CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM133978

Assay name Birnbaum_1-8_StageII-1_Rep1_ATH1

GSE experiment GSE5749: A gene expression map of the Arabidopsis root

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
96.6 99.9 51.6 At2g43880 818992 polygalacturonase, putative / pectinase, putative F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMAV O.I. C.G. H.G.
78.1 99.9 338.0 At2g33790 817946 AGP30 (ARABINOGALACTAN PROTEIN30) pollen Ole e 1 allergen protein containing 14.6% proline residues, similar to arabinogalactan protein (Daucus carota) GI:11322245, SP:Q03211 Pistil-specific extensin-like protein precursor (PELP) {Nicotiana tabacum}; contains Pfam profile PF01190: Pollen proteins Ole e I family O.I. C.G. H.G.
71.2 99.9 58.9 At3g23470 821928 cyclopropane-fatty-acyl-phospholipid synthase F:cyclopropane-fatty-acyl-phospholipid synthase activity;P:lipid biosynthetic process;C:endomembrane system;OBFPAM O.I. C.G. H.G.
62.7 99.8 72.2 At5g48110 834863 terpene synthase/cyclase family protein F:lyase activity, magnesium ion binding;P:metabolic process;C:chloroplast;PMO O.I. C.G. H.G.
61.0 99.8 52.1 At5g51500 835224 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMO O.I. C.G. H.G.
44.6 99.8 119.9 At4g03190 828045 GRH1 (GRR1-LIKE PROTEIN 1) Encodes an F box protein belonging to the TIR1 subfamily. This protein forms SCF complexes with ASK1 and CUL1 and interacts with Aux/IAA proteins in an auxin-dependent manner. It also has sequence similarity to the yeast protein GRR1, which is involved in glucose repression. O.I. C.G. H.G.
43.9 99.8 78.9 At4g01630 827983 ATEXPA17 (ARABIDOPSIS THALIANA EXPANSIN A17) member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) O.I. C.G. H.G.
40.4 99.8 15.8 At1g26700 839211 MLO14 (MILDEW RESISTANCE LOCUS O 14) A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO14 belongs to the clade I, with AtMLO4 and AtMLO11. The gene is expressed during early seedling growth, in developing primary root, and particularly in root tips of 10-day old seedlings; it was not expressed in leaves or flowers, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s). O.I. C.G. H.G.
40.3 99.8 42.8 At4g28650 828983 leucine-rich repeat transmembrane protein kinase, putative F:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
39.8 99.8 47.3 At1g05650 837072 polygalacturonase, putative / pectinase, putative F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMAV O.I. C.G. H.G.
36.9 99.7 24.2 At3g63470 825522 scpl40 (serine carboxypeptidase-like 40) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PFMOB O.I. C.G. H.G.
36.7 99.7 46.8 At1g31950 840085 terpene synthase/cyclase family protein F:lyase activity, magnesium ion binding;P:metabolic process;C:membrane;PO O.I. C.G. H.G.
32.7 99.7 94.2 At5g52180 835294 unknown protein F:unknown;P:unknown;C:endomembrane system;MPO O.I. C.G. H.G.
32.5 99.7 56.0 At3g54770 824642 RNA recognition motif (RRM)-containing protein F:RNA binding, nucleotide binding, nucleic acid binding;P:unknown;C:cellular_component unknown;MPFOB O.I. C.G. H.G.
30.7 99.7 172.1 At3g17940 820642 aldose 1-epimerase family protein F:isomerase activity, carbohydrate binding, aldose 1-epimerase activity, catalytic activity;P:galactose metabolic process, hexose metabolic process, carbohydrate metabolic process;C:cellular_component unknown;BOMFPA O.I. C.G. H.G.
30.1 99.7 20.6 At5g43030 834318 DC1 domain-containing protein F:unknown;P:intracellular signaling cascade;C:cellular_component unknown;PMO O.I. C.G. H.G.
29.8 99.7 19.4 At5g15150 831367 ATHB-3 (ARABIDOPSIS THALIANA HOMEOBOX 3) homeobox-containing gene with an unusual feature: a leucine zipper motif adjacent to the carboxyl-terminal of the homeodomain structure. This gene is expressed primarily in the cortex of the root and the stem. O.I. C.G. H.G.
29.3 99.7 68.6 At5g01320 830867 pyruvate decarboxylase, putative F:in 6 functions;P:unknown;C:cellular_component unknown;BOFPAMV O.I. C.G. H.G.
28.9 99.7 57.7 At4g39390 830094 NST-K1 (NUCLEOTIDE SUGAR TRANSPORTER-KT 1) Encodes a golgi localized nucleotide sugar transporter. O.I. C.G. H.G.
27.9 99.7 74.3 At3g52940 824460 FK (FACKEL) Encodes a sterol C-14 reductase required for cell division and expansion and is involved in proper organization of the embryo. O.I. C.G. H.G.
27.1 99.7 106.2 At3g44330 823558 - F:unknown;P:protein processing;C:mitochondrion, endoplasmic reticulum, plasma membrane, vacuole;MOPAB O.I. C.G. H.G.
26.9 99.7 139.2 At5g65810 836710 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
26.7 99.7 205.0 At2g17420 816248 NTRA (NADPH-DEPENDENT THIOREDOXIN REDUCTASE A) NADPH-dependent thioredoxin reductase, major cytosolic isoform O.I. C.G. H.G.
26.4 99.7 96.1 At2g25810 817123 TIP4 F:water channel activity;P:transport;C:integral to membrane, membrane;BPMOFA O.I. C.G. H.G.
25.8 99.7 47.2 At1g76260 843959 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;MFPOB O.I. C.G. H.G.
