CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM133976

Assay name Birnbaum_1-6_StageI-3_Rep3_ATH1

GSE experiment GSE5749: A gene expression map of the Arabidopsis root

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
91.6 99.9 77.8 At3g12860 820468 nucleolar protein Nop56, putative F:unknown;P:biological_process unknown;C:unknown;MOFPBAV O.I. C.G. H.G.
61.1 99.8 22.4 At1g03840 839396 MGP (Magpie) MGP is a nuclear-localized putative transcription factor with three zinc finger domains. MGP can interact with three proteins implicated in root patterning: SCR, SHR, and JKD in Y2H assays, and these interactions depend on the first zinc finger in MGP. MGP appears to be a direct transcriptional target of SHR and SCR, based on promoter binding assays, though it is not expressed in the QC, based on in situ hybridizations. O.I. C.G. H.G.
59.3 99.8 33.3 At2g23050 816835 NPY4 (NAKED PINS IN YUC MUTANTS 4) A member of the NPY gene family (NPY1/AT4G31820, NPY2/AT2G14820, NPY3/AT5G67440, NPY4/AT2G23050, NPY5/AT4G37590). Involved in auxin-mediated organogenesis. O.I. C.G. H.G.
55.8 99.8 193.6 At2g41800 818779 - F:molecular_function unknown;P:biological_process unknown;C:cell wall, plant-type cell wall;P O.I. C.G. H.G.
49.7 99.8 190.8 At1g50060 841430 pathogenesis-related protein, putative F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFOB O.I. C.G. H.G.
48.5 99.8 28.2 At3g62760 825451 ATGSTF13 Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002). O.I. C.G. H.G.
48.2 99.8 382.5 At5g54370 835525 late embryogenesis abundant protein-related / LEA protein-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
47.9 99.8 37.4 At5g57980 835909 RPB5C (RNA POLYMERASE II FIFTH LARGEST SUBUNIT, C) NRPB5-like protein of unknown function; homologous to budding yeast RPB5 O.I. C.G. H.G.
44.0 99.8 116.7 At1g63050 842608 membrane bound O-acyl transferase (MBOAT) family protein F:acyltransferase activity;P:biological_process unknown;C:endomembrane system, membrane;MFOBP O.I. C.G. H.G.
41.1 99.8 370.3 At3g57150 824882 NAP57 (Arabidopsis thaliana homologue of NAP57) Encodes a putative pseudouridine synthase (NAP57). O.I. C.G. H.G.
40.8 99.8 33.9 At3g15240 820755 - - O.I. C.G. H.G.
40.6 99.8 88.8 At4g38410 829998 dehydrin, putative F:molecular_function unknown;P:response to water, response to stress;C:cellular_component unknown;POMFBA O.I. C.G. H.G.
40.3 99.8 54.4 At5g59240 836042 40S ribosomal protein S8 (RPS8B) F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic small ribosomal subunit, cytosolic ribosome, ribosome, membrane;MAOFP O.I. C.G. H.G.
40.0 99.8 20.6 At3g30350 822736 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
38.6 99.8 178.4 At5g62340 836355 invertase/pectin methylesterase inhibitor family protein F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
38.2 99.8 85.1 At4g37160 829870 sks15 (SKU5 Similar 15) F:oxidoreductase activity, copper ion binding;P:unknown;C:endomembrane system;FBPMOA O.I. C.G. H.G.
38.0 99.8 148.9 At3g05060 819668 SAR DNA-binding protein, putative SAR DNA-binding protein, putative, strong similarity to SAR DNA-binding protein-1 (Pisum sativum) GI:3132696; contains Pfam profile PF01798: Putative snoRNA binding domain; encodes NOP58-like protein O.I. C.G. H.G.
36.5 99.7 118.1 At5g08620 830763 STRS2 (STRESS RESPONSE SUPPRESSOR 2) Similar in sequence to DEAD-box RNA helicases. Binds RNA. Involved in drought, salt and cold stress responses. O.I. C.G. H.G.
35.8 99.7 39.4 At1g33750 840266 terpene synthase/cyclase family protein F:lyase activity, magnesium ion binding;P:metabolic process;C:unknown;PO O.I. C.G. H.G.
35.2 99.7 23.8 At2g43480 818949 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOM O.I. C.G. H.G.
34.5 99.7 41.8 At2g34570 818021 MEE21 (maternal effect embryo arrest 21) F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:unknown;MFOP O.I. C.G. H.G.
34.1 99.7 68.3 At3g12270 820407 PRMT3 (PROTEIN ARGININE METHYLTRANSFERASE 3) F:methyltransferase activity, zinc ion binding;P:metabolic process;C:intracellular;MBOFPA O.I. C.G. H.G.
34.0 99.7 45.3 At1g06720 837182 - F:unknown;P:ribosome biogenesis;C:nucleus;OMFBPVA O.I. C.G. H.G.
33.8 99.7 60.8 At5g13520 831196 peptidase M1 family protein F:metallopeptidase activity, binding, zinc ion binding;P:proteolysis, leukotriene biosynthetic process;C:cellular_component unknown;BMOFAP O.I. C.G. H.G.
33.3 99.7 82.3 At1g79150 844256 binding F:binding;P:biological_process unknown;C:cellular_component unknown;OMFBPVA O.I. C.G. H.G.
32.4 99.7 13.6 At5g52170 835293 HDG7 (HOMEODOMAIN GLABROUS 7) Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family. O.I. C.G. H.G.
31.1 99.7 10.3 At5g40320 834030 DC1 domain-containing protein F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;POM O.I. C.G. H.G.
