CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM133945

Assay name Murray_2-1_T0-APH_Rep1_ATH1

GSE experiment GSE5747: Genome-wide cell cycle studies

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
711.2 100.0 162.6 At4g21070 827854 ATBRCA1 Encodes AtBRCA1, an ortholog of the human breast cancer susceptibility gene 1. Contains one N-terminal RING finger, two C-terminal BRCT and the p300/CBP interacting domain. Strongly induced by gamma rays, consistent with a putative role in DNA repair and in cell cycle control. O.I. C.G. H.G.
383.7 100.0 124.4 At1g59660 842256 nucleoporin family protein F:transporter activity;P:transport;C:chloroplast, nuclear pore;MBOFPVA O.I. C.G. H.G.
380.7 100.0 46.7 At3g61090 825281 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
341.0 100.0 24.2 At3g17260 3768760 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
337.0 100.0 100.9 At5g61740 836296 ATATH14 member of ATH subfamily O.I. C.G. H.G.
310.0 100.0 90.8 At4g01970 828186 AtSTS (Arabidopsis thaliana stachyose synthase) Encodes a putative stachyose synthetase. O.I. C.G. H.G.
266.2 100.0 74.1 At3g17110 3768803 - F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
260.6 100.0 132.3 At1g44130 841016 nucellin protein, putative F:aspartic-type endopeptidase activity;P:proteolysis;C:plant-type cell wall;POMF O.I. C.G. H.G.
258.1 100.0 76.1 At5g20850 832208 ATRAD51 Encodes a homolog of yeast RAD51. Its mRNA is most abundant in early flower buds and is expressed at high levels in exponentially growing cells in suspension cultures and is induced in response to gamma radiation. O.I. C.G. H.G.
236.7 100.0 23.3 At4g25330 828636 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
228.8 100.0 94.6 At1g36180 840522 ACC2 (ACETYL-COA CARBOXYLASE 2) acetyl-CoA carboxylase 2 (ACC2) O.I. C.G. H.G.
207.3 100.0 128.9 At5g47950 834846 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFO O.I. C.G. H.G.
206.1 100.0 129.0 At4g02390 828049 APP (ARABIDOPSIS POLY(ADP-RIBOSE) POLYMERASE) Encodes a DNA dependent nuclear poly (ADP-ribose) polymerase (E.C.2.4.2.30), thought to be involved in post-translational modification . O.I. C.G. H.G.
206.0 100.0 274.1 At2g04000 814926 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
201.3 100.0 43.2 At4g34320 829582 unknown protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;PBOM O.I. C.G. H.G.
199.7 100.0 195.3 At3g48100 823965 ARR5 (ARABIDOPSIS RESPONSE REGULATOR 5) Encodes a transcription repressor that mediates a negative feedback loop in cytokinin signalling. ARR5 expression is upregulated by Class I KNOX genes. Arr5 protein is stabilized by cytokinin in a two-component phosphorelay. O.I. C.G. H.G.
191.2 100.0 132.6 At1g60030 842297 xanthine/uracil permease family protein F:transmembrane transporter activity;P:transport;C:plasma membrane, membrane;BOMPFAV O.I. C.G. H.G.
187.7 100.0 54.3 At1g08260 837346 TIL1 (TILTED 1) Similar to POL2A, DNA polymerase epsilon catalytic subunit. Essential for Arabidopsis growth. Null homozygotes are embryo lethal, partial loss of function alleles show embryo patterning defects such as root pole displacement. Delayed progression through cell cycle results in embryos with smaller numbers of larger cells. O.I. C.G. H.G.
186.5 100.0 38.2 At3g29610 822626 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
178.8 100.0 102.1 At4g22960 828395 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPB O.I. C.G. H.G.
171.6 100.0 123.0 At2g02230 814754 AtPP2-B1 (Phloem protein 2-B1) F:carbohydrate binding;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
164.5 100.0 60.7 At5g02220 831792 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
160.2 99.9 71.1 At4g30430 829166 TET9 (TETRASPANIN9) Member of TETRASPANIN family O.I. C.G. H.G.
154.3 99.9 93.1 At4g37490 829904 CYCB1 Cyclin-dependent protein kinase CYCB1;1. Functions as an effector of growth control at G2/M. Regulated by TCP20. O.I. C.G. H.G.
154.0 99.9 122.4 At5g48720 834930 XRI1 (X-RAY INDUCED TRANSCRIPT 1) Encodes XRI1 (X-ray induced 1). Required for post-meiotic stages of pollen development and male and female meiosis. Maybe required for meiotic DNA repair. Inducible by X-ray. Homozygous xri1 mutants are sterile due to extensive chromosome fragmentation. O.I. C.G. H.G.
153.9 99.9 58.8 At4g01270 828038 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;MOPFBAV O.I. C.G. H.G.
150.7 99.9 331.8 At2g01610 814690 invertase/pectin methylesterase inhibitor family protein F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
147.0 99.9 38.2 At4g01930 828198 DC1 domain-containing protein F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;PMO O.I. C.G. H.G.
