CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM133869

Assay name Cain_1-4_CDB1-Knockout_Rep2_ATH1

GSE experiment GSE5740: Polycomb Binding Protein

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
94.9 99.9 30.4 At2g32830 817844 PHT5 phosphate transporter O.I. C.G. H.G.
92.0 99.9 186.6 At5g01220 831888 SQD2 (sulfoquinovosyldiacylglycerol 2) involved in sulfolipid biosynthesis O.I. C.G. H.G.
77.4 99.9 190.5 At5g48850 834943 ATSDI1 (SULPHUR DEFICIENCY-INDUCED 1) homologous to the wheat sulphate deficiency-induced gene sdi1. Expression in root and leaf is induced by sulfur starvation. Knockout mutants retained higher root and leaf sulfate concentrations, indicating a role in regulation of stored sulfate pools. O.I. C.G. H.G.
64.6 99.8 98.6 At3g49580 824120 LSU1 (RESPONSE TO LOW SULFUR 1) F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
54.3 99.8 126.9 At5g20790 832202 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
53.3 99.8 122.2 At2g44460 819053 BGLU28 (BETA GLUCOSIDASE 28) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:membrane;BOPMFA O.I. C.G. H.G.
41.7 99.8 84.6 At1g66390 842957 MYB90 (MYB DOMAIN PROTEIN 90) production of anthocyanin pigment 2 protein (PAP2) O.I. C.G. H.G.
41.6 99.8 111.2 At2g11810 815657 MGDC MGD3 is the major enzyme for galactolipid metabolism during phosphate starvation. Does not contribute to galactolipid synthesis under P1-sufficient conditions. O.I. C.G. H.G.
39.2 99.8 24.7 At3g43110 823370 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
33.0 99.7 136.2 At3g47420 823896 glycerol-3-phosphate transporter, putative / glycerol 3-phosphate permease, putative F:sugar:hydrogen symporter activity;P:carbohydrate transport;C:unknown;BFOMAP O.I. C.G. H.G.
31.8 99.7 67.8 At4g03960 825706 tyrosine specific protein phosphatase family protein F:phosphatase activity, protein tyrosine phosphatase activity, phosphoprotein phosphatase activity;P:dephosphorylation;C:cellular_component unknown;FPOBM O.I. C.G. H.G.
30.7 99.7 180.4 At1g73010 843632 phosphatase F:phosphatase activity;P:metabolic process;C:cellular_component unknown;MPOBF O.I. C.G. H.G.
26.4 99.7 159.3 At3g02040 821175 SRG3 (senescence-related gene 3) F:phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity;P:glycerol metabolic process, lipid metabolic process;C:unknown;BMOFPAV O.I. C.G. H.G.
26.1 99.7 41.1 At2g36970 818271 UDP-glucoronosyl/UDP-glucosyl transferase family protein F:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:endomembrane system;PMBVOF O.I. C.G. H.G.
25.7 99.7 197.6 At5g20150 832137 SPX1 (SPX DOMAIN GENE 1) F:molecular_function unknown;P:cellular response to phosphate starvation, positive regulation of cellular response to phosphate starvation;C:nucleus;FMPOBA O.I. C.G. H.G.
25.6 99.7 46.0 At1g05000 839348 tyrosine specific protein phosphatase family protein F:phosphatase activity, protein tyrosine phosphatase activity, phosphoprotein phosphatase activity;P:dephosphorylation;C:cellular_component unknown;FPOBM O.I. C.G. H.G.
24.8 99.6 223.8 At3g17790 821047 PAP17 F:phosphatase activity, protein serine/threonine phosphatase activity, acid phosphatase activity;P:response to hydrogen peroxide, cellular phosphate ion homeostasis;C:cell surface;MOBPFA O.I. C.G. H.G.
22.4 99.6 78.5 At5g26220 832691 ChaC-like family protein F:molecular_function unknown;P:response to lead ion, response to cadmium ion;C:cellular_component unknown;BMOFP O.I. C.G. H.G.
22.3 99.6 38.8 At3g05400 819704 sugar transporter, putative F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BMFPOA O.I. C.G. H.G.
22.1 99.6 37.2 At3g59140 825083 ATMRP14 member of MRP subfamily O.I. C.G. H.G.
21.7 99.6 79.9 At5g37990 833778 S-adenosylmethionine-dependent methyltransferase/ methyltransferase F:S-adenosylmethionine-dependent methyltransferase activity, methyltransferase activity;P:biological_process unknown;C:endomembrane system;POBMF O.I. C.G. H.G.
21.4 99.6 56.8 At2g45130 819120 SPX3 (SPX DOMAIN GENE 3) F:molecular_function unknown;P:cellular response to phosphate starvation, positive regulation of cellular response to phosphate starvation;C:cellular_component unknown;FMPO O.I. C.G. H.G.
20.6 99.6 32.9 At1g18870 838468 ICS2 (ISOCHORISMATE SYNTHASE 2) Encodes a protein with isochorismate synthase activity involved in phylloquinone biosynthesis. Mutant studies of this gene's function suggest that its function is redundant with that of ICS1 (AT1G7410). O.I. C.G. H.G.