30.3 99.7 87.1 At5g27120 832770 SAR DNA-binding protein, putative SAR DNA-binding protein, putative, strong similarity to SAR DNA-binding protein-1 (Pisum sativum) GI:3132696; contains Pfam profile PF01798: Putative snoRNA binding domain; has similarity to MAR binding NOP58 protein O.I. C.G. H.G.
29.9 99.7 212.5 At1g52060 841635 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMOB O.I. C.G. H.G.
29.9 99.7 35.2 At5g14750 831327 ATMYB66 (MYB DOMAIN PROTEIN 66) Encodes a MyB-related protein containing R2 and R3 repeats, involved in root and hypocotyl epidermal cell fate determination. Loss of function mutations make extra root hairs. Nuclear localized protein is a positive regulator for expression of CAPRICE (CPC). O.I. C.G. H.G.
29.3 99.7 64.5 At2g23630 816895 sks16 (SKU5 Similar 16) F:pectinesterase activity, copper ion binding;P:unknown;C:endomembrane system;FBPMOA O.I. C.G. H.G.
28.8 99.7 22.4 At1g15480 838118 DNA binding F:DNA binding;P:biological_process unknown;C:unknown;PMOFAB O.I. C.G. H.G.
28.5 99.7 34.7 At5g48940 834952 leucine-rich repeat transmembrane protein kinase, putative F:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:unknown;MPOBFVA O.I. C.G. H.G.
28.3 99.7 230.6 At1g56110 842063 NOP56 (Arabidopsis homolog of nucleolar protein Nop56) NOP56-like protein O.I. C.G. H.G.
28.1 99.7 61.0 At4g29690 829090 type I phosphodiesterase/nucleotide pyrophosphatase family protein F:hydrolase activity, catalytic activity;P:metabolic process, nucleotide metabolic process;C:endomembrane system;MBOFPAV O.I. C.G. H.G.
28.0 99.7 23.1 At4g40000 830161 NOL1/NOP2/sun family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOMFAP O.I. C.G. H.G.
27.9 99.7 95.5 At4g25340 828637 immunophilin-related / FKBP-type peptidyl-prolyl cis-trans isomerase-related F:FK506 binding, peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:nucleolus;MOBFPVA O.I. C.G. H.G.
27.8 99.7 183.5 At3g19130 821447 ATRBP47B (RNA-binding protein 47B) F:RNA binding;P:unknown;C:unknown;MOPFBAV O.I. C.G. H.G.
27.5 99.7 32.5 At4g23590 828459 aminotransferase class I and II family protein F:1-aminocyclopropane-1-carboxylate synthase activity, pyridoxal phosphate binding, transferase activity, transferring nitrogenous groups, transaminase activity, catalytic activity;P:cellular amino acid and derivative metabolic process, biosynthetic process;C:cellular_component unknown;BOPMAF O.I. C.G. H.G.
26.8 99.7 318.3 At4g15910 827273 ATDI21 (ARABIDOPSIS THALIANA DROUGHT-INDUCED 21) encodes a gene whose transcript level in root and leaves increases to progressive drought stress. The transcript level is also affected by changes of endogenous or exogenous abscisic acid level. It appears to be a member of plant-specific gene family that includes late embryo-abundant and zinc- IAA-induced proteins in other plants. O.I. C.G. H.G.
26.7 99.7 75.2 At2g45730 819181 eukaryotic initiation factor 3 gamma subunit family protein F:translation initiation factor activity;P:translational initiation, regulation of translational initiation;C:cellular_component unknown;MFOP O.I. C.G. H.G.
26.0 99.7 46.5 At5g48110 834863 terpene synthase/cyclase family protein F:lyase activity, magnesium ion binding;P:metabolic process;C:chloroplast;PMO O.I. C.G. H.G.
25.8 99.7 39.2 At1g31950 840085 terpene synthase/cyclase family protein F:lyase activity, magnesium ion binding;P:metabolic process;C:membrane;PO O.I. C.G. H.G.
25.4 99.6 64.4 At4g31810 829310 enoyl-CoA hydratase/isomerase family protein F:3-hydroxyisobutyryl-CoA hydrolase activity, catalytic activity;P:fatty acid beta-oxidation, metabolic process;C:mitochondrion;BOMFPA O.I. C.G. H.G.
24.7 99.6 24.8 At3g57360 824903 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MP O.I. C.G. H.G.
24.2 99.6 191.9 At4g31290 829256 ChaC-like family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOMFP O.I. C.G. H.G.
24.0 99.6 38.1 At5g45140 834550 NRPC2 Encodes a subunit of RNA polymerase III (aka RNA polymerase C). O.I. C.G. H.G.
23.5 99.6 26.3 At1g56680 842124 glycoside hydrolase family 19 protein F:chitinase activity;P:cell wall macromolecule catabolic process;C:endomembrane system;PBOMFV O.I. C.G. H.G.
22.9 99.6 288.4 At3g03920 821062 Gar1 RNA-binding region family protein F:RNA binding, rRNA binding;P:rRNA processing;C:chloroplast thylakoid membrane, nucleolus;MPBOFVA O.I. C.G. H.G.
22.9 99.6 275.6 At4g25630 828668 FIB2 (FIBRILLARIN 2) encodes a fibrillarin, a key nucleolar protein in eukaryotes which associates with box C/D small nucleolar RNAs (snoRNAs) directing 2'-O-ribose methylation of the rRNA. This gene also encodes a novel box C/D snoRNA, U60.2f in its fifth intron that accumulates in seedlings and that their targeted residue on the 25 S rRNA is methylated. O.I. C.G. H.G.
22.8 99.6 69.2 At5g19520 832072 MSL9 (MECHANOSENSITIVE CHANNEL OF SMALL CONDUCTANCE-LIKE 9) F:mechanically-gated ion channel activity;P:detection of mechanical stimulus;C:nucleus, plasma membrane, membrane;BOFPAV O.I. C.G. H.G.