25.6 99.7 30.5 At3g01220 821232 ATHB20 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 20) Encodes a homeodomain leucine zipper class I (HD-Zip I) protein, its expression is auxin-inducible and dependent on MP gene activity. O.I. C.G. H.G.
25.3 99.6 40.1 At5g22790 832342 RER1 (RETICULATA-RELATED 1) F:molecular_function unknown;P:biological_process unknown;C:mitochondrion, plastid, chloroplast inner membrane, chloroplast envelope;MOBPFVA O.I. C.G. H.G.
25.1 99.6 14.3 At2g24400 816976 auxin-responsive protein, putative / small auxin up RNA (SAUR_D) F:calmodulin binding;P:response to auxin stimulus;C:cellular_component unknown;PO O.I. C.G. H.G.
24.7 99.6 22.1 At5g10720 830938 AHK5 (ARABIDOPSIS HISTIDINE KINASE 5) member of Histidine Kinase O.I. C.G. H.G.
24.3 99.6 76.6 At2g17630 816270 phosphoserine aminotransferase, putative F:pyridoxal phosphate binding, transaminase activity, catalytic activity, O-phospho-L-serine:2-oxoglutarate aminotransferase activity;P:response to cadmium ion;C:chloroplast;BOMFPA O.I. C.G. H.G.
24.2 99.6 35.2 At4g30420 829165 nodulin MtN21 family protein F:molecular_function unknown;P:biological_process unknown;C:membrane;BOPAM O.I. C.G. H.G.
24.1 99.6 133.1 At2g25980 817139 jacalin lectin family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO O.I. C.G. H.G.
24.1 99.6 17.8 At1g73160 843647 glycosyl transferase family 1 protein F:transferase activity, transferring glycosyl groups;P:biosynthetic process;C:unknown;BOAFPM O.I. C.G. H.G.
23.9 99.6 172.9 At3g54960 824661 ATPDIL1-3 (PDI-LIKE 1-3) Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. Transcript levels for this gene are up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin). Neither AtIRE1-2 nor AtbZIP60 appear to be required for this response. O.I. C.G. H.G.
23.8 99.6 104.8 At3g57010 824868 strictosidine synthase family protein F:strictosidine synthase activity;P:alkaloid biosynthetic process, biosynthetic process;C:endoplasmic reticulum;PMBOA O.I. C.G. H.G.
23.8 99.6 75.6 At1g61580 842454 RPL3B (R-PROTEIN L3 B) F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome, membrane;BOMAPFV O.I. C.G. H.G.
23.3 99.6 61.7 At1g34020 840299 transporter-related F:unknown;P:unknown;C:plasma membrane, membrane;PMFOB O.I. C.G. H.G.
23.2 99.6 92.4 At3g27230 822342 - F:unknown;P:unknown;C:Golgi apparatus;PB O.I. C.G. H.G.
22.9 99.6 78.4 At4g33780 829520 - F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
22.7 99.6 92.5 At5g42420 834248 transporter-related F:unknown;P:unknown;C:membrane;PMFOB O.I. C.G. H.G.
22.4 99.6 119.6 At1g45130 841080 BGAL5 (beta-galactosidase 5) F:cation binding, beta-galactosidase activity, catalytic activity;P:lactose catabolic process, using glucoside 3-dehydrogenase, carbohydrate metabolic process, lactose catabolic process via UDP-galactose, lactose catabolic process;C:endomembrane system, beta-galactosidase complex;BPMFOA O.I. C.G. H.G.
22.4 99.6 109.2 At2g34300 817991 dehydration-responsive protein-related F:unknown;P:biological_process unknown;C:Golgi apparatus;OMBFPVA O.I. C.G. H.G.
22.2 99.6 34.7 At2g41810 818780 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PB O.I. C.G. H.G.
22.1 99.6 54.1 At4g29690 829090 type I phosphodiesterase/nucleotide pyrophosphatase family protein F:hydrolase activity, catalytic activity;P:metabolic process, nucleotide metabolic process;C:endomembrane system;MBOFPAV O.I. C.G. H.G.
22.1 99.6 25.4 At5g57980 835909 RPB5C (RNA POLYMERASE II FIFTH LARGEST SUBUNIT, C) NRPB5-like protein of unknown function; homologous to budding yeast RPB5 O.I. C.G. H.G.
22.0 99.6 67.9 At5g07110 830602 PRA1.B6 (PRENYLATED RAB ACCEPTOR 1.B6) F:molecular_function unknown;P:vesicle-mediated transport;C:endoplasmic reticulum;PMFO O.I. C.G. H.G.
21.7 99.6 31.3 At1g23060 838914 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;MPOBFV O.I. C.G. H.G.
21.6 99.6 115.7 At1g76550 843988 pyrophosphate--fructose-6-phosphate 1-phosphotransferase alpha subunit, putative / pyrophosphate-dependent 6-phosphofructose-1-kinase, putative F:diphosphate-fructose-6-phosphate 1-phosphotransferase activity;P:glycolysis;C:pyrophosphate-dependent phosphofructokinase complex, alpha-subunit complex;BOPAMF O.I. C.G. H.G.
21.4 99.6 60.5 At2g24170 816951 endomembrane protein 70, putative F:unknown;P:unknown;C:endomembrane system, integral to membrane;MPOFB O.I. C.G. H.G.
21.2 99.6 99.4 At5g19110 832031 extracellular dermal glycoprotein-related / EDGP-related F:aspartic-type endopeptidase activity;P:proteolysis, N-terminal protein myristoylation;C:endomembrane system;P O.I. C.G. H.G.
21.1 99.6 83.6 At1g52910 841724 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
20.9 99.6 38.7 At5g15980 831455 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;POMBF O.I. C.G. H.G.
20.6 99.6 14.3 At2g43890 818993 polygalacturonase, putative / pectinase, putative F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMA O.I. C.G. H.G.
