Microarray experiments to specifically-expressed genes

GSM ID GSM133959
Assay name Fukuda_1-4_2B_Rep2_ATH1
GSE experiment GSE5748: In vitro tracheary element transdifferentiation of Col-0 suspension cells.

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
678.2100.093.5At3g23060821880zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;MOPFBVO.I.C.G.H.G.
314.2100.0177.0At1g67620843083-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOMPO.I.C.G.H.G.
311.6100.0117.7At5g51500835224pectinesterase family proteinF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMOO.I.C.G.H.G.
267.0100.038.6At5g56370835738F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
258.5100.0182.5At1g69526843287UbiE/COQ5 methyltransferase family proteinF:methyltransferase activity;P:unknown;C:chloroplast;PBOO.I.C.G.H.G.
241.4100.0220.9At5g06720830561peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOMVO.I.C.G.H.G.
225.9100.052.8At5g08600830761U3 ribonucleoprotein (Utp) family proteinF:molecular_function unknown;P:rRNA processing;C:small-subunit processome;OMFBPVAO.I.C.G.H.G.
186.2100.0113.3At3g48185823974unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
171.5100.071.7At1g67410843061exostosin family proteinF:catalytic activity;P:biological_process unknown;C:endomembrane system, membrane;PMOBFO.I.C.G.H.G.
166.9100.072.1At1g47230841126cyclin, putativeF:cyclin-dependent protein kinase regulator activity;P:regulation of cell cycle;C:nucleus;MPOFVO.I.C.G.H.G.
157.899.934.8At1g77655844101unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
156.599.991.5At1g67420843062peptidaseF:peptidase activity;P:proteolysis;C:endomembrane system;MBFOPAO.I.C.G.H.G.
153.599.9110.2At1g72730843605eukaryotic translation initiation factor 4A, putative / eIF-4A, putativeF:helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding;P:biological_process unknown;C:cytosol, plasma membrane, plant-type cell wall;BOMFPAVO.I.C.G.H.G.
141.099.959.6At5g08360830734unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.C.G.H.G.
125.099.9108.3At1g75670843901DNA-directed RNA polymerase/ RNA bindingF:DNA-directed RNA polymerase activity, RNA binding;P:transcription;C:cellular_component unknown;POFO.I.C.G.H.G.
116.399.981.5At2g38090818387myb family transcription factorF:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;PMOFO.I.C.G.H.G.
114.299.957.1At1g75520843888SRS5 (SHI-RELATED SEQUENCE 5)A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis.O.I.C.G.H.G.
111.699.9128.2At4g25530828658FWAEncodes a homeodomain-containing transcription factor that controls flowering. FWA is silenced in wild type plants and reverse of the imprinted silencing causes a late flowering phenotype. FWA gene contains two tandem repeats around the transcription start site that are necessary and sufficient for silencing via DNA methylation.O.I.C.G.H.G.
110.399.962.2At1g31320840020LBD4 (LOB DOMAIN-CONTAINING PROTEIN 4)F:unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
108.099.995.0At5g26110832680ATP binding / catalytic/ protein kinaseF:protein kinase activity, catalytic activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;BOMAFPO.I.C.G.H.G.
106.599.915.3At3g26010822198F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
106.399.998.4At5g12290831104DGS1 (DGD1 SUPPRESSOR 1)Encodes a mitochondrial outer membrane protein, involved in galactoglycerolipid biosynthesis. The dgd1 mutant phenotype is suppressed in the dgs1 mutant background.O.I.C.G.H.G.
105.999.9133.5At5g13300831171SFC (SCARFACE)Belongs to 15-member small GTPase gene family, ARF-GAP domain proteins (AGD); corresponds to AGD3, and is one of four proteins belonging to class 1, together with AGD1, AGD2 and AGD4. The protein contains four domains: BAR domain, PH domain, an ARF-GAP domain, and two Ankyrin repeats. In sfc mutants, the secondary and tertiary veins of cotyledons, leaves, sepals and petals are largely replaced by small segments of discontinuous veins. sfc mutants have exaggerated responses to auxin.O.I.C.G.H.G.
104.799.941.9At3g26850822300-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOVO.I.C.G.H.G.
103.599.9128.9At5g24090832474acidic endochitinase (CHIB1)F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFBMOO.I.C.G.H.G.
102.699.9116.9At1g67320843052DNA primase, large subunit familyF:DNA primase activity;P:DNA replication, synthesis of RNA primer;C:alpha DNA polymerase:primase complex;MFOPAO.I.C.G.H.G.
100.699.939.8At1g69430843275unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
99.999.985.9At5g12400831115PHD finger transcription factor, putativeF:protein binding, DNA binding, zinc ion binding;P:regulation of transcription, DNA-dependent;C:nucleus;MPOFBO.I.C.G.H.G.
