Microarray experiments to specifically-expressed genes

GSM ID GSM133926
Assay name Weigel_2-18_CHIP-208-C_Rep3_ATH1
GSE experiment GSE5746: FRI FLC combos

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
38.099.816.4At3g27920822415ATMYB0 (MYB DOMAIN PROTEIN 0)Encodes a Myb-like protein that is required for induction of trichome development.O.I.C.G.H.G.
30.599.730.7At1g74890843828ARR15 (RESPONSE REGULATOR 15)Encodes a nuclear response regulator that acts as a negative regulator in cytokinin-mediated signal transduction. Transcript accumulates in leaves and roots in response to cytokinin treatment.O.I.C.G.H.G.
27.599.7273.8At1g62500842547protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;MBPOFVAO.I.C.G.H.G.
25.199.6262.3At4g22490828344protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PO.I.C.G.H.G.
24.499.692.7At4g37750829931ANT (AINTEGUMENTA)ANT is required for control of cell proliferation and encodes a putative transcriptional regulator similar to AP2. Loss of function alleles have reduced fertility, abnormal ovules and abnormal lateral organs. Expressed specifically in the chalaza and in floral organ primordia.O.I.C.G.H.G.
24.399.610.4At4g03270828000CYCD6F:cyclin-dependent protein kinase activity;P:regulation of cell cycle;C:nucleus;MPOFVO.I.C.G.H.G.
23.899.646.7At5g59330836052lipid bindingF:lipid binding;P:lipid transport;C:endomembrane systemO.I.C.G.H.G.
22.699.67.7At1g05370837038-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;FPMOO.I.C.G.H.G.
22.599.663.7At3g23890821972TOPII (TOPOISOMERASE II)Encodes a topoisomerase II that is highly expressed in young seedlings. The protein is localized in the nucleus and gene expression levels are increased in proliferative tissues.O.I.C.G.H.G.
21.899.619.5At1g68640843194PAN (PERIANTHIA)Encodes bZIP-transcription factor. Mutant plants have extra floral organs.O.I.C.G.H.G.
21.599.624.3At3g05470819712formin homology 2 domain-containing protein / FH2 domain-containing proteinF:actin binding;P:cellular component organization, actin cytoskeleton organization;C:endomembrane system;MPOFVBAO.I.C.G.H.G.
20.999.691.8At1g02730839467ATCSLD5Encodes a gene similar to cellulose synthase. Knock-out mutant has reduced growth, reduced xylan level and reduced xylan synthase activity in stems.O.I.C.G.H.G.
20.399.618.1At1g04160839246XIB (MYOSIN XI B)Encodes a member of the type XI myosin protein family involved in root hair elongation.O.I.C.G.H.G.
19.399.645.4At5g25090832580plastocyanin-like domain-containing proteinF:electron carrier activity, copper ion binding;P:unknown;C:anchored to plasma membrane, plasma membrane, anchored to membrane;PO.I.C.G.H.G.
19.199.627.3At2g29890817539VLN1 (VILLIN-LIKE 1)Encodes a ubiquitously expressed villin-like protein, whose mRNA may be alternatively processed. Villin belongs to a superfamily of actin binding proteins called the villin/gelsolin family. Animal villins are involved in actin binding. VLN1 protein co-localizes with actin filaments in several assays. VLN1 binds and bundles F-actin in a calcium-independent manner. It does not nucleate, cap or sever actin filaments and it stabilizes actin filaments, protecting them from ADF-mediated depolymerization.O.I.C.G.H.G.
18.999.562.3At4g15830827264bindingF:binding;P:biological_process unknown;C:cellular_component unknown;MPOFO.I.C.G.H.G.
18.899.528.4At4g02800828171unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;OMFBPVAO.I.C.G.H.G.
18.899.519.9At3g63300825505phosphoinositide bindingF:phosphoinositide binding;P:signal transduction;C:unknown;OMPBFO.I.C.G.H.G.
