CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM133923

Assay name Weigel_2-15_CHIP-207-C_Rep3_ATH1

GSE experiment GSE5746: FRI FLC combos

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
53.4 99.8 69.9 At5g59330 836052 lipid binding F:lipid binding;P:lipid transport;C:endomembrane system O.I. C.G. H.G.
31.2 99.7 104.8 At4g37750 829931 ANT (AINTEGUMENTA) ANT is required for control of cell proliferation and encodes a putative transcriptional regulator similar to AP2. Loss of function alleles have reduced fertility, abnormal ovules and abnormal lateral organs. Expressed specifically in the chalaza and in floral organ primordia. O.I. C.G. H.G.
28.3 99.7 14.1 At3g27920 822415 ATMYB0 (MYB DOMAIN PROTEIN 0) Encodes a Myb-like protein that is required for induction of trichome development. O.I. C.G. H.G.
28.2 99.7 41.1 At1g11600 837704 CYP77B1 member of CYP77B O.I. C.G. H.G.
26.6 99.7 269.8 At4g22490 828344 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P O.I. C.G. H.G.
25.0 99.6 33.4 At1g06100 837119 fatty acid desaturase family protein F:oxidoreductase activity;P:lipid metabolic process;C:unknown;BOMFPV O.I. C.G. H.G.
24.6 99.6 19.5 At1g72670 843599 iqd8 (IQ-domain 8) F:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;PMFO O.I. C.G. H.G.
24.4 99.6 22.7 At3g63300 825505 phosphoinositide binding F:phosphoinositide binding;P:signal transduction;C:unknown;OMPBF O.I. C.G. H.G.
23.4 99.6 32.9 At1g29270 839801 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
23.1 99.6 19.3 At1g04160 839246 XIB (MYOSIN XI B) Encodes a member of the type XI myosin protein family involved in root hair elongation. O.I. C.G. H.G.
22.3 99.6 31.6 At5g64110 836532 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:membrane;PFOB O.I. C.G. H.G.
21.8 99.6 339.6 At4g29030 829024 glycine-rich protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BMOPFVA O.I. C.G. H.G.
19.8 99.6 27.9 At5g23420 832408 HMGB6 Encodes HMGB6, a protein belonging to the subgroup of HMGB (high mobility group B) proteins. Localized in the nucleus. Binds to supercoiled DNA in vitro. HMGB6 is phosphorylated by protein kinase CK2alpha within its acidic C-terminal domain. O.I. C.G. H.G.
19.4 99.6 21.7 At5g66940 836828 Dof-type zinc finger domain-containing protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;PO O.I. C.G. H.G.
19.0 99.5 38.9 At4g02850 828160 phenazine biosynthesis PhzC/PhzF family protein F:catalytic activity;P:biosynthetic process;C:endomembrane system;BOMFPA O.I. C.G. H.G.
19.0 99.5 32.1 At1g78430 844179 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAV O.I. C.G. H.G.
18.7 99.5 18.8 At3g29590 822623 AT5MAT At3g29590 (At5MAT) encodes a malonyl-CoA:anthocyanidin 5-O-glucoside-6"-O-malonyltransferase that is coordinately expressed with a epistatic 5-O-anthocyanidin glucosyltransferase (At4g14090). The enzyme is involved in the malonylation of anthocyanins in Arabidopsis. O.I. C.G. H.G.
18.5 99.5 11.6 At4g31805 829309 WRKY family transcription factor F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:unknown;PMOB O.I. C.G. H.G.
18.4 99.5 26.0 At4g00480 827965 myc-related transcription factor (MYC1) MYC-related protein with a basic helix-loop-helix motif at the C-terminus and a region similar to the maize B/R family at the N-terminus O.I. C.G. H.G.
18.3 99.5 57.4 At3g23890 821972 TOPII (TOPOISOMERASE II) Encodes a topoisomerase II that is highly expressed in young seedlings. The protein is localized in the nucleus and gene expression levels are increased in proliferative tissues. O.I. C.G. H.G.
17.9 99.5 96.0 At2g29570 817506 PCNA2 (PROLIFERATING CELL NUCLEAR ANTIGEN 2) Functionally interacts with POLH to repair DNA damaged by UVB damage. O.I. C.G. H.G.
17.9 99.5 93.7 At5g10400 830904 histone H3 F:DNA binding;P:nucleosome assembly;C:nucleus, chloroplast, nucleosome;MFPO O.I. C.G. H.G.
17.5 99.5 73.4 At2g43800 818984 formin homology 2 domain-containing protein / FH2 domain-containing protein F:actin binding;P:cellular component organization, actin cytoskeleton organization;C:plasma membrane;MPFOBVA O.I. C.G. H.G.
17.5 99.5 65.3 At1g57820 842157 VIM1 (VARIANT IN METHYLATION 1) Encodes a 645-amino acid methylcytosine-binding protein with a PHD domain, two RING finger domains, and an SRA domain that is involved in centromere heterochromatinization. This protein functions as an E3 ubiquitin ligase in vitro. The protein has been shown to bind to methylated cytosines of CG, CNG and CNN motifs via its SRA domain but has a preference for the former. It plays a role in the establishment/maintenance of chromatin structure during cell division and is localized in the nucleus. Plants over-expressing VIM1/ORTH2 show an inhibition in root growth and a delay in flowering. Both over-expression of GFP:ORTH2 and loss of ORTH2/VIM1 lead to decreased levels of DNA methylation. GFP:ORTH2 over-expressers also have increased levels of FWA transcripts. O.I. C.G. H.G.
