Microarray experiments to specifically-expressed genes

GSM ID GSM133980
Assay name Birnbaum_1-10_StageII-3_Rep3_ATH1
GSE experiment GSE5749: A gene expression map of the Arabidopsis root

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
171.8100.0501.3At2g33790817946AGP30 (ARABINOGALACTAN PROTEIN30)pollen Ole e 1 allergen protein containing 14.6% proline residues, similar to arabinogalactan protein (Daucus carota) GI:11322245, SP:Q03211 Pistil-specific extensin-like protein precursor (PELP) {Nicotiana tabacum}; contains Pfam profile PF01190: Pollen proteins Ole e I familyO.I.C.G.H.G.
105.199.968.4At5g51500835224pectinesterase family proteinF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMOO.I.C.G.H.G.
96.899.9173.2At1g63050842608membrane bound O-acyl transferase (MBOAT) family proteinF:acyltransferase activity;P:biological_process unknown;C:endomembrane system, membrane;MFOBPO.I.C.G.H.G.
68.199.957.6At3g23470821928cyclopropane-fatty-acyl-phospholipid synthaseF:cyclopropane-fatty-acyl-phospholipid synthase activity;P:lipid biosynthetic process;C:endomembrane system;OBFPAMO.I.C.G.H.G.
66.599.8146.4At4g03190828045GRH1 (GRR1-LIKE PROTEIN 1)Encodes an F box protein belonging to the TIR1 subfamily. This protein forms SCF complexes with ASK1 and CUL1 and interacts with Aux/IAA proteins in an auxin-dependent manner. It also has sequence similarity to the yeast protein GRR1, which is involved in glucose repression.O.I.C.G.H.G.
65.499.862.4At1g31950840085terpene synthase/cyclase family proteinF:lyase activity, magnesium ion binding;P:metabolic process;C:membrane;POO.I.C.G.H.G.
51.299.837.6At2g43880818992polygalacturonase, putative / pectinase, putativeF:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMAVO.I.C.G.H.G.
35.999.7172.7At1g74030843741enolase, putativeF:phosphopyruvate hydratase activity;P:in 12 processes;C:phosphopyruvate hydratase complex, chloroplast;OBMFAPO.I.C.G.H.G.
32.599.752.0At5g48110834863terpene synthase/cyclase family proteinF:lyase activity, magnesium ion binding;P:metabolic process;C:chloroplast;PMOO.I.C.G.H.G.
30.799.760.2At2g35190818086NPSN11 (NOVEL PLANT SNARE 11)plant-specific SNARE located in cell plate of dividing cells. cofractionates with the cytokinesis-specific syntaxin, KNOLLE, which is required for the formation of the cell plate.O.I.C.G.H.G.
30.799.733.4At3g01220821232ATHB20 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 20)Encodes a homeodomain leucine zipper class I (HD-Zip I) protein, its expression is auxin-inducible and dependent on MP gene activity.O.I.C.G.H.G.
29.499.713.5At1g26700839211MLO14 (MILDEW RESISTANCE LOCUS O 14)A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO14 belongs to the clade I, with AtMLO4 and AtMLO11. The gene is expressed during early seedling growth, in developing primary root, and particularly in root tips of 10-day old seedlings; it was not expressed in leaves or flowers, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s).O.I.C.G.H.G.
29.299.725.2At3g62280825401carboxylesterase/ hydrolase, acting on ester bondsF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOMO.I.C.G.H.G.
28.299.783.1At1g57590842135carboxylesteraseF:carboxylesterase activity;P:biological_process unknown;C:unknown;PMOBO.I.C.G.H.G.
26.799.784.6At3g18000821324XPL1 (XIPOTL 1)Arabidopsis thaliana N-methyltransferase-like protein mRNA.O.I.C.G.H.G.
