Microarray experiments to specifically-expressed genes

GSM ID GSM133965
Assay name Fukuda_1-10_8B_Rep2_ATH1
GSE experiment GSE5748: In vitro tracheary element transdifferentiation of Col-0 suspension cells.

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
523.9100.0145.4At5g59700836091protein kinase, putativeF:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVAO.I.C.G.H.G.
474.7100.0160.5At1g70500843386polygalacturonase, putative / pectinase, putativeF:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMAO.I.C.G.H.G.
472.4100.0162.6At1g24030839015protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MPOBFVAO.I.C.G.H.G.
342.4100.0150.1At1g23460838954polygalacturonaseF:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMAO.I.C.G.H.G.
282.7100.064.3At1g10800837623unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
282.2100.080.2At2g38320818412unknown proteinF:unknown;P:biological_process unknown;C:endomembrane system;PMOO.I.C.G.H.G.
277.5100.0108.9At1g67600843081-F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BOPO.I.C.G.H.G.
267.4100.0103.4At2g34790818044MEE23 (MATERNAL EFFECT EMBRYO ARREST 23)F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:embryonic development ending in seed dormancy, polar nucleus fusion;C:cell wall;BFPOAMO.I.C.G.H.G.
255.0100.037.7At5g56370835738F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
239.1100.0132.9At5g12400831115PHD finger transcription factor, putativeF:protein binding, DNA binding, zinc ion binding;P:regulation of transcription, DNA-dependent;C:nucleus;MPOFBO.I.C.G.H.G.
224.7100.0109.6At1g67420843062peptidaseF:peptidase activity;P:proteolysis;C:endomembrane system;MBFOPAO.I.C.G.H.G.
216.2100.0140.3At5g07080830599transferase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFOO.I.C.G.H.G.
212.2100.0222.0At2g03200814849aspartyl protease family proteinF:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;PFMOO.I.C.G.H.G.
206.6100.076.7At1g75520843888SRS5 (SHI-RELATED SEQUENCE 5)A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis.O.I.C.G.H.G.
206.1100.0104.3At4g08160826365glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing proteinEncodes a putative glycosyl hydrolase family 10 protein (xylanase).O.I.C.G.H.G.
203.7100.050.0At5g25290832601F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
193.5100.0180.4At5g13300831171SFC (SCARFACE)Belongs to 15-member small GTPase gene family, ARF-GAP domain proteins (AGD); corresponds to AGD3, and is one of four proteins belonging to class 1, together with AGD1, AGD2 and AGD4. The protein contains four domains: BAR domain, PH domain, an ARF-GAP domain, and two Ankyrin repeats. In sfc mutants, the secondary and tertiary veins of cotyledons, leaves, sepals and petals are largely replaced by small segments of discontinuous veins. sfc mutants have exaggerated responses to auxin.O.I.C.G.H.G.
181.8100.075.2At1g47230841126cyclin, putativeF:cyclin-dependent protein kinase regulator activity;P:regulation of cell cycle;C:nucleus;MPOFVO.I.C.G.H.G.
178.6100.0133.4At1g67620843083-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOMPO.I.C.G.H.G.
174.4100.036.6At1g77655844101unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
173.4100.046.3At5g08600830761U3 ribonucleoprotein (Utp) family proteinF:molecular_function unknown;P:rRNA processing;C:small-subunit processome;OMFBPVAO.I.C.G.H.G.
172.1100.068.6At5g12350831110Ran GTPase binding / chromatin binding / zinc ion bindingF:chromatin binding, zinc ion binding, Ran GTPase binding;P:unknown;C:plasma membrane;MOBPFAVO.I.C.G.H.G.
171.6100.0189.1At5g18830832001SPL7 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 7)Encodes a member of the Squamosa Binding Protein family of transcriptional regulators. SPL7 is expressed highly in roots and appears to play a role in copper homeostasis. Mutants are hypersensitive to copper deficient conditions and display a retarded growth phenotype. SPL7 binds to the promoter of the copper responsive miRNAs miR398b and miR389c.O.I.C.G.H.G.
167.8100.051.5At1g69430843275unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
163.599.935.7At5g19870832108unknown proteinF:unknown;P:unknown;C:endomembrane system;MPO.I.C.G.H.G.
163.099.962.3At5g01930831699(1-4)-beta-mannan endohydrolase, putativeF:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFBOAO.I.C.G.H.G.