22.7 99.6 58.3 At2g19670 816486 PRMT1A (PROTEIN ARGININE METHYLTRANSFERASE 1A) F:protein-arginine N-methyltransferase activity;P:unknown;C:unknown;MBOPFA O.I. C.G. H.G.
22.6 99.6 9.1 At2g16230 816120 catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFO O.I. C.G. H.G.
22.0 99.6 34.0 At2g18220 816337 - F:unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBVA O.I. C.G. H.G.
21.7 99.6 57.4 At5g57280 835833 methyltransferase F:methyltransferase activity;P:metabolic process;C:unknown;BOMFPA O.I. C.G. H.G.
21.6 99.6 25.3 At1g07290 837240 nucleotide-sugar transmembrane transporter F:nucleotide-sugar transmembrane transporter activity;P:biological_process unknown;C:cellular_component unknown;MFPO O.I. C.G. H.G.
21.2 99.6 124.6 At1g63660 842670 GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative F:catalytic activity, GMP synthase (glutamine-hydrolyzing) activity, ATP binding;P:in 6 processes;C:unknown;OBAFMP O.I. C.G. H.G.
20.9 99.6 107.0 At5g57990 835910 UBP23 (UBIQUITIN-SPECIFIC PROTEASE 23) Encodes a ubiquitin-specific protease. O.I. C.G. H.G.
20.9 99.6 87.8 At5g55920 835690 nucleolar protein, putative F:S-adenosylmethionine-dependent methyltransferase activity, RNA binding;P:rRNA processing;C:nucleolus;BMOFPVA O.I. C.G. H.G.
20.7 99.6 202.2 At2g40360 818629 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:rRNA processing;C:nucleus;BMOFPVA O.I. C.G. H.G.
20.4 99.6 51.5 At2g43600 818962 glycoside hydrolase family 19 protein F:chitin binding, chitinase activity;P:cell wall macromolecule catabolic process;C:endomembrane system;PBOMFV O.I. C.G. H.G.
20.3 99.6 69.8 At1g61580 842454 RPL3B (R-PROTEIN L3 B) F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome, membrane;BOMAPFV O.I. C.G. H.G.
20.1 99.6 73.3 At4g30930 829217 NFD1 (NUCLEAR FUSION DEFECTIVE 1) Encodes a ribosomal RPL21M protein that is localized to the mitochondrion and is involved in karyogamy during female gametophyte development and fertilization. Mutants display defects in both male and female gametophyte development (i.e.collapsed pollen and female gametophytes with unfused central cells). O.I. C.G. H.G.
20.0 99.6 94.4 At4g30800 829203 40S ribosomal protein S11 (RPS11B) F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit;MOBAFP O.I. C.G. H.G.
19.9 99.6 88.4 At1g80270 844367 DNA-binding protein, putative F:DNA binding;P:biological_process unknown;C:chloroplast envelope;POMF O.I. C.G. H.G.
19.4 99.6 88.8 At3g55010 824667 PUR5 encoding phosphoribosylformylglycinamidine cyclo-ligase (syn. AIR synthetase)that phosphorylates 5-phosphoribosyl-N-formylglycinamidine (FGAM) to form 5-aminoimidazole ribonucleotide (AIR) O.I. C.G. H.G.
19.1 99.6 34.1 At3g52390 824404 tatD-related deoxyribonuclease family protein F:endodeoxyribonuclease activity, producing 5'-phosphomonoesters, deoxyribonuclease activity;P:biological_process unknown;C:cellular_component unknown;BOMFAP O.I. C.G. H.G.
19.1 99.6 30.3 At5g56220 835721 nucleoside-triphosphatase/ nucleotide binding F:nucleoside-triphosphatase activity, nucleotide binding;P:unknown;C:chloroplast;OPMBFVA O.I. C.G. H.G.
18.8 99.5 63.6 At2g28600 817408 ATP binding / ATP-dependent helicase/ nucleic acid binding F:nucleic acid binding, ATP binding, ATP-dependent helicase activity;P:biological_process unknown;C:cellular_component unknown;BOMFPAV O.I. C.G. H.G.
18.6 99.5 215.4 At5g60530 836174 late embryogenesis abundant protein-related / LEA protein-related F:molecular_function unknown;P:unknown;C:endomembrane system;MOFBPVA O.I. C.G. H.G.
18.6 99.5 99.2 At5g10130 830877 pollen Ole e 1 allergen and extensin family protein F:molecular_function unknown;P:biological_process unknown;C:extracellular space, endomembrane system;P O.I. C.G. H.G.
18.6 99.5 75.8 At1g73940 843731 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
18.5 99.5 111.1 At5g02050 831729 mitochondrial glycoprotein family protein / MAM33 family protein F:unknown;P:biological_process unknown;C:chloroplast, mitochondrial matrix;PFOMB O.I. C.G. H.G.
18.5 99.5 86.1 At3g27280 822347 ATPHB4 (PROHIBITIN 4) Part of protein complexes that are necessary for proficient mitochondrial function or biogenesis, thereby supporting cell division and differentiation in apical tissues O.I. C.G. H.G.
18.5 99.5 29.3 At1g29270 839801 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
18.4 99.5 52.1 At2g20515 816573 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
18.3 99.5 345.8 At3g51800 824343 ATG2 putative nuclear DNA-binding protein G2p (AtG2) mRNA, O.I. C.G. H.G.
18.3 99.5 39.2 At4g11120 826713 translation elongation factor Ts (EF-Ts), putative F:translation elongation factor activity;P:translational elongation;C:mitochondrion;BOPMF O.I. C.G. H.G.
18.2 99.5 11.3 At4g11780 826784 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;MOFPB O.I. C.G. H.G.