26.799.774.0At5g57090835813EIR1 (ETHYLENE INSENSITIVE ROOT 1)Encodes an auxin efflux carrier that is similar to bacterial membrane transporters. Root-specific role in the transport of auxin. Acts downstream of CTR1 and ethylene biosynthesis, in the same pathway as EIN2 and AUX1, and independent from EIN3 and EIN5/AIN1 pathway. In the root, the protein localizes apically in epidermal and lateral root cap cells and predominantly basally in cortical cells. Functions may be regulated by phosphorylation status. EIR1 expression is induced by brassinolide treatment in the brassinosteroid-insensitive br1 mutant. Gravistimulation resulted in asymmetric PIN2 distribution, with more protein degraded at the upper side of the gravistimulated root. Protein turnover is affected by the proteasome and by endosomal cycling. Plasma membrane-localized PIN proteins mediate a saturable efflux of auxin. PINs mediate auxin efflux from mammalian and yeast cells without needing additional plant-specific factors. The action of PINs in auxin efflux is distinct from PGPs, rate-limiting, specific to auxins and sensitive to auxin transport inhibitors. Membrane sterol composition is essential for the acquisition of PIN2 polarity.O.I.C.G.H.G.
26.799.714.6At3g10660820235CPK2 (CALMODULIN-DOMAIN PROTEIN KINASE CDPK ISOFORM 2)predicted to encode calcium-dependent protein kinase and is localized to the ER. Protein is myristoylated in a cell-free extract. Changing the proposed myristoylated site, G residue in the amino terminal, to A prevented the meristoylation . The G to A mutation decreased AtCPK2 membrane association by approximately 50%.O.I.C.G.H.G.
26.599.7133.5At2g41800818779-F:molecular_function unknown;P:biological_process unknown;C:cell wall, plant-type cell wall;PO.I.C.G.H.G.
25.599.7127.5At1g45130841080BGAL5 (beta-galactosidase 5)F:cation binding, beta-galactosidase activity, catalytic activity;P:lactose catabolic process, using glucoside 3-dehydrogenase, carbohydrate metabolic process, lactose catabolic process via UDP-galactose, lactose catabolic process;C:endomembrane system, beta-galactosidase complex;BPMFOAO.I.C.G.H.G.
24.399.633.3At4g28650828983leucine-rich repeat transmembrane protein kinase, putativeF:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
23.999.680.5At5g52180835294unknown proteinF:unknown;P:unknown;C:endomembrane system;MPOO.I.C.G.H.G.
23.299.6169.8At1g09330837454unknown proteinF:molecular_function unknown;P:biological_process unknown;C:integral to membrane;MFOPO.I.C.G.H.G.
23.099.650.2At5g13520831196peptidase M1 family proteinF:metallopeptidase activity, binding, zinc ion binding;P:proteolysis, leukotriene biosynthetic process;C:cellular_component unknown;BMOFAPO.I.C.G.H.G.
22.799.651.2At4g39390830094NST-K1 (NUCLEOTIDE SUGAR TRANSPORTER-KT 1)Encodes a golgi localized nucleotide sugar transporter.O.I.C.G.H.G.
22.399.619.7At5g56320835731ATEXPA14 (ARABIDOPSIS THALIANA EXPANSIN A14)member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)O.I.C.G.H.G.
21.599.610.8At5g52950835372unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POBMFO.I.C.G.H.G.
21.099.6105.6At2g34300817991dehydration-responsive protein-relatedF:unknown;P:biological_process unknown;C:Golgi apparatus;OMBFPVAO.I.C.G.H.G.
21.099.621.6At2g38840818468guanylate-binding family proteinF:GTP binding, GTPase activity;P:immune response;C:endomembrane system;MOPFBO.I.C.G.H.G.
20.999.636.4At5g22790832342RER1 (RETICULATA-RELATED 1)F:molecular_function unknown;P:biological_process unknown;C:mitochondrion, plastid, chloroplast inner membrane, chloroplast envelope;MOBPFVAO.I.C.G.H.G.
20.799.650.9At1g48230841243phosphate translocator-relatedF:organic anion transmembrane transporter activity;P:unknown;C:endomembrane system;PMFOBO.I.C.G.H.G.
20.599.679.4At1g73940843731unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
20.599.649.4At3g01780821081TPLATEEncodes TPLATE, a cytokinesis protein targeted to the cell plate. Functions in vesicle-trafficking events required for site-specific cell wall modifications during pollen germination and for anchoring of the cell plate to the mother wall at the correct cortical position.O.I.C.G.H.G.
18.799.5119.9At1g27435839634unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
18.699.560.3At2g01470814675STL2P (SEC12P-LIKE 2 PROTEIN)Sec12p-like protein (GTP exchange protein) that functionally complements yeast sec12 null mutant. Protein is localized to the ER.O.I.C.G.H.G.