142.9 99.9 99.8 At3g28150 822439 unknown protein F:unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
142.0 99.9 41.3 At4g29170 829038 ATMND1 A homolog of yeast, mouse and human mnd1delta protein. Null mutants exhibit normal vegetative and flower development; however, during prophase I, chromosomes become fragmented resulting in random distribution of the fragments between polyads. Both male and female meiosis are defective and strong accumulation of AtRAD51 was observed in the inflorescence nuclei of mutant plants. Similarly to its yeast and animal homologues, AtMnd1 might play a role in DSB repair during meiosis. O.I. C.G. H.G.
140.8 99.9 47.2 At4g39320 830087 microtubule-associated protein-related F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MOFBP O.I. C.G. H.G.
137.6 99.9 71.5 At1g20350 838623 ATTIM17-1 mitochondrial inner membrane translocase O.I. C.G. H.G.
137.0 99.9 47.9 At2g06510 815209 RPA1A (REPLICATION PROTEIN A 1A) Encodes a homolog of Replication Protein A that is involved in meiosis I in pollen mother cells. rpa1a mutants have a reduced number of class I crossovers. The protein is located in chromatin-associated foci in early leptotene and can be detected in these foci until late pachytene of meiosis I. O.I. C.G. H.G.
135.3 99.9 28.9 At1g20750 838665 helicase-related F:in 6 functions;P:nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;C:chloroplast;MOFBPA O.I. C.G. H.G.
124.1 99.9 56.9 At5g43980 834421 PDLP1 (PLASMODESMATA-LOCATED PROTEIN 1) Encodes a plasmodesmal protein that affects the intercellular movement of molecules through the plasmodesmata. The cytoplasmic C-terminal portion of the protein is connected to the apoplastic N-terminal portion of the protein by a single transmembrane domain (TMD). It is transported to the plasmodesmata through the secretory pathway. PDLP1 has two DUF26 domains and a signal peptide, but the proper localization of the protein appears to depend on the TMD. O.I. C.G. H.G.
123.5 99.9 300.6 At3g07800 819971 thymidine kinase, putative F:thymidine kinase activity, ATP binding;P:pyrimidine deoxyribonucleoside interconversion, anaerobic respiration;C:cellular_component unknown;BOVMPAF O.I. C.G. H.G.
123.4 99.9 38.4 At5g64060 836527 anac103 (Arabidopsis NAC domain containing protein 103) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P O.I. C.G. H.G.
121.0 99.9 47.9 At3g20490 821595 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBP O.I. C.G. H.G.
118.8 99.9 72.6 At5g24280 832495 - F:unknown;P:unknown;C:unknown;PMOBF O.I. C.G. H.G.
115.7 99.9 40.8 At5g40840 834084 SYN2 Cohesion family protein SYN2 (SYN2). O.I. C.G. H.G.
111.3 99.9 78.9 At2g47680 819381 zinc finger (CCCH type) helicase family protein F:helicase activity, zinc ion binding, nucleic acid binding, ATP binding;P:nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;C:chloroplast;MBOFPV O.I. C.G. H.G.
111.2 99.9 30.8 At1g44510 3767344 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
109.7 99.9 29.3 At4g01920 828197 DC1 domain-containing protein F:unknown;P:intracellular signaling cascade;C:cellular_component unknown;PMO O.I. C.G. H.G.
109.6 99.9 72.4 At5g53830 835464 VQ motif-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFBM O.I. C.G. H.G.
105.5 99.9 79.8 At1g51380 841562 eukaryotic translation initiation factor 4A, putative / eIF-4A, putative F:helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding;P:unknown;C:cellular_component unknown;BOMFPAV O.I. C.G. H.G.
104.8 99.9 53.2 At5g43080 834324 CYCA3 F:cyclin-dependent protein kinase regulator activity;P:regulation of cell cycle;C:nucleus;MPOFV O.I. C.G. H.G.
103.2 99.9 23.1 At1g58160 842183 jacalin lectin family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
102.3 99.9 143.1 At2g47260 819339 WRKY23 member of WRKY Transcription Factor; Group I O.I. C.G. H.G.
102.0 99.9 72.7 At1g66620 842980 seven in absentia (SINA) protein, putative F:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:multicellular organismal development, protein ubiquitination, ubiquitin-dependent protein catabolic process;C:nucleus;MOFPBVA O.I. C.G. H.G.
101.7 99.9 24.0 At3g55700 824736 UDP-glucoronosyl/UDP-glucosyl transferase family protein F:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBVOF O.I. C.G. H.G.
98.3 99.9 132.6 At1g69770 843313 CMT3 (chromomethylase 3) Encodes a chromomethylase involved in methylating cytosine residues at non-CG sites. Involved in preferentially methylating transposon-related sequences, reducing their mobility. CMT3 interacts with an Arabidopsis homologue of HP1 (heterochromatin protein 1), which in turn interacts with methylated histones. Involved in gene silencing. O.I. C.G. H.G.
96.8 99.9 28.1 At3g29220 822576 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
96.5 99.9 21.1 At1g59850 842279 binding F:binding;P:biological_process unknown;C:cellular_component unknown;MOFPB O.I. C.G. H.G.