20.4 99.6 40.3 At3g16200 820866 unknown protein F:molecular_function unknown;P:biological_process unknown;C:Golgi apparatus;OPB O.I. C.G. H.G.
20.3 99.6 46.7 At3g02650 821285 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBA O.I. C.G. H.G.
20.2 99.6 61.5 At1g52280 841658 AtRABG3d (Arabidopsis Rab GTPase homolog G3d) F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:plasma membrane, vacuole;MOFPBAV O.I. C.G. H.G.
20.0 99.6 41.8 At5g13910 831238 LEP (LEAFY PETIOLE) Encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (LEAFY PETIOLE). The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and LEAFY PETIOLE. Acts as a positive regulator of gibberellic acid-induced germination. O.I. C.G. H.G.
19.8 99.6 98.7 At1g10030 837538 ERG28 (Arabidopsis homolog of yeast ergosterol28) F:unknown;P:biological_process unknown;C:endomembrane system, integral to membrane;FMPO O.I. C.G. H.G.
19.7 99.6 64.2 At5g19520 832072 MSL9 (MECHANOSENSITIVE CHANNEL OF SMALL CONDUCTANCE-LIKE 9) F:mechanically-gated ion channel activity;P:detection of mechanical stimulus;C:nucleus, plasma membrane, membrane;BOFPAV O.I. C.G. H.G.
19.4 99.6 118.3 At1g47625 3767388 - pseudogene of seven transmembrane domain protein O.I. C.G. H.G.
19.3 99.6 148.7 At4g34490 829600 ATCAP1 (ARABIDOPSIS THALIANA CYCLASE ASSOCIATED PROTEIN 1) CYCLASE ASSOCIATED PROTEIN O.I. C.G. H.G.
19.3 99.6 126.7 At1g74030 843741 enolase, putative F:phosphopyruvate hydratase activity;P:in 12 processes;C:phosphopyruvate hydratase complex, chloroplast;OBMFAP O.I. C.G. H.G.
19.0 99.5 68.2 At1g57590 842135 carboxylesterase F:carboxylesterase activity;P:biological_process unknown;C:unknown;PMOB O.I. C.G. H.G.
18.5 99.5 111.4 At2g41800 818779 - F:molecular_function unknown;P:biological_process unknown;C:cell wall, plant-type cell wall;P O.I. C.G. H.G.
18.4 99.5 120.2 At2g18980 816415 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBM O.I. C.G. H.G.
18.4 99.5 18.1 At5g62330 836354 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
18.3 99.5 186.9 At1g41830 840792 SKS6 (SKU5-SIMILAR 6) F:pectinesterase activity;P:unknown;C:apoplast, cell wall, membrane, plant-type cell wall;FBPMOA O.I. C.G. H.G.
18.3 99.5 24.0 At5g25830 832652 zinc finger (GATA type) family protein F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus;PFOM O.I. C.G. H.G.
18.0 99.5 52.8 At3g24670 822063 pectate lyase family protein F:pectate lyase activity;P:biological_process unknown;C:endomembrane system;PBFO O.I. C.G. H.G.
18.0 99.5 46.1 At2g35190 818086 NPSN11 (NOVEL PLANT SNARE 11) plant-specific SNARE located in cell plate of dividing cells. cofractionates with the cytokinesis-specific syntaxin, KNOLLE, which is required for the formation of the cell plate. O.I. C.G. H.G.
18.0 99.5 40.9 At3g04080 819563 ATAPY1 (APYRASE 1) Encodes an enzyme with ATPase and ADPase activity (an apyrase) that when mutated in combination with ATAPY2 causes a complete inhibition of pollen germination. O.I. C.G. H.G.
18.0 99.5 39.2 At2g04090 814945 MATE efflux family protein F:drug transporter activity, antiporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFMA O.I. C.G. H.G.
18.0 99.5 24.2 At5g02170 831896 amino acid transporter family protein F:amino acid transmembrane transporter activity;P:amino acid transport;C:membrane;MPFOBAV O.I. C.G. H.G.
17.9 99.5 30.6 At5g18070 831926 DRT101 (DNA-DAMAGE-REPAIR/TOLERATION 101) encodes a novel protein involved in DNA repair from UV damage. Isolated by functional complementation of E. coli UV-sensitive mutants (UVR genes). O.I. C.G. H.G.
17.6 99.5 110.3 At1g60810 842375 ACLA-2 One of the three genes encoding subunit A of the trimeric enzyme ATP Citrate lyase O.I. C.G. H.G.
17.4 99.5 73.5 At1g63050 842608 membrane bound O-acyl transferase (MBOAT) family protein F:acyltransferase activity;P:biological_process unknown;C:endomembrane system, membrane;MFOBP O.I. C.G. H.G.
17.0 99.5 145.1 At1g09330 837454 unknown protein F:molecular_function unknown;P:biological_process unknown;C:integral to membrane;MFOP O.I. C.G. H.G.
16.9 99.5 28.0 At1g19710 838559 glycosyl transferase family 1 protein F:transferase activity, transferring glycosyl groups;P:biosynthetic process;C:Golgi apparatus;BOAMPF O.I. C.G. H.G.
16.8 99.5 53.2 At3g13320 820532 CAX2 (CATION EXCHANGER 2) low affinity calcium antiporter CAX2 O.I. C.G. H.G.
16.7 99.5 82.3 At2g29390 817488 SMO2-2 (STEROL 4-ALPHA-METHYL-OXIDASE 2-2) Encodes a sterol 4-alpha-methyl-oxidase, specifically a 4-alpha-methyl-delta-7-sterol-4alpha-methyl-oxidase. O.I. C.G. H.G.
16.6 99.5 49.3 At1g74500 843791 bHLH family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;P O.I. C.G. H.G.