18.599.547.6At1g66250842942glycosyl hydrolase family 17 proteinF:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to plasma membrane, plasma membrane, anchored to membrane;PFOO.I.C.G.H.G.
18.199.5310.1At4g29030829024glycine-rich proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BMOPFVAO.I.C.G.H.G.
18.199.528.5At1g06100837119fatty acid desaturase family proteinF:oxidoreductase activity;P:lipid metabolic process;C:unknown;BOMFPVO.I.C.G.H.G.
17.199.526.2At3g22790821850kinase interacting family proteinF:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MOBFPAVO.I.C.G.H.G.
16.899.5116.0At2g42610818861LSH10 (LIGHT SENSITIVE HYPOCOTYLS 10)F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO.I.C.G.H.G.
16.899.548.3At2g36570818230leucine-rich repeat transmembrane protein kinase, putativeF:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:plasma membrane;PMOBFVAO.I.C.G.H.G.
16.499.563.3At1g57820842157VIM1 (VARIANT IN METHYLATION 1)Encodes a 645-amino acid methylcytosine-binding protein with a PHD domain, two RING finger domains, and an SRA domain that is involved in centromere heterochromatinization. This protein functions as an E3 ubiquitin ligase in vitro. The protein has been shown to bind to methylated cytosines of CG, CNG and CNN motifs via its SRA domain but has a preference for the former. It plays a role in the establishment/maintenance of chromatin structure during cell division and is localized in the nucleus. Plants over-expressing VIM1/ORTH2 show an inhibition in root growth and a delay in flowering. Both over-expression of GFP:ORTH2 and loss of ORTH2/VIM1 lead to decreased levels of DNA methylation. GFP:ORTH2 over-expressers also have increased levels of FWA transcripts.O.I.C.G.H.G.
16.199.515.8At1g72670843599iqd8 (IQ-domain 8)F:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;PMFOO.I.C.G.H.G.
16.099.537.9At5g37010833671unknown proteinF:molecular_function unknown;P:N-terminal protein myristoylation;C:unknown;MOFBPVAO.I.C.G.H.G.
15.799.5132.7At4g38680830024GRP2 (GLYCINE RICH PROTEIN 2)Encodes a glycine-rich protein that binds nucleic acids and promotes DNA melting. Its transcript and protein levels are up-regulated in response to cold treatment with protein levels peaking earlier in shoots (~10-14 days) than in roots (~21 days). It is normally expressed in meristematic regions and developing tissues where cell division occurs. RNAi and antisense lines with lower levels of CSP2/GRP2 transcripts flower earlier than wild type plants and have some defects in anther and seed development.O.I.C.G.H.G.
15.699.533.5At1g18370838418HIK (HINKEL)Mutant has cytokinesis defects; seedling lethalO.I.C.G.H.G.
15.599.5123.5At1g13710837932CYP78A5member of CYP78AO.I.C.G.H.G.
15.599.533.8At5g43020834317leucine-rich repeat transmembrane protein kinase, putativeF:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVAO.I.C.G.H.G.
15.399.489.6At4g33260829462CDC20.2putative cdc20 protein (CDC20.2)O.I.C.G.H.G.
15.299.493.4At3g56370824804leucine-rich repeat transmembrane protein kinase, putativeF:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
15.199.456.1At3g23290821908--O.I.C.G.H.G.
14.999.445.2At5g48360834889formin homology 2 domain-containing protein / FH2 domain-containing proteinF:actin binding;P:cellular component organization, actin cytoskeleton organization;C:unknown;MPOFVBAO.I.C.G.H.G.
14.999.438.9At1g02690839517IMPA-6 (IMPORTIN ALPHA ISOFORM 6)Putative importin alpha isoform. When overexpressed can rescue the impa-4 decreased transformation susceptibility phenotype.O.I.C.G.H.G.
14.999.433.3At2g37080818284myosin heavy chain-relatedF:unknown;P:unknown;C:chloroplast;MOBFPAVO.I.C.G.H.G.
