Microarray experiments to specifically-expressed genes

GSM ID GSM133950
Assay name Murray_2-6_T10-APH_Rep1_ATH1
GSE experiment GSE5747: Genome-wide cell cycle studies

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
313.5100.0112.5At1g59660842256nucleoporin family proteinF:transporter activity;P:transport;C:chloroplast, nuclear pore;MBOFPVAO.I.C.G.H.G.
312.8100.091.2At4g01970828186AtSTS (Arabidopsis thaliana stachyose synthase)Encodes a putative stachyose synthetase.O.I.C.G.H.G.
223.7100.082.2At5g61740836296ATATH14member of ATH subfamilyO.I.C.G.H.G.
184.2100.084.9At1g36180840522ACC2 (ACETYL-COA CARBOXYLASE 2)acetyl-CoA carboxylase 2 (ACC2)O.I.C.G.H.G.
179.7100.0104.1At1g51380841562eukaryotic translation initiation factor 4A, putative / eIF-4A, putativeF:helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding;P:unknown;C:cellular_component unknown;BOMFPAVO.I.C.G.H.G.
177.3100.038.9At1g445103767344transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
176.0100.080.9At4g21070827854ATBRCA1Encodes AtBRCA1, an ortholog of the human breast cancer susceptibility gene 1. Contains one N-terminal RING finger, two C-terminal BRCT and the p300/CBP interacting domain. Strongly induced by gamma rays, consistent with a putative role in DNA repair and in cell cycle control.O.I.C.G.H.G.
172.1100.041.3At4g01930828198DC1 domain-containing proteinF:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;PMOO.I.C.G.H.G.
164.9100.019.4At4g25330828636unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
163.099.935.7At4g01920828197DC1 domain-containing proteinF:unknown;P:intracellular signaling cascade;C:cellular_component unknown;PMOO.I.C.G.H.G.
162.799.9114.7At4g02390828049APP (ARABIDOPSIS POLY(ADP-RIBOSE) POLYMERASE)Encodes a DNA dependent nuclear poly (ADP-ribose) polymerase (E.C.2.4.2.30), thought to be involved in post-translational modification .O.I.C.G.H.G.
157.599.951.3At3g42725823305unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
157.099.959.3At5g20850832208ATRAD51Encodes a homolog of yeast RAD51. Its mRNA is most abundant in early flower buds and is expressed at high levels in exponentially growing cells in suspension cultures and is induced in response to gamma radiation.O.I.C.G.H.G.
151.399.962.9At5g43980834421PDLP1 (PLASMODESMATA-LOCATED PROTEIN 1)Encodes a plasmodesmal protein that affects the intercellular movement of molecules through the plasmodesmata. The cytoplasmic C-terminal portion of the protein is connected to the apoplastic N-terminal portion of the protein by a single transmembrane domain (TMD). It is transported to the plasmodesmata through the secretory pathway. PDLP1 has two DUF26 domains and a signal peptide, but the proper localization of the protein appears to depend on the TMD.O.I.C.G.H.G.
150.799.9161.6At1g33940840291-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOO.I.C.G.H.G.
139.699.9319.4At2g01610814690invertase/pectin methylesterase inhibitor family proteinF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
132.399.954.9At3g19350821469MPC (MATERNALLY EXPRESSED PAB C-TERMINAL)Encodes a the C-terminal domain of poly(A) binding proteins. MPC is imprinted such that only the maternal allele is expressed in the endosperm. MPC is silenced by the action of MET1 and its expression is promoted by DEM.O.I.C.G.H.G.
131.599.939.6At5g64060836527anac103 (Arabidopsis NAC domain containing protein 103)F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;PO.I.C.G.H.G.
128.899.934.6At4g34320829582unknown proteinF:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;PBOMO.I.C.G.H.G.
127.099.940.3At3g61340825306F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.C.G.H.G.
123.299.9148.4At1g69770843313CMT3 (chromomethylase 3)Encodes a chromomethylase involved in methylating cytosine residues at non-CG sites. Involved in preferentially methylating transposon-related sequences, reducing their mobility. CMT3 interacts with an Arabidopsis homologue of HP1 (heterochromatin protein 1), which in turn interacts with methylated histones. Involved in gene silencing.O.I.C.G.H.G.
122.799.983.0At4g37490829904CYCB1Cyclin-dependent protein kinase CYCB1;1. Functions as an effector of growth control at G2/M. Regulated by TCP20.O.I.C.G.H.G.
121.299.926.4At3g61090825281unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
117.499.9306.3At3g303963769077transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
108.499.979.5At4g22960828395unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPBO.I.C.G.H.G.
