Microarray experiments to specifically-expressed genes

GSM ID GSM133973
Assay name Birnbaum_1-3_src5-3_Rep3_ATH1
GSE experiment GSE5749: A gene expression map of the Arabidopsis root

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
617.0100.074.4At1g44414841028unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
417.6100.047.7At5g45210834557disease resistance protein (TIR-NBS-LRR class), putativeF:protein binding, transmembrane receptor activity, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PBOMAFO.I.C.G.H.G.
365.0100.0246.6At1g76640843997calmodulin-related protein, putativeF:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;MPFOBVO.I.C.G.H.G.
280.6100.0140.4At2g30130817565ASL5Overexpression/activation tagged allele has epinastic leaves, reduced apical dominance and is sterile. Gene is similar to asymmetric leaves (AS)/lateral organ boundary (LOB) genes which repress KNOX gene expression.O.I.C.G.H.G.
255.0100.042.7At5g53680835449RNA recognition motif (RRM)-containing proteinF:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPOFBO.I.C.G.H.G.
223.1100.087.6At1g09090837430ATRBOHB (respiratory burst oxidase homolog B)F:in 7 functions;P:response to heat, defense response;C:integral to membrane, membrane;MPFOBAO.I.C.G.H.G.
216.7100.083.9At2g23560816888MES7 (METHYL ESTERASE 7)Encodes a protein shown to have carboxylesterase activity, methyl salicylate esterase activity, and methyl IAA esterase activity in vitro. This protein does not act on methyl JA, MeGA4, or MEGA9 in vitro. MES7 appears to be involved in MeSA hydrolysis in planta. Expression of MES7 can restore systemic acquired resistance in SAR-deficient tobacco plants.O.I.C.G.H.G.
162.899.9181.6At2g32300817791UCC1 (UCLACYANIN 1)Encodes a uclacyanin, a protein precursor that is closely related to precursors of stellacyanins and a blue copper protein from pea pods.O.I.C.G.H.G.
161.699.9170.3At5g59490836068haloacid dehalogenase-like hydrolase family proteinF:hydrolase activity, catalytic activity;P:metabolic process;C:cellular_component unknown;OBPFAO.I.C.G.H.G.
140.199.918.1At2g18620816377geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putativeF:unknown;P:isoprenoid biosynthetic process;C:unknown;OBPFAMVO.I.C.G.H.G.
134.399.9112.5At5g07870830680transferase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFOO.I.C.G.H.G.
129.899.9225.6At1g17190838290ATGSTU26 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 26)Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).O.I.C.G.H.G.
111.499.9212.0At2g29440817493ATGSTU6 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 6)Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).O.I.C.G.H.G.
111.299.998.6At5g13910831238LEP (LEAFY PETIOLE)Encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (LEAFY PETIOLE). The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and LEAFY PETIOLE. Acts as a positive regulator of gibberellic acid-induced germination.O.I.C.G.H.G.
98.699.985.8At4g37710829927VQ motif-containing proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.C.G.H.G.
97.399.9221.5At3g11550820328integral membrane family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
97.399.971.0At5g09980830859PROPEP4 (Elicitor peptide 4 precursor)F:molecular_function unknown;P:response to jasmonic acid stimulus;C:endomembrane system;PO.I.C.G.H.G.
91.199.9389.7At1g05260837028RCI3 (RARE COLD INDUCIBLE GENE 3)Encodes a cold-inducible cationic peroxidase that is involved in the stress response. In response to low temperature, RCI3 transcripts accumulate in the aerial part and in roots of etiolated seedlings but only in roots of light-grown seedlings.O.I.C.G.H.G.
91.099.9170.5At2g16900816192-F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;POMVFBAO.I.C.G.H.G.
88.099.9140.6At2g27370817280integral membrane family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
87.999.9156.4At2g39430818528disease resistance-responsive protein-related / dirigent protein-relatedF:molecular_function unknown;P:lignan biosynthetic process;C:endomembrane system;PABFOO.I.C.G.H.G.