18.0 99.5 44.2 At5g17160 831580 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;OMBFPVA O.I. C.G. H.G.
18.0 99.5 32.9 At5g09300 830789 2-oxoisovalerate dehydrogenase, putative / 3-methyl-2-oxobutanoate dehydrogenase, putative / branched-chain alpha-keto acid dehydrogenase E1 alpha subunit, putative F:oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity;P:metabolic process;C:mitochondrion;BOMFPA O.I. C.G. H.G.
17.9 99.5 60.6 At5g57090 835813 EIR1 (ETHYLENE INSENSITIVE ROOT 1) Encodes an auxin efflux carrier that is similar to bacterial membrane transporters. Root-specific role in the transport of auxin. Acts downstream of CTR1 and ethylene biosynthesis, in the same pathway as EIN2 and AUX1, and independent from EIN3 and EIN5/AIN1 pathway. In the root, the protein localizes apically in epidermal and lateral root cap cells and predominantly basally in cortical cells. Functions may be regulated by phosphorylation status. EIR1 expression is induced by brassinolide treatment in the brassinosteroid-insensitive br1 mutant. Gravistimulation resulted in asymmetric PIN2 distribution, with more protein degraded at the upper side of the gravistimulated root. Protein turnover is affected by the proteasome and by endosomal cycling. Plasma membrane-localized PIN proteins mediate a saturable efflux of auxin. PINs mediate auxin efflux from mammalian and yeast cells without needing additional plant-specific factors. The action of PINs in auxin efflux is distinct from PGPs, rate-limiting, specific to auxins and sensitive to auxin transport inhibitors. Membrane sterol composition is essential for the acquisition of PIN2 polarity. O.I. C.G. H.G.
17.9 99.5 42.4 At5g48240 834877 unknown protein F:molecular_function unknown;P:biological_process unknown;C:nucleolus;MOFPB O.I. C.G. H.G.
17.9 99.5 13.0 At1g51190 841542 PLT2 (PLETHORA 2) Encodes a member of the AINTEGUMENTA-like (AIL) subclass of the AP2/EREBP family of transcription factors and is essential for quiescent center (QC) specification and stem cell activity. It is a key effector for establishment of the stem cell niche during embryonic pattern formation. It is transcribed in response to auxin accumulation and is dependent on auxin response transcription factors. O.I. C.G. H.G.
17.7 99.5 105.8 At1g22880 838893 CEL5 (CELLULASE 5) F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:cell wall, plasma membrane, plant-type cell wall;PBMOF O.I. C.G. H.G.
17.7 99.5 34.1 At1g13160 837874 SDA1 family protein F:binding;P:biological_process unknown;C:cellular_component unknown;BMOFPVA O.I. C.G. H.G.
17.5 99.5 21.4 At5g52380 835314 zinc knuckle (CCHC-type) family protein F:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MFVOP O.I. C.G. H.G.
17.2 99.5 82.5 At4g35850 829739 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:unknown;C:mitochondrion;POMFBA O.I. C.G. H.G.
17.1 99.5 119.3 At1g74030 843741 enolase, putative F:phosphopyruvate hydratase activity;P:in 12 processes;C:phosphopyruvate hydratase complex, chloroplast;OBMFAP O.I. C.G. H.G.
16.9 99.5 75.3 At2g15000 815989 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
16.6 99.5 98.1 At1g64880 842796 ribosomal protein S5 family protein F:structural constituent of ribosome, RNA binding;P:translation;C:ribosome, Golgi apparatus, intracellular;OBMFAPV O.I. C.G. H.G.
16.5 99.5 18.8 At1g30960 839983 GTP-binding protein (ERG) F:RNA binding, GTP binding;P:unknown;C:cytosol;BOMPFA O.I. C.G. H.G.
16.5 99.5 9.8 At5g15725 831428 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
16.4 99.5 66.4 At1g02810 838078 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMO O.I. C.G. H.G.
16.4 99.5 44.0 At2g47790 819391 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;MFBOPA O.I. C.G. H.G.
16.2 99.5 95.9 At4g32720 829408 AtLa1 (Arabidopsis thaliana La protein 1) Encodes AtLa1, a member of the highly abundant phosphoprotein La proteins. Predominantly localized to the nucleoplasm and was also detected in the nucleolar cavity. Has RNA binding activity. Required for normal ribosome biogenesis and embryogenesis. O.I. C.G. H.G.
16.2 99.5 87.9 At4g31120 829240 SKB1 (SHK1 BINDING PROTEIN 1) Involved in vernalization. Required for epigenetic silencing of FLC, and for vernalization-mediated histone modification. O.I. C.G. H.G.
16.2 99.5 32.6 At3g11520 820325 CYCB1 Encodes a B-type mitotic cyclin. O.I. C.G. H.G.
16.2 99.5 20.6 At5g05680 830452 nuclear pore complex protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBA O.I. C.G. H.G.
15.9 99.5 28.8 At4g37090 829863 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBVA O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
91.6	99.9	77.8	At3g12860	820468	nucleolar protein Nop56, putative	F:unknown;P:biological_process unknown;C:unknown;MOFPBAV	O.I.	C.G.	H.G.
61.1	99.8	22.4	At1g03840	839396	MGP (Magpie)	MGP is a nuclear-localized putative transcription factor with three zinc finger domains. MGP can interact with three proteins implicated in root patterning: SCR, SHR, and JKD in Y2H assays, and these interactions depend on the first zinc finger in MGP. MGP appears to be a direct transcriptional target of SHR and SCR, based on promoter binding assays, though it is not expressed in the QC, based on in situ hybridizations.	O.I.	C.G.	H.G.