17.1 99.5 28.7 At3g13175 820507 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
17.1 99.5 22.9 At1g74890 843828 ARR15 (RESPONSE REGULATOR 15) Encodes a nuclear response regulator that acts as a negative regulator in cytokinin-mediated signal transduction. Transcript accumulates in leaves and roots in response to cytokinin treatment. O.I. C.G. H.G.
16.7 99.5 11.4 At5g60780 836199 ATNRT2.3 member of High affinity nitrate transporter family O.I. C.G. H.G.
16.4 99.5 106.7 At1g07370 837249 PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN) Encodes putative proliferating cell nuclear antigen involved in cell cycle regulation. O.I. C.G. H.G.
16.4 99.5 47.3 At5g48360 834889 formin homology 2 domain-containing protein / FH2 domain-containing protein F:actin binding;P:cellular component organization, actin cytoskeleton organization;C:unknown;MPOFVBA O.I. C.G. H.G.
16.3 99.5 8.5 At4g03270 828000 CYCD6 F:cyclin-dependent protein kinase activity;P:regulation of cell cycle;C:nucleus;MPOFV O.I. C.G. H.G.
15.9 99.5 23.5 At3g12170 820394 DNAJ heat shock N-terminal domain-containing protein F:unfolded protein binding, heat shock protein binding;P:protein folding;C:cellular_component unknown;BOMFPAV O.I. C.G. H.G.
15.5 99.5 33.4 At1g18370 838418 HIK (HINKEL) Mutant has cytokinesis defects; seedling lethal O.I. C.G. H.G.
15.1 99.4 94.5 At5g22880 832352 HTB2 Encodes a histone 2B (H2B) protein. This protein can be ubiquitinated in planta, and this modification depends on the HUB1 and HUB2 E3 ubiquitin ligases. O.I. C.G. H.G.
15.0 99.4 43.0 At1g66250 842942 glycosyl hydrolase family 17 protein F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to plasma membrane, plasma membrane, anchored to membrane;PFO O.I. C.G. H.G.
14.8 99.4 88.0 At4g33260 829462 CDC20.2 putative cdc20 protein (CDC20.2) O.I. C.G. H.G.
14.7 99.4 16.0 At1g68640 843194 PAN (PERIANTHIA) Encodes bZIP-transcription factor. Mutant plants have extra floral organs. O.I. C.G. H.G.
14.6 99.4 58.7 At4g02060 828153 PRL (PROLIFERA) Member of the minichromosome maintenance complex, involved in DNA replication initiation. Abundant in proliferating and endocycling tissues. Localized in the nucleus during G1, S and G2 phases of the cell cycle, and are released into the cytoplasmic compartment during mitosis. Binds chromatin. O.I. C.G. H.G.
14.6 99.4 23.8 At5g48600 834917 ATSMC3 (ARABIDOPSIS THALIANA STRUCTURAL MAINTENANCE OF CHROMOSOME 3) member of SMC subfamily O.I. C.G. H.G.
14.6 99.4 18.1 At4g39630 830117 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
14.5 99.4 80.9 At5g23940 832459 EMB3009 (embryo defective 3009) F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:embryonic development ending in seed dormancy;C:cellular_component unknown;PFBO O.I. C.G. H.G.
14.3 99.4 114.3 At5g10390 830903 histone H3 F:DNA binding;P:nucleosome assembly;C:nucleus, chloroplast, nucleosome;MFPO O.I. C.G. H.G.
14.1 99.4 12.5 At1g34355 840337 forkhead-associated domain-containing protein / FHA domain-containing protein F:unknown;P:biological_process unknown;C:cellular_component unknown;MBOFPAV O.I. C.G. H.G.
14.0 99.4 50.6 At5g44730 834502 haloacid dehalogenase-like hydrolase family protein F:hydrolase activity, phosphoglycolate phosphatase activity, catalytic activity;P:metabolic process;C:endomembrane system;BMAOFP O.I. C.G. H.G.
14.0 99.4 26.2 At5g62710 836392 leucine-rich repeat family protein / protein kinase family protein F:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA O.I. C.G. H.G.
13.7 99.4 39.9 At3g17680 821035 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMBF O.I. C.G. H.G.
13.6 99.4 38.1 At2g22840 816815 AtGRF1 (GROWTH-REGULATING FACTOR 1) Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Mutants result in smaller leaves indicating the role of the gene in leaf development. Expressed in root, shoot and flower O.I. C.G. H.G.
13.6 99.4 34.9 At5g37010 833671 unknown protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:unknown;MOFBPVA O.I. C.G. H.G.
13.6 99.4 20.3 At3g57830 824952 leucine-rich repeat transmembrane protein kinase, putative F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA O.I. C.G. H.G.
13.3 99.4 32.2 At5g50740 835146 metal ion binding F:metal ion binding;P:metal ion transport;C:cellular_component unknown;POMBFV O.I. C.G. H.G.
13.3 99.4 22.8 At2g29890 817539 VLN1 (VILLIN-LIKE 1) Encodes a ubiquitously expressed villin-like protein, whose mRNA may be alternatively processed. Villin belongs to a superfamily of actin binding proteins called the villin/gelsolin family. Animal villins are involved in actin binding. VLN1 protein co-localizes with actin filaments in several assays. VLN1 binds and bundles F-actin in a calcium-independent manner. It does not nucleate, cap or sever actin filaments and it stabilizes actin filaments, protecting them from ADF-mediated depolymerization. O.I. C.G. H.G.
13.2 99.4 34.8 At2g26180 817158 IQD6 (IQ-domain 6) F:calmodulin binding;P:unknown;C:cellular_component unknown;PMOF O.I. C.G. H.G.