96.2 99.9 177.8 At3g27400 822361 pectate lyase family protein F:pectate lyase activity;P:biological_process unknown;C:endomembrane system;BPFO O.I. C.G. H.G.
94.2 99.9 41.1 At5g61690 836291 ATATH15 member of ATH subfamily O.I. C.G. H.G.
94.1 99.9 34.3 At1g63540 842659 hydroxyproline-rich glycoprotein family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOBPVA O.I. C.G. H.G.
94.0 99.9 60.2 At2g38340 818414 AP2 domain-containing transcription factor, putative (DRE2B) encodes a member of the DREB subfamily A-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are eight members in this subfamily including DREB2A AND DREB2B that are involved in response to drought. O.I. C.G. H.G.
89.5 99.9 16.3 At1g33500 840244 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAV O.I. C.G. H.G.
89.4 99.9 72.0 At1g23550 838965 SRO2 (SIMILAR TO RCD ONE 2) Encodes a protein with similarity to RCD1 but without the WWE domain. The protein does have a PARP signature upstream of the C-terminal protein interaction domain. The PARP signature may bind NAD+ and attach the ADP-ribose-moiety from NAD+ to the target molecule. Its presence suggests a role for the protein in ADP ribosylation. O.I. C.G. H.G.
88.0 99.9 29.1 At5g03780 831726 TRFL10 (TRF-LIKE 10) Encodes a protein whose sequence is similar to human telomere proteins. This belongs to TRFL family 2, which do not show DNA binding in vitro. O.I. C.G. H.G.
87.6 99.9 15.5 At5g03360 831864 DC1 domain-containing protein F:unknown;P:unknown;C:cellular_component unknown;PBOVMA O.I. C.G. H.G.
86.5 99.9 33.1 At3g12910 820475 transcription factor F:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;P O.I. C.G. H.G.
86.5 99.9 22.1 At4g05370 825885 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
86.1 99.9 262.4 At3g30396 3769077 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
85.8 99.9 57.8 At5g50130 835078 short-chain dehydrogenase/reductase (SDR) family protein F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPA O.I. C.G. H.G.
84.9 99.9 74.4 At2g46180 819225 GC4 (golgin candidate 4) This gene is predicted to encode a protein that functions as a Golgi apparatus structural component known as a golgin in mammals and yeast. A fluorescently-tagged version of GC4 co-localizes with Golgi markers, and this localization appears to be replicated using the C-terminal (169 aa) portion of the protein. O.I. C.G. H.G.
84.7 99.9 49.7 At3g25100 822101 CDC45 (cell division cycle 45) Required for normal meiosis, may act in the last round of DNA replication prior to meiosis, sequence similar to yeast CDC45 O.I. C.G. H.G.
83.5 99.9 33.6 At2g16450 816143 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
83.0 99.9 71.7 At5g51480 835222 SKS2 (SKU5 SIMILAR 2) F:oxidoreductase activity, copper ion binding;P:unknown;C:anchored to plasma membrane, plasma membrane, anchored to membrane;FBPMOA O.I. C.G. H.G.
82.6 99.9 249.7 At2g12240 3768292 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
81.6 99.9 145.5 At1g51700 841595 ADOF1 Encodes dof zinc finger protein (adof1). O.I. C.G. H.G.
80.9 99.9 38.0 At1g02970 839453 WEE1 (ARABIDOPSIS WEE1 KINASE HOMOLOG) Protein kinase that negatively regulates the entry into mitosis. O.I. C.G. H.G.
79.4 99.9 70.9 At4g39830 830142 L-ascorbate oxidase, putative F:oxidoreductase activity, L-ascorbate oxidase activity, copper ion binding;P:oxidation reduction;C:endomembrane system, extracellular region;BFPMOA O.I. C.G. H.G.
79.2 99.9 65.2 At2g44070 819013 GTP binding / translation initiation factor F:GTP binding, translation initiation factor activity;P:translational initiation, cellular metabolic process;C:eukaryotic translation initiation factor 2B complex;OBMFAP O.I. C.G. H.G.
79.1 99.9 24.4 At3g54270 824594 sucrose-phosphatase 3 (SPP3) F:phosphatase activity, magnesium ion binding, sucrose-phosphatase activity, catalytic activity;P:sucrose biosynthetic process, metabolic process;C:unknown;BPOA O.I. C.G. H.G.
79.0 99.9 23.3 At3g30360 822737 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
76.9 99.9 42.8 At4g01910 827105 DC1 domain-containing protein F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;PMO O.I. C.G. H.G.
73.7 99.9 234.5 At2g10640 3767859 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
73.7 99.9 162.8 At2g02560 814786 CAND1 (CULLIN-ASSOCIATED AND NEDDYLATION DISSOCIATED) Arabidopsis thaliana homolog of human CAND1 (cullin-associated and neddylation-dissociated). Putative similarity to TBP-interacting protein TIP120. Ubiquitously expressed in plant tissues throughout development. T-DNA insertion mutant plants were completely sterile and resistant to sirtinol and auxin, but not to gibberellins or brassinolide. Displayed developmental phenotypes similar to those of axr1, namely, short petioles, downwardly curling leaves, shorter inflorescence. Required for SCF function and appears to modulate SCF complex cycling. Physically interacts with CUL1. O.I. C.G. H.G.