87.899.9231.4At4g11290826731peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBO.I.C.G.H.G.
86.599.9208.9At1g69930843329ATGSTU11 (GLUTATHIONE S-TRANSFERASE TAU 11)Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).O.I.C.G.H.G.
85.599.932.8At1g607503767587oxidoreductaseF:oxidoreductase activity;P:oxidation reduction;C:unknownO.I.C.G.H.G.
84.599.955.9At3g49840824146unknown proteinF:unknown;P:unknown;C:endomembrane system;PBMO.I.C.G.H.G.
84.299.9130.6At5g07860830679transferase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFOO.I.C.G.H.G.
82.499.9167.8At2g30210817571LAC3 (laccase 3)putative laccase, a member of laccase family of genes (17 members in Arabidopsis).O.I.C.G.H.G.
82.299.9141.1At1g71740843504unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
81.999.998.1At5g06200830507integral membrane family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
80.899.950.8At1g44318841025hemb2F:porphobilinogen synthase activity, catalytic activity, metal ion binding;P:porphyrin biosynthetic process;C:unknown;OBMFAPO.I.C.G.H.G.
79.599.9238.3At3g09940820155MDHAR (MONODEHYDROASCORBATE REDUCTASE)Encodes a member of the monodehydroascorbate reductase gene family. Critical for a mutualistic symbiosis between the host Arabidopsis and the root colonizing fungus Piriformospora indica.O.I.C.G.H.G.
79.199.946.3At2g26390817179serpin, putative / serine protease inhibitor, putativeF:serine-type endopeptidase inhibitor activity;P:biological_process unknown;C:cellular_component unknown;MVPBOAFO.I.C.G.H.G.
78.699.956.7At3g45070823642sulfotransferase family proteinF:sulfotransferase activity;P:biological_process unknown;C:cellular_component unknown;MOPBFO.I.C.G.H.G.
73.499.9127.7At4g17215827433unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
72.599.932.2At3g49690824131MYB84 (MYB DOMAIN PROTEIN 84)"Putative homolog of the Blind gene in tomato. Together with RAX1 and RAX3 belong to the class R2R3 MYB genes; encoded by the Myb-like transcription factor MYB84, regulates axillary meristem formation. "O.I.C.G.H.G.
67.099.8230.7At4g26320828738AGP13 (arabinogalactan protein 13)F:unknown;P:unknown;C:anchored to membrane;PO.I.C.G.H.G.
67.099.894.1At4g29690829090type I phosphodiesterase/nucleotide pyrophosphatase family proteinF:hydrolase activity, catalytic activity;P:metabolic process, nucleotide metabolic process;C:endomembrane system;MBOFPAVO.I.C.G.H.G.
65.599.8281.5At1g74310843771ATHSP101 (ARABIDOPSIS THALIANA HEAT SHOCK PROTEIN 101)Encodes ClpB1, which belongs to the Casein lytic proteinase/heat shock protein 100 (Clp/Hsp100) family. Involved in refolding of proteins which form aggregates under heat stress. Also known as AtHsp101. AtHsp101 is a cytosolic heat shock protein required for acclimation to high temperature.O.I.C.G.H.G.
65.599.885.7At1g13195837878zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;MPOVFO.I.C.G.H.G.
65.099.863.0At5g05220830404unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
64.499.8188.0At2g32120817771HSP70T-2 (HEAT-SHOCK PROTEIN 70T-2)F:ATP binding;P:protein folding, response to high light intensity, response to hydrogen peroxide, response to heat;C:cellular_component unknown;OBMFPAVO.I.C.G.H.G.
59.199.8116.4At4g17615827481CBL1 (CALCINEURIN B-LIKE PROTEIN 1)Member of AtCBL (Calcineurin B-like Calcium Sensor Proteins) family. Protein level is increased upon high salt, mannitol, and cold stresses. CBL1 interacts with CIPK23 and recruits the kinase to the plasma membrane where the substrate(s) of CIPK23 may reside. CBL1 localization is regulated by protein modification including myristolation and acylation.O.I.C.G.H.G.