13.2 99.4 9.5 At1g51670 841592 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
13.1 99.4 26.0 At2g34190 817980 xanthine/uracil permease family protein F:transmembrane transporter activity;P:transport;C:membrane;BOMPFAV O.I. C.G. H.G.
13.0 99.4 120.7 At4g38680 830024 GRP2 (GLYCINE RICH PROTEIN 2) Encodes a glycine-rich protein that binds nucleic acids and promotes DNA melting. Its transcript and protein levels are up-regulated in response to cold treatment with protein levels peaking earlier in shoots (~10-14 days) than in roots (~21 days). It is normally expressed in meristematic regions and developing tissues where cell division occurs. RNAi and antisense lines with lower levels of CSP2/GRP2 transcripts flower earlier than wild type plants and have some defects in anther and seed development. O.I. C.G. H.G.
13.0 99.4 22.2 At3g56990 824866 EDA7 (embryo sac development arrest 7) F:molecular_function unknown;P:megagametogenesis;C:nucleolus, CUL4 RING ubiquitin ligase complex;MFOPBV O.I. C.G. H.G.
12.8 99.3 22.7 At3g01410 821319 RNase H domain-containing protein F:ribonuclease H activity, nuclease activity, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;POBAM O.I. C.G. H.G.
12.7 99.3 48.1 At4g39510 830105 CYP96A12 member of CYP96A O.I. C.G. H.G.
12.7 99.3 13.6 At5g63950 836516 CHR24 (chromatin remodeling 24) F:helicase activity, DNA binding, nucleic acid binding, ATP binding;P:response to cadmium ion;C:unknown;MOBFPVA O.I. C.G. H.G.
12.6 99.3 86.7 At3g45930 823736 histone H4 F:DNA binding;P:nucleosome assembly;C:nucleus, nucleosome;MOPFV O.I. C.G. H.G.
12.5 99.3 31.9 At1g28710 839771 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO O.I. C.G. H.G.
12.5 99.3 27.8 At5g08020 830696 RPA70B (RPA70-KDA SUBUNIT B) Encodes a homolog of Replication Protein A. rpa70b mutants are hypersensitive to UV-B radiation and MMS treatments suggesting a role for this protein in DNA damage repair. O.I. C.G. H.G.
12.4 99.3 23.0 At4g02800 828171 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;OMFBPVA O.I. C.G. H.G.
12.4 99.3 18.1 At4g11080 826709 high mobility group (HMG1/2) family protein F:transcription factor activity;P:unknown;C:nucleus, chloroplast;MOBFPAV O.I. C.G. H.G.
12.4 99.3 11.0 At5g60880 836209 unknown protein F:unknown;P:unknown;C:cellular_component unknown;OPMF O.I. C.G. H.G.
12.4 99.3 10.0 At3g52540 824420 OFP18 (OVATE FAMILY PROTEIN 18) F:unknown;P:biological_process unknown;C:chloroplast;MPOF O.I. C.G. H.G.
12.3 99.3 71.5 At5g28640 832968 AN3 (ANGUSTIFOLIA 3) Encodes a protein with similarity to mammalian transcriptional coactivator that is involved in cell proliferation during leaf and flower development. Loss of function mutations have narrow, pointed leaves and narrow floral organs. AN3 interacts with members of the growth regulating factor (GRF) family of transcription factors. O.I. C.G. H.G.
12.3 99.3 40.9 At5g61000 836221 replication protein, putative F:DNA binding, nucleic acid binding;P:DNA replication;C:nucleus;PMOFA O.I. C.G. H.G.
12.3 99.3 27.7 At5g57410 835847 unknown protein F:unknown;P:response to cadmium ion;C:unknown;MOFBPAV O.I. C.G. H.G.
12.3 99.3 26.3 At5g66750 836808 CHR1 (CHROMATIN REMODELING 1) Protein is similar to SWI2/SNF2 chromatin remodeling proteins. DDM1 is appears to act as a chromatin-remodeling ATPase involved in cytosine methylation in CG and non-CG contexts. Involved in gene silencing and maintenance of DNA methylation and histone methylation. Hypomethylation of many genomic regions occurs in ddm1 mutants, and can cause several phenotypic abnormalities, but some loci, such as BONSAI (At1g73177) can be hypermethylated in ddm1 mutants after several generations, leading to different phenotypes. DDM1 might be involved in establishing a heterochromain boundary. A line expressing an RNAi targeted against DDM1 shows some resistance to agrobacterium-mediated root transformation. O.I. C.G. H.G.
12.2 99.3 12.8 At1g55200 841963 protein kinase family protein F:protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA O.I. C.G. H.G.
12.2 99.3 12.7 At1g09450 837468 haspin-related F:protein kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:cellular_component unknown;MFOP O.I. C.G. H.G.
12.1 99.3 31.3 At4g09510 826535 beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative F:catalytic activity, beta-fructofuranosidase activity;P:biological_process unknown;C:cellular_component unknown;OPB O.I. C.G. H.G.
12.0 99.3 67.2 At3g46940 823847 deoxyuridine 5'-triphosphate nucleotidohydrolase family F:hydrolase activity, dUTP diphosphatase activity;P:2'-deoxyribonucleotide metabolic process, dUTP metabolic process;C:cellular_component unknown;BOVMFPA O.I. C.G. H.G.
12.0 99.3 44.8 At4g28310 828946 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POM O.I. C.G. H.G.
12.0 99.3 20.3 At4g25240 828627 SKS1 (SKU5 SIMILAR 1) Encodes GPI-anchored SKU5-like protein. O.I. C.G. H.G.
12.0 99.3 17.5 At2g28620 817411 kinesin motor protein-related F:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex, chloroplast;MOBFPAV O.I. C.G. H.G.