72.5 99.9 75.5 At3g12510 820430 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PB O.I. C.G. H.G.
71.5 99.9 30.2 At3g61340 825306 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
71.4 99.9 98.7 At5g61000 836221 replication protein, putative F:DNA binding, nucleic acid binding;P:DNA replication;C:nucleus;PMOFA O.I. C.G. H.G.
70.6 99.9 63.3 At2g02220 814753 PSKR1 (PHYTOSULFOKIN RECEPTOR 1) Encodes a protein interacting with phytosulfokine, a five amino acid sulfated peptide (YIYTQ). O.I. C.G. H.G.
70.4 99.9 40.6 At5g25580 832633 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFOBV O.I. C.G. H.G.
70.3 99.9 212.3 At2g12300 3768253 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
68.9 99.9 31.4 At4g35740 829727 RecQl3 F:helicase activity, ATP-dependent helicase activity, nucleic acid binding, ATP binding;P:DNA recombination;C:cellular_component unknown;BOMFPAV O.I. C.G. H.G.
68.6 99.9 167.0 At5g43330 834351 malate dehydrogenase, cytosolic, putative F:in 6 functions;P:cellular carbohydrate metabolic process, glycolysis, malate metabolic process, carbohydrate metabolic process, metabolic process;C:plasma membrane;BOMPFA O.I. C.G. H.G.
68.1 99.9 67.6 At1g66040 842917 VIM4 (VARIANT IN METHYLATION 4) predicted to encode a protein with an N-terminal PHD domain and two RING domains surrounding an SRA domain. Attempts to isolate ORTH4/VIM4 cDNA through RT-PCR were unsuccessful and analysis of the expression of this gene is difficult since it shares 99% nucleotide identity with ORTH5/VIM2. O.I. C.G. H.G.
68.0 99.9 70.1 At5g15540 831407 EMB2773 (EMBRYO DEFECTIVE 2773) Encodes Adherin SCC2. Essential for viability. Required for normal seed development. Plays a role in the establishment of sister-chromatid cohesion and chromosome organization during meiosis. O.I. C.G. H.G.
67.8 99.9 151.2 At1g19850 838573 MP (MONOPTEROS) Encodes a transcription factor (IAA24) mediating embryo axis formation and vascular development. Similar to AUXIN RESPONSIVE FACTOR 1 (ARF1) shown to bind to auxin responsive elements (AREs), and to the maize transcriptional activator VIVIPAROUS 1( VP1). In situ hybridization shows expression in provascular tissue of embryos, the emerging shoot primordia, then is restricted to provascular tissue, and in the root central vascular cylinder. O.I. C.G. H.G.
67.5 99.8 20.2 At2g40530 818648 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
67.2 99.8 56.3 At2g15790 816074 SQN (SQUINT) SQN encodes the Arabidopsis homolog of cyclophilin 40 (CyP40). It is specifically required for the vegetative but not the reproductive maturation of the shoot. O.I. C.G. H.G.
67.1 99.8 164.5 At2g29440 817493 ATGSTU6 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 6) Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). O.I. C.G. H.G.
66.0 99.8 34.1 At3g48425 824001 endonuclease/exonuclease/phosphatase family protein F:hydrolase activity, nuclease activity;P:DNA repair;C:chloroplast;BOMPFA O.I. C.G. H.G.
65.7 99.8 24.0 At3g48770 824038 ATP binding / DNA binding F:DNA binding, ATP binding;P:biological_process unknown;C:chloroplast;PMBOFA O.I. C.G. H.G.
65.5 99.8 44.1 At4g01860 827918 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;MBFOPA O.I. C.G. H.G.
64.9 99.8 198.7 At2g21790 816715 RNR1 (RIBONUCLEOTIDE REDUCTASE 1) encodes large subunit of ribonucleotide reductase involved in the production of deoxyribonucleoside triphosphates (dNTPs) for DNA replication and repair O.I. C.G. H.G.
64.0 99.8 45.5 At5g14930 831345 SAG101 (SENESCENCE-ASSOCIATED GENE 101) encodes an acyl hydrolase involved in senescence . O.I. C.G. H.G.
63.8 99.8 104.0 At2g02860 814817 SUT2 (SUCROSE TRANSPORTER 2) encodes a sucrose transporter in sieve elements and a number of sink tissues and cell types. Gene expression is induced by wounding. O.I. C.G. H.G.
62.9 99.8 229.8 At2g27080 817250 harpin-induced protein-related / HIN1-related / harpin-responsive protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
711.2	100.0	162.6	At4g21070	827854	ATBRCA1	Encodes AtBRCA1, an ortholog of the human breast cancer susceptibility gene 1. Contains one N-terminal RING finger, two C-terminal BRCT and the p300/CBP interacting domain. Strongly induced by gamma rays, consistent with a putative role in DNA repair and in cell cycle control.	O.I.	C.G.	H.G.
383.7	100.0	124.4	At1g59660	842256	nucleoporin family protein	F:transporter activity;P:transport;C:chloroplast, nuclear pore;MBOFPVA	O.I.	C.G.	H.G.