97.699.971.1At1g72790843610hydroxyproline-rich glycoprotein family proteinF:molecular_function unknown;P:biological_process unknown;C:cytosol, nucleus, plasma membrane;MPFOBVAO.I.C.G.H.G.
97.399.9187.3At5g26270832696unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPO.I.C.G.H.G.
96.699.9141.9At5g18830832001SPL7 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 7)Encodes a member of the Squamosa Binding Protein family of transcriptional regulators. SPL7 is expressed highly in roots and appears to play a role in copper homeostasis. Mutants are hypersensitive to copper deficient conditions and display a retarded growth phenotype. SPL7 binds to the promoter of the copper responsive miRNAs miR398b and miR389c.O.I.C.G.H.G.
96.399.931.9At5g11540831026FAD-binding domain-containing proteinF:D-arabinono-1,4-lactone oxidase activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system, membrane;BOFMPAO.I.C.G.H.G.
95.799.971.0At5g58500835963LSH5 (LIGHT SENSITIVE HYPOCOTYLS 5)F:molecular_function unknown;P:biological_process unknown;C:unknown;PMO.I.C.G.H.G.
93.099.933.5At5g25820832651exostosin family proteinF:catalytic activity;P:unknown;C:membrane;OMPBFVAO.I.C.G.H.G.
92.999.952.0At5g18770831995F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.C.G.H.G.
91.599.962.5At1g67600843081-F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BOPO.I.C.G.H.G.
91.499.971.3At1g14240837985nucleoside phosphatase family protein / GDA1/CD39 family proteinF:hydrolase activity;P:biological_process unknown;C:cellular_component unknown;MFPOBO.I.C.G.H.G.
90.399.953.4At3g55890824755yippee family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPOO.I.C.G.H.G.
90.299.956.8At5g08565830757positive transcription elongation factor/ zinc ion bindingF:positive transcription elongation factor activity, zinc ion binding;P:positive regulation of transcription;C:nucleus;MFOPO.I.C.G.H.G.
89.699.982.7At1g72740843606DNA-binding family protein / histone H1/H5 family proteinF:transcription factor activity;P:nucleosome assembly, regulation of transcription;C:nucleus;PMFOO.I.C.G.H.G.
88.999.926.1At1g50150--O.I.C.G.H.G.
88.799.9161.0At1g69250843256nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing proteinF:RNA binding, nucleotide binding, nucleic acid binding;P:transport, nucleocytoplasmic transport;C:intracellular;MPFOBO.I.C.G.H.G.
87.299.958.0At2g38340818414AP2 domain-containing transcription factor, putative (DRE2B)encodes a member of the DREB subfamily A-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are eight members in this subfamily including DREB2A AND DREB2B that are involved in response to drought.O.I.C.G.H.G.
86.799.978.3At2g03220814851FT1 (FUCOSYLTRANSFERASE 1)member of Glycosyltransferase Family- 37O.I.C.G.H.G.
85.799.929.8At5g07060830597zinc finger (CCCH-type) family proteinF:RNA binding, zinc ion binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;FMOPVO.I.C.G.H.G.
85.599.9110.4At5g11230830993organic anion transmembrane transporterF:organic anion transmembrane transporter activity;P:unknown;C:endomembrane system;PMFOBAO.I.C.G.H.G.
83.899.955.6At5g13310831172unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;MOBFPO.I.C.G.H.G.
83.399.954.2At1g30650839945WRKY14member of WRKY Transcription Factor; Group II-eO.I.C.G.H.G.
82.199.973.9At1g50140841436ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide bindingF:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:biological_process unknown;C:cellular_component unknown;BOMFPAVO.I.C.G.H.G.
79.799.916.5At1g49920841415zinc finger protein-relatedF:zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MOFPBVAO.I.C.G.H.G.
78.899.943.4At2g34080817969cysteine proteinase, putativeF:cysteine-type peptidase activity, cysteine-type endopeptidase activity;P:proteolysis;C:endomembrane system;MOPVBAFO.I.C.G.H.G.
78.799.9147.7At5g08500830749transmembrane CLPTM1 family proteinF:unknown;P:biological_process unknown;C:unknown;MOFPO.I.C.G.H.G.
77.499.950.3At4g19460827687glycosyl transferase family 1 proteinF:transferase activity, transferring glycosyl groups;P:biosynthetic process;C:cellular_component unknown;BOAPMFO.I.C.G.H.G.
74.299.9183.5At5g14730831325unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO.I.C.G.H.G.