12.0 99.3 10.5 At4g17240 827436 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;POBF O.I. C.G. H.G.
11.9 99.3 50.1 At3g27360 822357 histone H3 F:DNA binding;P:nucleosome assembly;C:nucleus, chloroplast, nucleosome;MFPO O.I. C.G. H.G.
11.9 99.3 29.7 At2g37080 818284 myosin heavy chain-related F:unknown;P:unknown;C:chloroplast;MOBFPAV O.I. C.G. H.G.
11.8 99.3 20.0 At3g06030 819774 ANP3 (ARABIDOPSIS NPK1-RELATED PROTEIN KINASE 3) NPK1-related protein kinase 3 O.I. C.G. H.G.
11.6 99.3 271.7 At2g28790 817428 osmotin-like protein, putative F:molecular_function unknown;P:response to other organism;C:plant-type cell wall;PFMBO O.I. C.G. H.G.
11.6 99.3 47.7 At4g34160 829564 CYCD3 encodes a cyclin D-type protein involved in the switch from cell proliferation to the final stages of differentiation. The gene is transcriptionally regulated by cytokinin and brassinosteroid. Protein interacts with cyclin-dependent kinase inhibitor ICK1. O.I. C.G. H.G.
11.6 99.3 34.2 At1g02690 839517 IMPA-6 (IMPORTIN ALPHA ISOFORM 6) Putative importin alpha isoform. When overexpressed can rescue the impa-4 decreased transformation susceptibility phenotype. O.I. C.G. H.G.
11.6 99.3 33.9 At3g14890 820718 phosphoesterase F:DNA binding, catalytic activity, zinc ion binding;P:unknown;C:unknown;MOFPVBA O.I. C.G. H.G.
11.5 99.3 122.1 At3g54560 824621 HTA11 Encodes HTA11, a histone H2A protein. O.I. C.G. H.G.
11.5 99.3 33.9 At1g50240 841446 - - O.I. C.G. H.G.
11.5 99.3 19.7 At5g07180 830609 ERL2 (ERECTA-LIKE 2) Encodes a receptor-like kinase that, together with ER and ERL1 governs the initial decision of protodermal cells to either divide proliferatively to produce pavement cells or divide asymmetrically to generate stomatal complexes. It is also important for maintaining stomatal stem cell activity and preventing terminal differentiation of the meristemoid into the guard mother cell. When heterozygous in an er/erl1 null background, plants are female sterile due to cell division defect in the integuments. O.I. C.G. H.G.
11.5 99.3 18.3 At3g24495 822040 MSH7 (MUTS HOMOLOG 7) encodes a DNA mismatch repair homolog of human MutS gene, MSH6. There are four MutS genes in Arabidopsis, MSH2, MSH3, MSH6, and MSH7, which all act as heterodimers and bind to 51-mer duplexes. MSH2MSH7 exhibit moderate affinity for a (T/G) substrate and weak binding of (+T), suggesting MSH2MSH7 may be specialized for lesions/base mispairs not tested or for (T/G) mispairs in special contexts. O.I. C.G. H.G.
11.4 99.3 22.4 At3g57780 824947 - F:unknown;P:unknown;C:unknown;OMFBPVA O.I. C.G. H.G.
11.4 99.3 8.6 At5g55820 835676 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVA O.I. C.G. H.G.
11.3 99.3 91.9 At1g07790 837293 HTB1 Encodes a histone 2B (H2B) protein. O.I. C.G. H.G.
11.3 99.3 62.7 At1g11820 837730 catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PO O.I. C.G. H.G.
11.2 99.2 80.3 At3g56370 824804 leucine-rich repeat transmembrane protein kinase, putative F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
11.2 99.2 78.5 At2g33620 817928 DNA-binding family protein / AT-hook protein 1 (AHP1) F:DNA binding;P:unknown;C:cytosol;PBMO O.I. C.G. H.G.
11.2 99.2 54.3 At5g38930 833885 germin-like protein, putative F:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:cell wall;PFO O.I. C.G. H.G.
11.2 99.2 51.6 At1g72040 843535 deoxynucleoside kinase family F:phosphotransferase activity, alcohol group as acceptor, ATP binding;P:nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;C:nucleus;BOMVP O.I. C.G. H.G.
11.1 99.2 14.5 At3g51290 824292 proline-rich family protein F:unknown;P:N-terminal protein myristoylation;C:unknown;MPOBFVA O.I. C.G. H.G.
11.1 99.2 7.9 At5g11320 831003 YUC4 (YUCCA4) Belongs to the YUC gene family. Encodes a predicted flavin monooxygenase YUC4 involved in auxin biosynthesis and plant development. O.I. C.G. H.G.
11.0 99.2 83.9 At3g02640 821289 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PO O.I. C.G. H.G.
11.0 99.2 47.3 At5g65410 836666 HB25 (HOMEOBOX PROTEIN 25) Encodes ZFHD2, a member of the zinc finger homeodomain transcriptional factor family. O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
53.4	99.8	69.9	At5g59330	836052	lipid binding	F:lipid binding;P:lipid transport;C:endomembrane system	O.I.	C.G.	H.G.
31.2	99.7	104.8	At4g37750	829931	ANT (AINTEGUMENTA)	ANT is required for control of cell proliferation and encodes a putative transcriptional regulator similar to AP2. Loss of function alleles have reduced fertility, abnormal ovules and abnormal lateral organs. Expressed specifically in the chalaza and in floral organ primordia.	O.I.	C.G.	H.G.
28.3	99.7	14.1	At3g27920	822415	ATMYB0 (MYB DOMAIN PROTEIN 0)	Encodes a Myb-like protein that is required for induction of trichome development.	O.I.	C.G.	H.G.