380.7	100.0	46.7	At3g61090	825281	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
341.0	100.0	24.2	At3g17260	3768760	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
337.0	100.0	100.9	At5g61740	836296	ATATH14	member of ATH subfamily	O.I.	C.G.	H.G.
310.0	100.0	90.8	At4g01970	828186	AtSTS (Arabidopsis thaliana stachyose synthase)	Encodes a putative stachyose synthetase.	O.I.	C.G.	H.G.
266.2	100.0	74.1	At3g17110	3768803	-	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
260.6	100.0	132.3	At1g44130	841016	nucellin protein, putative	F:aspartic-type endopeptidase activity;P:proteolysis;C:plant-type cell wall;POMF	O.I.	C.G.	H.G.
258.1	100.0	76.1	At5g20850	832208	ATRAD51	Encodes a homolog of yeast RAD51. Its mRNA is most abundant in early flower buds and is expressed at high levels in exponentially growing cells in suspension cultures and is induced in response to gamma radiation.	O.I.	C.G.	H.G.
236.7	100.0	23.3	At4g25330	828636	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
228.8	100.0	94.6	At1g36180	840522	ACC2 (ACETYL-COA CARBOXYLASE 2)	acetyl-CoA carboxylase 2 (ACC2)	O.I.	C.G.	H.G.
207.3	100.0	128.9	At5g47950	834846	transferase family protein	F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFO	O.I.	C.G.	H.G.
206.1	100.0	129.0	At4g02390	828049	APP (ARABIDOPSIS POLY(ADP-RIBOSE) POLYMERASE)	Encodes a DNA dependent nuclear poly (ADP-ribose) polymerase (E.C.2.4.2.30), thought to be involved in post-translational modification .	O.I.	C.G.	H.G.
206.0	100.0	274.1	At2g04000	814926	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
201.3	100.0	43.2	At4g34320	829582	unknown protein	F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;PBOM	O.I.	C.G.	H.G.
199.7	100.0	195.3	At3g48100	823965	ARR5 (ARABIDOPSIS RESPONSE REGULATOR 5)	Encodes a transcription repressor that mediates a negative feedback loop in cytokinin signalling. ARR5 expression is upregulated by Class I KNOX genes. Arr5 protein is stabilized by cytokinin in a two-component phosphorelay.	O.I.	C.G.	H.G.
191.2	100.0	132.6	At1g60030	842297	xanthine/uracil permease family protein	F:transmembrane transporter activity;P:transport;C:plasma membrane, membrane;BOMPFAV	O.I.	C.G.	H.G.
187.7	100.0	54.3	At1g08260	837346	TIL1 (TILTED 1)	Similar to POL2A, DNA polymerase epsilon catalytic subunit. Essential for Arabidopsis growth. Null homozygotes are embryo lethal, partial loss of function alleles show embryo patterning defects such as root pole displacement. Delayed progression through cell cycle results in embryos with smaller numbers of larger cells.	O.I.	C.G.	H.G.
186.5	100.0	38.2	At3g29610	822626	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
178.8	100.0	102.1	At4g22960	828395	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPB	O.I.	C.G.	H.G.
171.6	100.0	123.0	At2g02230	814754	AtPP2-B1 (Phloem protein 2-B1)	F:carbohydrate binding;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
164.5	100.0	60.7	At5g02220	831792	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
160.2	99.9	71.1	At4g30430	829166	TET9 (TETRASPANIN9)	Member of TETRASPANIN family	O.I.	C.G.	H.G.
154.3	99.9	93.1	At4g37490	829904	CYCB1	Cyclin-dependent protein kinase CYCB1;1. Functions as an effector of growth control at G2/M. Regulated by TCP20.	O.I.	C.G.	H.G.
154.0	99.9	122.4	At5g48720	834930	XRI1 (X-RAY INDUCED TRANSCRIPT 1)	Encodes XRI1 (X-ray induced 1). Required for post-meiotic stages of pollen development and male and female meiosis. Maybe required for meiotic DNA repair. Inducible by X-ray. Homozygous xri1 mutants are sterile due to extensive chromosome fragmentation.	O.I.	C.G.	H.G.
153.9	99.9	58.8	At4g01270	828038	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;MOPFBAV	O.I.	C.G.	H.G.
150.7	99.9	331.8	At2g01610	814690	invertase/pectin methylesterase inhibitor family protein	F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
147.0	99.9	38.2	At4g01930	828198	DC1 domain-containing protein	F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;PMO	O.I.	C.G.	H.G.
142.9	99.9	99.8	At3g28150	822439	unknown protein	F:unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
142.0	99.9	41.3	At4g29170	829038	ATMND1	A homolog of yeast, mouse and human mnd1delta protein. Null mutants exhibit normal vegetative and flower development; however, during prophase I, chromosomes become fragmented resulting in random distribution of the fragments between polyads. Both male and female meiosis are defective and strong accumulation of AtRAD51 was observed in the inflorescence nuclei of mutant plants. Similarly to its yeast and animal homologues, AtMnd1 might play a role in DSB repair during meiosis.	O.I.	C.G.	H.G.
140.8	99.9	47.2	At4g39320	830087	microtubule-associated protein-related	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MOFBP	O.I.	C.G.	H.G.