14.899.422.3At1g67040843024unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFO.I.C.G.H.G.
14.699.421.0At3g57830824952leucine-rich repeat transmembrane protein kinase, putativeF:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVAO.I.C.G.H.G.
14.599.454.3At5g65410836666HB25 (HOMEOBOX PROTEIN 25)Encodes ZFHD2, a member of the zinc finger homeodomain transcriptional factor family.O.I.C.G.H.G.
14.599.415.6At5g55520835646-F:unknown;P:biological_process unknown;C:unknown;MOBFPAVO.I.C.G.H.G.
14.599.412.2At3g59270825096syntaxin-related family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
14.499.453.1At4g34160829564CYCD3encodes a cyclin D-type protein involved in the switch from cell proliferation to the final stages of differentiation. The gene is transcriptionally regulated by cytokinin and brassinosteroid. Protein interacts with cyclin-dependent kinase inhibitor ICK1.O.I.C.G.H.G.
14.499.417.7At1g10980837641-F:unknown;P:biological_process unknown;C:vacuole;MFPOO.I.C.G.H.G.
14.399.426.1At2g07170815286bindingF:binding;P:biological_process unknown;C:cellular_component unknown;PFBOMAO.I.C.G.H.G.
14.399.422.9At4g00480827965myc-related transcription factor (MYC1)MYC-related protein with a basic helix-loop-helix motif at the C-terminus and a region similar to the maize B/R family at the N-terminusO.I.C.G.H.G.
14.399.413.9At1g55200841963protein kinase family proteinF:protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVAO.I.C.G.H.G.
14.199.4116.1At3g53190824485pectate lyase family proteinF:lyase activity, pectate lyase activity;P:biological_process unknown;C:anchored to membrane;BPFOO.I.C.G.H.G.
14.099.418.1At4g27240828832zinc finger (C2H2 type) family proteinF:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;PFOO.I.C.G.H.G.
14.099.49.8At1g51670841592unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
13.999.476.0At5g28640832968AN3 (ANGUSTIFOLIA 3)Encodes a protein with similarity to mammalian transcriptional coactivator that is involved in cell proliferation during leaf and flower development. Loss of function mutations have narrow, pointed leaves and narrow floral organs. AN3 interacts with members of the growth regulating factor (GRF) family of transcription factors.O.I.C.G.H.G.
13.999.465.3At2g43800818984formin homology 2 domain-containing protein / FH2 domain-containing proteinF:actin binding;P:cellular component organization, actin cytoskeleton organization;C:plasma membrane;MPFOBVAO.I.C.G.H.G.
13.999.421.3At3g55660824732ROPGEF6Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily.O.I.C.G.H.G.
13.999.412.1At4g21270827876ATK1 (ARABIDOPSIS THALIANA KINESIN 1)Encodes a kinesin-like motor protein heavy chain. Loss of function mutations have reduced fertility and are defective in spindle formation in male meiosis.O.I.C.G.H.G.
13.899.458.4At2g45190819127AFO (ABNORMAL FLORAL ORGANS)Encodes a member of the YABBY family of transcriptional regulators that is involved in abaxial cell type specification in leaves and fruits. YAB1 acts in a non-cell autonomous fashion within the meristem to affect phyllotactic patterning. The non-autonomous effect on the central region of the meristem is mediated through the activity if Lateral Suppressor (LAS).O.I.C.G.H.G.
13.899.416.9At5g55340835627long-chain-alcohol O-fatty-acyltransferase family protein / wax synthase family proteinF:acyltransferase activity;P:biological_process unknown;C:cellular_component unknown;BPOFO.I.C.G.H.G.
13.599.432.8At4g02850828160phenazine biosynthesis PhzC/PhzF family proteinF:catalytic activity;P:biosynthetic process;C:endomembrane system;BOMFPAO.I.C.G.H.G.