20.0 99.6 12.0 At5g09470 830806 mitochondrial substrate carrier family protein F:oxidative phosphorylation uncoupler activity, binding;P:transport, mitochondrial transport;C:mitochondrial inner membrane, membrane;MFPOV O.I. C.G. H.G.
19.8 99.6 30.6 At2g30540 817603 glutaredoxin family protein F:electron carrier activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:endomembrane system;PMFBO O.I. C.G. H.G.
19.3 99.6 27.4 At1g19200 838503 senescence-associated protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
19.1 99.6 35.2 At1g08310 837351 esterase/lipase/thioesterase family protein F:catalytic activity;P:biological_process unknown;C:unknown;BPOMFA O.I. C.G. H.G.
18.9 99.5 17.4 At3g44510 823576 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PB O.I. C.G. H.G.
17.9 99.5 195.4 At2g43535 818955 trypsin inhibitor, putative Encodes a defensin-like (DEFL) family protein. O.I. C.G. H.G.
17.6 99.5 25.2 At3g05630 819730 PLDP2 Encodes a member of the PXPH-PLD subfamily of phospholipase D proteins. Regulates vesicle trafficking. Required for auxin transport and distribution and hence auxin responses. This subfamily is novel structurally different from the majority of plant PLDs by having phox homology (PX) and pleckstrin homology (PH) domains. Involved regulating root development in response to nutrient limitation. Plays a major role in phosphatidic acid production during phosphate deprivation. Induced upon Pi starvation in both shoots and roots. Involved in hydrolyzing phosphatidylcholine and phosphatidylethanolamine to produce diacylglycerol for digalactosyldiacylglycerol synthesis and free Pi to sustain other Pi-requiring processes. Does not appear to be involved in root hair patterning. O.I. C.G. H.G.
17.5 99.5 38.8 At3g03530 821243 NPC4 (NONSPECIFIC PHOSPHOLIPASE C4) PHOSPHOESTERASE FAMILY PROTEIN, NPC4 is significantly induced upon phosphate starvation and plays an important role in the supply of inorganic phosphate and diacylglycerol from membrane-phospholipids during phosphate deprivation. O.I. C.G. H.G.
17.3 99.5 37.7 At3g16660 820918 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BPMO O.I. C.G. H.G.
17.2 99.5 62.8 At4g17030 827411 ATEXLB1 (ARABIDOPSIS THALIANA EXPANSIN-LIKE B1) EXPANSIN-RELATED. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) O.I. C.G. H.G.
17.0 99.5 14.3 At3g44520 - - O.I. C.G. H.G.
16.8 99.5 43.8 At3g08860 820034 alanine--glyoxylate aminotransferase, putative / beta-alanine-pyruvate aminotransferase, putative / AGT, putative F:pyridoxal phosphate binding, transaminase activity, catalytic activity, alanine-glyoxylate transaminase activity;P:unknown;C:mitochondrion;BOMFAPV O.I. C.G. H.G.
16.7 99.5 26.8 At2g04460 814986 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
16.7 99.5 24.2 At4g33770 829519 inositol 1,3,4-trisphosphate 5/6-kinase family protein F:inositol or phosphatidylinositol kinase activity, magnesium ion binding, inositol-1,3,4-trisphosphate 5/6-kinase activity, inositol tetrakisphosphate 1-kinase activity, ATP binding;P:inositol trisphosphate metabolic process;C:intracellular;PMO O.I. C.G. H.G.
16.6 99.5 29.8 At3g04530 819609 PPCK2 Encodes a second Arabidopsis phosphoenolpyruvate carboxylase kinase gene product with a different expression pattern from PPCK1. Expression of the gene is upregulated by exposure of the plant to light. O.I. C.G. H.G.
16.5 99.5 77.9 At5g17860 831654 CAX7 (calcium exchanger 7) F:cation:cation antiporter activity, calcium:sodium antiporter activity;P:cation transport;C:endomembrane system, integral to membrane;MBOFPA O.I. C.G. H.G.
16.4 99.5 44.0 At3g03790 821145 ankyrin repeat family protein / regulator of chromosome condensation (RCC1) family protein F:binding;P:biological_process unknown;C:unknown;MOBFPVA O.I. C.G. H.G.
16.2 99.5 83.2 At1g23730 838983 BCA3 (BETA CARBONIC ANHYDRASE 4) F:carbonate dehydratase activity, zinc ion binding;P:carbon utilization;C:cytosol, plasma membrane, membrane;BOPFMA O.I. C.G. H.G.
16.2 99.5 70.3 At5g12050 831078 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFB O.I. C.G. H.G.
16.1 99.5 31.1 At4g00500 827973 lipase class 3 family protein / calmodulin-binding heat-shock protein-related F:triacylglycerol lipase activity, calmodulin binding;P:lipid catabolic process, lipid metabolic process;C:endomembrane system;MPOF O.I. C.G. H.G.
16.1 99.5 18.9 At5g02200 830832 FHL (FAR-RED-ELONGATED HYPOCOTYL1-LIKE) Encodes a small plant-specific protein with both nuclear localization and nuclear export signals that is specifically required, together with FHY1, for the light-regulated nuclear accumulation of phyA. O.I. C.G. H.G.