16.5 99.5 17.2 At2g24300 816966 calmodulin-binding protein F:calmodulin binding;P:biological_process unknown;C:unknown;PB O.I. C.G. H.G.
16.4 99.5 78.3 At3g43960 823513 cysteine proteinase, putative F:cysteine-type peptidase activity, cysteine-type endopeptidase activity;P:proteolysis;C:anchored to membrane;MOPVBAF O.I. C.G. H.G.
16.3 99.5 175.3 At3g03160 821066 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
16.3 99.5 57.7 At5g57090 835813 EIR1 (ETHYLENE INSENSITIVE ROOT 1) Encodes an auxin efflux carrier that is similar to bacterial membrane transporters. Root-specific role in the transport of auxin. Acts downstream of CTR1 and ethylene biosynthesis, in the same pathway as EIN2 and AUX1, and independent from EIN3 and EIN5/AIN1 pathway. In the root, the protein localizes apically in epidermal and lateral root cap cells and predominantly basally in cortical cells. Functions may be regulated by phosphorylation status. EIR1 expression is induced by brassinolide treatment in the brassinosteroid-insensitive br1 mutant. Gravistimulation resulted in asymmetric PIN2 distribution, with more protein degraded at the upper side of the gravistimulated root. Protein turnover is affected by the proteasome and by endosomal cycling. Plasma membrane-localized PIN proteins mediate a saturable efflux of auxin. PINs mediate auxin efflux from mammalian and yeast cells without needing additional plant-specific factors. The action of PINs in auxin efflux is distinct from PGPs, rate-limiting, specific to auxins and sensitive to auxin transport inhibitors. Membrane sterol composition is essential for the acquisition of PIN2 polarity. O.I. C.G. H.G.
16.0 99.5 11.3 At3g10660 820235 CPK2 (CALMODULIN-DOMAIN PROTEIN KINASE CDPK ISOFORM 2) predicted to encode calcium-dependent protein kinase and is localized to the ER. Protein is myristoylated in a cell-free extract. Changing the proposed myristoylated site, G residue in the amino terminal, to A prevented the meristoylation . The G to A mutation decreased AtCPK2 membrane association by approximately 50%. O.I. C.G. H.G.
15.9 99.5 206.1 At1g04430 839522 dehydration-responsive protein-related F:unknown;P:biological_process unknown;C:Golgi apparatus, plasma membrane;PBO O.I. C.G. H.G.
15.8 99.5 36.5 At3g23660 821946 transport protein, putative F:protein binding, transporter activity, zinc ion binding;P:intracellular protein transport, transport, ER to Golgi vesicle-mediated transport;C:COPII vesicle coat;MFOP O.I. C.G. H.G.
15.6 99.5 78.1 At4g27080 828816 thioredoxin family protein Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. Unlike several other PDI family members, transcript levels for this gene are not up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin). O.I. C.G. H.G.
15.6 99.5 61.2 At1g53290 841763 galactosyltransferase family protein F:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:protein amino acid glycosylation;C:membrane;MPOB O.I. C.G. H.G.
15.5 99.5 110.4 At1g61770 842474 DNAJ heat shock N-terminal domain-containing protein J domain protein. O.I. C.G. H.G.
15.2 99.4 129.6 At1g17180 838289 ATGSTU25 (GLUTATHIONE S-TRANSFERASE TAU 25) Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). O.I. C.G. H.G.
15.2 99.4 108.1 At1g35620 840461 ATPDIL5-2 (PDI-LIKE 5-2) Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. Unlike several other PDI family members, transcript levels for this gene are not up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin). However, the level of transcripts for this gene is slightly elevated in atbzip60 mutants. O.I. C.G. H.G.
15.2 99.4 38.9 At1g71940 843525 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOMPFA O.I. C.G. H.G.
15.1 99.4 24.5 At1g11000 837643 MLO4 (MILDEW RESISTANCE LOCUS O 4) A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO4 belongs to the clade I, with AtMLO11 and AtMLO14. The gene is expressed during early seedling growth, in roots and lateral root primordia, in flower and fruit abscission zone, in vascular system of root, cotyledons and young leaves, it was not expressed in mature rosette leaves, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s). O.I. C.G. H.G.
15.0 99.4 147.1 At5g23830 832448 MD-2-related lipid recognition domain-containing protein / ML domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
15.0 99.4 53.4 At4g29520 829073 - F:unknown;P:unknown;C:endoplasmic reticulum, plasma membrane;OMPFA O.I. C.G. H.G.
15.0 99.4 5.0 At4g10560 826648 MEE53 (maternal effect embryo arrest 53) F:protein binding, zinc ion binding;P:embryonic development ending in seed dormancy;C:cellular_component unknown;P O.I. C.G. H.G.
14.9 99.4 109.2 At5g39320 833928 UDP-glucose 6-dehydrogenase, putative F:in 6 functions;P:metabolic process;C:cytosol, nucleus;OBAMPFV O.I. C.G. H.G.
14.8 99.4 42.5 At3g49080 824070 ribosomal protein S9 family protein F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, ribosome, intracellular;BOMAPFV O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
96.6	99.9	51.6	At2g43880	818992	polygalacturonase, putative / pectinase, putative	F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMAV	O.I.	C.G.	H.G.
78.1	99.9	338.0	At2g33790	817946	AGP30 (ARABINOGALACTAN PROTEIN30)	pollen Ole e 1 allergen protein containing 14.6% proline residues, similar to arabinogalactan protein (Daucus carota) GI:11322245, SP:Q03211 Pistil-specific extensin-like protein precursor (PELP) {Nicotiana tabacum}; contains Pfam profile PF01190: Pollen proteins Ole e I family	O.I.	C.G.	H.G.