58.399.8105.1At4g02090827380unknown proteinF:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;PO.I.C.G.H.G.
58.399.815.9At1g72490843581unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFO.I.C.G.H.G.
56.999.861.6At1g14040837965-F:unknown;P:unknown;C:integral to membrane;FMPOO.I.C.G.H.G.
56.699.860.7At1g69920843328ATGSTU12 (GLUTATHIONE S-TRANSFERASE TAU 12)Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).O.I.C.G.H.G.
56.599.894.5At4g20140827760GSO1 (GASSHO1)Encodes GASSHO1 (GSO1), a putative leucine-rich repeat transmembrane-type receptor kinase. GSO1 and a homolog GSO2 (At5g44700) are required for the formation of a normal epidermal surface during embryogenesis.O.I.C.G.H.G.
55.899.8190.6At2g34070817968unknown proteinF:unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
54.699.8120.8At1g14200837980zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVBO.I.C.G.H.G.
54.699.878.2At5g23220832386NIC3 (NICOTINAMIDASE 3)F:nicotinamidase activity, catalytic activity;P:metabolic process;C:unknown;BOAFPO.I.C.G.H.G.
54.399.8208.9At1g30750839955unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OBMFPVO.I.C.G.H.G.
51.399.8196.5At5g12020831075HSP17.6II (17.6 KDA CLASS II HEAT SHOCK PROTEIN)F:unknown;P:response to heat;C:cellular_component unknown;BPOFAMO.I.C.G.H.G.
51.399.839.9At2g40160818607-F:unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
50.099.8365.2At2g36100818183integral membrane family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
49.899.840.3At4g40080830171epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-relatedF:phospholipid binding, binding;P:biological_process unknown;C:chloroplast;PMOO.I.C.G.H.G.
49.299.8101.4At5g35320833486unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
48.499.8138.5At2g47060819320serine/threonine protein kinase, putativeF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MPOBFVAO.I.C.G.H.G.
48.399.85.7At5g59580836077UGT76E1 (UDP-GLUCOSYL TRANSFERASE 76E1)F:quercetin 3-O-glucosyltransferase activity, quercetin 7-O-glucosyltransferase activity, UDP-glycosyltransferase activity;P:metabolic process;C:unknown;PMBVOFO.I.C.G.H.G.
48.199.843.2At2g28650817414ATEXO70H8 (exocyst subunit EXO70 family protein H8)A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.O.I.C.G.H.G.
47.299.835.6At4g25380828641zinc finger (AN1-like) family proteinF:DNA binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MPOVFO.I.C.G.H.G.
47.199.8138.2At1g5256084168726.5 kDa class I small heat shock protein-like (HSP26.5-P)F:molecular_function unknown;P:response to high light intensity, response to hydrogen peroxide, response to heat;C:mitochondrion;BPOFAMVO.I.C.G.H.G.
46.599.8194.7At3g09350820091armadillo/beta-catenin repeat family proteinF:binding;P:biological_process unknown;C:cellular_component unknown;MFPOO.I.C.G.H.G.
45.799.8265.1At2g28670817416disease resistance-responsive family protein / fibroin-relatedF:molecular_function unknown;P:unknown;C:endomembrane system;BMOPFVAO.I.C.G.H.G.
45.099.8123.1At2g01150814644RHA2B (RING-H2 FINGER PROTEIN 2B)Encodes a RING-H2 finger protein that is expressed in vascular tissue, root tips, embryos and pistils.O.I.C.G.H.G.
44.499.862.5At1g50630841485unknown proteinF:unknown;P:unknown;C:unknown;POO.I.C.G.H.G.