16.0 99.5 247.0 At1g75280 843865 isoflavone reductase, putative isoflavone reductase, putative, identical to SP:P52577 Isoflavone reductase homolog P3 (EC 1.3.1.-) {Arabidopsis thaliana}; contains Pfam profile PF02716: isoflavone reductase. Involved in response to oxidative stress. O.I. C.G. H.G.
15.8 99.5 115.9 At1g17710 838347 phosphatase F:phosphatase activity;P:metabolic process;C:unknown;MPOBF O.I. C.G. H.G.
15.8 99.5 99.5 At3g56200 824786 amino acid transporter family protein Encodes a putative amino acid transporter. O.I. C.G. H.G.
14.9 99.4 42.3 At4g16780 827384 ATHB-2 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2) Encodes a homeodomain-leucine zipper protein that is rapidly and strongly induced by changes in the ratio of red to far-red light. It is also involved in cell expansion and cell proliferation and in the response to auxin. O.I. C.G. H.G.
14.4 99.4 136.9 At5g43150 834332 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P O.I. C.G. H.G.
14.4 99.4 44.1 At1g13750 837935 calcineurin-like phosphoesterase family protein F:hydrolase activity, protein serine/threonine phosphatase activity, metal ion binding, acid phosphatase activity;P:biological_process unknown;C:endomembrane system;PBOMF O.I. C.G. H.G.
13.8 99.4 111.2 At1g17745 838352 PGDH (3-PHOSPHOGLYCERATE DEHYDROGENASE) encodes a 3-Phosphoglycerate dehydrogenase O.I. C.G. H.G.
13.8 99.4 55.0 At5g24380 832509 YSL2 (YELLOW STRIPE LIKE 2) closest Arabidopsis homolog of Zea maize metal-phytosiderophore/metal-nicotianamine transporter ZmYS1 O.I. C.G. H.G.
13.7 99.4 108.5 At2g27190 817261 PAP12 (PURPLE ACID PHOSPHATASE 12) secreted purple acid phosphatase precursor O.I. C.G. H.G.
13.6 99.4 194.6 At4g33030 829440 SQD1 involved in sulfolipid biosynthesis O.I. C.G. H.G.
13.4 99.4 23.6 At1g68740 843205 EXS family protein / ERD1/XPR1/SYG1 family protein Encodes PHO1;H1, a member of the PHO1 family. Involved in inorganic phosphate (Pi) transport and homeostasis. Complements pho1 mutation. O.I. C.G. H.G.
12.9 99.3 13.9 At5g25120 832583 CYP71B11 putative cytochrome P450 O.I. C.G. H.G.
12.4 99.3 63.6 At4g19810 827725 glycosyl hydrolase family 18 protein F:cation binding, chitinase activity, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:cell wall;BMFOVPA O.I. C.G. H.G.
11.9 99.3 47.7 At4g24120 828512 YSL1 (YELLOW STRIPE LIKE 1) Member of a small family of oligopeptide transporters similar to the yellow stripe locus of maize (ZmYS1). O.I. C.G. H.G.
11.8 99.3 129.0 At5g24660 832538 LSU2 (RESPONSE TO LOW SULFUR 2) F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM O.I. C.G. H.G.
11.7 99.3 31.3 At1g23140 838922 C2 domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MPFO O.I. C.G. H.G.
11.6 99.3 59.7 At5g53420 835423 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
11.4 99.3 64.9 At1g36370 840543 SHM7 (serine hydroxymethyltransferase 7) Encodes a putative serine hydroxymethyltransferase. O.I. C.G. H.G.
11.4 99.3 21.9 At1g72890 843620 disease resistance protein (TIR-NBS class), putative F:transmembrane receptor activity, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PBMO O.I. C.G. H.G.
11.3 99.3 62.9 At3g20810 821629 transcription factor jumonji (jmjC) domain-containing protein F:transcription factor activity;P:biological_process unknown;C:cellular_component unknown;MBOFPV O.I. C.G. H.G.
11.3 99.3 45.5 At2g34490 818012 CYP710A2 (cytochrome P450, family 710, subfamily A, polypeptide 2) Encodes a protein with C22-sterol desaturase activity. The enzyme was shown to catalyze the conversion of both 24-epi-campesterol and β-sitosterol to brassicasterol and stigmasterol, respectively, in the presence of NADPH. O.I. C.G. H.G.
11.2 99.2 172.2 At4g04830 825820 methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein F:peptide-methionine-(S)-S-oxide reductase activity;P:biological_process unknown;C:cellular_component unknown;OBMPFAV O.I. C.G. H.G.
10.9 99.2 62.5 At2g26660 817207 SPX2 (SPX DOMAIN GENE 2) F:molecular_function unknown;P:cellular response to phosphate starvation;C:nucleus;FMPOB O.I. C.G. H.G.
10.6 99.2 82.4 At5g48000 834851 CYP708A2 Encodes a member of the CYP708A family of cytochrome P450 enzymes. THAH appears to add a hydroxyl group to the triterpene thalianol. thah1 mutants have an elevated accumulation of thalianol. thah1-1 mutants have longer roots than wild type plants. Thalian-diol and desaturated thalian-diol are lost from the root extracts of thah1-1 mutants. Overexpression of the sequence from At5g48000.1 rescues the thah1-1 mutant phenotype (Field 2008); it is unknown whether the shorter sequences associated with other gene models would provide functional complementation. O.I. C.G. H.G.