73.199.987.3At5g59710836092VIP2 (VIRE2 INTERACTING PROTEIN2)Encodes a nuclear-localized NOT (negative on TATA-less) domain-containing protein that interacts with the Agrobacterium VirE2 protein and is required for Agrobacterium-mediated plant transformation. It likely facilitates T-DNA integration into plant chromosomes and may play a role as a transcriptional regulator.O.I.C.G.H.G.
72.699.9132.2At1g75510843887transcription initiation factor IIF beta subunit (TFIIF-beta) family proteinF:RNA polymerase II transcription factor activity, general RNA polymerase II transcription factor activity, catalytic activity, ATP binding, ATP-dependent helicase activity;P:transcription initiation from RNA polymerase II promoter, transcription from RNA polymerase II promoter;C:transcription factor TFIIF complex, mitochondrion;MFPOO.I.C.G.H.G.
72.699.926.7At3g20710821619F-box protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
72.099.939.1At3g26680822280SNM1 (SENSITIVE TO NITROGEN MUSTARD 1)involved in a SNM-dependent recombinational repair process of oxidatively induced DNA damage.O.I.C.G.H.G.
71.299.971.3At2g38180818396GDSL-motif lipase/hydrolase family proteinF:hydrolase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:unknown;BFPMOO.I.C.G.H.G.
70.899.970.1At5g11890831062-F:molecular_function unknown;P:unknown;C:plasma membrane;POO.I.C.G.H.G.
69.399.9210.4At2g03820814908nonsense-mediated mRNA decay NMD3 family proteinF:molecular_function unknown;P:nuclear-transcribed mRNA catabolic process, nonsense-mediated decay;C:cellular_component unknown;MFOPAO.I.C.G.H.G.
69.399.954.9At5g12260831101-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFBO.I.C.G.H.G.
69.199.9220.9At1g72750843607ATTIM23-2F:protein transporter activity, P-P-bond-hydrolysis-driven protein transmembrane transporter activity;P:intracellular protein transport, protein transport;C:mitochondrion, mitochondrial inner membrane, mitochondrial inner membrane presequence translocase complex, membrane;MFPOO.I.C.G.H.G.
68.699.915.4At1g75600843895histone H3.2, putativeF:DNA binding;P:nucleosome assembly;C:nucleus, nucleosome;MFPOO.I.C.G.H.G.
67.999.988.1At2g03430814872ankyrin repeat family proteinF:protein binding;P:biological_process unknown;C:cell wall;MOFBPVAO.I.C.G.H.G.
65.499.851.7At5g12330831108LRP1 (LATERAL ROOT PRIMORDIUM 1)A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis. Expressed in lateral root primordia and induced by auxin. SWP1 is involved in the repression of LRP1 via histone deacetylation.O.I.C.G.H.G.
64.699.8107.7At3g24240822011leucine-rich repeat transmembrane protein kinase, putativeF:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVAO.I.C.G.H.G.
63.699.857.6At3g47060823859ftsh7 (FtsH protease 7)encodes an FtsH protease that is localized to the chloroplastO.I.C.G.H.G.
62.499.864.2At4g18610827595LSH9 (LIGHT SENSITIVE HYPOCOTYLS 9)F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PMO.I.C.G.H.G.
62.299.8121.2At5g11900831063eukaryotic translation initiation factor SUI1 family proteinF:translation initiation factor activity;P:translational initiation;C:cellular_component unknown;MFOPO.I.C.G.H.G.
62.099.882.6At1g49950841418DNA-binding protein, putativeEncodes a telomeric DNA binding protein. In vitro, an N-terminal Myb domain enables it to interact with double-stranded telomeric repeats.O.I.C.G.H.G.
61.999.852.4At5g24280832495-F:unknown;P:unknown;C:unknown;PMOBFO.I.C.G.H.G.
61.099.827.4At5g25290832601F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
60.999.816.1At2g47860819398phototropic-responsive NPH3 family proteinF:protein binding, signal transducer activity;P:response to light stimulus;C:plasma membrane;PO.I.C.G.H.G.
59.999.822.7At5g18820832000EMB3007 (embryo defective 3007)F:protein binding, ATP binding;P:embryonic development ending in seed dormancy;C:chloroplast;BOMFPAVO.I.C.G.H.G.
59.899.897.2At5g08535830753D111/G-patch domain-containing proteinF:nucleic acid binding;P:biological_process unknown;C:intracellular, chloroplast;MPFOO.I.C.G.H.G.
59.799.831.9At5g44500834477small nuclear ribonucleoprotein associated protein B, putative / snRNP-B, putative / Sm protein B, putativeF:molecular_function unknown;P:unknown;C:nucleolus, small nucleolar ribonucleoprotein complex, nucleus;MPFBOVAO.I.C.G.H.G.