59.3	99.8	33.3	At2g23050	816835	NPY4 (NAKED PINS IN YUC MUTANTS 4)	A member of the NPY gene family (NPY1/AT4G31820, NPY2/AT2G14820, NPY3/AT5G67440, NPY4/AT2G23050, NPY5/AT4G37590). Involved in auxin-mediated organogenesis.	O.I.	C.G.	H.G.
55.8	99.8	193.6	At2g41800	818779	-	F:molecular_function unknown;P:biological_process unknown;C:cell wall, plant-type cell wall;P	O.I.	C.G.	H.G.
49.7	99.8	190.8	At1g50060	841430	pathogenesis-related protein, putative	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFOB	O.I.	C.G.	H.G.
48.5	99.8	28.2	At3g62760	825451	ATGSTF13	Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002).	O.I.	C.G.	H.G.
48.2	99.8	382.5	At5g54370	835525	late embryogenesis abundant protein-related / LEA protein-related	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
47.9	99.8	37.4	At5g57980	835909	RPB5C (RNA POLYMERASE II FIFTH LARGEST SUBUNIT, C)	NRPB5-like protein of unknown function; homologous to budding yeast RPB5	O.I.	C.G.	H.G.
44.0	99.8	116.7	At1g63050	842608	membrane bound O-acyl transferase (MBOAT) family protein	F:acyltransferase activity;P:biological_process unknown;C:endomembrane system, membrane;MFOBP	O.I.	C.G.	H.G.
41.1	99.8	370.3	At3g57150	824882	NAP57 (Arabidopsis thaliana homologue of NAP57)	Encodes a putative pseudouridine synthase (NAP57).	O.I.	C.G.	H.G.
40.8	99.8	33.9	At3g15240	820755	-	-	O.I.	C.G.	H.G.
40.6	99.8	88.8	At4g38410	829998	dehydrin, putative	F:molecular_function unknown;P:response to water, response to stress;C:cellular_component unknown;POMFBA	O.I.	C.G.	H.G.
40.3	99.8	54.4	At5g59240	836042	40S ribosomal protein S8 (RPS8B)	F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic small ribosomal subunit, cytosolic ribosome, ribosome, membrane;MAOFP	O.I.	C.G.	H.G.
40.0	99.8	20.6	At3g30350	822736	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
38.6	99.8	178.4	At5g62340	836355	invertase/pectin methylesterase inhibitor family protein	F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
38.2	99.8	85.1	At4g37160	829870	sks15 (SKU5 Similar 15)	F:oxidoreductase activity, copper ion binding;P:unknown;C:endomembrane system;FBPMOA	O.I.	C.G.	H.G.
38.0	99.8	148.9	At3g05060	819668	SAR DNA-binding protein, putative	SAR DNA-binding protein, putative, strong similarity to SAR DNA-binding protein-1 (Pisum sativum) GI:3132696; contains Pfam profile PF01798: Putative snoRNA binding domain; encodes NOP58-like protein	O.I.	C.G.	H.G.
36.5	99.7	118.1	At5g08620	830763	STRS2 (STRESS RESPONSE SUPPRESSOR 2)	Similar in sequence to DEAD-box RNA helicases. Binds RNA. Involved in drought, salt and cold stress responses.	O.I.	C.G.	H.G.
35.8	99.7	39.4	At1g33750	840266	terpene synthase/cyclase family protein	F:lyase activity, magnesium ion binding;P:metabolic process;C:unknown;PO	O.I.	C.G.	H.G.
35.2	99.7	23.8	At2g43480	818949	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOM	O.I.	C.G.	H.G.
34.5	99.7	41.8	At2g34570	818021	MEE21 (maternal effect embryo arrest 21)	F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:unknown;MFOP	O.I.	C.G.	H.G.
34.1	99.7	68.3	At3g12270	820407	PRMT3 (PROTEIN ARGININE METHYLTRANSFERASE 3)	F:methyltransferase activity, zinc ion binding;P:metabolic process;C:intracellular;MBOFPA	O.I.	C.G.	H.G.
34.0	99.7	45.3	At1g06720	837182	-	F:unknown;P:ribosome biogenesis;C:nucleus;OMFBPVA	O.I.	C.G.	H.G.
33.8	99.7	60.8	At5g13520	831196	peptidase M1 family protein	F:metallopeptidase activity, binding, zinc ion binding;P:proteolysis, leukotriene biosynthetic process;C:cellular_component unknown;BMOFAP	O.I.	C.G.	H.G.
33.3	99.7	82.3	At1g79150	844256	binding	F:binding;P:biological_process unknown;C:cellular_component unknown;OMFBPVA	O.I.	C.G.	H.G.
32.4	99.7	13.6	At5g52170	835293	HDG7 (HOMEODOMAIN GLABROUS 7)	Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family.	O.I.	C.G.	H.G.
31.1	99.7	10.3	At5g40320	834030	DC1 domain-containing protein	F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;POM	O.I.	C.G.	H.G.
30.3	99.7	87.1	At5g27120	832770	SAR DNA-binding protein, putative	SAR DNA-binding protein, putative, strong similarity to SAR DNA-binding protein-1 (Pisum sativum) GI:3132696; contains Pfam profile PF01798: Putative snoRNA binding domain; has similarity to MAR binding NOP58 protein	O.I.	C.G.	H.G.
29.9	99.7	212.5	At1g52060	841635	-	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMOB	O.I.	C.G.	H.G.
29.9	99.7	35.2	At5g14750	831327	ATMYB66 (MYB DOMAIN PROTEIN 66)	Encodes a MyB-related protein containing R2 and R3 repeats, involved in root and hypocotyl epidermal cell fate determination. Loss of function mutations make extra root hairs. Nuclear localized protein is a positive regulator for expression of CAPRICE (CPC).	O.I.	C.G.	H.G.