10.6 99.2 25.6 At4g31240 829251 - F:unknown;P:cell redox homeostasis;C:cellular_component unknown;OMBP O.I. C.G. H.G.
10.5 99.2 233.4 At4g35750 829728 Rho-GTPase-activating protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPO O.I. C.G. H.G.
10.5 99.2 114.7 At4g04610 825793 APR1 (APS REDUCTASE 1) Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. This protein also belongs to the adenosine 5'-phosphosulfate reductase-like (APRL) group. O.I. C.G. H.G.
10.5 99.2 65.3 At4g21470 828232 ATFMN/FHY (riboflavin kinase/FMN hydrolase) Bifunctional enzyme that catalyzes hydrolysis of FMN to riboflavin, and phosphorylation of riboflavin to FMN. O.I. C.G. H.G.
10.3 99.2 21.0 At1g67600 843081 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BOP O.I. C.G. H.G.
10.2 99.2 74.6 At5g48010 834852 THAS1 (THALIANOL SYNTHASE 1) Encodes an oxidosqualene cyclase involved in the biosynthesis of thalianol, a tricyclic triterpenoid of unknown function. Overexpression of THAS leads to dwarfing in the aerial tissues of Arabidopsis plants, but increases their root length. THAS is part of a small operon-like cluster of genes (with At5g48000 (THAH) and At5g47990 (THAD)) involved in thalianol metabolism. O.I. C.G. H.G.
10.2 99.2 50.2 At4g26620 828769 sucrase-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;FBPOA O.I. C.G. H.G.
9.9 99.1 9.8 At1g53620 841797 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MBPOFV O.I. C.G. H.G.
9.7 99.1 17.3 At3g20660 821613 AtOCT4 (Arabidopsis thaliana ORGANIC CATION/CARNITINE TRANSPORTER4) F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport;C:chloroplast thylakoid membrane, membrane;BMFPOA O.I. C.G. H.G.
9.7 99.1 9.5 At4g20820 827830 FAD-binding domain-containing protein F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:unknown;FBPOAM O.I. C.G. H.G.
9.6 99.1 76.5 At1g64590 842767 short-chain dehydrogenase/reductase (SDR) family protein F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPA O.I. C.G. H.G.
9.5 99.1 44.6 At3g15980 820842 coatomer protein complex, subunit beta 2 (beta prime), putative F:protein binding, structural molecule activity;P:intracellular protein transport, vesicle-mediated transport;C:membrane coat, COPI vesicle coat;MFOBPA O.I. C.G. H.G.
9.4 99.1 56.0 At1g04770 839418 male sterility MS5 family protein F:binding;P:biological_process unknown;C:unknown;POB O.I. C.G. H.G.
9.3 99.1 45.8 At2g33050 817867 AtRLP26 (Receptor Like Protein 26) F:protein binding, kinase activity;P:signal transduction, defense response;C:endomembrane system;PMOBFAV O.I. C.G. H.G.
9.3 99.1 28.1 At1g48370 841257 YSL8 (YELLOW STRIPE LIKE 8) Arabidopsis thaliana metal-nicotianamine transporter YSL4 O.I. C.G. H.G.
9.3 99.1 9.7 At4g25760 828681 AtGDU2 (Arabidopsis thaliana GLUTAMINE DUMPER 2) F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
9.2 99.1 13.8 At1g77990 844134 AST56 cDNA encoding a sulfate transporter. O.I. C.G. H.G.
9.2 99.1 7.9 At5g37970 833776 S-adenosyl-L-methionine:carboxyl methyltransferase family protein F:S-adenosylmethionine-dependent methyltransferase activity, methyltransferase activity;P:biological_process unknown;C:unknown;POBMF O.I. C.G. H.G.
9.0 99.1 39.9 At5g61520 836273 hexose transporter, putative F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BFMPOA O.I. C.G. H.G.
8.9 99.0 47.7 At2g17850 816295 - F:molecular_function unknown;P:aging;C:endomembrane system;BOPAMF O.I. C.G. H.G.
8.8 99.0 34.4 At2g29660 817516 zinc finger (C2H2 type) family protein F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:anchored to membrane;PFO O.I. C.G. H.G.
8.7 99.0 87.6 At1g75270 843864 DHAR2 (DEHYDROASCORBATE REDUCTASE 2) F:glutathione binding, glutathione dehydrogenase (ascorbate) activity;P:unknown;C:plasma membrane;BMOPF O.I. C.G. H.G.
8.7 99.0 14.7 At4g17970 827522 unknown protein F:unknown;P:biological_process unknown;C:cellular_component unknown;BPOF O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
94.9	99.9	30.4	At2g32830	817844	PHT5	phosphate transporter	O.I.	C.G.	H.G.
92.0	99.9	186.6	At5g01220	831888	SQD2 (sulfoquinovosyldiacylglycerol 2)	involved in sulfolipid biosynthesis	O.I.	C.G.	H.G.
77.4	99.9	190.5	At5g48850	834943	ATSDI1 (SULPHUR DEFICIENCY-INDUCED 1)	homologous to the wheat sulphate deficiency-induced gene sdi1. Expression in root and leaf is induced by sulfur starvation. Knockout mutants retained higher root and leaf sulfate concentrations, indicating a role in regulation of stored sulfate pools.	O.I.	C.G.	H.G.