59.399.825.7At1g50700841492CPK33member of Calcium Dependent Protein KinaseO.I.C.G.H.G.
58.399.875.8At1g141308379722-oxoglutarate-dependent dioxygenase, putativeF:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity;P:biological_process unknown;C:nucleus;POBFMO.I.C.G.H.G.
58.099.895.3At1g50120841434-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFOO.I.C.G.H.G.
57.099.8146.6At5g12370831112SEC10 (EXOCYST COMPLEX COMPONENT SEC10)F:molecular_function unknown;P:exocytosis, vesicle docking;C:plasma membrane, membrane, exocyst;FMPOBO.I.C.G.H.G.
56.499.844.1At1g17960838375threonyl-tRNA synthetase, putative / threonine--tRNA ligase, putativeF:nucleotide binding, aminoacyl-tRNA ligase activity, threonine-tRNA ligase activity, ATP binding;P:threonyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation;C:cytoplasm;BOMFAPO.I.C.G.H.G.
56.299.829.5At1g50400841462porin family proteinF:voltage-gated anion channel activity;P:anion transport;C:mitochondrial outer membrane;MFOPO.I.C.G.H.G.
55.999.811.6At3g46800823833DC1 domain-containing proteinF:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;PMOFO.I.C.G.H.G.
55.699.857.4At5g08550830755ILP1 (increased level of polyploidy1-1D)Encodes a transcriptional repressor that is homologous to the C-terminal region of mammalian GC binding factor. It regulates endoreduplication through control of CYC2A expression.O.I.C.G.H.G.
55.099.876.9At5g11240830994transducin family protein / WD-40 repeat family proteinF:nucleotide binding;P:biological_process unknown;C:endomembrane system;BMFOPAO.I.C.G.H.G.
54.799.854.5At5g65970836727MLO10 (MILDEW RESISTANCE LOCUS O 10)A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO10 belongs to the clade III, with AtMLO5, AtMLO7, AtMLO8, and AtMLO9. The gene is expressed in root and cotyledon vascular system, in root-shoot junction and lateral root primordia and in developing siliques, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(sO.I.C.G.H.G.
54.499.873.7At1g50240841446--O.I.C.G.H.G.
53.999.851.7At1g67570843078unknown proteinF:unknown;P:unknown;C:nucleus;POO.I.C.G.H.G.
53.899.8111.5At5g17650831631glycine/proline-rich proteinF:unknown;P:unknown;C:unknown;MFPBOVAO.I.C.G.H.G.
53.799.848.5At1g32930840187galactosyltransferase family proteinF:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:protein amino acid glycosylation;C:membrane;MPOO.I.C.G.H.G.
53.399.835.6At3g01070821257plastocyanin-like domain-containing proteinF:electron carrier activity, copper ion binding;P:unknown;C:anchored to membrane;PO.I.C.G.H.G.
53.299.828.6At4g29230829044anac075 (Arabidopsis NAC domain containing protein 75)F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:unknown;PMOFBVO.I.C.G.H.G.
52.299.822.8At1g67370843058ASY1 (ASYNAPTIC 1)meiotic asynaptic mutant 1 (ASY1). ASY1 protein is initially distributed as numerous foci throughout the chromatin. During early G2, the foci are juxtaposed to the nascent chromosome axes to form a continuous axis associated signal.O.I.C.G.H.G.
51.299.843.9At1g49980841422DNA-directed DNA polymerase/ damaged DNA bindingF:damaged DNA binding, DNA-directed DNA polymerase activity;P:DNA repair;C:membrane;BOMFAPO.I.C.G.H.G.
50.599.8236.7At1g17180838289ATGSTU25 (GLUTATHIONE S-TRANSFERASE TAU 25)Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).O.I.C.G.H.G.
50.599.852.9At1g71140843454MATE efflux family proteinF:drug transporter activity, antiporter activity, transporter activity;P:multidrug transport;C:plasma membrane, membrane;BOPFMAO.I.C.G.H.G.
49.599.8118.5At2g37570818333SLT1 (sodium- and lithium-tolerant 1)encodes a protein that can complement the salt-sensitive phenotype of a calcineurin (CaN)-deficient yeast mutant. This gene occurs in a single-copy and is 75% identical to tobacco SLT1 gene.O.I.C.G.H.G.
49.599.842.9At5g18750831993DNAJ heat shock N-terminal domain-containing proteinF:unfolded protein binding, heat shock protein binding;P:protein folding;C:cellular_component unknown;BOMPFAVO.I.C.G.H.G.
49.499.820.7At5g63750836495IBR domain-containing proteinF:protein binding, zinc ion binding;P:unknown;C:intracellular;MPOFO.I.C.G.H.G.



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