137.6	99.9	71.5	At1g20350	838623	ATTIM17-1	mitochondrial inner membrane translocase	O.I.	C.G.	H.G.
137.0	99.9	47.9	At2g06510	815209	RPA1A (REPLICATION PROTEIN A 1A)	Encodes a homolog of Replication Protein A that is involved in meiosis I in pollen mother cells. rpa1a mutants have a reduced number of class I crossovers. The protein is located in chromatin-associated foci in early leptotene and can be detected in these foci until late pachytene of meiosis I.	O.I.	C.G.	H.G.
135.3	99.9	28.9	At1g20750	838665	helicase-related	F:in 6 functions;P:nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;C:chloroplast;MOFBPA	O.I.	C.G.	H.G.
124.1	99.9	56.9	At5g43980	834421	PDLP1 (PLASMODESMATA-LOCATED PROTEIN 1)	Encodes a plasmodesmal protein that affects the intercellular movement of molecules through the plasmodesmata. The cytoplasmic C-terminal portion of the protein is connected to the apoplastic N-terminal portion of the protein by a single transmembrane domain (TMD). It is transported to the plasmodesmata through the secretory pathway. PDLP1 has two DUF26 domains and a signal peptide, but the proper localization of the protein appears to depend on the TMD.	O.I.	C.G.	H.G.
123.5	99.9	300.6	At3g07800	819971	thymidine kinase, putative	F:thymidine kinase activity, ATP binding;P:pyrimidine deoxyribonucleoside interconversion, anaerobic respiration;C:cellular_component unknown;BOVMPAF	O.I.	C.G.	H.G.
123.4	99.9	38.4	At5g64060	836527	anac103 (Arabidopsis NAC domain containing protein 103)	F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P	O.I.	C.G.	H.G.
121.0	99.9	47.9	At3g20490	821595	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBP	O.I.	C.G.	H.G.
118.8	99.9	72.6	At5g24280	832495	-	F:unknown;P:unknown;C:unknown;PMOBF	O.I.	C.G.	H.G.
115.7	99.9	40.8	At5g40840	834084	SYN2	Cohesion family protein SYN2 (SYN2).	O.I.	C.G.	H.G.
111.3	99.9	78.9	At2g47680	819381	zinc finger (CCCH type) helicase family protein	F:helicase activity, zinc ion binding, nucleic acid binding, ATP binding;P:nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;C:chloroplast;MBOFPV	O.I.	C.G.	H.G.
111.2	99.9	30.8	At1g44510	3767344	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
109.7	99.9	29.3	At4g01920	828197	DC1 domain-containing protein	F:unknown;P:intracellular signaling cascade;C:cellular_component unknown;PMO	O.I.	C.G.	H.G.
109.6	99.9	72.4	At5g53830	835464	VQ motif-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFBM	O.I.	C.G.	H.G.
105.5	99.9	79.8	At1g51380	841562	eukaryotic translation initiation factor 4A, putative / eIF-4A, putative	F:helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding;P:unknown;C:cellular_component unknown;BOMFPAV	O.I.	C.G.	H.G.
104.8	99.9	53.2	At5g43080	834324	CYCA3	F:cyclin-dependent protein kinase regulator activity;P:regulation of cell cycle;C:nucleus;MPOFV	O.I.	C.G.	H.G.
103.2	99.9	23.1	At1g58160	842183	jacalin lectin family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
102.3	99.9	143.1	At2g47260	819339	WRKY23	member of WRKY Transcription Factor; Group I	O.I.	C.G.	H.G.
102.0	99.9	72.7	At1g66620	842980	seven in absentia (SINA) protein, putative	F:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:multicellular organismal development, protein ubiquitination, ubiquitin-dependent protein catabolic process;C:nucleus;MOFPBVA	O.I.	C.G.	H.G.
101.7	99.9	24.0	At3g55700	824736	UDP-glucoronosyl/UDP-glucosyl transferase family protein	F:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBVOF	O.I.	C.G.	H.G.
98.3	99.9	132.6	At1g69770	843313	CMT3 (chromomethylase 3)	Encodes a chromomethylase involved in methylating cytosine residues at non-CG sites. Involved in preferentially methylating transposon-related sequences, reducing their mobility. CMT3 interacts with an Arabidopsis homologue of HP1 (heterochromatin protein 1), which in turn interacts with methylated histones. Involved in gene silencing.	O.I.	C.G.	H.G.
96.8	99.9	28.1	At3g29220	822576	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
96.5	99.9	21.1	At1g59850	842279	binding	F:binding;P:biological_process unknown;C:cellular_component unknown;MOFPB	O.I.	C.G.	H.G.
96.2	99.9	177.8	At3g27400	822361	pectate lyase family protein	F:pectate lyase activity;P:biological_process unknown;C:endomembrane system;BPFO	O.I.	C.G.	H.G.
94.2	99.9	41.1	At5g61690	836291	ATATH15	member of ATH subfamily	O.I.	C.G.	H.G.
94.1	99.9	34.3	At1g63540	842659	hydroxyproline-rich glycoprotein family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOBPVA	O.I.	C.G.	H.G.