18.299.514.3At1g70950843433-F:molecular_function unknown;P:biological_process unknown;C:unknown;MOPBFVO.I.C.G.H.G.
18.099.567.0At4g29680829089type I phosphodiesterase/nucleotide pyrophosphatase family proteinF:hydrolase activity, catalytic activity;P:metabolic process, nucleotide metabolic process;C:vacuole;MBOFPAVO.I.C.G.H.G.
17.599.5111.4At5g11340831005GCN5-related N-acetyltransferase (GNAT) family proteinF:N-acetyltransferase activity;P:metabolic process;C:cellular_component unknown;BOMFAPO.I.C.G.H.G.
17.399.586.3At2g37250818302ADK (ADENOSINE KINASE)encodes adenylate kinase that is located in the chloroplast involved in the coordination of metabolism and growthO.I.C.G.H.G.
17.299.513.9At3g24210822007ankyrin repeat family proteinF:protein binding;P:biological_process unknown;C:cellular_component unknown;MPOBFO.I.C.G.H.G.
17.199.5238.8At3g57150824882NAP57 (Arabidopsis thaliana homologue of NAP57)Encodes a putative pseudouridine synthase (NAP57).O.I.C.G.H.G.
16.799.5144.6At3g54960824661ATPDIL1-3 (PDI-LIKE 1-3)Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. Transcript levels for this gene are up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin). Neither AtIRE1-2 nor AtbZIP60 appear to be required for this response.O.I.C.G.H.G.
16.699.5133.6At3g05910819760pectinacetylesterase, putativeF:carboxylesterase activity;P:biological_process unknown;C:endomembrane system;PMOBO.I.C.G.H.G.
16.699.540.0At3g54770824642RNA recognition motif (RRM)-containing proteinF:RNA binding, nucleotide binding, nucleic acid binding;P:unknown;C:cellular_component unknown;MPFOBO.I.C.G.H.G.
16.599.5108.9At5g65810836710unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
16.499.5125.9At3g17940820642aldose 1-epimerase family proteinF:isomerase activity, carbohydrate binding, aldose 1-epimerase activity, catalytic activity;P:galactose metabolic process, hexose metabolic process, carbohydrate metabolic process;C:cellular_component unknown;BOMFPAO.I.C.G.H.G.
16.499.516.2At3g63470825522scpl40 (serine carboxypeptidase-like 40)F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PFMOBO.I.C.G.H.G.
16.399.578.6At5g42420834248transporter-relatedF:unknown;P:unknown;C:membrane;PMFOBO.I.C.G.H.G.
16.199.5118.1At1g19360838519-F:unknown;P:unknown;C:endoplasmic reticulum;POO.I.C.G.H.G.
16.099.5399.6At2g22170816751lipid-associated family proteinF:molecular_function unknown;P:biological_process unknown;C:thylakoid, chloroplast, membrane;PMOO.I.C.G.H.G.
15.999.547.9At2g47980819410SCC3 (SISTER-CHROMATID COHESION PROTEIN 3)Essential to the monopolar orientation of the kinetochores during meiosis.O.I.C.G.H.G.
15.999.522.3At5g25830832652zinc finger (GATA type) family proteinF:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus;PFOMO.I.C.G.H.G.
15.499.547.7At2g20515816573unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
15.399.450.1At4g31810829310enoyl-CoA hydratase/isomerase family proteinF:3-hydroxyisobutyryl-CoA hydrolase activity, catalytic activity;P:fatty acid beta-oxidation, metabolic process;C:mitochondrion;BOMFPAO.I.C.G.H.G.
15.199.472.5At1g09850837517XBCP3 (xylem bark cysteine peptidase 3)Arabidopsis thaliana papain-like cysteine peptidaseO.I.C.G.H.G.
15.099.486.5At5g56360835736calmodulin-binding proteinF:calmodulin binding;P:unknown;C:endomembrane system;MOBFPVAO.I.C.G.H.G.
14.999.426.6At1g62330842531unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
14.899.444.9At5g53340835415galactosyltransferase family proteinF:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:protein amino acid glycosylation;C:membrane;PMOO.I.C.G.H.G.
