196peptidase M1 family proteinF:metallopeptidase activity, binding, zinc ion binding;P:proteolysis, leukotriene biosynthetic process;C:cellular_component unknown;BMOFAPO.I.C.G.H.G.
14.199.422.1At3g53210824487nodulin MtN21 family proteinF:unknown;P:unknown;C:membrane;OBPAMO.I.C.G.H.G.
14.099.4335.0At1g097808375072,3-biphosphoglycerate-independent phosphoglycerate mutase, putative / phosphoglyceromutase, putativeF:manganese ion binding, phosphoglycerate mutase activity, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity, catalytic activity, metal ion binding;P:response to cadmium ion, response to cold;C:cytosol, mitochondrial envelope, chloroplast, plasma membrane;BOPFAMO.I.C.G.H.G.
14.099.4155.5At3g13930820606dihydrolipoamide S-acetyltransferase, putativeF:dihydrolipoyllysine-residue acetyltransferase activity, protein binding, acyltransferase activity;P:pyruvate metabolic process, metabolic process;C:mitochondrion, chloroplast, chloroplast envelope;OBMFPAO.I.C.G.H.G.
13.999.4152.4At1g05260837028RCI3 (RARE COLD INDUCIBLE GENE 3)Encodes a cold-inducible cationic peroxidase that is involved in the stress response. In response to low temperature, RCI3 transcripts accumulate in the aerial part and in roots of etiolated seedlings but only in roots of light-grown seedlings.O.I.C.G.H.G.
13.999.446.0At1g51420841567SPP1 (SUCROSE-PHOSPHATASE 1)F:phosphatase activity, magnesium ion binding, sucrose-phosphatase activity, catalytic activity;P:sucrose biosynthetic process, metabolic process;C:plasma membrane;BPOO.I.C.G.H.G.
13.899.4356.1At2g3206081776640S ribosomal protein S12 (RPS12C)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, cytosolic ribosome, nucleus;MOAFPO.I.C.G.H.G.
13.899.4103.0At1g27435839634unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.



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