64.6	99.8	98.6	At3g49580	824120	LSU1 (RESPONSE TO LOW SULFUR 1)	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
54.3	99.8	126.9	At5g20790	832202	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
53.3	99.8	122.2	At2g44460	819053	BGLU28 (BETA GLUCOSIDASE 28)	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:membrane;BOPMFA	O.I.	C.G.	H.G.
41.7	99.8	84.6	At1g66390	842957	MYB90 (MYB DOMAIN PROTEIN 90)	production of anthocyanin pigment 2 protein (PAP2)	O.I.	C.G.	H.G.
41.6	99.8	111.2	At2g11810	815657	MGDC	MGD3 is the major enzyme for galactolipid metabolism during phosphate starvation. Does not contribute to galactolipid synthesis under P1-sufficient conditions.	O.I.	C.G.	H.G.
39.2	99.8	24.7	At3g43110	823370	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
33.0	99.7	136.2	At3g47420	823896	glycerol-3-phosphate transporter, putative / glycerol 3-phosphate permease, putative	F:sugar:hydrogen symporter activity;P:carbohydrate transport;C:unknown;BFOMAP	O.I.	C.G.	H.G.
31.8	99.7	67.8	At4g03960	825706	tyrosine specific protein phosphatase family protein	F:phosphatase activity, protein tyrosine phosphatase activity, phosphoprotein phosphatase activity;P:dephosphorylation;C:cellular_component unknown;FPOBM	O.I.	C.G.	H.G.
30.7	99.7	180.4	At1g73010	843632	phosphatase	F:phosphatase activity;P:metabolic process;C:cellular_component unknown;MPOBF	O.I.	C.G.	H.G.
26.4	99.7	159.3	At3g02040	821175	SRG3 (senescence-related gene 3)	F:phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity;P:glycerol metabolic process, lipid metabolic process;C:unknown;BMOFPAV	O.I.	C.G.	H.G.
26.1	99.7	41.1	At2g36970	818271	UDP-glucoronosyl/UDP-glucosyl transferase family protein	F:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:endomembrane system;PMBVOF	O.I.	C.G.	H.G.
25.7	99.7	197.6	At5g20150	832137	SPX1 (SPX DOMAIN GENE 1)	F:molecular_function unknown;P:cellular response to phosphate starvation, positive regulation of cellular response to phosphate starvation;C:nucleus;FMPOBA	O.I.	C.G.	H.G.
25.6	99.7	46.0	At1g05000	839348	tyrosine specific protein phosphatase family protein	F:phosphatase activity, protein tyrosine phosphatase activity, phosphoprotein phosphatase activity;P:dephosphorylation;C:cellular_component unknown;FPOBM	O.I.	C.G.	H.G.
24.8	99.6	223.8	At3g17790	821047	PAP17	F:phosphatase activity, protein serine/threonine phosphatase activity, acid phosphatase activity;P:response to hydrogen peroxide, cellular phosphate ion homeostasis;C:cell surface;MOBPFA	O.I.	C.G.	H.G.
22.4	99.6	78.5	At5g26220	832691	ChaC-like family protein	F:molecular_function unknown;P:response to lead ion, response to cadmium ion;C:cellular_component unknown;BMOFP	O.I.	C.G.	H.G.
22.3	99.6	38.8	At3g05400	819704	sugar transporter, putative	F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BMFPOA	O.I.	C.G.	H.G.
22.1	99.6	37.2	At3g59140	825083	ATMRP14	member of MRP subfamily	O.I.	C.G.	H.G.
21.7	99.6	79.9	At5g37990	833778	S-adenosylmethionine-dependent methyltransferase/ methyltransferase	F:S-adenosylmethionine-dependent methyltransferase activity, methyltransferase activity;P:biological_process unknown;C:endomembrane system;POBMF	O.I.	C.G.	H.G.
21.4	99.6	56.8	At2g45130	819120	SPX3 (SPX DOMAIN GENE 3)	F:molecular_function unknown;P:cellular response to phosphate starvation, positive regulation of cellular response to phosphate starvation;C:cellular_component unknown;FMPO	O.I.	C.G.	H.G.
20.6	99.6	32.9	At1g18870	838468	ICS2 (ISOCHORISMATE SYNTHASE 2)	Encodes a protein with isochorismate synthase activity involved in phylloquinone biosynthesis. Mutant studies of this gene's function suggest that its function is redundant with that of ICS1 (AT1G7410).	O.I.	C.G.	H.G.
20.0	99.6	12.0	At5g09470	830806	mitochondrial substrate carrier family protein	F:oxidative phosphorylation uncoupler activity, binding;P:transport, mitochondrial transport;C:mitochondrial inner membrane, membrane;MFPOV	O.I.	C.G.	H.G.
19.8	99.6	30.6	At2g30540	817603	glutaredoxin family protein	F:electron carrier activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:endomembrane system;PMFBO	O.I.	C.G.	H.G.
19.3	99.6	27.4	At1g19200	838503	senescence-associated protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
19.1	99.6	35.2	At1g08310	837351	esterase/lipase/thioesterase family protein	F:catalytic activity;P:biological_process unknown;C:unknown;BPOMFA	O.I.	C.G.	H.G.