29.3	99.7	64.5	At2g23630	816895	sks16 (SKU5 Similar 16)	F:pectinesterase activity, copper ion binding;P:unknown;C:endomembrane system;FBPMOA	O.I.	C.G.	H.G.
28.8	99.7	22.4	At1g15480	838118	DNA binding	F:DNA binding;P:biological_process unknown;C:unknown;PMOFAB	O.I.	C.G.	H.G.
28.5	99.7	34.7	At5g48940	834952	leucine-rich repeat transmembrane protein kinase, putative	F:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:unknown;MPOBFVA	O.I.	C.G.	H.G.
28.3	99.7	230.6	At1g56110	842063	NOP56 (Arabidopsis homolog of nucleolar protein Nop56)	NOP56-like protein	O.I.	C.G.	H.G.
28.1	99.7	61.0	At4g29690	829090	type I phosphodiesterase/nucleotide pyrophosphatase family protein	F:hydrolase activity, catalytic activity;P:metabolic process, nucleotide metabolic process;C:endomembrane system;MBOFPAV	O.I.	C.G.	H.G.
28.0	99.7	23.1	At4g40000	830161	NOL1/NOP2/sun family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOMFAP	O.I.	C.G.	H.G.
27.9	99.7	95.5	At4g25340	828637	immunophilin-related / FKBP-type peptidyl-prolyl cis-trans isomerase-related	F:FK506 binding, peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:nucleolus;MOBFPVA	O.I.	C.G.	H.G.
27.8	99.7	183.5	At3g19130	821447	ATRBP47B (RNA-binding protein 47B)	F:RNA binding;P:unknown;C:unknown;MOPFBAV	O.I.	C.G.	H.G.
27.5	99.7	32.5	At4g23590	828459	aminotransferase class I and II family protein	F:1-aminocyclopropane-1-carboxylate synthase activity, pyridoxal phosphate binding, transferase activity, transferring nitrogenous groups, transaminase activity, catalytic activity;P:cellular amino acid and derivative metabolic process, biosynthetic process;C:cellular_component unknown;BOPMAF	O.I.	C.G.	H.G.
26.8	99.7	318.3	At4g15910	827273	ATDI21 (ARABIDOPSIS THALIANA DROUGHT-INDUCED 21)	encodes a gene whose transcript level in root and leaves increases to progressive drought stress. The transcript level is also affected by changes of endogenous or exogenous abscisic acid level. It appears to be a member of plant-specific gene family that includes late embryo-abundant and zinc- IAA-induced proteins in other plants.	O.I.	C.G.	H.G.
26.7	99.7	75.2	At2g45730	819181	eukaryotic initiation factor 3 gamma subunit family protein	F:translation initiation factor activity;P:translational initiation, regulation of translational initiation;C:cellular_component unknown;MFOP	O.I.	C.G.	H.G.
26.0	99.7	46.5	At5g48110	834863	terpene synthase/cyclase family protein	F:lyase activity, magnesium ion binding;P:metabolic process;C:chloroplast;PMO	O.I.	C.G.	H.G.
25.8	99.7	39.2	At1g31950	840085	terpene synthase/cyclase family protein	F:lyase activity, magnesium ion binding;P:metabolic process;C:membrane;PO	O.I.	C.G.	H.G.
25.4	99.6	64.4	At4g31810	829310	enoyl-CoA hydratase/isomerase family protein	F:3-hydroxyisobutyryl-CoA hydrolase activity, catalytic activity;P:fatty acid beta-oxidation, metabolic process;C:mitochondrion;BOMFPA	O.I.	C.G.	H.G.
24.7	99.6	24.8	At3g57360	824903	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MP	O.I.	C.G.	H.G.
24.2	99.6	191.9	At4g31290	829256	ChaC-like family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOMFP	O.I.	C.G.	H.G.
24.0	99.6	38.1	At5g45140	834550	NRPC2	Encodes a subunit of RNA polymerase III (aka RNA polymerase C).	O.I.	C.G.	H.G.
23.5	99.6	26.3	At1g56680	842124	glycoside hydrolase family 19 protein	F:chitinase activity;P:cell wall macromolecule catabolic process;C:endomembrane system;PBOMFV	O.I.	C.G.	H.G.
22.9	99.6	288.4	At3g03920	821062	Gar1 RNA-binding region family protein	F:RNA binding, rRNA binding;P:rRNA processing;C:chloroplast thylakoid membrane, nucleolus;MPBOFVA	O.I.	C.G.	H.G.
22.9	99.6	275.6	At4g25630	828668	FIB2 (FIBRILLARIN 2)	encodes a fibrillarin, a key nucleolar protein in eukaryotes which associates with box C/D small nucleolar RNAs (snoRNAs) directing 2'-O-ribose methylation of the rRNA. This gene also encodes a novel box C/D snoRNA, U60.2f in its fifth intron that accumulates in seedlings and that their targeted residue on the 25 S rRNA is methylated.	O.I.	C.G.	H.G.
22.8	99.6	69.2	At5g19520	832072	MSL9 (MECHANOSENSITIVE CHANNEL OF SMALL CONDUCTANCE-LIKE 9)	F:mechanically-gated ion channel activity;P:detection of mechanical stimulus;C:nucleus, plasma membrane, membrane;BOFPAV	O.I.	C.G.	H.G.
22.7	99.6	58.3	At2g19670	816486	PRMT1A (PROTEIN ARGININE METHYLTRANSFERASE 1A)	F:protein-arginine N-methyltransferase activity;P:unknown;C:unknown;MBOPFA	O.I.	C.G.	H.G.
22.6	99.6	9.1	At2g16230	816120	catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFO	O.I.	C.G.	H.G.
22.0	99.6	34.0	At2g18220	816337	-	F:unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBVA	O.I.	C.G.	H.G.