14.799.4342.9At1g097808375072,3-biphosphoglycerate-independent phosphoglycerate mutase, putative / phosphoglyceromutase, putativeF:manganese ion binding, phosphoglycerate mutase activity, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity, catalytic activity, metal ion binding;P:response to cadmium ion, response to cold;C:cytosol, mitochondrial envelope, chloroplast, plasma membrane;BOPFAMO.I.C.G.H.G.
14.699.473.9At3g43960823513cysteine proteinase, putativeF:cysteine-type peptidase activity, cysteine-type endopeptidase activity;P:proteolysis;C:anchored to membrane;MOPVBAFO.I.C.G.H.G.
14.599.4102.4At1g476253767388-pseudogene of seven transmembrane domain proteinO.I.C.G.H.G.
14.599.445.6At3g47930823948ATGLDH (L-GALACTONO-1,4-LACTONE DEHYDOROGENASE)L-Galactono-1,4-lactone dehydrogenase, catalyzes the final step of ascorbate biosynthesisO.I.C.G.H.G.
14.499.437.9At1g71940843525-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOMPFAO.I.C.G.H.G.
14.399.4186.5At5g11560831028catalyticF:catalytic activity;P:unknown;C:endoplasmic reticulum, plasma membrane, vacuole;MFOBPAO.I.C.G.H.G.
14.399.442.4At2g20810816611GAUT10 (GALACTURONOSYLTRANSFERASE 10)Encodes a protein with putative galacturonosyltransferase activity.O.I.C.G.H.G.
14.299.475.7At2g29390817488SMO2-2 (STEROL 4-ALPHA-METHYL-OXIDASE 2-2)Encodes a sterol 4-alpha-methyl-oxidase, specifically a 4-alpha-methyl-delta-7-sterol-4alpha-methyl-oxidase.O.I.C.G.H.G.
14.199.490.5At1g64880842796ribosomal protein S5 family proteinF:structural constituent of ribosome, RNA binding;P:translation;C:ribosome, Golgi apparatus, intracellular;OBMFAPVO.I.C.G.H.G.
14.199.413.4At5g50390835107pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:chloroplast;POMFO.I.C.G.H.G.
14.099.4192.9At1g04430839522dehydration-responsive protein-relatedF:unknown;P:biological_process unknown;C:Golgi apparatus, plasma membrane;PBOO.I.C.G.H.G.
13.899.4356.9At2g3206081776640S ribosomal protein S12 (RPS12C)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, cytosolic ribosome, nucleus;MOAFPO.I.C.G.H.G.
13.799.473.9At1g29310839805P-P-bond-hydrolysis-driven protein transmembrane transporterF:P-P-bond-hydrolysis-driven protein transmembrane transporter activity;P:protein secretion, protein transport;C:mitochondrion, plasma membrane, membrane;BOMAFPO.I.C.G.H.G.
13.499.4104.9At5g62340836355invertase/pectin methylesterase inhibitor family proteinF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
13.499.436.5At3g17430821007phosphate translocator-relatedF:organic anion transmembrane transporter activity;P:unknown;C:endomembrane system;PMFOBO.I.C.G.H.G.
13.299.459.2At5g11980831071conserved oligomeric Golgi complex component-related / COG complex component-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPO.I.C.G.H.G.
13.299.429.1At5g65930836723ZWI (ZWICHEL)encodes a novel member of the kinesin superfamily of motor proteins. recessive mutations have reduced number of trichome branches.O.I.C.G.H.G.
12.999.3220.3At1g62660842563beta-fructosidase (BFRUCT3) / beta-fructofuranosidase / invertase, vacuolarF:hydrolase activity, hydrolyzing O-glycosyl compounds;P:sucrose catabolic process, using beta-fructofuranosidase, carbohydrate metabolic process;C:vacuole;BPFOMAO.I.C.G.H.G.
12.999.3107.5At3g09300820086ORP3B (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 3B)F:oxysterol binding;P:steroid metabolic process;C:unknown;MFOPO.I.C.G.H.G.
12.999.368.9At3g27230822342-F:unknown;P:unknown;C:Golgi apparatus;PBO.I.C.G.H.G.