13.599.423.8At1g03780839140targeting protein-relatedHomolog of vertebrate TPX2. Protein has three domains involved in nuclear targeting, one in nuclear export and two in microtubule binding. Involved in mitotic spindle assembly during late prophase and early prometaphase.O.I.C.G.H.G.
13.499.437.8At2g22840816815AtGRF1 (GROWTH-REGULATING FACTOR 1)Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Mutants result in smaller leaves indicating the role of the gene in leaf development. Expressed in root, shoot and flowerO.I.C.G.H.G.
13.499.436.1At3g02210821245COBL1 (COBRA-LIKE PROTEIN 1 PRECURSOR)F:unknown;P:biological_process unknown;C:anchored to membrane;PO.I.C.G.H.G.
13.499.430.1At3g51280824291male sterility MS5, putativeF:binding;P:unknown;C:cellular_component unknown;OBPAFO.I.C.G.H.G.
13.199.4289.0At2g28790817428osmotin-like protein, putativeF:molecular_function unknown;P:response to other organism;C:plant-type cell wall;PFMBOO.I.C.G.H.G.
13.199.498.6At4g38660830022thaumatin, putativeF:molecular_function unknown;P:response to other organism;C:anchored to membrane;PFMBOVO.I.C.G.H.G.
13.099.498.0At1g08560837378SYP111 (SYNTAXIN OF PLANTS 111)member of SYP11 Gene FamilyO.I.C.G.H.G.
12.999.3140.1At4g31840829313plastocyanin-like domain-containing proteinF:electron carrier activity, copper ion binding;P:unknown;C:plasma membrane, anchored to membrane;PO.I.C.G.H.G.
12.999.321.2At4g24540828556AGL24 (AGAMOUS-LIKE 24)Encodes a MADS-box protein involved in flowering. Regulates the expression of SOC1 and is also upregulated by SOC1. Binds with IMK3 kinase domain. Phosphorylated by IMK3; likely to be a target for IMK3 kinase domain.O.I.C.G.H.G.
12.999.319.0At1g76310843964CYCB2core cell cycle genesO.I.C.G.H.G.
12.999.310.2At1g13400837900NUB (NUBBIN)Along with JAG, it is involved in stamen and carpel development. Expression is limited to the adaxial side of lateral organs. Activated by AGAMOUS in a cal-1, ap1-1 background.O.I.C.G.H.G.
12.899.317.6At5g66940836828Dof-type zinc finger domain-containing proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;POO.I.C.G.H.G.
12.699.338.1At3g17680821035-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMBFO.I.C.G.H.G.
12.699.316.8At1g16070838177AtTLP8 (TUBBY LIKE PROTEIN 8)Member of TLP familyO.I.C.G.H.G.
12.699.39.6At4g31805829309WRKY family transcription factorF:transcription factor activity;P:regulation of transcription, DNA-dependent;C:unknown;PMOBO.I.C.G.H.G.
12.599.359.7At3g04520819608THA2 (Threonine Aldolase 2)Encodes a threonine aldolase, involved in threonine degradation to glycine. Expressed in vascular tissue through out the plant.O.I.C.G.H.G.
12.599.346.1At3g14190820636unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
12.599.330.1At3g02120821311hydroxyproline-rich glycoprotein family proteinF:molecular_function unknown;P:response to cyclopentenone;C:cellular_component unknown;PO.I.C.G.H.G.
12.599.325.5At4g28950829016ROP9 (RHO-RELATED PROTEIN FROM PLANTS 9)A member of ROP GTPase gene family.O.I.C.G.H.G.
12.599.320.8At3g12170820394DNAJ heat shock N-terminal domain-containing proteinF:unfolded protein binding, heat shock protein binding;P:protein folding;C:cellular_component unknown;BOMFPAVO.I.C.G.H.G.
12.499.310.2At2g37390818315heavy-metal-associated domain-containing proteinF:metal ion binding;P:metal ion transport;C:cellular_component unknown;PBMFO.I.C.G.H.G.