162.799.9105.9At3g48185823974unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
162.699.940.3At1g67370843058ASY1 (ASYNAPTIC 1)meiotic asynaptic mutant 1 (ASY1). ASY1 protein is initially distributed as numerous foci throughout the chromatin. During early G2, the foci are juxtaposed to the nascent chromosome axes to form a continuous axis associated signal.O.I.C.G.H.G.
160.099.960.3At3g47950823950AHA4mutant has Slight reduction in root and shoot growth; Exaggerated defects in salt stress; Plasma Membrane H+ ATPaseO.I.C.G.H.G.
157.799.9125.1At5g03260831887LAC11 (laccase 11)putative laccase, a member of laccase family of genes (17 members in Arabidopsis).O.I.C.G.H.G.
155.299.991.9At5g65970836727MLO10 (MILDEW RESISTANCE LOCUS O 10)A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO10 belongs to the clade III, with AtMLO5, AtMLO7, AtMLO8, and AtMLO9. The gene is expressed in root and cotyledon vascular system, in root-shoot junction and lateral root primordia and in developing siliques, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(sO.I.C.G.H.G.
154.999.968.2At1g67410843061exostosin family proteinF:catalytic activity;P:biological_process unknown;C:endomembrane system, membrane;PMOBFO.I.C.G.H.G.
151.899.9111.5At1g68810843213basic helix-loop-helix (bHLH) family proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFOBO.I.C.G.H.G.
145.799.917.0At1g69630843299F-box family proteinF:unknown;P:unknown;C:cellular_component unknown;PMO.I.C.G.H.G.
145.399.955.6At3g26680822280SNM1 (SENSITIVE TO NITROGEN MUSTARD 1)involved in a SNM-dependent recombinational repair process of oxidatively induced DNA damage.O.I.C.G.H.G.
144.099.9212.9At5g13330831174Rap2.6L (related to AP2 6L)encodes a member of the ERF (ethylene response factor) subfamily B-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily.O.I.C.G.H.G.
141.799.948.8At3g26850822300-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOVO.I.C.G.H.G.
140.399.979.0At5g51500835224pectinesterase family proteinF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMOO.I.C.G.H.G.
139.999.933.0At3g04420819597anac048 (Arabidopsis NAC domain containing protein 48)F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;POO.I.C.G.H.G.
137.399.9146.7At1g50120841434-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFOO.I.C.G.H.G.
137.299.942.1At1g71930843524VND7 (VASCULAR RELATED NAC-DOMAIN PROTEIN 7)Encodes a NAC-domain transcription factor with transcriptional activation activity that is involved in xylem formation. Induces transdifferentiation of various cells into protoxylem vessel elements. Located in the nucleus. Expression induced in the presence of auxin, cytokinin and brassinosteroids.O.I.C.G.H.G.
133.299.9115.2At1g50240841446--O.I.C.G.H.G.
132.399.934.2At1g62700842568ANAC026Encodes a NAC-domain transcription factor. Expressed in the vascular tissue.O.I.C.G.H.G.
129.999.9216.5At5g26270832696unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPO.I.C.G.H.G.
128.499.992.4At1g50140841436ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide bindingF:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:biological_process unknown;C:cellular_component unknown;BOMFPAVO.I.C.G.H.G.
127.399.9283.2At1g63120842616ATRBL2 (Arabidopsis thaliana Rhomboid-like 2)AtRBL2 has been identified as a rhomboid protein involved in regulated intramembrane proteolysis (RIP). The enzyme has the proteolytic activity and substrate specificity comparable to the Drosophila Rho-1 protein.O.I.C.G.H.G.
125.999.967.5At1g47410841146unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
125.399.9249.6At2g38080818386IRX12 (IRREGULAR XYLEM 12)Encodes a protein with similarity to putative laccase, a member of laccase family (17 members in Arabidopsis). Might be involved in cell wall biosynthesis. Mutants have a mild irregular xylem phenotype.O.I.C.G.H.G.
123.499.9121.2At5g18780831996F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.C.G.H.G.
122.499.975.5At1g68230843152reticulon family protein (RTNLB14)F:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum;PO.I.C.G.H.G.
121.399.968.4At2g38340818414AP2 domain-containing transcription factor, putative (DRE2B)encodes a member of the DREB subfamily A-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are eight members in this subfamily including DREB2A AND DREB2B that are involved in response to drought.O.I.C.G.H.G.
120.899.967.4At1g49980841422DNA-directed DNA polymerase/ damaged DNA bindingF:damaged DNA binding, DNA-directed DNA polymerase activity;P:DNA repair;C:membrane;BOMFAPO.I.C.G.H.G.