102.199.9277.7At2g122403768292transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
100.399.961.1At1g20350838623ATTIM17-1mitochondrial inner membrane translocaseO.I.C.G.H.G.
99.599.995.4At5g13840831230FZR3 (FIZZY-RELATED 3)F:signal transducer activity;P:signal transduction;C:chloroplast, heterotrimeric G-protein complex;MFBOPAO.I.C.G.H.G.
99.499.995.6At1g60030842297xanthine/uracil permease family proteinF:transmembrane transporter activity;P:transport;C:plasma membrane, membrane;BOMPFAVO.I.C.G.H.G.
99.299.929.6At3g48770824038ATP binding / DNA bindingF:DNA binding, ATP binding;P:biological_process unknown;C:chloroplast;PMBOFAO.I.C.G.H.G.
99.199.913.0At3g172603768760transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
97.699.957.3At4g00930827980CIP4.1Encodes COP1-interacting protein CIP4.1.O.I.C.G.H.G.
94.499.987.0At5g47950834846transferase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFOO.I.C.G.H.G.
91.999.9261.7At2g106403767859transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
90.599.9240.9At2g123003768253transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
90.299.951.7At4g01860827918transducin family protein / WD-40 repeat family proteinF:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;MBFOPAO.I.C.G.H.G.
87.299.939.5At5g61690836291ATATH15member of ATH subfamilyO.I.C.G.H.G.
85.399.991.1At5g48720834930XRI1 (X-RAY INDUCED TRANSCRIPT 1)Encodes XRI1 (X-ray induced 1). Required for post-meiotic stages of pollen development and male and female meiosis. Maybe required for meiotic DNA repair. Inducible by X-ray. Homozygous xri1 mutants are sterile due to extensive chromosome fragmentation.O.I.C.G.H.G.
85.199.963.4At2g15790816074SQN (SQUINT)SQN encodes the Arabidopsis homolog of cyclophilin 40 (CyP40). It is specifically required for the vegetative but not the reproductive maturation of the shoot.O.I.C.G.H.G.
84.399.915.2At5g03360831864DC1 domain-containing proteinF:unknown;P:unknown;C:cellular_component unknown;PBOVMAO.I.C.G.H.G.
82.599.9245.7At3g07800819971thymidine kinase, putativeF:thymidine kinase activity, ATP binding;P:pyrimidine deoxyribonucleoside interconversion, anaerobic respiration;C:cellular_component unknown;BOVMPAFO.I.C.G.H.G.
82.499.9164.6At3g27400822361pectate lyase family proteinF:pectate lyase activity;P:biological_process unknown;C:endomembrane system;BPFOO.I.C.G.H.G.
81.599.973.1At3g11520820325CYCB1Encodes a B-type mitotic cyclin.O.I.C.G.H.G.
78.599.927.5At5g03780831726TRFL10 (TRF-LIKE 10)Encodes a protein whose sequence is similar to human telomere proteins. This belongs to TRFL family 2, which do not show DNA binding in vitro.O.I.C.G.H.G.
77.599.9168.1At2g04000814926transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
75.599.939.8At1g23790838990unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFBOO.I.C.G.H.G.
73.399.936.0At2g07140815283-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
71.599.940.0At5g02220831792unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
70.499.968.7At1g44130841016nucellin protein, putativeF:aspartic-type endopeptidase activity;P:proteolysis;C:plant-type cell wall;POMFO.I.C.G.H.G.
68.099.933.7At2g06510815209RPA1A (REPLICATION PROTEIN A 1A)Encodes a homolog of Replication Protein A that is involved in meiosis I in pollen mother cells. rpa1a mutants have a reduced number of class I crossovers. The protein is located in chromatin-associated foci in early leptotene and can be detected in these foci until late pachytene of meiosis I.O.I.C.G.H.G.
67.799.927.4At4g19130827651DNA binding / nucleic acid binding / zinc ion bindingF:DNA binding, zinc ion binding, nucleic acid binding;P:DNA replication;C:nucleus;MPOFAO.I.C.G.H.G.
67.299.8112.4At2g20800816609NDB4 (NAD(P)H dehydrogenase B4)F:NADH dehydrogenase activity;P:unknown;C:extrinsic to mitochondrial inner membrane, mitochondrion, plastid;BOFPAMO.I.C.G.H.G.
66.899.870.1At2g01640814693unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFO.I.C.G.H.G.
66.599.827.2At1g34355840337forkhead-associated domain-containing protein / FHA domain-containing proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;MBOFPAVO.I.C.G.H.G.
65.999.893.7At1g68360843165zinc finger protein-relatedF:transcription factor activity;P:regulation of transcription;C:intracellular;PMOO.I.C.G.H.G.