28.2	99.7	41.1	At1g11600	837704	CYP77B1	member of CYP77B	O.I.	C.G.	H.G.
26.6	99.7	269.8	At4g22490	828344	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:endomembrane system;P	O.I.	C.G.	H.G.
25.0	99.6	33.4	At1g06100	837119	fatty acid desaturase family protein	F:oxidoreductase activity;P:lipid metabolic process;C:unknown;BOMFPV	O.I.	C.G.	H.G.
24.6	99.6	19.5	At1g72670	843599	iqd8 (IQ-domain 8)	F:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;PMFO	O.I.	C.G.	H.G.
24.4	99.6	22.7	At3g63300	825505	phosphoinositide binding	F:phosphoinositide binding;P:signal transduction;C:unknown;OMPBF	O.I.	C.G.	H.G.
23.4	99.6	32.9	At1g29270	839801	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
23.1	99.6	19.3	At1g04160	839246	XIB (MYOSIN XI B)	Encodes a member of the type XI myosin protein family involved in root hair elongation.	O.I.	C.G.	H.G.
22.3	99.6	31.6	At5g64110	836532	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:membrane;PFOB	O.I.	C.G.	H.G.
21.8	99.6	339.6	At4g29030	829024	glycine-rich protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BMOPFVA	O.I.	C.G.	H.G.
19.8	99.6	27.9	At5g23420	832408	HMGB6	Encodes HMGB6, a protein belonging to the subgroup of HMGB (high mobility group B) proteins. Localized in the nucleus. Binds to supercoiled DNA in vitro. HMGB6 is phosphorylated by protein kinase CK2alpha within its acidic C-terminal domain.	O.I.	C.G.	H.G.
19.4	99.6	21.7	At5g66940	836828	Dof-type zinc finger domain-containing protein	F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;PO	O.I.	C.G.	H.G.
19.0	99.5	38.9	At4g02850	828160	phenazine biosynthesis PhzC/PhzF family protein	F:catalytic activity;P:biosynthetic process;C:endomembrane system;BOMFPA	O.I.	C.G.	H.G.
19.0	99.5	32.1	At1g78430	844179	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAV	O.I.	C.G.	H.G.
18.7	99.5	18.8	At3g29590	822623	AT5MAT	At3g29590 (At5MAT) encodes a malonyl-CoA:anthocyanidin 5-O-glucoside-6"-O-malonyltransferase that is coordinately expressed with a epistatic 5-O-anthocyanidin glucosyltransferase (At4g14090). The enzyme is involved in the malonylation of anthocyanins in Arabidopsis.	O.I.	C.G.	H.G.
18.5	99.5	11.6	At4g31805	829309	WRKY family transcription factor	F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:unknown;PMOB	O.I.	C.G.	H.G.
18.4	99.5	26.0	At4g00480	827965	myc-related transcription factor (MYC1)	MYC-related protein with a basic helix-loop-helix motif at the C-terminus and a region similar to the maize B/R family at the N-terminus	O.I.	C.G.	H.G.
18.3	99.5	57.4	At3g23890	821972	TOPII (TOPOISOMERASE II)	Encodes a topoisomerase II that is highly expressed in young seedlings. The protein is localized in the nucleus and gene expression levels are increased in proliferative tissues.	O.I.	C.G.	H.G.
17.9	99.5	96.0	At2g29570	817506	PCNA2 (PROLIFERATING CELL NUCLEAR ANTIGEN 2)	Functionally interacts with POLH to repair DNA damaged by UVB damage.	O.I.	C.G.	H.G.
17.9	99.5	93.7	At5g10400	830904	histone H3	F:DNA binding;P:nucleosome assembly;C:nucleus, chloroplast, nucleosome;MFPO	O.I.	C.G.	H.G.
17.5	99.5	73.4	At2g43800	818984	formin homology 2 domain-containing protein / FH2 domain-containing protein	F:actin binding;P:cellular component organization, actin cytoskeleton organization;C:plasma membrane;MPFOBVA	O.I.	C.G.	H.G.
17.5	99.5	65.3	At1g57820	842157	VIM1 (VARIANT IN METHYLATION 1)	Encodes a 645-amino acid methylcytosine-binding protein with a PHD domain, two RING finger domains, and an SRA domain that is involved in centromere heterochromatinization. This protein functions as an E3 ubiquitin ligase in vitro. The protein has been shown to bind to methylated cytosines of CG, CNG and CNN motifs via its SRA domain but has a preference for the former. It plays a role in the establishment/maintenance of chromatin structure during cell division and is localized in the nucleus. Plants over-expressing VIM1/ORTH2 show an inhibition in root growth and a delay in flowering. Both over-expression of GFP:ORTH2 and loss of ORTH2/VIM1 lead to decreased levels of DNA methylation. GFP:ORTH2 over-expressers also have increased levels of FWA transcripts.	O.I.	C.G.	H.G.
17.1	99.5	28.7	At3g13175	820507	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
17.1	99.5	22.9	At1g74890	843828	ARR15 (RESPONSE REGULATOR 15)	Encodes a nuclear response regulator that acts as a negative regulator in cytokinin-mediated signal transduction. Transcript accumulates in leaves and roots in response to cytokinin treatment.	O.I.	C.G.	H.G.
16.7	99.5	11.4	At5g60780	836199	ATNRT2.3	member of High affinity nitrate transporter family	O.I.	C.G.	H.G.
16.4	99.5	106.7	At1g07370	837249	PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN)	Encodes putative proliferating cell nuclear antigen involved in cell cycle regulation.	O.I.	C.G.	H.G.