21.7	99.6	57.4	At5g57280	835833	methyltransferase	F:methyltransferase activity;P:metabolic process;C:unknown;BOMFPA	O.I.	C.G.	H.G.
21.6	99.6	25.3	At1g07290	837240	nucleotide-sugar transmembrane transporter	F:nucleotide-sugar transmembrane transporter activity;P:biological_process unknown;C:cellular_component unknown;MFPO	O.I.	C.G.	H.G.
21.2	99.6	124.6	At1g63660	842670	GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative	F:catalytic activity, GMP synthase (glutamine-hydrolyzing) activity, ATP binding;P:in 6 processes;C:unknown;OBAFMP	O.I.	C.G.	H.G.
20.9	99.6	107.0	At5g57990	835910	UBP23 (UBIQUITIN-SPECIFIC PROTEASE 23)	Encodes a ubiquitin-specific protease.	O.I.	C.G.	H.G.
20.9	99.6	87.8	At5g55920	835690	nucleolar protein, putative	F:S-adenosylmethionine-dependent methyltransferase activity, RNA binding;P:rRNA processing;C:nucleolus;BMOFPVA	O.I.	C.G.	H.G.
20.7	99.6	202.2	At2g40360	818629	transducin family protein / WD-40 repeat family protein	F:nucleotide binding;P:rRNA processing;C:nucleus;BMOFPVA	O.I.	C.G.	H.G.
20.4	99.6	51.5	At2g43600	818962	glycoside hydrolase family 19 protein	F:chitin binding, chitinase activity;P:cell wall macromolecule catabolic process;C:endomembrane system;PBOMFV	O.I.	C.G.	H.G.
20.3	99.6	69.8	At1g61580	842454	RPL3B (R-PROTEIN L3 B)	F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome, membrane;BOMAPFV	O.I.	C.G.	H.G.
20.1	99.6	73.3	At4g30930	829217	NFD1 (NUCLEAR FUSION DEFECTIVE 1)	Encodes a ribosomal RPL21M protein that is localized to the mitochondrion and is involved in karyogamy during female gametophyte development and fertilization. Mutants display defects in both male and female gametophyte development (i.e.collapsed pollen and female gametophytes with unfused central cells).	O.I.	C.G.	H.G.
20.0	99.6	94.4	At4g30800	829203	40S ribosomal protein S11 (RPS11B)	F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit;MOBAFP	O.I.	C.G.	H.G.
19.9	99.6	88.4	At1g80270	844367	DNA-binding protein, putative	F:DNA binding;P:biological_process unknown;C:chloroplast envelope;POMF	O.I.	C.G.	H.G.
19.4	99.6	88.8	At3g55010	824667	PUR5	encoding phosphoribosylformylglycinamidine cyclo-ligase (syn. AIR synthetase)that phosphorylates 5-phosphoribosyl-N-formylglycinamidine (FGAM) to form 5-aminoimidazole ribonucleotide (AIR)	O.I.	C.G.	H.G.
19.1	99.6	34.1	At3g52390	824404	tatD-related deoxyribonuclease family protein	F:endodeoxyribonuclease activity, producing 5'-phosphomonoesters, deoxyribonuclease activity;P:biological_process unknown;C:cellular_component unknown;BOMFAP	O.I.	C.G.	H.G.
19.1	99.6	30.3	At5g56220	835721	nucleoside-triphosphatase/ nucleotide binding	F:nucleoside-triphosphatase activity, nucleotide binding;P:unknown;C:chloroplast;OPMBFVA	O.I.	C.G.	H.G.
18.8	99.5	63.6	At2g28600	817408	ATP binding / ATP-dependent helicase/ nucleic acid binding	F:nucleic acid binding, ATP binding, ATP-dependent helicase activity;P:biological_process unknown;C:cellular_component unknown;BOMFPAV	O.I.	C.G.	H.G.
18.6	99.5	215.4	At5g60530	836174	late embryogenesis abundant protein-related / LEA protein-related	F:molecular_function unknown;P:unknown;C:endomembrane system;MOFBPVA	O.I.	C.G.	H.G.
18.6	99.5	99.2	At5g10130	830877	pollen Ole e 1 allergen and extensin family protein	F:molecular_function unknown;P:biological_process unknown;C:extracellular space, endomembrane system;P	O.I.	C.G.	H.G.
18.6	99.5	75.8	At1g73940	843731	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
18.5	99.5	111.1	At5g02050	831729	mitochondrial glycoprotein family protein / MAM33 family protein	F:unknown;P:biological_process unknown;C:chloroplast, mitochondrial matrix;PFOMB	O.I.	C.G.	H.G.
18.5	99.5	86.1	At3g27280	822347	ATPHB4 (PROHIBITIN 4)	Part of protein complexes that are necessary for proficient mitochondrial function or biogenesis, thereby supporting cell division and differentiation in apical tissues	O.I.	C.G.	H.G.
18.5	99.5	29.3	At1g29270	839801	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
18.4	99.5	52.1	At2g20515	816573	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
18.3	99.5	345.8	At3g51800	824343	ATG2	putative nuclear DNA-binding protein G2p (AtG2) mRNA,	O.I.	C.G.	H.G.
18.3	99.5	39.2	At4g11120	826713	translation elongation factor Ts (EF-Ts), putative	F:translation elongation factor activity;P:translational elongation;C:mitochondrion;BOPMF	O.I.	C.G.	H.G.
18.2	99.5	11.3	At4g11780	826784	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;MOFPB	O.I.	C.G.	H.G.
18.0	99.5	44.2	At5g17160	831580	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;OMBFPVA	O.I.	C.G.	H.G.