120.599.989.3At4g18610827595LSH9 (LIGHT SENSITIVE HYPOCOTYLS 9)F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PMO.I.C.G.H.G.
119.499.925.4At1g76250843958unknown proteinF:unknown;P:biological_process unknown;C:endomembrane system;POMO.I.C.G.H.G.
118.699.9149.6At5g60020836124LAC17 (laccase 17)putative laccase, a member of laccase family of genes (17 members in Arabidopsis).O.I.C.G.H.G.
117.899.9125.2At1g67320843052DNA primase, large subunit familyF:DNA primase activity;P:DNA replication, synthesis of RNA primer;C:alpha DNA polymerase:primase complex;MFOPAO.I.C.G.H.G.
117.199.9100.1At5g40020833999pathogenesis-related thaumatin family proteinF:molecular_function unknown;P:response to other organism;C:endomembrane system;PFMBOO.I.C.G.H.G.
116.999.9101.1At2g37090818285IRX9 (IRREGULAR XYLEM 9)The IRX9 gene encodes a putative family 43 glycosyl transferase. It was coordinately expressed with the cellulose synthase subunits during secondary cell wall formation. Cell wall analysis revealed a decrease in the abundance of xylan in the irx9 mutant, indicating that IRX9 is required for xylan synthesis. Mutants have irregular xylem phenotype suggesting a role in secondary cell wall biosynthesis.O.I.C.G.H.G.
116.199.957.1At2g04230814960F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO.I.C.G.H.G.
114.799.969.2At1g69360843268unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFO.I.C.G.H.G.
113.499.975.0At1g67570843078unknown proteinF:unknown;P:unknown;C:nucleus;POO.I.C.G.H.G.
113.099.9175.5At3g21550821709unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
112.099.943.7At1g43590840943transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
110.599.935.1At1g50700841492CPK33member of Calcium Dependent Protein KinaseO.I.C.G.H.G.
110.499.969.3At5g12260831101-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFBO.I.C.G.H.G.
108.999.9139.9At1g78780844214pathogenesis-related family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBFMO.I.C.G.H.G.
106.199.924.5At4g05370825885-F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
105.799.953.1At5g12870831127MYB46 (MYB DOMAIN PROTEIN 46)Member of the R2R3 factor gene family.O.I.C.G.H.G.
103.399.929.6At5g08480830747VQ motif-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO.I.C.G.H.G.
102.699.988.5At1g72740843606DNA-binding family protein / histone H1/H5 family proteinF:transcription factor activity;P:nucleosome assembly, regulation of transcription;C:nucleus;PMFOO.I.C.G.H.G.
101.499.956.6At3g55890824755yippee family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPOO.I.C.G.H.G.
100.899.9102.6At5g59710836092VIP2 (VIRE2 INTERACTING PROTEIN2)Encodes a nuclear-localized NOT (negative on TATA-less) domain-containing protein that interacts with the Agrobacterium VirE2 protein and is required for Agrobacterium-mediated plant transformation. It likely facilitates T-DNA integration into plant chromosomes and may play a role as a transcriptional regulator.O.I.C.G.H.G.
100.799.988.1At1g55760842025BTB/POZ domain-containing proteinF:protein binding;P:biological_process unknown;C:unknown;MPOVFO.I.C.G.H.G.
98.899.932.0At5g07060830597zinc finger (CCCH-type) family proteinF:RNA binding, zinc ion binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;FMOPVO.I.C.G.H.G.
98.799.949.9At5g08360830734unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.C.G.H.G.
98.199.944.4At5g14470831298GHMP kinase-relatedF:kinase activity, phosphotransferase activity, alcohol group as acceptor, galactokinase activity, ATP binding;P:metabolic process, phosphorylation;C:cytoplasm;BOPAMO.I.C.G.H.G.
97.499.997.9At1g141308379722-oxoglutarate-dependent dioxygenase, putativeF:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity;P:biological_process unknown;C:nucleus;POBFMO.I.C.G.H.G.
97.399.932.1At5g11540831026FAD-binding domain-containing proteinF:D-arabinono-1,4-lactone oxidase activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system, membrane;BOFMPAO.I.C.G.H.G.
96.299.982.9At1g69570843293Dof-type zinc finger domain-containing proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:cellular_component unknown;POMFBO.I.C.G.H.G.