94.0	99.9	60.2	At2g38340	818414	AP2 domain-containing transcription factor, putative (DRE2B)	encodes a member of the DREB subfamily A-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are eight members in this subfamily including DREB2A AND DREB2B that are involved in response to drought.	O.I.	C.G.	H.G.
89.5	99.9	16.3	At1g33500	840244	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAV	O.I.	C.G.	H.G.
89.4	99.9	72.0	At1g23550	838965	SRO2 (SIMILAR TO RCD ONE 2)	Encodes a protein with similarity to RCD1 but without the WWE domain. The protein does have a PARP signature upstream of the C-terminal protein interaction domain. The PARP signature may bind NAD+ and attach the ADP-ribose-moiety from NAD+ to the target molecule. Its presence suggests a role for the protein in ADP ribosylation.	O.I.	C.G.	H.G.
88.0	99.9	29.1	At5g03780	831726	TRFL10 (TRF-LIKE 10)	Encodes a protein whose sequence is similar to human telomere proteins. This belongs to TRFL family 2, which do not show DNA binding in vitro.	O.I.	C.G.	H.G.
87.6	99.9	15.5	At5g03360	831864	DC1 domain-containing protein	F:unknown;P:unknown;C:cellular_component unknown;PBOVMA	O.I.	C.G.	H.G.
86.5	99.9	33.1	At3g12910	820475	transcription factor	F:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;P	O.I.	C.G.	H.G.
86.5	99.9	22.1	At4g05370	825885	-	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
86.1	99.9	262.4	At3g30396	3769077	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
85.8	99.9	57.8	At5g50130	835078	short-chain dehydrogenase/reductase (SDR) family protein	F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPA	O.I.	C.G.	H.G.
84.9	99.9	74.4	At2g46180	819225	GC4 (golgin candidate 4)	This gene is predicted to encode a protein that functions as a Golgi apparatus structural component known as a golgin in mammals and yeast. A fluorescently-tagged version of GC4 co-localizes with Golgi markers, and this localization appears to be replicated using the C-terminal (169 aa) portion of the protein.	O.I.	C.G.	H.G.
84.7	99.9	49.7	At3g25100	822101	CDC45 (cell division cycle 45)	Required for normal meiosis, may act in the last round of DNA replication prior to meiosis, sequence similar to yeast CDC45	O.I.	C.G.	H.G.
83.5	99.9	33.6	At2g16450	816143	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
83.0	99.9	71.7	At5g51480	835222	SKS2 (SKU5 SIMILAR 2)	F:oxidoreductase activity, copper ion binding;P:unknown;C:anchored to plasma membrane, plasma membrane, anchored to membrane;FBPMOA	O.I.	C.G.	H.G.
82.6	99.9	249.7	At2g12240	3768292	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
81.6	99.9	145.5	At1g51700	841595	ADOF1	Encodes dof zinc finger protein (adof1).	O.I.	C.G.	H.G.
80.9	99.9	38.0	At1g02970	839453	WEE1 (ARABIDOPSIS WEE1 KINASE HOMOLOG)	Protein kinase that negatively regulates the entry into mitosis.	O.I.	C.G.	H.G.
79.4	99.9	70.9	At4g39830	830142	L-ascorbate oxidase, putative	F:oxidoreductase activity, L-ascorbate oxidase activity, copper ion binding;P:oxidation reduction;C:endomembrane system, extracellular region;BFPMOA	O.I.	C.G.	H.G.
79.2	99.9	65.2	At2g44070	819013	GTP binding / translation initiation factor	F:GTP binding, translation initiation factor activity;P:translational initiation, cellular metabolic process;C:eukaryotic translation initiation factor 2B complex;OBMFAP	O.I.	C.G.	H.G.
79.1	99.9	24.4	At3g54270	824594	sucrose-phosphatase 3 (SPP3)	F:phosphatase activity, magnesium ion binding, sucrose-phosphatase activity, catalytic activity;P:sucrose biosynthetic process, metabolic process;C:unknown;BPOA	O.I.	C.G.	H.G.
79.0	99.9	23.3	At3g30360	822737	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
76.9	99.9	42.8	At4g01910	827105	DC1 domain-containing protein	F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;PMO	O.I.	C.G.	H.G.
73.7	99.9	234.5	At2g10640	3767859	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
73.7	99.9	162.8	At2g02560	814786	CAND1 (CULLIN-ASSOCIATED AND NEDDYLATION DISSOCIATED)	Arabidopsis thaliana homolog of human CAND1 (cullin-associated and neddylation-dissociated). Putative similarity to TBP-interacting protein TIP120. Ubiquitously expressed in plant tissues throughout development. T-DNA insertion mutant plants were completely sterile and resistant to sirtinol and auxin, but not to gibberellins or brassinolide. Displayed developmental phenotypes similar to those of axr1, namely, short petioles, downwardly curling leaves, shorter inflorescence. Required for SCF function and appears to modulate SCF complex cycling. Physically interacts with CUL1.	O.I.	C.G.	H.G.
72.5	99.9	75.5	At3g12510	820430	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PB	O.I.	C.G.	H.G.