63.699.8103.9At2g02860814817SUT2 (SUCROSE TRANSPORTER 2)encodes a sucrose transporter in sieve elements and a number of sink tissues and cell types. Gene expression is induced by wounding.O.I.C.G.H.G.
63.099.8105.2At1g23410838949ubiquitin extension protein, putative / 40S ribosomal protein S27A (RPS27aA)F:protein binding, structural constituent of ribosome;P:protein ubiquitination during ubiquitin-dependent protein catabolic process, protein modification process, translation;C:cytosolic small ribosomal subunit, plasma membrane;MPOFVABO.I.C.G.H.G.
62.999.843.9At1g334603766895transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
62.899.859.2At2g47680819381zinc finger (CCCH type) helicase family proteinF:helicase activity, zinc ion binding, nucleic acid binding, ATP binding;P:nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;C:chloroplast;MBOFPVO.I.C.G.H.G.
62.099.812.8At2g43270818929F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.C.G.H.G.
61.699.8137.3At1g71380843479ATCEL3 (ARABIDOPSIS THALIANA CELLULASE 3)F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:cell wall, plasma membrane, plant-type cell wall;PBMOFO.I.C.G.H.G.
61.199.8120.3At5g42970834312COP8 (CONSTITUTIVE PHOTOMORPHOGENIC 8)encodes subunit 4 of COP9 signalosome complex. sequence is similar to a subunit of the 19S regulatory particle of the 26S proteasome. recessive mutation causes derepression of photomorphogenesis.O.I.C.G.H.G.
60.499.8147.3At2g02560814786CAND1 (CULLIN-ASSOCIATED AND NEDDYLATION DISSOCIATED)Arabidopsis thaliana homolog of human CAND1 (cullin-associated and neddylation-dissociated). Putative similarity to TBP-interacting protein TIP120. Ubiquitously expressed in plant tissues throughout development. T-DNA insertion mutant plants were completely sterile and resistant to sirtinol and auxin, but not to gibberellins or brassinolide. Displayed developmental phenotypes similar to those of axr1, namely, short petioles, downwardly curling leaves, shorter inflorescence. Required for SCF function and appears to modulate SCF complex cycling. Physically interacts with CUL1.O.I.C.G.H.G.
59.499.867.0At1g33450840238transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
58.499.899.2At2g15860816082unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBVO.I.C.G.H.G.
58.499.818.2At3g55700824736UDP-glucoronosyl/UDP-glucosyl transferase family proteinF:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBVOFO.I.C.G.H.G.
56.899.826.7At1g63540842659hydroxyproline-rich glycoprotein family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOBPVAO.I.C.G.H.G.
56.499.859.1At5g51480835222SKS2 (SKU5 SIMILAR 2)F:oxidoreductase activity, copper ion binding;P:unknown;C:anchored to plasma membrane, plasma membrane, anchored to membrane;FBPMOAO.I.C.G.H.G.
56.499.851.9At5g53830835464VQ motif-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFBMO.I.C.G.H.G.
56.499.841.6At3g16980820954NRPB9AOne of two highly similar, non-catalytic subunits common to nuclear DNA-directed RNA polymerases II, IV and V; homologous to budding yeast RPB9. Appears to be redundant with At4g16265O.I.C.G.H.G.
56.199.845.4At1g79610844299sodium proton exchanger, putative (NHX6)F:solute:hydrogen antiporter activity, sodium:hydrogen antiporter activity;P:cation transport, sodium ion transport, regulation of pH;C:integral to membrane;BMOPFAO.I.C.G.H.G.
55.699.835.7At4g29770829099-Target of trans acting-siR480/255.O.I.C.G.H.G.
55.499.8267.1At2g44450819052BGLU15 (BETA GLUCOSIDASE 15)F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:cell wall, plant-type cell wall;BOPMFAO.I.C.G.H.G.
54.899.856.4At1g23550838965SRO2 (SIMILAR TO RCD ONE 2)Encodes a protein with similarity to RCD1 but without the WWE domain. The protein does have a PARP signature upstream of the C-terminal protein interaction domain. The PARP signature may bind NAD+ and attach the ADP-ribose-moiety from NAD+ to the target molecule. Its presence suggests a role for the protein in ADP ribosylation.O.I.C.G.H.G.
54.099.849.0At5g24280832495-F:unknown;P:unknown;C:unknown;PMOBFO.I.C.G.H.G.
53.999.8118.3At3g16810820934APUM24 (Arabidopsis Pumilio 24)F:RNA binding, binding;P:unknown;C:nucleolus;MFPOBO.I.C.G.H.G.