18.9	99.5	17.4	At3g44510	823576	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PB	O.I.	C.G.	H.G.
17.9	99.5	195.4	At2g43535	818955	trypsin inhibitor, putative	Encodes a defensin-like (DEFL) family protein.	O.I.	C.G.	H.G.
17.6	99.5	25.2	At3g05630	819730	PLDP2	Encodes a member of the PXPH-PLD subfamily of phospholipase D proteins. Regulates vesicle trafficking. Required for auxin transport and distribution and hence auxin responses. This subfamily is novel structurally different from the majority of plant PLDs by having phox homology (PX) and pleckstrin homology (PH) domains. Involved regulating root development in response to nutrient limitation. Plays a major role in phosphatidic acid production during phosphate deprivation. Induced upon Pi starvation in both shoots and roots. Involved in hydrolyzing phosphatidylcholine and phosphatidylethanolamine to produce diacylglycerol for digalactosyldiacylglycerol synthesis and free Pi to sustain other Pi-requiring processes. Does not appear to be involved in root hair patterning.	O.I.	C.G.	H.G.
17.5	99.5	38.8	At3g03530	821243	NPC4 (NONSPECIFIC PHOSPHOLIPASE C4)	PHOSPHOESTERASE FAMILY PROTEIN, NPC4 is significantly induced upon phosphate starvation and plays an important role in the supply of inorganic phosphate and diacylglycerol from membrane-phospholipids during phosphate deprivation.	O.I.	C.G.	H.G.
17.3	99.5	37.7	At3g16660	820918	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BPMO	O.I.	C.G.	H.G.
17.2	99.5	62.8	At4g17030	827411	ATEXLB1 (ARABIDOPSIS THALIANA EXPANSIN-LIKE B1)	EXPANSIN-RELATED. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)	O.I.	C.G.	H.G.
17.0	99.5	14.3	At3g44520		-	-	O.I.	C.G.	H.G.
16.8	99.5	43.8	At3g08860	820034	alanine--glyoxylate aminotransferase, putative / beta-alanine-pyruvate aminotransferase, putative / AGT, putative	F:pyridoxal phosphate binding, transaminase activity, catalytic activity, alanine-glyoxylate transaminase activity;P:unknown;C:mitochondrion;BOMFAPV	O.I.	C.G.	H.G.
16.7	99.5	26.8	At2g04460	814986	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
16.7	99.5	24.2	At4g33770	829519	inositol 1,3,4-trisphosphate 5/6-kinase family protein	F:inositol or phosphatidylinositol kinase activity, magnesium ion binding, inositol-1,3,4-trisphosphate 5/6-kinase activity, inositol tetrakisphosphate 1-kinase activity, ATP binding;P:inositol trisphosphate metabolic process;C:intracellular;PMO	O.I.	C.G.	H.G.
16.6	99.5	29.8	At3g04530	819609	PPCK2	Encodes a second Arabidopsis phosphoenolpyruvate carboxylase kinase gene product with a different expression pattern from PPCK1. Expression of the gene is upregulated by exposure of the plant to light.	O.I.	C.G.	H.G.
16.5	99.5	77.9	At5g17860	831654	CAX7 (calcium exchanger 7)	F:cation:cation antiporter activity, calcium:sodium antiporter activity;P:cation transport;C:endomembrane system, integral to membrane;MBOFPA	O.I.	C.G.	H.G.
16.4	99.5	44.0	At3g03790	821145	ankyrin repeat family protein / regulator of chromosome condensation (RCC1) family protein	F:binding;P:biological_process unknown;C:unknown;MOBFPVA	O.I.	C.G.	H.G.
16.2	99.5	83.2	At1g23730	838983	BCA3 (BETA CARBONIC ANHYDRASE 4)	F:carbonate dehydratase activity, zinc ion binding;P:carbon utilization;C:cytosol, plasma membrane, membrane;BOPFMA	O.I.	C.G.	H.G.
16.2	99.5	70.3	At5g12050	831078	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFB	O.I.	C.G.	H.G.
16.1	99.5	31.1	At4g00500	827973	lipase class 3 family protein / calmodulin-binding heat-shock protein-related	F:triacylglycerol lipase activity, calmodulin binding;P:lipid catabolic process, lipid metabolic process;C:endomembrane system;MPOF	O.I.	C.G.	H.G.
16.1	99.5	18.9	At5g02200	830832	FHL (FAR-RED-ELONGATED HYPOCOTYL1-LIKE)	Encodes a small plant-specific protein with both nuclear localization and nuclear export signals that is specifically required, together with FHY1, for the light-regulated nuclear accumulation of phyA.	O.I.	C.G.	H.G.
16.0	99.5	247.0	At1g75280	843865	isoflavone reductase, putative	isoflavone reductase, putative, identical to SP:P52577 Isoflavone reductase homolog P3 (EC 1.3.1.-) {Arabidopsis thaliana}; contains Pfam profile PF02716: isoflavone reductase. Involved in response to oxidative stress.	O.I.	C.G.	H.G.
15.8	99.5	115.9	At1g17710	838347	phosphatase	F:phosphatase activity;P:metabolic process;C:unknown;MPOBF	O.I.	C.G.	H.G.