12.999.326.0At5g18070831926DRT101 (DNA-DAMAGE-REPAIR/TOLERATION 101)encodes a novel protein involved in DNA repair from UV damage. Isolated by functional complementation of E. coli UV-sensitive mutants (UVR genes).O.I.C.G.H.G.
12.999.318.3At5g14150831265unknown proteinF:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;PBOO.I.C.G.H.G.
12.799.3120.0At2g42570818857unknown proteinF:unknown;P:biological_process unknown;C:vacuole;PO.I.C.G.H.G.
12.699.3172.2At3g49720824134unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, Golgi apparatus, plasma membrane, membrane;PO.I.C.G.H.G.
12.699.3116.2At3g28740822506CYP81D1Encodes a member of the cytochrome p450 family. Expression is upregulated in response to cis-jasmonate treatment. Overexpression induces synthesis of volatile compounds that affect chemical ecology and insect interactions.O.I.C.G.H.G.
12.699.384.9At5g38630833853ACYB-1Encodes for cytochrome b561.O.I.C.G.H.G.
12.599.354.7At1g53290841763galactosyltransferase family proteinF:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:protein amino acid glycosylation;C:membrane;MPOBO.I.C.G.H.G.
12.599.339.4At5g16300831491-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPOO.I.C.G.H.G.
12.599.326.1At2g41810818780-F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PBO.I.C.G.H.G.
12.499.3122.6At3g19130821447ATRBP47B (RNA-binding protein 47B)F:RNA binding;P:unknown;C:unknown;MOPFBAVO.I.C.G.H.G.
12.499.390.3At5g13750831220ZIFL1 (ZINC INDUCED FACILITATOR-like 1)F:tetracycline:hydrogen antiporter activity;P:response to antibiotic, tetracycline transport;C:integral to membrane;BFOMAPO.I.C.G.H.G.
12.499.318.0At5g14020831250-F:unknown;P:N-terminal protein myristoylation;C:vacuole;PO.I.C.G.H.G.
12.399.3216.0At4g15910827273ATDI21 (ARABIDOPSIS THALIANA DROUGHT-INDUCED 21)encodes a gene whose transcript level in root and leaves increases to progressive drought stress. The transcript level is also affected by changes of endogenous or exogenous abscisic acid level. It appears to be a member of plant-specific gene family that includes late embryo-abundant and zinc- IAA-induced proteins in other plants.O.I.C.G.H.G.
12.099.340.2At1g44835841048YbaK/prolyl-tRNA synthetase family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOMPFO.I.C.G.H.G.
12.099.35.6At1g60790842373unknown proteinF:unknown;P:biological_process unknown;C:unknown;PMO.I.C.G.H.G.
11.999.357.4At1g22360838843AtUGT85A2 (UDP-glucosyl transferase 85A2)F:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups, glucuronosyltransferase activity;P:metabolic process;C:cellular_component unknown;PMVBOFO.I.C.G.H.G.
11.999.323.5At1g19710838559glycosyl transferase family 1 proteinF:transferase activity, transferring glycosyl groups;P:biosynthetic process;C:Golgi apparatus;BOAMPFO.I.C.G.H.G.
11.899.3505.3At4g31700829298RPS6 (RIBOSOMAL PROTEIN S6)Encodes a putative ribosomal protein S6 (rps6).O.I.C.G.H.G.
11.899.3149.2At3g03160821066unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
11.899.3113.7At5g48900834948pectate lyase family proteinF:lyase activity, pectate lyase activity;P:unknown;C:endomembrane system;PBFOO.I.C.G.H.G.
11.899.348.8At4g01660828127ATABC1 (ARABIDOPSIS THALIANA ABC TRANSPORTER 1)Encodes an ABC1-like protein, member of the ATH subfamily; putative ABC transporter; isolated by functional complementation of a yeast abc1 mutantO.I.C.G.H.G.
11.899.333.1At3g04080819563ATAPY1 (APYRASE 1)Encodes an enzyme with ATPase and ADPase activity (an apyrase) that when mutated in combination with ATAPY2 causes a complete inhibition of pollen germination.O.I.C.G.H.G.
11.899.319.4At1g68150843143WRKY9member of WRKY Transcription Factor; Group II-bO.I.C.G.H.G.



Back to the CoP portal site

Back to the KAGIANA project homepage