12.499.38.4At5g11320831003YUC4 (YUCCA4)Belongs to the YUC gene family. Encodes a predicted flavin monooxygenase YUC4 involved in auxin biosynthesis and plant development.O.I.C.G.H.G.
12.399.389.0At3g02640821289unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;POO.I.C.G.H.G.
12.399.333.6At2g26180817158IQD6 (IQ-domain 6)F:calmodulin binding;P:unknown;C:cellular_component unknown;PMOFO.I.C.G.H.G.
12.399.321.3At5g28490832941LSH1 (LIGHT-DEPENDENT SHORT HYPOCOTYLS 1)Encodes a nuclear protein that mediates light regulation of seedling development in a phytochrome-dependent manner.O.I.C.G.H.G.
12.399.319.9At4g05190825867ATK5 (ARABIDOPSIS THALIANA KINESIN 5)ATK5 encodes a kinesin protein involved in microtubule spindle morphogenesis. It acts as a minus-end directed motor as well as a plus-end tracking protein (+TIP). Localizes to mitotic spindle midzones and regions rich in growing plus-ends within phragmoplasts.O.I.C.G.H.G.
12.299.344.4At3g51720824335unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBPFAVO.I.C.G.H.G.
12.299.315.5At4g14200827060unknown proteinF:unknown;P:biological_process unknown;C:unknown;MBOFPAO.I.C.G.H.G.
12.199.321.2At2g16270816123unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;MOBFPVAO.I.C.G.H.G.
12.099.3174.3At5g51750835249ATSBT1.3 (ARABIDOPSIS THALIANA SUBTILASE 1.3)F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:apoplast;BPFOAMO.I.C.G.H.G.
12.099.324.0At3g13175820507unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
11.999.315.0At3g58650825034unknown proteinF:molecular_function unknown;P:biological_process unknown;C:plasma membrane;OMBFPVO.I.C.G.H.G.
11.899.383.7At5g22880832352HTB2Encodes a histone 2B (H2B) protein. This protein can be ubiquitinated in planta, and this modification depends on the HUB1 and HUB2 E3 ubiquitin ligases.O.I.C.G.H.G.
11.899.38.9At1g62520842549unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFOBO.I.C.G.H.G.
11.799.324.5At2g34190817980xanthine/uracil permease family proteinF:transmembrane transporter activity;P:transport;C:membrane;BOMPFAVO.I.C.G.H.G.
11.699.344.2At4g28310828946unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMO.I.C.G.H.G.
11.699.338.3At2g21050816640amino acid permease, putativeF:amino acid transmembrane transporter activity, transporter activity;P:amino acid transport, response to nematode;C:membrane;PFMOO.I.C.G.H.G.
11.699.323.9At5g62710836392leucine-rich repeat family protein / protein kinase family proteinF:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVAO.I.C.G.H.G.
11.699.317.9At4g01730826911zinc ion bindingF:zinc ion binding;P:biological_process unknown;C:unknown;MOFPO.I.C.G.H.G.
11.699.313.0At5g63950836516CHR24 (chromatin remodeling 24)F:helicase activity, DNA binding, nucleic acid binding, ATP binding;P:response to cadmium ion;C:unknown;MOBFPVAO.I.C.G.H.G.
11.599.317.4At4g11080826709high mobility group (HMG1/2) family proteinF:transcription factor activity;P:unknown;C:nucleus, chloroplast;MOBFPAVO.I.C.G.H.G.
11.399.378.0At2g25060817044plastocyanin-like domain-containing proteinF:electron carrier activity, copper ion binding;P:unknown;C:anchored to plasma membrane, plasma membrane, anchored to membrane;PO.I.C.G.H.G.
11.399.322.8At1g55690842018SEC14 cytosolic factor family protein / phosphoglyceride transfer family proteinF:transporter activity;P:transport;C:cellular_component unknown;MPFOO.I.C.G.H.G.



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