Microarray experiments to specifically-expressed genes

GSM ID GSM133963
Assay name Fukuda_1-8_6B_Rep2_ATH1
GSE experiment GSE5748: In vitro tracheary element transdifferentiation of Col-0 suspension cells.

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
947.4100.0230.2At1g24030839015protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MPOBFVAO.I.C.G.H.G.
936.9100.0225.5At1g70500843386polygalacturonase, putative / pectinase, putativeF:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMAO.I.C.G.H.G.
636.6100.0120.4At2g38320818412unknown proteinF:unknown;P:biological_process unknown;C:endomembrane system;PMOO.I.C.G.H.G.
553.0100.090.0At1g10800837623unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
510.7100.0142.9At2g34790818044MEE23 (MATERNAL EFFECT EMBRYO ARREST 23)F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:embryonic development ending in seed dormancy, polar nucleus fusion;C:cell wall;BFPOAMO.I.C.G.H.G.
506.0100.0163.5At4g08160826365glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing proteinEncodes a putative glycosyl hydrolase family 10 protein (xylanase).O.I.C.G.H.G.
504.6100.0214.3At5g07080830599transferase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFOO.I.C.G.H.G.
479.4100.0139.1At5g59700836091protein kinase, putativeF:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVAO.I.C.G.H.G.
474.7100.078.4At1g71930843524VND7 (VASCULAR RELATED NAC-DOMAIN PROTEIN 7)Encodes a NAC-domain transcription factor with transcriptional activation activity that is involved in xylem formation. Induces transdifferentiation of various cells into protoxylem vessel elements. Located in the nucleus. Expression induced in the presence of auxin, cytokinin and brassinosteroids.O.I.C.G.H.G.
472.9100.0176.4At1g23460838954polygalacturonaseF:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMAO.I.C.G.H.G.
468.1100.0105.6At5g01930831699(1-4)-beta-mannan endohydrolase, putativeF:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFBOAO.I.C.G.H.G.
455.0100.0124.6At5g26330832702plastocyanin-like domain-containing protein / mavicyanin, putativeF:electron carrier activity, copper ion binding;P:unknown;C:anchored to membrane;PFO.I.C.G.H.G.
427.5100.0106.9At5g12870831127MYB46 (MYB DOMAIN PROTEIN 46)Member of the R2R3 factor gene family.O.I.C.G.H.G.
385.9100.0118.2At1g47410841146unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
366.2100.061.1At4g00220828084JLO (JAGGED LATERAL ORGANS)Encodes a protein containing a LOB domain that is expressed in embryos, flower primordium and lateral floral organ boundaries. Overexpression is correlated with activation of STM and KNAT1 and down regulation of PIN1 and reduced auxin transport levels. Ectopic expression in plants results in premature termination of the shoot apical meristem and small, lobed leaves.O.I.C.G.H.G.
356.3100.0170.8At1g68810843213basic helix-loop-helix (bHLH) family proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFOBO.I.C.G.H.G.
339.9100.098.4At1g75520843888SRS5 (SHI-RELATED SEQUENCE 5)A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis.O.I.C.G.H.G.
335.7100.0117.2At5g16490831510RIC4 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 4)encodes a member of a novel protein family that contains contain a CRIB (for Cdc42/Rac-interactive binding) motif required for their specific interaction with GTP-bound Rop1 (plant-specific Rho GTPase). It interacts with Rop1 and is involved in pollen tube growth and function, and exocytosis in the pollen tube tip. Protein most similar to RIC2 (family subgroup V). Gene is expressed in all tissues examined.Interacts with ROP2 during pavement cell morphogenesis and with ROP1 to promote apical F-actin assembly.O.I.C.G.H.G.
321.5100.053.3At1g62700842568ANAC026Encodes a NAC-domain transcription factor. Expressed in the vascular tissue.O.I.C.G.H.G.