71.2	99.9	58.9	At3g23470	821928	cyclopropane-fatty-acyl-phospholipid synthase	F:cyclopropane-fatty-acyl-phospholipid synthase activity;P:lipid biosynthetic process;C:endomembrane system;OBFPAM	O.I.	C.G.	H.G.
62.7	99.8	72.2	At5g48110	834863	terpene synthase/cyclase family protein	F:lyase activity, magnesium ion binding;P:metabolic process;C:chloroplast;PMO	O.I.	C.G.	H.G.
61.0	99.8	52.1	At5g51500	835224	pectinesterase family protein	F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMO	O.I.	C.G.	H.G.
44.6	99.8	119.9	At4g03190	828045	GRH1 (GRR1-LIKE PROTEIN 1)	Encodes an F box protein belonging to the TIR1 subfamily. This protein forms SCF complexes with ASK1 and CUL1 and interacts with Aux/IAA proteins in an auxin-dependent manner. It also has sequence similarity to the yeast protein GRR1, which is involved in glucose repression.	O.I.	C.G.	H.G.
43.9	99.8	78.9	At4g01630	827983	ATEXPA17 (ARABIDOPSIS THALIANA EXPANSIN A17)	member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)	O.I.	C.G.	H.G.
40.4	99.8	15.8	At1g26700	839211	MLO14 (MILDEW RESISTANCE LOCUS O 14)	A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO14 belongs to the clade I, with AtMLO4 and AtMLO11. The gene is expressed during early seedling growth, in developing primary root, and particularly in root tips of 10-day old seedlings; it was not expressed in leaves or flowers, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s).	O.I.	C.G.	H.G.
40.3	99.8	42.8	At4g28650	828983	leucine-rich repeat transmembrane protein kinase, putative	F:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
39.8	99.8	47.3	At1g05650	837072	polygalacturonase, putative / pectinase, putative	F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMAV	O.I.	C.G.	H.G.
36.9	99.7	24.2	At3g63470	825522	scpl40 (serine carboxypeptidase-like 40)	F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PFMOB	O.I.	C.G.	H.G.
36.7	99.7	46.8	At1g31950	840085	terpene synthase/cyclase family protein	F:lyase activity, magnesium ion binding;P:metabolic process;C:membrane;PO	O.I.	C.G.	H.G.
32.7	99.7	94.2	At5g52180	835294	unknown protein	F:unknown;P:unknown;C:endomembrane system;MPO	O.I.	C.G.	H.G.
32.5	99.7	56.0	At3g54770	824642	RNA recognition motif (RRM)-containing protein	F:RNA binding, nucleotide binding, nucleic acid binding;P:unknown;C:cellular_component unknown;MPFOB	O.I.	C.G.	H.G.
30.7	99.7	172.1	At3g17940	820642	aldose 1-epimerase family protein	F:isomerase activity, carbohydrate binding, aldose 1-epimerase activity, catalytic activity;P:galactose metabolic process, hexose metabolic process, carbohydrate metabolic process;C:cellular_component unknown;BOMFPA	O.I.	C.G.	H.G.
30.1	99.7	20.6	At5g43030	834318	DC1 domain-containing protein	F:unknown;P:intracellular signaling cascade;C:cellular_component unknown;PMO	O.I.	C.G.	H.G.
29.8	99.7	19.4	At5g15150	831367	ATHB-3 (ARABIDOPSIS THALIANA HOMEOBOX 3)	homeobox-containing gene with an unusual feature: a leucine zipper motif adjacent to the carboxyl-terminal of the homeodomain structure. This gene is expressed primarily in the cortex of the root and the stem.	O.I.	C.G.	H.G.
29.3	99.7	68.6	At5g01320	830867	pyruvate decarboxylase, putative	F:in 6 functions;P:unknown;C:cellular_component unknown;BOFPAMV	O.I.	C.G.	H.G.
28.9	99.7	57.7	At4g39390	830094	NST-K1 (NUCLEOTIDE SUGAR TRANSPORTER-KT 1)	Encodes a golgi localized nucleotide sugar transporter.	O.I.	C.G.	H.G.
27.9	99.7	74.3	At3g52940	824460	FK (FACKEL)	Encodes a sterol C-14 reductase required for cell division and expansion and is involved in proper organization of the embryo.	O.I.	C.G.	H.G.
27.1	99.7	106.2	At3g44330	823558	-	F:unknown;P:protein processing;C:mitochondrion, endoplasmic reticulum, plasma membrane, vacuole;MOPAB	O.I.	C.G.	H.G.
26.9	99.7	139.2	At5g65810	836710	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
26.7	99.7	205.0	At2g17420	816248	NTRA (NADPH-DEPENDENT THIOREDOXIN REDUCTASE A)	NADPH-dependent thioredoxin reductase, major cytosolic isoform	O.I.	C.G.	H.G.
26.4	99.7	96.1	At2g25810	817123	TIP4	F:water channel activity;P:transport;C:integral to membrane, membrane;BPMOFA	O.I.	C.G.	H.G.
25.8	99.7	47.2	At1g76260	843959	transducin family protein / WD-40 repeat family protein	F:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;MFPOB	O.I.	C.G.	H.G.
25.6	99.7	30.5	At3g01220	821232	ATHB20 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 20)	Encodes a homeodomain leucine zipper class I (HD-Zip I) protein, its expression is auxin-inducible and dependent on MP gene activity.	O.I.	C.G.	H.G.
25.3	99.6	40.1	At5g22790	832342	RER1 (RETICULATA-RELATED 1)	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion, plastid, chloroplast inner membrane, chloroplast envelope;MOBPFVA	O.I.	C.G.	H.G.