53.399.8134.1At1g19850838573MP (MONOPTEROS)Encodes a transcription factor (IAA24) mediating embryo axis formation and vascular development. Similar to AUXIN RESPONSIVE FACTOR 1 (ARF1) shown to bind to auxin responsive elements (AREs), and to the maize transcriptional activator VIVIPAROUS 1( VP1). In situ hybridization shows expression in provascular tissue of embryos, the emerging shoot primordia, then is restricted to provascular tissue, and in the root central vascular cylinder.O.I.C.G.H.G.
53.399.810.4At5g49110834970unknown proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;BMOFPVO.I.C.G.H.G.
53.099.827.6At5g40840834084SYN2Cohesion family protein SYN2 (SYN2).O.I.C.G.H.G.
52.899.8146.6At5g43330834351malate dehydrogenase, cytosolic, putativeF:in 6 functions;P:cellular carbohydrate metabolic process, glycolysis, malate metabolic process, carbohydrate metabolic process, metabolic process;C:plasma membrane;BOMPFAO.I.C.G.H.G.
52.899.822.0At2g02820814812MYB88 (myb domain protein 88)Encodes a putative transcription factor (MYB88), involved in stomata development, double loss of MYB88 and FLP (MYB124) activity results in a failure of guard mother cells (GMCs) to adopt the guard cell fate, thus they continue to divide resulting in abnormal stomata consisting of clusters of numerous guard cell-like cells. This phenotype is enhanced in double mutants over the single mutant flp phenotype.O.I.C.G.H.G.
52.699.8135.9At2g15690816062pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFBVAO.I.C.G.H.G.
52.499.844.1At4g01880828223methyltransferaseF:methyltransferase activity;P:tRNA processing;C:unknown;MOFPABO.I.C.G.H.G.
52.199.858.3At2g46180819225GC4 (golgin candidate 4)This gene is predicted to encode a protein that functions as a Golgi apparatus structural component known as a golgin in mammals and yeast. A fluorescently-tagged version of GC4 co-localizes with Golgi markers, and this localization appears to be replicated using the C-terminal (169 aa) portion of the protein.O.I.C.G.H.G.
51.599.822.8At2g38160818394unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;FMBOPVO.I.C.G.H.G.
51.499.854.7At1g51580841583KH domain-containing proteinF:RNA binding, nucleic acid binding;P:unknown;C:unknown;MPFOBVAO.I.C.G.H.G.
50.599.827.0At2g02020814733proton-dependent oligopeptide transport (POT) family proteinF:transporter activity;P:oligopeptide transport;C:membrane;BPMOFO.I.C.G.H.G.
49.699.830.1At5g50890835161-F:unknown;P:unknown;C:cellular_component unknown;PO.I.C.G.H.G.
49.499.826.8At1g59540842245ZCF125Encodes a kinesin-like protein.O.I.C.G.H.G.
48.899.834.1At4g01910827105DC1 domain-containing proteinF:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;PMOO.I.C.G.H.G.
48.699.835.0At1g20370838625tRNA pseudouridine synthase family proteinF:pseudouridine synthase activity;P:tRNA processing, pseudouridine synthesis;C:cellular_component unknown;BOMFAPO.I.C.G.H.G.
48.599.859.3At5g15540831407EMB2773 (EMBRYO DEFECTIVE 2773)Encodes Adherin SCC2. Essential for viability. Required for normal seed development. Plays a role in the establishment of sister-chromatid cohesion and chromosome organization during meiosis.O.I.C.G.H.G.
48.499.824.8At2g15630816056pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBAO.I.C.G.H.G.
47.899.880.9At2g03800814906GEK1 (GEKO1)encodes a D-aminoacyl-tRNA deacylase. Involved in detoxification of D-aminoacyl-tRNA. Mutants also show ethanol-hypersensitive phenotype.O.I.C.G.H.G.
47.799.894.7At1g33410840234SAR1 (suppressor of auxin resistance1)F:unknown;P:response to auxin stimulus, mRNA export from nucleus, developmental process;C:nuclear membrane;MPFOO.I.C.G.H.G.
47.599.834.9At5g25800832649exonuclease family proteinF:exonuclease activity, nucleic acid binding;P:unknown;C:intracellular;MFOPBVO.I.C.G.H.G.
47.399.824.1At5g15380831390DRM1 (domains rearranged methylase 1)Encodes methyltransferase involved in the de novo DNA methylation and maintenance of asymmetric methylation of DNA sequences.O.I.C.G.H.G.
47.099.890.9At1g3624084053060S ribosomal protein L30 (RPL30A)F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit;MOAFPBO.I.C.G.H.G.
46.999.8118.2At5g14250831275COP13 (CONSTITUTIVE PHOTOMORPHOGENIC 13)Encodes subunit 3 of the COP9 signalosome.O.I.C.G.H.G.
46.799.824.1At2g01740814704pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBAO.I.C.G.H.G.



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