320.0100.052.9At1g12260837780ANAC007 (ARABIDOPSIS NAC 007)Encodes a NAC-domain transcription factor. Expressed in the vascular tissue.O.I.C.G.H.G.
288.7100.055.3At5g11540831026FAD-binding domain-containing proteinF:D-arabinono-1,4-lactone oxidase activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system, membrane;BOFMPAO.I.C.G.H.G.
283.5100.042.6At2g46760819289FAD-binding domain-containing proteinF:oxidoreductase activity, D-arabinono-1,4-lactone oxidase activity, FAD binding, catalytic activity;P:unknown;C:membrane;BOFPMAO.I.C.G.H.G.
282.9100.094.2At2g04850815031auxin-responsive protein-relatedF:unknown;P:unknown;C:membrane;PMFOBO.I.C.G.H.G.
266.9100.0249.0At2g03200814849aspartyl protease family proteinF:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;PFMOO.I.C.G.H.G.
265.3100.0152.3At2g37090818285IRX9 (IRREGULAR XYLEM 9)The IRX9 gene encodes a putative family 43 glycosyl transferase. It was coordinately expressed with the cellulose synthase subunits during secondary cell wall formation. Cell wall analysis revealed a decrease in the abundance of xylan in the irx9 mutant, indicating that IRX9 is required for xylan synthesis. Mutants have irregular xylem phenotype suggesting a role in secondary cell wall biosynthesis.O.I.C.G.H.G.
258.5100.044.9At5g19870832108unknown proteinF:unknown;P:unknown;C:endomembrane system;MPO.I.C.G.H.G.
247.0100.0135.1At5g12400831115PHD finger transcription factor, putativeF:protein binding, DNA binding, zinc ion binding;P:regulation of transcription, DNA-dependent;C:nucleus;MPOFBO.I.C.G.H.G.
244.6100.058.3At1g31720840059unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
240.6100.0213.1At5g60020836124LAC17 (laccase 17)putative laccase, a member of laccase family of genes (17 members in Arabidopsis).O.I.C.G.H.G.
237.3100.073.4At3g47950823950AHA4mutant has Slight reduction in root and shoot growth; Exaggerated defects in salt stress; Plasma Membrane H+ ATPaseO.I.C.G.H.G.
236.5100.069.0At5g14470831298GHMP kinase-relatedF:kinase activity, phosphotransferase activity, alcohol group as acceptor, galactokinase activity, ATP binding;P:metabolic process, phosphorylation;C:cytoplasm;BOPAMO.I.C.G.H.G.
232.6100.086.0At5g14510831302armadillo/beta-catenin repeat family proteinF:binding;P:biological_process unknown;C:cellular_component unknown;PFOMO.I.C.G.H.G.
227.7100.035.6At5g56370835738F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
222.6100.0138.0At5g40020833999pathogenesis-related thaumatin family proteinF:molecular_function unknown;P:response to other organism;C:endomembrane system;PFMBOO.I.C.G.H.G.
218.6100.057.9At4g29230829044anac075 (Arabidopsis NAC domain containing protein 75)F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:unknown;PMOFBVO.I.C.G.H.G.
213.7100.0106.9At1g67420843062peptidaseF:peptidase activity;P:proteolysis;C:endomembrane system;MBFOPAO.I.C.G.H.G.
212.4100.042.0At1g63520842657unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
198.2100.0140.3At5g03260831887LAC11 (laccase 11)putative laccase, a member of laccase family of genes (17 members in Arabidopsis).O.I.C.G.H.G.
196.8100.0207.4At5g24380832509YSL2 (YELLOW STRIPE LIKE 2)closest Arabidopsis homolog of Zea maize metal-phytosiderophore/metal-nicotianamine transporter ZmYS1O.I.C.G.H.G.