44.399.838.2At2g26380817178disease resistance protein-related / LRR protein-relatedF:protein binding;P:signal transduction, defense response;C:endomembrane system;PMOBFAVO.I.C.G.H.G.
43.799.8254.2At1g5354084178917.6 kDa class I small heat shock protein (HSP17.6C-CI) (AA 1-156)F:unknown;P:response to heat;C:cellular_component unknown;BPOFAMO.I.C.G.H.G.
43.799.852.7At3g08970820049ATERDJ3AJ domain protein localized in ER lumen. Can compensate for the growth defect in jem1 scj1 mutant yeast. Also shows similarity to HSP40 proteins and is induced by heat stress. At high temperatures, mutant alleles are not transmitted through the pollen due to defects in pollen tube growth.O.I.C.G.H.G.
43.599.8220.7At2g14900815979gibberellin-regulated family proteinF:molecular_function unknown;P:response to gibberellin stimulus;C:endomembrane system;PO.I.C.G.H.G.
42.599.823.8At3g57120824879protein kinase family proteinF:protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;PMOBFVAO.I.C.G.H.G.
42.499.8193.8At5g66390836771peroxidase 72 (PER72) (P72) (PRXR8)F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBO.I.C.G.H.G.
42.299.8239.1At1g16030838174Hsp70b (heat shock protein 70B)F:ATP binding;P:protein folding, response to heat;C:cytosol, cell wall, plasma membrane, chloroplast, membrane;BOMFPVAO.I.C.G.H.G.
42.099.8326.5At3g44190823541pyridine nucleotide-disulphide oxidoreductase family proteinF:electron carrier activity, oxidoreductase activity, FAD binding;P:unknown;C:unknown;BOFAMPO.I.C.G.H.G.
41.699.825.0At5g57190835825PSD2 (phosphatidylserine decarboxylase 2)Encodes the minor form of the two non-mitochondrail phosphatidylserine decarboxylase. The gene expression level is very low. Located at the tonoplast.O.I.C.G.H.G.
40.999.8246.6At1g50740841496unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system, membrane;MPBOFO.I.C.G.H.G.
40.999.830.6At5g65790836708MYB68 (MYB DOMAIN PROTEIN 68)Encodes a putative MYB transcription factor.O.I.C.G.H.G.
40.899.848.6At2g43500818951RWP-RK domain-containing proteinF:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;PBOMFO.I.C.G.H.G.
40.799.8203.8At1g5405084184317.4 kDa class III heat shock protein (HSP17.4-CIII)F:molecular_function unknown;P:response to high light intensity, response to hydrogen peroxide, response to heat;C:unknown;BPOFAMO.I.C.G.H.G.
40.799.862.4At5g63970836518copine-relatedF:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MOPVO.I.C.G.H.G.
40.699.8116.2At2g18210816336unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
40.299.8136.6At1g05620837068URH2 (URIDINE-RIBOHYDROLASE 2)F:hydrolase activity;P:biological_process unknown;C:cellular_component unknown;BOMFPAO.I.C.G.H.G.
40.299.8132.4At1g30070839886SGS domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MOPFO.I.C.G.H.G.
40.099.862.5At1g764708439803-beta-hydroxy-delta5-steroid dehydrogenase/ binding / catalytic/ cinnamoyl-CoA reductaseF:3-beta-hydroxy-delta5-steroid dehydrogenase activity, binding, cinnamoyl-CoA reductase activity, catalytic activity;P:lignin biosynthetic process, steroid biosynthetic process, metabolic process;C:endomembrane system;OBPFMAVO.I.C.G.H.G.
39.899.8297.9At3g22620821833protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:chloroplast envelope;POBMFVO.I.C.G.H.G.
39.899.8117.4At3g28210822447PMZEncodes a putative zinc finger protein (PMZ).O.I.C.G.H.G.
39.699.8270.5At5g12030831076AT-HSP17.6A (ARABIDOPSIS THALIANA HEAT SHOCK PROTEIN 17.6A)Encodes a cytosolic small heat shock protein with chaperone activity that is induced by heat and osmotic stress and is also expressed late in seed development.O.I.C.G.H.G.