95.599.923.7At2g03360814865transferase, transferring glycosyl groupsF:transferase activity, transferring glycosyl groups;P:biological_process unknown;C:endomembrane system;PMOBFO.I.C.G.H.G.
95.399.958.4At5g08565830757positive transcription elongation factor/ zinc ion bindingF:positive transcription elongation factor activity, zinc ion binding;P:positive regulation of transcription;C:nucleus;MFOPO.I.C.G.H.G.
94.299.9101.7At1g49950841418DNA-binding protein, putativeEncodes a telomeric DNA binding protein. In vitro, an N-terminal Myb domain enables it to interact with double-stranded telomeric repeats.O.I.C.G.H.G.
94.099.9161.5At5g08500830749transmembrane CLPTM1 family proteinF:unknown;P:biological_process unknown;C:unknown;MOFPO.I.C.G.H.G.
94.099.996.7At1g71940843525-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOMPFAO.I.C.G.H.G.
93.699.964.4At5g24280832495-F:unknown;P:unknown;C:unknown;PMOBFO.I.C.G.H.G.
91.899.954.8At4g18550827587lipase class 3 family proteinF:triacylglycerol lipase activity;P:lipid metabolic process;C:cellular_component unknown;PFOBMVO.I.C.G.H.G.
91.699.956.2At1g17960838375threonyl-tRNA synthetase, putative / threonine--tRNA ligase, putativeF:nucleotide binding, aminoacyl-tRNA ligase activity, threonine-tRNA ligase activity, ATP binding;P:threonyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation;C:cytoplasm;BOMFAPO.I.C.G.H.G.
89.499.932.8At5g25820832651exostosin family proteinF:catalytic activity;P:unknown;C:membrane;OMPBFVAO.I.C.G.H.G.
89.099.9199.0At1g26820839225RNS3 (RIBONUCLEASE 3)Encodes ribonuclease RNS3.O.I.C.G.H.G.
88.999.9155.4At2g03470814876myb family transcription factor / ELM2 domain-containing proteinF:DNA binding;P:unknown;C:nucleus;OMFBPVAO.I.C.G.H.G.
88.999.990.0At5g12290831104DGS1 (DGD1 SUPPRESSOR 1)Encodes a mitochondrial outer membrane protein, involved in galactoglycerolipid biosynthesis. The dgd1 mutant phenotype is suppressed in the dgs1 mutant background.O.I.C.G.H.G.
88.499.968.2At5g58500835963LSH5 (LIGHT SENSITIVE HYPOCOTYLS 5)F:molecular_function unknown;P:biological_process unknown;C:unknown;PMO.I.C.G.H.G.
88.199.960.1At5g16490831510RIC4 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 4)encodes a member of a novel protein family that contains contain a CRIB (for Cdc42/Rac-interactive binding) motif required for their specific interaction with GTP-bound Rop1 (plant-specific Rho GTPase). It interacts with Rop1 and is involved in pollen tube growth and function, and exocytosis in the pollen tube tip. Protein most similar to RIC2 (family subgroup V). Gene is expressed in all tissues examined.Interacts with ROP2 during pavement cell morphogenesis and with ROP1 to promote apical F-actin assembly.O.I.C.G.H.G.
88.199.936.8At4g29230829044anac075 (Arabidopsis NAC domain containing protein 75)F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:unknown;PMOFBVO.I.C.G.H.G.
87.999.913.9At3g26010822198F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
87.499.949.4At2g03450814874PAP9 (PURPLE ACID PHOSPHATASE 9)F:protein serine/threonine phosphatase activity, acid phosphatase activity;P:biological_process unknown;C:endomembrane system;PBMOFAO.I.C.G.H.G.
87.299.952.7At5g14510831302armadillo/beta-catenin repeat family proteinF:binding;P:biological_process unknown;C:cellular_component unknown;PFOMO.I.C.G.H.G.
87.299.929.8At4g00220828084JLO (JAGGED LATERAL ORGANS)Encodes a protein containing a LOB domain that is expressed in embryos, flower primordium and lateral floral organ boundaries. Overexpression is correlated with activation of STM and KNAT1 and down regulation of PIN1 and reduced auxin transport levels. Ectopic expression in plants results in premature termination of the shoot apical meristem and small, lobed leaves.O.I.C.G.H.G.
86.899.954.4At5g26330832702plastocyanin-like domain-containing protein / mavicyanin, putativeF:electron carrier activity, copper ion binding;P:unknown;C:anchored to membrane;PFO.I.C.G.H.G.
86.699.9130.9At5g18850832003unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.



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