195.7100.0201.9At5g18830832001SPL7 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 7)Encodes a member of the Squamosa Binding Protein family of transcriptional regulators. SPL7 is expressed highly in roots and appears to play a role in copper homeostasis. Mutants are hypersensitive to copper deficient conditions and display a retarded growth phenotype. SPL7 binds to the promoter of the copper responsive miRNAs miR398b and miR389c.O.I.C.G.H.G.
187.6100.0107.8At3g59480825117pfkB-type carbohydrate kinase family proteinF:kinase activity, ribokinase activity;P:D-ribose metabolic process, acetate fermentation, sucrose biosynthetic process, sucrose catabolic process, using beta-fructofuranosidase;C:cellular_component unknown;BOPAMFO.I.C.G.H.G.
186.5100.043.2At1g67370843058ASY1 (ASYNAPTIC 1)meiotic asynaptic mutant 1 (ASY1). ASY1 protein is initially distributed as numerous foci throughout the chromatin. During early G2, the foci are juxtaposed to the nascent chromosome axes to form a continuous axis associated signal.O.I.C.G.H.G.
181.7100.0101.7At5g58980836015ceramidase family proteinF:ceramidase activity;P:biological_process unknown;C:endomembrane system;MBFOPO.I.C.G.H.G.
179.1100.070.0At5g12350831110Ran GTPase binding / chromatin binding / zinc ion bindingF:chromatin binding, zinc ion binding, Ran GTPase binding;P:unknown;C:plasma membrane;MOBPFAVO.I.C.G.H.G.
177.5100.056.5At5g60720836193unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;POBMO.I.C.G.H.G.
172.5100.0216.9At3g21550821709unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
168.6100.0168.4At5g13300831171SFC (SCARFACE)Belongs to 15-member small GTPase gene family, ARF-GAP domain proteins (AGD); corresponds to AGD3, and is one of four proteins belonging to class 1, together with AGD1, AGD2 and AGD4. The protein contains four domains: BAR domain, PH domain, an ARF-GAP domain, and two Ankyrin repeats. In sfc mutants, the secondary and tertiary veins of cotyledons, leaves, sepals and petals are largely replaced by small segments of discontinuous veins. sfc mutants have exaggerated responses to auxin.O.I.C.G.H.G.
167.5100.076.0At1g17960838375threonyl-tRNA synthetase, putative / threonine--tRNA ligase, putativeF:nucleotide binding, aminoacyl-tRNA ligase activity, threonine-tRNA ligase activity, ATP binding;P:threonyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation;C:cytoplasm;BOMFAPO.I.C.G.H.G.
167.4100.051.4At1g69430843275unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
166.0100.0152.8At5g46340834677O-acetyltransferase-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFOO.I.C.G.H.G.
165.2100.095.9At1g14240837985nucleoside phosphatase family protein / GDA1/CD39 family proteinF:hydrolase activity;P:biological_process unknown;C:cellular_component unknown;MFPOBO.I.C.G.H.G.
163.899.956.7At5g38610833851invertase/pectin methylesterase inhibitor family proteinF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
163.799.937.2At5g08480830747VQ motif-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO.I.C.G.H.G.
163.499.993.8At5g01360830298-F:unknown;P:unknown;C:unknown;PMFO.I.C.G.H.G.
161.099.9106.3At1g49890841412unknown proteinF:unknown;P:unknown;C:chloroplast;OMFBPVAO.I.C.G.H.G.
159.699.929.4At1g76250843958unknown proteinF:unknown;P:biological_process unknown;C:endomembrane system;POMO.I.C.G.H.G.
158.499.981.9At1g48280841248hydroxyproline-rich glycoprotein family proteinF:unknown;P:biological_process unknown;C:unknown;MPOFBVAO.I.C.G.H.G.
156.599.9123.6At4g32880829424ATHB-8 (HOMEOBOX GENE 8)member of homeodomain-leucine zipper family, acting as a differentiation-promoting transcription factor of the vascular meristems.O.I.C.G.H.G.