16.4	99.5	47.3	At5g48360	834889	formin homology 2 domain-containing protein / FH2 domain-containing protein	F:actin binding;P:cellular component organization, actin cytoskeleton organization;C:unknown;MPOFVBA	O.I.	C.G.	H.G.
16.3	99.5	8.5	At4g03270	828000	CYCD6	F:cyclin-dependent protein kinase activity;P:regulation of cell cycle;C:nucleus;MPOFV	O.I.	C.G.	H.G.
15.9	99.5	23.5	At3g12170	820394	DNAJ heat shock N-terminal domain-containing protein	F:unfolded protein binding, heat shock protein binding;P:protein folding;C:cellular_component unknown;BOMFPAV	O.I.	C.G.	H.G.
15.5	99.5	33.4	At1g18370	838418	HIK (HINKEL)	Mutant has cytokinesis defects; seedling lethal	O.I.	C.G.	H.G.
15.1	99.4	94.5	At5g22880	832352	HTB2	Encodes a histone 2B (H2B) protein. This protein can be ubiquitinated in planta, and this modification depends on the HUB1 and HUB2 E3 ubiquitin ligases.	O.I.	C.G.	H.G.
15.0	99.4	43.0	At1g66250	842942	glycosyl hydrolase family 17 protein	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to plasma membrane, plasma membrane, anchored to membrane;PFO	O.I.	C.G.	H.G.
14.8	99.4	88.0	At4g33260	829462	CDC20.2	putative cdc20 protein (CDC20.2)	O.I.	C.G.	H.G.
14.7	99.4	16.0	At1g68640	843194	PAN (PERIANTHIA)	Encodes bZIP-transcription factor. Mutant plants have extra floral organs.	O.I.	C.G.	H.G.
14.6	99.4	58.7	At4g02060	828153	PRL (PROLIFERA)	Member of the minichromosome maintenance complex, involved in DNA replication initiation. Abundant in proliferating and endocycling tissues. Localized in the nucleus during G1, S and G2 phases of the cell cycle, and are released into the cytoplasmic compartment during mitosis. Binds chromatin.	O.I.	C.G.	H.G.
14.6	99.4	23.8	At5g48600	834917	ATSMC3 (ARABIDOPSIS THALIANA STRUCTURAL MAINTENANCE OF CHROMOSOME 3)	member of SMC subfamily	O.I.	C.G.	H.G.
14.6	99.4	18.1	At4g39630	830117	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
14.5	99.4	80.9	At5g23940	832459	EMB3009 (embryo defective 3009)	F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:embryonic development ending in seed dormancy;C:cellular_component unknown;PFBO	O.I.	C.G.	H.G.
14.3	99.4	114.3	At5g10390	830903	histone H3	F:DNA binding;P:nucleosome assembly;C:nucleus, chloroplast, nucleosome;MFPO	O.I.	C.G.	H.G.
14.1	99.4	12.5	At1g34355	840337	forkhead-associated domain-containing protein / FHA domain-containing protein	F:unknown;P:biological_process unknown;C:cellular_component unknown;MBOFPAV	O.I.	C.G.	H.G.
14.0	99.4	50.6	At5g44730	834502	haloacid dehalogenase-like hydrolase family protein	F:hydrolase activity, phosphoglycolate phosphatase activity, catalytic activity;P:metabolic process;C:endomembrane system;BMAOFP	O.I.	C.G.	H.G.
14.0	99.4	26.2	At5g62710	836392	leucine-rich repeat family protein / protein kinase family protein	F:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA	O.I.	C.G.	H.G.
13.7	99.4	39.9	At3g17680	821035	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMBF	O.I.	C.G.	H.G.
13.6	99.4	38.1	At2g22840	816815	AtGRF1 (GROWTH-REGULATING FACTOR 1)	Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Mutants result in smaller leaves indicating the role of the gene in leaf development. Expressed in root, shoot and flower	O.I.	C.G.	H.G.
13.6	99.4	34.9	At5g37010	833671	unknown protein	F:molecular_function unknown;P:N-terminal protein myristoylation;C:unknown;MOFBPVA	O.I.	C.G.	H.G.
13.6	99.4	20.3	At3g57830	824952	leucine-rich repeat transmembrane protein kinase, putative	F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA	O.I.	C.G.	H.G.
13.3	99.4	32.2	At5g50740	835146	metal ion binding	F:metal ion binding;P:metal ion transport;C:cellular_component unknown;POMBFV	O.I.	C.G.	H.G.
13.3	99.4	22.8	At2g29890	817539	VLN1 (VILLIN-LIKE 1)	Encodes a ubiquitously expressed villin-like protein, whose mRNA may be alternatively processed. Villin belongs to a superfamily of actin binding proteins called the villin/gelsolin family. Animal villins are involved in actin binding. VLN1 protein co-localizes with actin filaments in several assays. VLN1 binds and bundles F-actin in a calcium-independent manner. It does not nucleate, cap or sever actin filaments and it stabilizes actin filaments, protecting them from ADF-mediated depolymerization.	O.I.	C.G.	H.G.
13.2	99.4	34.8	At2g26180	817158	IQD6 (IQ-domain 6)	F:calmodulin binding;P:unknown;C:cellular_component unknown;PMOF	O.I.	C.G.	H.G.
13.2	99.4	9.5	At1g51670	841592	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
13.1	99.4	26.0	At2g34190	817980	xanthine/uracil permease family protein	F:transmembrane transporter activity;P:transport;C:membrane;BOMPFAV	O.I.	C.G.	H.G.