71.5	99.9	30.2	At3g61340	825306	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
71.4	99.9	98.7	At5g61000	836221	replication protein, putative	F:DNA binding, nucleic acid binding;P:DNA replication;C:nucleus;PMOFA	O.I.	C.G.	H.G.
70.6	99.9	63.3	At2g02220	814753	PSKR1 (PHYTOSULFOKIN RECEPTOR 1)	Encodes a protein interacting with phytosulfokine, a five amino acid sulfated peptide (YIYTQ).	O.I.	C.G.	H.G.
70.4	99.9	40.6	At5g25580	832633	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFOBV	O.I.	C.G.	H.G.
70.3	99.9	212.3	At2g12300	3768253	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
68.9	99.9	31.4	At4g35740	829727	RecQl3	F:helicase activity, ATP-dependent helicase activity, nucleic acid binding, ATP binding;P:DNA recombination;C:cellular_component unknown;BOMFPAV	O.I.	C.G.	H.G.
68.6	99.9	167.0	At5g43330	834351	malate dehydrogenase, cytosolic, putative	F:in 6 functions;P:cellular carbohydrate metabolic process, glycolysis, malate metabolic process, carbohydrate metabolic process, metabolic process;C:plasma membrane;BOMPFA	O.I.	C.G.	H.G.
68.1	99.9	67.6	At1g66040	842917	VIM4 (VARIANT IN METHYLATION 4)	predicted to encode a protein with an N-terminal PHD domain and two RING domains surrounding an SRA domain. Attempts to isolate ORTH4/VIM4 cDNA through RT-PCR were unsuccessful and analysis of the expression of this gene is difficult since it shares 99% nucleotide identity with ORTH5/VIM2.	O.I.	C.G.	H.G.
68.0	99.9	70.1	At5g15540	831407	EMB2773 (EMBRYO DEFECTIVE 2773)	Encodes Adherin SCC2. Essential for viability. Required for normal seed development. Plays a role in the establishment of sister-chromatid cohesion and chromosome organization during meiosis.	O.I.	C.G.	H.G.
67.8	99.9	151.2	At1g19850	838573	MP (MONOPTEROS)	Encodes a transcription factor (IAA24) mediating embryo axis formation and vascular development. Similar to AUXIN RESPONSIVE FACTOR 1 (ARF1) shown to bind to auxin responsive elements (AREs), and to the maize transcriptional activator VIVIPAROUS 1( VP1). In situ hybridization shows expression in provascular tissue of embryos, the emerging shoot primordia, then is restricted to provascular tissue, and in the root central vascular cylinder.	O.I.	C.G.	H.G.
67.5	99.8	20.2	At2g40530	818648	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
67.2	99.8	56.3	At2g15790	816074	SQN (SQUINT)	SQN encodes the Arabidopsis homolog of cyclophilin 40 (CyP40). It is specifically required for the vegetative but not the reproductive maturation of the shoot.	O.I.	C.G.	H.G.
67.1	99.8	164.5	At2g29440	817493	ATGSTU6 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 6)	Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).	O.I.	C.G.	H.G.
66.0	99.8	34.1	At3g48425	824001	endonuclease/exonuclease/phosphatase family protein	F:hydrolase activity, nuclease activity;P:DNA repair;C:chloroplast;BOMPFA	O.I.	C.G.	H.G.
65.7	99.8	24.0	At3g48770	824038	ATP binding / DNA binding	F:DNA binding, ATP binding;P:biological_process unknown;C:chloroplast;PMBOFA	O.I.	C.G.	H.G.
65.5	99.8	44.1	At4g01860	827918	transducin family protein / WD-40 repeat family protein	F:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;MBFOPA	O.I.	C.G.	H.G.
64.9	99.8	198.7	At2g21790	816715	RNR1 (RIBONUCLEOTIDE REDUCTASE 1)	encodes large subunit of ribonucleotide reductase involved in the production of deoxyribonucleoside triphosphates (dNTPs) for DNA replication and repair	O.I.	C.G.	H.G.
64.0	99.8	45.5	At5g14930	831345	SAG101 (SENESCENCE-ASSOCIATED GENE 101)	encodes an acyl hydrolase involved in senescence .	O.I.	C.G.	H.G.
63.8	99.8	104.0	At2g02860	814817	SUT2 (SUCROSE TRANSPORTER 2)	encodes a sucrose transporter in sieve elements and a number of sink tissues and cell types. Gene expression is induced by wounding.	O.I.	C.G.	H.G.
62.9	99.8	229.8	At2g27080	817250	harpin-induced protein-related / HIN1-related / harpin-responsive protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.

Back to the CoP portal site

Back to the KAGIANA project homepage

GSM ID	GSM133945
Assay name	Murray_2-1_T0-APH_Rep1_ATH1
GSE experiment	GSE5747: Genome-wide cell cycle studies

Microarray experiments to specifically-expressed genes

GSM ID GSM133945 Assay name Murray_2-1_T0-APH_Rep1_ATH1 GSE experiment GSE5747: Genome-wide cell cycle studies

GSM ID GSM133945

Assay name Murray_2-1_T0-APH_Rep1_ATH1

GSE experiment GSE5747: Genome-wide cell cycle studies