154.899.9277.4At2g38080818386IRX12 (IRREGULAR XYLEM 12)Encodes a protein with similarity to putative laccase, a member of laccase family (17 members in Arabidopsis). Might be involved in cell wall biosynthesis. Mutants have a mild irregular xylem phenotype.O.I.C.G.H.G.
154.799.971.1At4g18550827587lipase class 3 family proteinF:triacylglycerol lipase activity;P:lipid metabolic process;C:cellular_component unknown;PFOBMVO.I.C.G.H.G.
154.599.952.0At1g54790841920GDSL-motif lipase/hydrolase family proteinF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOMO.I.C.G.H.G.
153.699.954.0At5g45020834533-F:unknown;P:unknown;C:cellular_component unknown;BOFPMAO.I.C.G.H.G.
151.399.954.9At1g58070842174unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPFBVAO.I.C.G.H.G.
150.399.9153.5At1g50120841434-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFOO.I.C.G.H.G.
143.499.933.4At3g04420819597anac048 (Arabidopsis NAC domain containing protein 48)F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;POO.I.C.G.H.G.
143.299.9137.1At5g15630831417IRX6Encodes a member of the COBRA family, similar to phytochelatin synthetase. Involved in secondary cell wall biosynthesis. Mutants make smaller plants with reduced levels of cellulose and cell wall sugars.O.I.C.G.H.G.
141.499.978.5At5g12260831101-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFBO.I.C.G.H.G.
141.199.998.6At3g48185823974unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
139.199.9296.0At1g63120842616ATRBL2 (Arabidopsis thaliana Rhomboid-like 2)AtRBL2 has been identified as a rhomboid protein involved in regulated intramembrane proteolysis (RIP). The enzyme has the proteolytic activity and substrate specificity comparable to the Drosophila Rho-1 protein.O.I.C.G.H.G.
138.099.9257.3At4g35350829688XCP1 (XYLEM CYSTEINE PEPTIDASE 1)tracheary element vacuolar proteinO.I.C.G.H.G.
134.599.9220.3At5g26270832696unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPO.I.C.G.H.G.
132.299.984.8At5g65970836727MLO10 (MILDEW RESISTANCE LOCUS O 10)A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO10 belongs to the clade III, with AtMLO5, AtMLO7, AtMLO8, and AtMLO9. The gene is expressed in root and cotyledon vascular system, in root-shoot junction and lateral root primordia and in developing siliques, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(sO.I.C.G.H.G.
130.399.947.1At1g43590840943transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
128.799.963.3At1g47230841126cyclin, putativeF:cyclin-dependent protein kinase regulator activity;P:regulation of cell cycle;C:nucleus;MPOFVO.I.C.G.H.G.
128.599.954.4At5g07800830673flavin-containing monooxygenase family protein / FMO family proteinF:NADP or NADPH binding, monooxygenase activity, FAD binding, flavin-containing monooxygenase activity;P:biological_process unknown;C:cellular_component unknown;BOMFPAO.I.C.G.H.G.
127.799.983.1At1g58370842206RXF12Encodes a protein with xylanase activity.O.I.C.G.H.G.
126.899.9180.5At5g17420831608IRX3 (IRREGULAR XYLEM 3)Encodes a xylem-specific cellulose synthase that is phosphorylated on one or more serine residues (on either S185 or one of S180 or S181).O.I.C.G.H.G.
123.399.9197.0At5g13330831174Rap2.6L (related to AP2 6L)encodes a member of the ERF (ethylene response factor) subfamily B-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily.O.I.C.G.H.G.
121.799.9120.3At5g18780831996F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.C.G.H.G.
120.999.965.7At5g06610830549unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO.I.C.G.H.G.
120.899.933.5At1g63300842636unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;MOBFPAVO.I.C.G.H.G.
120.399.939.1At5g06710830560HAT14 (HOMEOBOX FROM ARABIDOPSIS THALIANA)Homeobox-leucine zipper protein.O.I.C.G.H.G.