25.1	99.6	14.3	At2g24400	816976	auxin-responsive protein, putative / small auxin up RNA (SAUR_D)	F:calmodulin binding;P:response to auxin stimulus;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
24.7	99.6	22.1	At5g10720	830938	AHK5 (ARABIDOPSIS HISTIDINE KINASE 5)	member of Histidine Kinase	O.I.	C.G.	H.G.
24.3	99.6	76.6	At2g17630	816270	phosphoserine aminotransferase, putative	F:pyridoxal phosphate binding, transaminase activity, catalytic activity, O-phospho-L-serine:2-oxoglutarate aminotransferase activity;P:response to cadmium ion;C:chloroplast;BOMFPA	O.I.	C.G.	H.G.
24.2	99.6	35.2	At4g30420	829165	nodulin MtN21 family protein	F:molecular_function unknown;P:biological_process unknown;C:membrane;BOPAM	O.I.	C.G.	H.G.
24.1	99.6	133.1	At2g25980	817139	jacalin lectin family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO	O.I.	C.G.	H.G.
24.1	99.6	17.8	At1g73160	843647	glycosyl transferase family 1 protein	F:transferase activity, transferring glycosyl groups;P:biosynthetic process;C:unknown;BOAFPM	O.I.	C.G.	H.G.
23.9	99.6	172.9	At3g54960	824661	ATPDIL1-3 (PDI-LIKE 1-3)	Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. Transcript levels for this gene are up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin). Neither AtIRE1-2 nor AtbZIP60 appear to be required for this response.	O.I.	C.G.	H.G.
23.8	99.6	104.8	At3g57010	824868	strictosidine synthase family protein	F:strictosidine synthase activity;P:alkaloid biosynthetic process, biosynthetic process;C:endoplasmic reticulum;PMBOA	O.I.	C.G.	H.G.
23.8	99.6	75.6	At1g61580	842454	RPL3B (R-PROTEIN L3 B)	F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome, membrane;BOMAPFV	O.I.	C.G.	H.G.
23.3	99.6	61.7	At1g34020	840299	transporter-related	F:unknown;P:unknown;C:plasma membrane, membrane;PMFOB	O.I.	C.G.	H.G.
23.2	99.6	92.4	At3g27230	822342	-	F:unknown;P:unknown;C:Golgi apparatus;PB	O.I.	C.G.	H.G.
22.9	99.6	78.4	At4g33780	829520	-	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
22.7	99.6	92.5	At5g42420	834248	transporter-related	F:unknown;P:unknown;C:membrane;PMFOB	O.I.	C.G.	H.G.
22.4	99.6	119.6	At1g45130	841080	BGAL5 (beta-galactosidase 5)	F:cation binding, beta-galactosidase activity, catalytic activity;P:lactose catabolic process, using glucoside 3-dehydrogenase, carbohydrate metabolic process, lactose catabolic process via UDP-galactose, lactose catabolic process;C:endomembrane system, beta-galactosidase complex;BPMFOA	O.I.	C.G.	H.G.
22.4	99.6	109.2	At2g34300	817991	dehydration-responsive protein-related	F:unknown;P:biological_process unknown;C:Golgi apparatus;OMBFPVA	O.I.	C.G.	H.G.
22.2	99.6	34.7	At2g41810	818780	-	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PB	O.I.	C.G.	H.G.
22.1	99.6	54.1	At4g29690	829090	type I phosphodiesterase/nucleotide pyrophosphatase family protein	F:hydrolase activity, catalytic activity;P:metabolic process, nucleotide metabolic process;C:endomembrane system;MBOFPAV	O.I.	C.G.	H.G.
22.1	99.6	25.4	At5g57980	835909	RPB5C (RNA POLYMERASE II FIFTH LARGEST SUBUNIT, C)	NRPB5-like protein of unknown function; homologous to budding yeast RPB5	O.I.	C.G.	H.G.
22.0	99.6	67.9	At5g07110	830602	PRA1.B6 (PRENYLATED RAB ACCEPTOR 1.B6)	F:molecular_function unknown;P:vesicle-mediated transport;C:endoplasmic reticulum;PMFO	O.I.	C.G.	H.G.
21.7	99.6	31.3	At1g23060	838914	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;MPOBFV	O.I.	C.G.	H.G.
21.6	99.6	115.7	At1g76550	843988	pyrophosphate--fructose-6-phosphate 1-phosphotransferase alpha subunit, putative / pyrophosphate-dependent 6-phosphofructose-1-kinase, putative	F:diphosphate-fructose-6-phosphate 1-phosphotransferase activity;P:glycolysis;C:pyrophosphate-dependent phosphofructokinase complex, alpha-subunit complex;BOPAMF	O.I.	C.G.	H.G.
21.4	99.6	60.5	At2g24170	816951	endomembrane protein 70, putative	F:unknown;P:unknown;C:endomembrane system, integral to membrane;MPOFB	O.I.	C.G.	H.G.
21.2	99.6	99.4	At5g19110	832031	extracellular dermal glycoprotein-related / EDGP-related	F:aspartic-type endopeptidase activity;P:proteolysis, N-terminal protein myristoylation;C:endomembrane system;P	O.I.	C.G.	H.G.
21.1	99.6	83.6	At1g52910	841724	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
20.9	99.6	38.7	At5g15980	831455	pentatricopeptide (PPR) repeat-containing protein	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;POMBF	O.I.	C.G.	H.G.
20.6	99.6	14.3	At2g43890	818993	polygalacturonase, putative / pectinase, putative	F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMA	O.I.	C.G.	H.G.
20.4	99.6	40.3	At3g16200	820866	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:Golgi apparatus;OPB	O.I.	C.G.	H.G.
20.3	99.6	46.7	At3g02650	821285	pentatricopeptide (PPR) repeat-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBA	O.I.	C.G.	H.G.