13.0	99.4	120.7	At4g38680	830024	GRP2 (GLYCINE RICH PROTEIN 2)	Encodes a glycine-rich protein that binds nucleic acids and promotes DNA melting. Its transcript and protein levels are up-regulated in response to cold treatment with protein levels peaking earlier in shoots (~10-14 days) than in roots (~21 days). It is normally expressed in meristematic regions and developing tissues where cell division occurs. RNAi and antisense lines with lower levels of CSP2/GRP2 transcripts flower earlier than wild type plants and have some defects in anther and seed development.	O.I.	C.G.	H.G.
13.0	99.4	22.2	At3g56990	824866	EDA7 (embryo sac development arrest 7)	F:molecular_function unknown;P:megagametogenesis;C:nucleolus, CUL4 RING ubiquitin ligase complex;MFOPBV	O.I.	C.G.	H.G.
12.8	99.3	22.7	At3g01410	821319	RNase H domain-containing protein	F:ribonuclease H activity, nuclease activity, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;POBAM	O.I.	C.G.	H.G.
12.7	99.3	48.1	At4g39510	830105	CYP96A12	member of CYP96A	O.I.	C.G.	H.G.
12.7	99.3	13.6	At5g63950	836516	CHR24 (chromatin remodeling 24)	F:helicase activity, DNA binding, nucleic acid binding, ATP binding;P:response to cadmium ion;C:unknown;MOBFPVA	O.I.	C.G.	H.G.
12.6	99.3	86.7	At3g45930	823736	histone H4	F:DNA binding;P:nucleosome assembly;C:nucleus, nucleosome;MOPFV	O.I.	C.G.	H.G.
12.5	99.3	31.9	At1g28710	839771	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO	O.I.	C.G.	H.G.
12.5	99.3	27.8	At5g08020	830696	RPA70B (RPA70-KDA SUBUNIT B)	Encodes a homolog of Replication Protein A. rpa70b mutants are hypersensitive to UV-B radiation and MMS treatments suggesting a role for this protein in DNA damage repair.	O.I.	C.G.	H.G.
12.4	99.3	23.0	At4g02800	828171	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;OMFBPVA	O.I.	C.G.	H.G.
12.4	99.3	18.1	At4g11080	826709	high mobility group (HMG1/2) family protein	F:transcription factor activity;P:unknown;C:nucleus, chloroplast;MOBFPAV	O.I.	C.G.	H.G.
12.4	99.3	11.0	At5g60880	836209	unknown protein	F:unknown;P:unknown;C:cellular_component unknown;OPMF	O.I.	C.G.	H.G.
12.4	99.3	10.0	At3g52540	824420	OFP18 (OVATE FAMILY PROTEIN 18)	F:unknown;P:biological_process unknown;C:chloroplast;MPOF	O.I.	C.G.	H.G.
12.3	99.3	71.5	At5g28640	832968	AN3 (ANGUSTIFOLIA 3)	Encodes a protein with similarity to mammalian transcriptional coactivator that is involved in cell proliferation during leaf and flower development. Loss of function mutations have narrow, pointed leaves and narrow floral organs. AN3 interacts with members of the growth regulating factor (GRF) family of transcription factors.	O.I.	C.G.	H.G.
12.3	99.3	40.9	At5g61000	836221	replication protein, putative	F:DNA binding, nucleic acid binding;P:DNA replication;C:nucleus;PMOFA	O.I.	C.G.	H.G.
12.3	99.3	27.7	At5g57410	835847	unknown protein	F:unknown;P:response to cadmium ion;C:unknown;MOFBPAV	O.I.	C.G.	H.G.
12.3	99.3	26.3	At5g66750	836808	CHR1 (CHROMATIN REMODELING 1)	Protein is similar to SWI2/SNF2 chromatin remodeling proteins. DDM1 is appears to act as a chromatin-remodeling ATPase involved in cytosine methylation in CG and non-CG contexts. Involved in gene silencing and maintenance of DNA methylation and histone methylation. Hypomethylation of many genomic regions occurs in ddm1 mutants, and can cause several phenotypic abnormalities, but some loci, such as BONSAI (At1g73177) can be hypermethylated in ddm1 mutants after several generations, leading to different phenotypes. DDM1 might be involved in establishing a heterochromain boundary. A line expressing an RNAi targeted against DDM1 shows some resistance to agrobacterium-mediated root transformation.	O.I.	C.G.	H.G.
12.2	99.3	12.8	At1g55200	841963	protein kinase family protein	F:protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA	O.I.	C.G.	H.G.
12.2	99.3	12.7	At1g09450	837468	haspin-related	F:protein kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:cellular_component unknown;MFOP	O.I.	C.G.	H.G.
12.1	99.3	31.3	At4g09510	826535	beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative	F:catalytic activity, beta-fructofuranosidase activity;P:biological_process unknown;C:cellular_component unknown;OPB	O.I.	C.G.	H.G.
12.0	99.3	67.2	At3g46940	823847	deoxyuridine 5'-triphosphate nucleotidohydrolase family	F:hydrolase activity, dUTP diphosphatase activity;P:2'-deoxyribonucleotide metabolic process, dUTP metabolic process;C:cellular_component unknown;BOVMFPA	O.I.	C.G.	H.G.
12.0	99.3	44.8	At4g28310	828946	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POM	O.I.	C.G.	H.G.
12.0	99.3	20.3	At4g25240	828627	SKS1 (SKU5 SIMILAR 1)	Encodes GPI-anchored SKU5-like protein.	O.I.	C.G.	H.G.
12.0	99.3	17.5	At2g28620	817411	kinesin motor protein-related	F:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex, chloroplast;MOBFPAV	O.I.	C.G.	H.G.
12.0	99.3	10.5	At4g17240	827436	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;POBF	O.I.	C.G.	H.G.