118.699.966.8At1g49980841422DNA-directed DNA polymerase/ damaged DNA bindingF:damaged DNA binding, DNA-directed DNA polymerase activity;P:DNA repair;C:membrane;BOMFAPO.I.C.G.H.G.
117.299.9164.5At5g19530832073ACL5 (ACAULIS 5)Encodes a spermine synthase. Required for internode elongation and vascular development, specifically in the mechanism that defines the boundaries between veins and nonvein regions. This mechanism may be mediated by polar auxin transport. Though ACL5 has been shown to function as a spermine synthase in E. coli, an ACL5 knockout has no effect on the endogenous levels of free and conjugated polyamines in Arabidopsis, suggesting that ACL5 may have a very specific or altogether different in vivo function.O.I.C.G.H.G.
114.299.987.2At1g50140841436ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide bindingF:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:biological_process unknown;C:cellular_component unknown;BOMFPAVO.I.C.G.H.G.
113.999.9113.5At1g19300838512PARVUS (PARVUS)The PARVUS/GLZ1 gene encodes a putative family 8 glycosyl transferase that contributes to xylan biosynthesis. Its gene expression shows good co-variance with the IRX3 gene involved in secondary cell wall synthesis. PARVUS/GLZ1 is predicted to have galacturonosyltransferase activity and may be involved in the formation of the complex oligosaccharide sequence present at the reducing end of xylan. PARVUS is expressed in cells undergoing secondary wall thickening, and parvus mutants have thinner cell walls.O.I.C.G.H.G.
113.899.949.2At3g26680822280SNM1 (SENSITIVE TO NITROGEN MUSTARD 1)involved in a SNM-dependent recombinational repair process of oxidatively induced DNA damage.O.I.C.G.H.G.
113.499.9154.0At5g18940832012Mo25 family proteinF:binding;P:biological_process unknown;C:cellular_component unknown;MFPOO.I.C.G.H.G.
113.299.937.4At5g08600830761U3 ribonucleoprotein (Utp) family proteinF:molecular_function unknown;P:rRNA processing;C:small-subunit processome;OMFBPVAO.I.C.G.H.G.
112.999.9224.1At1g26820839225RNS3 (RIBONUCLEASE 3)Encodes ribonuclease RNS3.O.I.C.G.H.G.
112.999.9106.1At1g67620843083-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOMPO.I.C.G.H.G.
111.599.939.9At2g37210818298-Encodes a protein of unknown function. It has been crystallized and shown to be structurally almost identical to the protein encoded by At5g11950.O.I.C.G.H.G.
111.099.955.7At2g03450814874PAP9 (PURPLE ACID PHOSPHATASE 9)F:protein serine/threonine phosphatase activity, acid phosphatase activity;P:biological_process unknown;C:endomembrane system;PBMOFAO.I.C.G.H.G.
109.899.957.4At1g67410843061exostosin family proteinF:catalytic activity;P:biological_process unknown;C:endomembrane system, membrane;PMOBFO.I.C.G.H.G.
108.599.9104.0At1g50240841446--O.I.C.G.H.G.
107.499.9276.4At5g59290836047UXS3 (UDP-GLUCURONIC ACID DECARBOXYLASE 3)Encodes an isoform of UDP-glucuronic acid decarboxylase, which is predicted to be cytosolic by PSORT. This enzyme produces UDP-xylose, which is a substrate for many cell wall carbohydrates including hemicellulose and pectin. UDP-xylose is also known to feedback regulate several cell wall biosynthetic enzymes.O.I.C.G.H.G.
106.999.9103.1At1g71940843525-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOMPFAO.I.C.G.H.G.
106.299.936.1At5g25290832601F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
105.399.954.4At2g04230814960F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO.I.C.G.H.G.
104.399.928.2At1g50150--O.I.C.G.H.G.



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