20.2	99.6	61.5	At1g52280	841658	AtRABG3d (Arabidopsis Rab GTPase homolog G3d)	F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:plasma membrane, vacuole;MOFPBAV	O.I.	C.G.	H.G.
20.0	99.6	41.8	At5g13910	831238	LEP (LEAFY PETIOLE)	Encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (LEAFY PETIOLE). The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and LEAFY PETIOLE. Acts as a positive regulator of gibberellic acid-induced germination.	O.I.	C.G.	H.G.
19.8	99.6	98.7	At1g10030	837538	ERG28 (Arabidopsis homolog of yeast ergosterol28)	F:unknown;P:biological_process unknown;C:endomembrane system, integral to membrane;FMPO	O.I.	C.G.	H.G.
19.7	99.6	64.2	At5g19520	832072	MSL9 (MECHANOSENSITIVE CHANNEL OF SMALL CONDUCTANCE-LIKE 9)	F:mechanically-gated ion channel activity;P:detection of mechanical stimulus;C:nucleus, plasma membrane, membrane;BOFPAV	O.I.	C.G.	H.G.
19.4	99.6	118.3	At1g47625	3767388	-	pseudogene of seven transmembrane domain protein	O.I.	C.G.	H.G.
19.3	99.6	148.7	At4g34490	829600	ATCAP1 (ARABIDOPSIS THALIANA CYCLASE ASSOCIATED PROTEIN 1)	CYCLASE ASSOCIATED PROTEIN	O.I.	C.G.	H.G.
19.3	99.6	126.7	At1g74030	843741	enolase, putative	F:phosphopyruvate hydratase activity;P:in 12 processes;C:phosphopyruvate hydratase complex, chloroplast;OBMFAP	O.I.	C.G.	H.G.
19.0	99.5	68.2	At1g57590	842135	carboxylesterase	F:carboxylesterase activity;P:biological_process unknown;C:unknown;PMOB	O.I.	C.G.	H.G.
18.5	99.5	111.4	At2g41800	818779	-	F:molecular_function unknown;P:biological_process unknown;C:cell wall, plant-type cell wall;P	O.I.	C.G.	H.G.
18.4	99.5	120.2	At2g18980	816415	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBM	O.I.	C.G.	H.G.
18.4	99.5	18.1	At5g62330	836354	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
18.3	99.5	186.9	At1g41830	840792	SKS6 (SKU5-SIMILAR 6)	F:pectinesterase activity;P:unknown;C:apoplast, cell wall, membrane, plant-type cell wall;FBPMOA	O.I.	C.G.	H.G.
18.3	99.5	24.0	At5g25830	832652	zinc finger (GATA type) family protein	F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus;PFOM	O.I.	C.G.	H.G.
18.0	99.5	52.8	At3g24670	822063	pectate lyase family protein	F:pectate lyase activity;P:biological_process unknown;C:endomembrane system;PBFO	O.I.	C.G.	H.G.
18.0	99.5	46.1	At2g35190	818086	NPSN11 (NOVEL PLANT SNARE 11)	plant-specific SNARE located in cell plate of dividing cells. cofractionates with the cytokinesis-specific syntaxin, KNOLLE, which is required for the formation of the cell plate.	O.I.	C.G.	H.G.
18.0	99.5	40.9	At3g04080	819563	ATAPY1 (APYRASE 1)	Encodes an enzyme with ATPase and ADPase activity (an apyrase) that when mutated in combination with ATAPY2 causes a complete inhibition of pollen germination.	O.I.	C.G.	H.G.
18.0	99.5	39.2	At2g04090	814945	MATE efflux family protein	F:drug transporter activity, antiporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFMA	O.I.	C.G.	H.G.
18.0	99.5	24.2	At5g02170	831896	amino acid transporter family protein	F:amino acid transmembrane transporter activity;P:amino acid transport;C:membrane;MPFOBAV	O.I.	C.G.	H.G.
17.9	99.5	30.6	At5g18070	831926	DRT101 (DNA-DAMAGE-REPAIR/TOLERATION 101)	encodes a novel protein involved in DNA repair from UV damage. Isolated by functional complementation of E. coli UV-sensitive mutants (UVR genes).	O.I.	C.G.	H.G.
17.6	99.5	110.3	At1g60810	842375	ACLA-2	One of the three genes encoding subunit A of the trimeric enzyme ATP Citrate lyase	O.I.	C.G.	H.G.
17.4	99.5	73.5	At1g63050	842608	membrane bound O-acyl transferase (MBOAT) family protein	F:acyltransferase activity;P:biological_process unknown;C:endomembrane system, membrane;MFOBP	O.I.	C.G.	H.G.
17.0	99.5	145.1	At1g09330	837454	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:integral to membrane;MFOP	O.I.	C.G.	H.G.
16.9	99.5	28.0	At1g19710	838559	glycosyl transferase family 1 protein	F:transferase activity, transferring glycosyl groups;P:biosynthetic process;C:Golgi apparatus;BOAMPF	O.I.	C.G.	H.G.
16.8	99.5	53.2	At3g13320	820532	CAX2 (CATION EXCHANGER 2)	low affinity calcium antiporter CAX2	O.I.	C.G.	H.G.
16.7	99.5	82.3	At2g29390	817488	SMO2-2 (STEROL 4-ALPHA-METHYL-OXIDASE 2-2)	Encodes a sterol 4-alpha-methyl-oxidase, specifically a 4-alpha-methyl-delta-7-sterol-4alpha-methyl-oxidase.	O.I.	C.G.	H.G.
16.6	99.5	49.3	At1g74500	843791	bHLH family protein	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;P	O.I.	C.G.	H.G.
16.5	99.5	17.2	At2g24300	816966	calmodulin-binding protein	F:calmodulin binding;P:biological_process unknown;C:unknown;PB	O.I.	C.G.	H.G.