39.599.8163.9At4g25200828623ATHSP23.6-MITO (MITOCHONDRION-LOCALIZED SMALL HEAT SHOCK PROTEIN 23.6)AtHSP23.6-mito mRNA, nuclear gene encoding mitochondrialO.I.C.G.H.G.
39.499.8226.0At5g42180834223peroxidase 64 (PER64) (P64) (PRXR4)F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:plant-type cell wall;PFOBMO.I.C.G.H.G.
39.099.8151.3At2g46240819232BAG6 (BCL-2-ASSOCIATED ATHANOGENE 6)A member of Arabidopsis BAG (Bcl-2-associated athanogene) proteins, plant homologs of mammalian regulators of apoptosis. Expression of BAG6 in leaves was strongly induced by heat stress. Knockout mutants exhibited enhanced susceptibility to fungal pathogen Botrytis cinerea. Plant BAG proteins are multi-functional and remarkably similar to their animal counterparts, as they regulate apoptotic-like processes ranging from pathogen attack, to abiotic stress, to plant development.O.I.C.G.H.G.
38.899.8105.0At5g62520836372SRO5 (SIMILAR TO RCD ONE 5)Encodes a protein with similarity to RCD1 but without the WWE domain. The protein does have a PARP signature upstream of the C-terminal protein interaction domain. The PARP signature may bind NAD+ and attach the ADP-ribose-moiety from NAD+ to the target molecule. Its presence suggests a role for the protein in ADP ribosylation. Up-regulated by NaCl. SRO5 and P5CDH (an overlapping gene in the antisense orientation) generate 24-nt and 21-nt siRNAs, which together are components of a regulatory loop controlling reactive oxygen species (ROS) production and stress response.O.I.C.G.H.G.
38.799.8163.0At5g02230831784haloacid dehalogenase-like hydrolase family proteinF:hydrolase activity, catalytic activity;P:metabolic process;C:cellular_component unknown;OBPFAO.I.C.G.H.G.
38.699.868.5At3g14200820637DNAJ heat shock N-terminal domain-containing proteinF:heat shock protein binding;P:protein folding;C:cellular_component unknown;BOMFPAVO.I.C.G.H.G.
38.299.8237.8At1g17170838288ATGSTU24 (GLUTATHIONE S-TRANSFERASE TAU 24)Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).O.I.C.G.H.G.
38.299.812.3At5g38790833870unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPMFO.I.C.G.H.G.
37.799.79.3At5g45200834556disease resistance protein (TIR-NBS-LRR class), putativeF:transmembrane receptor activity, protein binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFAO.I.C.G.H.G.
36.499.7223.9At3g60450825216-F:unknown;P:biological_process unknown;C:cellular_component unknown;BOFPMO.I.C.G.H.G.
36.399.7143.1At2g19570816476CDA1 (CYTIDINE DEAMINASE 1)Encodes a cytidine deaminase that deaminates cytidine and deoxycytidine and is competitively inhibited by cytosine-containing compounds.O.I.C.G.H.G.
35.299.7125.7At4g11190826721disease resistance-responsive family protein / dirigent family proteinF:molecular_function unknown;P:lignan biosynthetic process, defense response;C:endomembrane system;PO.I.C.G.H.G.
35.199.715.9At4g21340827884B70F:transcription factor activity;P:regulation of transcription, DNA-dependent, regulation of transcription;C:nucleus, intracellular;PO.I.C.G.H.G.
34.499.7175.0At4g36990829853HSF4 (HEAT SHOCK FACTOR 4)encodes a protein whose sequence is similar to heat shock factors that regulate the expression of heat shock proteins. Transcript level is increased in response to heat shock. However, overexpression of this gene did not result in the increase of decrease of heat shock proteins.O.I.C.G.H.G.



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