11.9	99.3	50.1	At3g27360	822357	histone H3	F:DNA binding;P:nucleosome assembly;C:nucleus, chloroplast, nucleosome;MFPO	O.I.	C.G.	H.G.
11.9	99.3	29.7	At2g37080	818284	myosin heavy chain-related	F:unknown;P:unknown;C:chloroplast;MOBFPAV	O.I.	C.G.	H.G.
11.8	99.3	20.0	At3g06030	819774	ANP3 (ARABIDOPSIS NPK1-RELATED PROTEIN KINASE 3)	NPK1-related protein kinase 3	O.I.	C.G.	H.G.
11.6	99.3	271.7	At2g28790	817428	osmotin-like protein, putative	F:molecular_function unknown;P:response to other organism;C:plant-type cell wall;PFMBO	O.I.	C.G.	H.G.
11.6	99.3	47.7	At4g34160	829564	CYCD3	encodes a cyclin D-type protein involved in the switch from cell proliferation to the final stages of differentiation. The gene is transcriptionally regulated by cytokinin and brassinosteroid. Protein interacts with cyclin-dependent kinase inhibitor ICK1.	O.I.	C.G.	H.G.
11.6	99.3	34.2	At1g02690	839517	IMPA-6 (IMPORTIN ALPHA ISOFORM 6)	Putative importin alpha isoform. When overexpressed can rescue the impa-4 decreased transformation susceptibility phenotype.	O.I.	C.G.	H.G.
11.6	99.3	33.9	At3g14890	820718	phosphoesterase	F:DNA binding, catalytic activity, zinc ion binding;P:unknown;C:unknown;MOFPVBA	O.I.	C.G.	H.G.
11.5	99.3	122.1	At3g54560	824621	HTA11	Encodes HTA11, a histone H2A protein.	O.I.	C.G.	H.G.
11.5	99.3	33.9	At1g50240	841446	-	-	O.I.	C.G.	H.G.
11.5	99.3	19.7	At5g07180	830609	ERL2 (ERECTA-LIKE 2)	Encodes a receptor-like kinase that, together with ER and ERL1 governs the initial decision of protodermal cells to either divide proliferatively to produce pavement cells or divide asymmetrically to generate stomatal complexes. It is also important for maintaining stomatal stem cell activity and preventing terminal differentiation of the meristemoid into the guard mother cell. When heterozygous in an er/erl1 null background, plants are female sterile due to cell division defect in the integuments.	O.I.	C.G.	H.G.
11.5	99.3	18.3	At3g24495	822040	MSH7 (MUTS HOMOLOG 7)	encodes a DNA mismatch repair homolog of human MutS gene, MSH6. There are four MutS genes in Arabidopsis, MSH2, MSH3, MSH6, and MSH7, which all act as heterodimers and bind to 51-mer duplexes. MSH2MSH7 exhibit moderate affinity for a (T/G) substrate and weak binding of (+T), suggesting MSH2MSH7 may be specialized for lesions/base mispairs not tested or for (T/G) mispairs in special contexts.	O.I.	C.G.	H.G.
11.4	99.3	22.4	At3g57780	824947	-	F:unknown;P:unknown;C:unknown;OMFBPVA	O.I.	C.G.	H.G.
11.4	99.3	8.6	At5g55820	835676	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVA	O.I.	C.G.	H.G.
11.3	99.3	91.9	At1g07790	837293	HTB1	Encodes a histone 2B (H2B) protein.	O.I.	C.G.	H.G.
11.3	99.3	62.7	At1g11820	837730	catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PO	O.I.	C.G.	H.G.
11.2	99.2	80.3	At3g56370	824804	leucine-rich repeat transmembrane protein kinase, putative	F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
11.2	99.2	78.5	At2g33620	817928	DNA-binding family protein / AT-hook protein 1 (AHP1)	F:DNA binding;P:unknown;C:cytosol;PBMO	O.I.	C.G.	H.G.
11.2	99.2	54.3	At5g38930	833885	germin-like protein, putative	F:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:cell wall;PFO	O.I.	C.G.	H.G.
11.2	99.2	51.6	At1g72040	843535	deoxynucleoside kinase family	F:phosphotransferase activity, alcohol group as acceptor, ATP binding;P:nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;C:nucleus;BOMVP	O.I.	C.G.	H.G.
11.1	99.2	14.5	At3g51290	824292	proline-rich family protein	F:unknown;P:N-terminal protein myristoylation;C:unknown;MPOBFVA	O.I.	C.G.	H.G.
11.1	99.2	7.9	At5g11320	831003	YUC4 (YUCCA4)	Belongs to the YUC gene family. Encodes a predicted flavin monooxygenase YUC4 involved in auxin biosynthesis and plant development.	O.I.	C.G.	H.G.
11.0	99.2	83.9	At3g02640	821289	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;PO	O.I.	C.G.	H.G.
11.0	99.2	47.3	At5g65410	836666	HB25 (HOMEOBOX PROTEIN 25)	Encodes ZFHD2, a member of the zinc finger homeodomain transcriptional factor family.	O.I.	C.G.	H.G.

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GSM ID	GSM133923
Assay name	Weigel_2-15_CHIP-207-C_Rep3_ATH1
GSE experiment	GSE5746: FRI FLC combos

Microarray experiments to specifically-expressed genes

GSM ID GSM133923 Assay name Weigel_2-15_CHIP-207-C_Rep3_ATH1 GSE experiment GSE5746: FRI FLC combos

GSM ID GSM133923

Assay name Weigel_2-15_CHIP-207-C_Rep3_ATH1

GSE experiment GSE5746: FRI FLC combos