16.4	99.5	78.3	At3g43960	823513	cysteine proteinase, putative	F:cysteine-type peptidase activity, cysteine-type endopeptidase activity;P:proteolysis;C:anchored to membrane;MOPVBAF	O.I.	C.G.	H.G.
16.3	99.5	175.3	At3g03160	821066	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
16.3	99.5	57.7	At5g57090	835813	EIR1 (ETHYLENE INSENSITIVE ROOT 1)	Encodes an auxin efflux carrier that is similar to bacterial membrane transporters. Root-specific role in the transport of auxin. Acts downstream of CTR1 and ethylene biosynthesis, in the same pathway as EIN2 and AUX1, and independent from EIN3 and EIN5/AIN1 pathway. In the root, the protein localizes apically in epidermal and lateral root cap cells and predominantly basally in cortical cells. Functions may be regulated by phosphorylation status. EIR1 expression is induced by brassinolide treatment in the brassinosteroid-insensitive br1 mutant. Gravistimulation resulted in asymmetric PIN2 distribution, with more protein degraded at the upper side of the gravistimulated root. Protein turnover is affected by the proteasome and by endosomal cycling. Plasma membrane-localized PIN proteins mediate a saturable efflux of auxin. PINs mediate auxin efflux from mammalian and yeast cells without needing additional plant-specific factors. The action of PINs in auxin efflux is distinct from PGPs, rate-limiting, specific to auxins and sensitive to auxin transport inhibitors. Membrane sterol composition is essential for the acquisition of PIN2 polarity.	O.I.	C.G.	H.G.
16.0	99.5	11.3	At3g10660	820235	CPK2 (CALMODULIN-DOMAIN PROTEIN KINASE CDPK ISOFORM 2)	predicted to encode calcium-dependent protein kinase and is localized to the ER. Protein is myristoylated in a cell-free extract. Changing the proposed myristoylated site, G residue in the amino terminal, to A prevented the meristoylation . The G to A mutation decreased AtCPK2 membrane association by approximately 50%.	O.I.	C.G.	H.G.
15.9	99.5	206.1	At1g04430	839522	dehydration-responsive protein-related	F:unknown;P:biological_process unknown;C:Golgi apparatus, plasma membrane;PBO	O.I.	C.G.	H.G.
15.8	99.5	36.5	At3g23660	821946	transport protein, putative	F:protein binding, transporter activity, zinc ion binding;P:intracellular protein transport, transport, ER to Golgi vesicle-mediated transport;C:COPII vesicle coat;MFOP	O.I.	C.G.	H.G.
15.6	99.5	78.1	At4g27080	828816	thioredoxin family protein	Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. Unlike several other PDI family members, transcript levels for this gene are not up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin).	O.I.	C.G.	H.G.
15.6	99.5	61.2	At1g53290	841763	galactosyltransferase family protein	F:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:protein amino acid glycosylation;C:membrane;MPOB	O.I.	C.G.	H.G.
15.5	99.5	110.4	At1g61770	842474	DNAJ heat shock N-terminal domain-containing protein	J domain protein.	O.I.	C.G.	H.G.
15.2	99.4	129.6	At1g17180	838289	ATGSTU25 (GLUTATHIONE S-TRANSFERASE TAU 25)	Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).	O.I.	C.G.	H.G.
15.2	99.4	108.1	At1g35620	840461	ATPDIL5-2 (PDI-LIKE 5-2)	Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. Unlike several other PDI family members, transcript levels for this gene are not up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin). However, the level of transcripts for this gene is slightly elevated in atbzip60 mutants.	O.I.	C.G.	H.G.
15.2	99.4	38.9	At1g71940	843525	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOMPFA	O.I.	C.G.	H.G.
15.1	99.4	24.5	At1g11000	837643	MLO4 (MILDEW RESISTANCE LOCUS O 4)	A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO4 belongs to the clade I, with AtMLO11 and AtMLO14. The gene is expressed during early seedling growth, in roots and lateral root primordia, in flower and fruit abscission zone, in vascular system of root, cotyledons and young leaves, it was not expressed in mature rosette leaves, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s).	O.I.	C.G.	H.G.
15.0	99.4	147.1	At5g23830	832448	MD-2-related lipid recognition domain-containing protein / ML domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
15.0	99.4	53.4	At4g29520	829073	-	F:unknown;P:unknown;C:endoplasmic reticulum, plasma membrane;OMPFA	O.I.	C.G.	H.G.
15.0	99.4	5.0	At4g10560	826648	MEE53 (maternal effect embryo arrest 53)	F:protein binding, zinc ion binding;P:embryonic development ending in seed dormancy;C:cellular_component unknown;P	O.I.	C.G.	H.G.
14.9	99.4	109.2	At5g39320	833928	UDP-glucose 6-dehydrogenase, putative	F:in 6 functions;P:metabolic process;C:cytosol, nucleus;OBAMPFV	O.I.	C.G.	H.G.
14.8	99.4	42.5	At3g49080	824070	ribosomal protein S9 family protein	F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, ribosome, intracellular;BOMAPFV	O.I.	C.G.	H.G.

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GSM ID	GSM133978
Assay name	Birnbaum_1-8_StageII-1_Rep1_ATH1
GSE experiment	GSE5749: A gene expression map of the Arabidopsis root

Microarray experiments to specifically-expressed genes

GSM ID GSM133978 Assay name Birnbaum_1-8_StageII-1_Rep1_ATH1 GSE experiment GSE5749: A gene expression map of the Arabidopsis root

GSM ID GSM133978

Assay name Birnbaum_1-8_StageII-1_Rep1_ATH1

GSE experiment GSE5749: A gene expression map of the Arabidopsis root