18.0	99.5	32.9	At5g09300	830789	2-oxoisovalerate dehydrogenase, putative / 3-methyl-2-oxobutanoate dehydrogenase, putative / branched-chain alpha-keto acid dehydrogenase E1 alpha subunit, putative	F:oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity;P:metabolic process;C:mitochondrion;BOMFPA	O.I.	C.G.	H.G.
17.9	99.5	60.6	At5g57090	835813	EIR1 (ETHYLENE INSENSITIVE ROOT 1)	Encodes an auxin efflux carrier that is similar to bacterial membrane transporters. Root-specific role in the transport of auxin. Acts downstream of CTR1 and ethylene biosynthesis, in the same pathway as EIN2 and AUX1, and independent from EIN3 and EIN5/AIN1 pathway. In the root, the protein localizes apically in epidermal and lateral root cap cells and predominantly basally in cortical cells. Functions may be regulated by phosphorylation status. EIR1 expression is induced by brassinolide treatment in the brassinosteroid-insensitive br1 mutant. Gravistimulation resulted in asymmetric PIN2 distribution, with more protein degraded at the upper side of the gravistimulated root. Protein turnover is affected by the proteasome and by endosomal cycling. Plasma membrane-localized PIN proteins mediate a saturable efflux of auxin. PINs mediate auxin efflux from mammalian and yeast cells without needing additional plant-specific factors. The action of PINs in auxin efflux is distinct from PGPs, rate-limiting, specific to auxins and sensitive to auxin transport inhibitors. Membrane sterol composition is essential for the acquisition of PIN2 polarity.	O.I.	C.G.	H.G.
17.9	99.5	42.4	At5g48240	834877	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:nucleolus;MOFPB	O.I.	C.G.	H.G.
17.9	99.5	13.0	At1g51190	841542	PLT2 (PLETHORA 2)	Encodes a member of the AINTEGUMENTA-like (AIL) subclass of the AP2/EREBP family of transcription factors and is essential for quiescent center (QC) specification and stem cell activity. It is a key effector for establishment of the stem cell niche during embryonic pattern formation. It is transcribed in response to auxin accumulation and is dependent on auxin response transcription factors.	O.I.	C.G.	H.G.
17.7	99.5	105.8	At1g22880	838893	CEL5 (CELLULASE 5)	F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:cell wall, plasma membrane, plant-type cell wall;PBMOF	O.I.	C.G.	H.G.
17.7	99.5	34.1	At1g13160	837874	SDA1 family protein	F:binding;P:biological_process unknown;C:cellular_component unknown;BMOFPVA	O.I.	C.G.	H.G.
17.5	99.5	21.4	At5g52380	835314	zinc knuckle (CCHC-type) family protein	F:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MFVOP	O.I.	C.G.	H.G.
17.2	99.5	82.5	At4g35850	829739	pentatricopeptide (PPR) repeat-containing protein	F:molecular_function unknown;P:unknown;C:mitochondrion;POMFBA	O.I.	C.G.	H.G.
17.1	99.5	119.3	At1g74030	843741	enolase, putative	F:phosphopyruvate hydratase activity;P:in 12 processes;C:phosphopyruvate hydratase complex, chloroplast;OBMFAP	O.I.	C.G.	H.G.
16.9	99.5	75.3	At2g15000	815989	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
16.6	99.5	98.1	At1g64880	842796	ribosomal protein S5 family protein	F:structural constituent of ribosome, RNA binding;P:translation;C:ribosome, Golgi apparatus, intracellular;OBMFAPV	O.I.	C.G.	H.G.
16.5	99.5	18.8	At1g30960	839983	GTP-binding protein (ERG)	F:RNA binding, GTP binding;P:unknown;C:cytosol;BOMPFA	O.I.	C.G.	H.G.
16.5	99.5	9.8	At5g15725	831428	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
16.4	99.5	66.4	At1g02810	838078	pectinesterase family protein	F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMO	O.I.	C.G.	H.G.
16.4	99.5	44.0	At2g47790	819391	transducin family protein / WD-40 repeat family protein	F:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;MFBOPA	O.I.	C.G.	H.G.
16.2	99.5	95.9	At4g32720	829408	AtLa1 (Arabidopsis thaliana La protein 1)	Encodes AtLa1, a member of the highly abundant phosphoprotein La proteins. Predominantly localized to the nucleoplasm and was also detected in the nucleolar cavity. Has RNA binding activity. Required for normal ribosome biogenesis and embryogenesis.	O.I.	C.G.	H.G.
16.2	99.5	87.9	At4g31120	829240	SKB1 (SHK1 BINDING PROTEIN 1)	Involved in vernalization. Required for epigenetic silencing of FLC, and for vernalization-mediated histone modification.	O.I.	C.G.	H.G.
16.2	99.5	32.6	At3g11520	820325	CYCB1	Encodes a B-type mitotic cyclin.	O.I.	C.G.	H.G.
16.2	99.5	20.6	At5g05680	830452	nuclear pore complex protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBA	O.I.	C.G.	H.G.
15.9	99.5	28.8	At4g37090	829863	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBVA	O.I.	C.G.	H.G.

Back to the CoP portal site

Back to the KAGIANA project homepage

GSM ID	GSM133976
Assay name	Birnbaum_1-6_StageI-3_Rep3_ATH1
GSE experiment	GSE5749: A gene expression map of the Arabidopsis root

Microarray experiments to specifically-expressed genes

GSM ID GSM133976 Assay name Birnbaum_1-6_StageI-3_Rep3_ATH1 GSE experiment GSE5749: A gene expression map of the Arabidopsis root

GSM ID GSM133976

Assay name Birnbaum_1-6_StageI-3_Rep3_ATH1

GSE experiment GSE5749: A gene expression map of the Arabidopsis root