15.8	99.5	99.5	At3g56200	824786	amino acid transporter family protein	Encodes a putative amino acid transporter.	O.I.	C.G.	H.G.
14.9	99.4	42.3	At4g16780	827384	ATHB-2 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2)	Encodes a homeodomain-leucine zipper protein that is rapidly and strongly induced by changes in the ratio of red to far-red light. It is also involved in cell expansion and cell proliferation and in the response to auxin.	O.I.	C.G.	H.G.
14.4	99.4	136.9	At5g43150	834332	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P	O.I.	C.G.	H.G.
14.4	99.4	44.1	At1g13750	837935	calcineurin-like phosphoesterase family protein	F:hydrolase activity, protein serine/threonine phosphatase activity, metal ion binding, acid phosphatase activity;P:biological_process unknown;C:endomembrane system;PBOMF	O.I.	C.G.	H.G.
13.8	99.4	111.2	At1g17745	838352	PGDH (3-PHOSPHOGLYCERATE DEHYDROGENASE)	encodes a 3-Phosphoglycerate dehydrogenase	O.I.	C.G.	H.G.
13.8	99.4	55.0	At5g24380	832509	YSL2 (YELLOW STRIPE LIKE 2)	closest Arabidopsis homolog of Zea maize metal-phytosiderophore/metal-nicotianamine transporter ZmYS1	O.I.	C.G.	H.G.
13.7	99.4	108.5	At2g27190	817261	PAP12 (PURPLE ACID PHOSPHATASE 12)	secreted purple acid phosphatase precursor	O.I.	C.G.	H.G.
13.6	99.4	194.6	At4g33030	829440	SQD1	involved in sulfolipid biosynthesis	O.I.	C.G.	H.G.
13.4	99.4	23.6	At1g68740	843205	EXS family protein / ERD1/XPR1/SYG1 family protein	Encodes PHO1;H1, a member of the PHO1 family. Involved in inorganic phosphate (Pi) transport and homeostasis. Complements pho1 mutation.	O.I.	C.G.	H.G.
12.9	99.3	13.9	At5g25120	832583	CYP71B11	putative cytochrome P450	O.I.	C.G.	H.G.
12.4	99.3	63.6	At4g19810	827725	glycosyl hydrolase family 18 protein	F:cation binding, chitinase activity, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:cell wall;BMFOVPA	O.I.	C.G.	H.G.
11.9	99.3	47.7	At4g24120	828512	YSL1 (YELLOW STRIPE LIKE 1)	Member of a small family of oligopeptide transporters similar to the yellow stripe locus of maize (ZmYS1).	O.I.	C.G.	H.G.
11.8	99.3	129.0	At5g24660	832538	LSU2 (RESPONSE TO LOW SULFUR 2)	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM	O.I.	C.G.	H.G.
11.7	99.3	31.3	At1g23140	838922	C2 domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MPFO	O.I.	C.G.	H.G.
11.6	99.3	59.7	At5g53420	835423	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
11.4	99.3	64.9	At1g36370	840543	SHM7 (serine hydroxymethyltransferase 7)	Encodes a putative serine hydroxymethyltransferase.	O.I.	C.G.	H.G.
11.4	99.3	21.9	At1g72890	843620	disease resistance protein (TIR-NBS class), putative	F:transmembrane receptor activity, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PBMO	O.I.	C.G.	H.G.
11.3	99.3	62.9	At3g20810	821629	transcription factor jumonji (jmjC) domain-containing protein	F:transcription factor activity;P:biological_process unknown;C:cellular_component unknown;MBOFPV	O.I.	C.G.	H.G.
11.3	99.3	45.5	At2g34490	818012	CYP710A2 (cytochrome P450, family 710, subfamily A, polypeptide 2)	Encodes a protein with C22-sterol desaturase activity. The enzyme was shown to catalyze the conversion of both 24-epi-campesterol and β-sitosterol to brassicasterol and stigmasterol, respectively, in the presence of NADPH.	O.I.	C.G.	H.G.
11.2	99.2	172.2	At4g04830	825820	methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein	F:peptide-methionine-(S)-S-oxide reductase activity;P:biological_process unknown;C:cellular_component unknown;OBMPFAV	O.I.	C.G.	H.G.
10.9	99.2	62.5	At2g26660	817207	SPX2 (SPX DOMAIN GENE 2)	F:molecular_function unknown;P:cellular response to phosphate starvation;C:nucleus;FMPOB	O.I.	C.G.	H.G.
10.6	99.2	82.4	At5g48000	834851	CYP708A2	Encodes a member of the CYP708A family of cytochrome P450 enzymes. THAH appears to add a hydroxyl group to the triterpene thalianol. thah1 mutants have an elevated accumulation of thalianol. thah1-1 mutants have longer roots than wild type plants. Thalian-diol and desaturated thalian-diol are lost from the root extracts of thah1-1 mutants. Overexpression of the sequence from At5g48000.1 rescues the thah1-1 mutant phenotype (Field 2008); it is unknown whether the shorter sequences associated with other gene models would provide functional complementation.	O.I.	C.G.	H.G.
10.6	99.2	25.6	At4g31240	829251	-	F:unknown;P:cell redox homeostasis;C:cellular_component unknown;OMBP	O.I.	C.G.	H.G.
10.5	99.2	233.4	At4g35750	829728	Rho-GTPase-activating protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPO	O.I.	C.G.	H.G.
10.5	99.2	114.7	At4g04610	825793	APR1 (APS REDUCTASE 1)	Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. This protein also belongs to the adenosine 5'-phosphosulfate reductase-like (APRL) group.	O.I.	C.G.	H.G.
10.5	99.2	65.3	At4g21470	828232	ATFMN/FHY (riboflavin kinase/FMN hydrolase)	Bifunctional enzyme that catalyzes hydrolysis of FMN to riboflavin, and phosphorylation of riboflavin to FMN.	O.I.	C.G.	H.G.
10.3	99.2	21.0	At1g67600	843081	-	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BOP	O.I.	C.G.	H.G.
10.2	99.2	74.6	At5g48010	834852	THAS1 (THALIANOL SYNTHASE 1)	Encodes an oxidosqualene cyclase involved in the biosynthesis of thalianol, a tricyclic triterpenoid of unknown function. Overexpression of THAS leads to dwarfing in the aerial tissues of Arabidopsis plants, but increases their root length. THAS is part of a small operon-like cluster of genes (with At5g48000 (THAH) and At5g47990 (THAD)) involved in thalianol metabolism.	O.I.	C.G.	H.G.
10.2	99.2	50.2	At4g26620	828769	sucrase-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;FBPOA	O.I.	C.G.	H.G.
9.9	99.1	9.8	At1g53620	841797	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MBPOFV	O.I.	C.G.	H.G.
9.7	99.1	17.3	At3g20660	821613	AtOCT4 (Arabidopsis thaliana ORGANIC CATION/CARNITINE TRANSPORTER4)	F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport;C:chloroplast thylakoid membrane, membrane;BMFPOA	O.I.	C.G.	H.G.
9.7	99.1	9.5	At4g20820	827830	FAD-binding domain-containing protein	F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:unknown;FBPOAM	O.I.	C.G.	H.G.
9.6	99.1	76.5	At1g64590	842767	short-chain dehydrogenase/reductase (SDR) family protein	F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPA	O.I.	C.G.	H.G.
9.5	99.1	44.6	At3g15980	820842	coatomer protein complex, subunit beta 2 (beta prime), putative	F:protein binding, structural molecule activity;P:intracellular protein transport, vesicle-mediated transport;C:membrane coat, COPI vesicle coat;MFOBPA	O.I.	C.G.	H.G.
9.4	99.1	56.0	At1g04770	839418	male sterility MS5 family protein	F:binding;P:biological_process unknown;C:unknown;POB	O.I.	C.G.	H.G.
9.3	99.1	45.8	At2g33050	817867	AtRLP26 (Receptor Like Protein 26)	F:protein binding, kinase activity;P:signal transduction, defense response;C:endomembrane system;PMOBFAV	O.I.	C.G.	H.G.
9.3	99.1	28.1	At1g48370	841257	YSL8 (YELLOW STRIPE LIKE 8)	Arabidopsis thaliana metal-nicotianamine transporter YSL4	O.I.	C.G.	H.G.
9.3	99.1	9.7	At4g25760	828681	AtGDU2 (Arabidopsis thaliana GLUTAMINE DUMPER 2)	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
9.2	99.1	13.8	At1g77990	844134	AST56	cDNA encoding a sulfate transporter.	O.I.	C.G.	H.G.
9.2	99.1	7.9	At5g37970	833776	S-adenosyl-L-methionine:carboxyl methyltransferase family protein	F:S-adenosylmethionine-dependent methyltransferase activity, methyltransferase activity;P:biological_process unknown;C:unknown;POBMF	O.I.	C.G.	H.G.
9.0	99.1	39.9	At5g61520	836273	hexose transporter, putative	F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BFMPOA	O.I.	C.G.	H.G.
8.9	99.0	47.7	At2g17850	816295	-	F:molecular_function unknown;P:aging;C:endomembrane system;BOPAMF	O.I.	C.G.	H.G.
8.8	99.0	34.4	At2g29660	817516	zinc finger (C2H2 type) family protein	F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:anchored to membrane;PFO	O.I.	C.G.	H.G.
8.7	99.0	87.6	At1g75270	843864	DHAR2 (DEHYDROASCORBATE REDUCTASE 2)	F:glutathione binding, glutathione dehydrogenase (ascorbate) activity;P:unknown;C:plasma membrane;BMOPF	O.I.	C.G.	H.G.
8.7	99.0	14.7	At4g17970	827522	unknown protein	F:unknown;P:biological_process unknown;C:cellular_component unknown;BPOF	O.I.	C.G.	H.G.

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GSM ID	GSM133869
Assay name	Cain_1-4_CDB1-Knockout_Rep2_ATH1
GSE experiment	GSE5740: Polycomb Binding Protein

Microarray experiments to specifically-expressed genes

GSM ID GSM133869 Assay name Cain_1-4_CDB1-Knockout_Rep2_ATH1 GSE experiment GSE5740: Polycomb Binding Protein

GSM ID GSM133869

Assay name Cain_1-4_CDB1-Knockout_Rep2_ATH1

GSE experiment GSE5740: Polycomb Binding Protein