CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM133833

Assay name Walters_A-12-Kruger-MH3_REP3

GSE experiment GSE5737: Carbohydrate- and redox-regulation of gene expression in a TPT mutant

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
65.8 99.8 51.4 At5g55570 835651 unknown protein F:unknown;P:unknown;C:chloroplast;PM O.I. C.G. H.G.
62.1 99.8 75.1 At2g27420 817287 cysteine proteinase, putative F:cysteine-type peptidase activity, cysteine-type endopeptidase activity;P:proteolysis;C:endomembrane system;MOPBVAF O.I. C.G. H.G.
46.1 99.8 31.9 At3g58070 824976 GIS (GLABROUS INFLORESCENCE STEMS) Putative transcription factor, contains C2H2 domain, regulates aspects of shoot maturation in Arabidopsis thaliana. GIS loss-of-function mutations affect the epidermal differentiation of inflorescence organs, causing a premature decrease in trichome production on successive leaves, stem internodes, and branches. Overexpression has the opposite effect on trichome initiation and causes other heterochronic phenotypes, affecting flowering and juvenile–adult leaf transition and inducing the formation of rosette leaves on inflorescence stems. O.I. C.G. H.G.
29.3 99.7 250.3 At2g40100 818599 LHCB4.3 (light harvesting complex PSII) Lhcb4:3 protein (Lhcb4.3, light harvesting complex of photosystem II O.I. C.G. H.G.
27.1 99.7 24.3 At1g65870 842898 disease resistance-responsive family protein F:molecular_function unknown;P:lignan biosynthetic process, defense response;C:cell wall;P O.I. C.G. H.G.
26.2 99.7 46.6 At5g58310 835943 MES18 (METHYL ESTERASE 18) Encodes a protein shown to have methyl IAA esterase activity in vitro. This protein does not act on methyl JA, MeSA, MeGA4, or MEGA9 in vitro. O.I. C.G. H.G.
26.2 99.7 22.4 At1g52770 841710 phototropic-responsive NPH3 family protein F:signal transducer activity;P:response to light stimulus;C:cellular_component unknown;P O.I. C.G. H.G.
24.7 99.6 145.6 At1g02820 839304 late embryogenesis abundant 3 family protein / LEA3 family protein F:molecular_function unknown;P:embryonic development, response to stress;C:unknown;P O.I. C.G. H.G.
24.7 99.6 120.4 At1g64780 842786 ATAMT1 encodes an ammonium transporter protein believed to act as a high affinity transporter. It is expressed in the root, primarily in endodermal and cortical cells, and contributes to ammonium uptake in the root. O.I. C.G. H.G.
24.6 99.6 128.9 At4g01080 827902 unknown protein F:unknown;P:biological_process unknown;C:cellular_component unknown;PF O.I. C.G. H.G.
24.2 99.6 112.3 At3g48460 824005 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:glycerol biosynthetic process, lipid metabolic process;C:endomembrane system;PBOFM O.I. C.G. H.G.
22.4 99.6 58.5 At1g60590 842353 polygalacturonase, putative / pectinase, putative F:polygalacturonase activity;P:carbohydrate metabolic process;C:unknown;FPBMOVA O.I. C.G. H.G.
21.4 99.6 67.0 At3g52720 824438 ACA1 (ALPHA CARBONIC ANHYDRASE 1) F:carbonate dehydratase activity, zinc ion binding;P:one-carbon compound metabolic process;C:endomembrane system;MBPOF O.I. C.G. H.G.
20.7 99.6 66.3 At2g32530 817814 ATCSLB03 encodes a gene similar to cellulose synthase O.I. C.G. H.G.
19.4 99.6 107.0 At4g10120 826603 ATSPS4F Encodes a protein with putative sucrose-phosphate synthase activity. O.I. C.G. H.G.
17.9 99.5 135.0 At1g72030 843534 GCN5-related N-acetyltransferase (GNAT) family protein F:N-acetyltransferase activity;P:metabolic process;C:unknown;PBO O.I. C.G. H.G.
16.9 99.5 86.9 At2g36145 818187 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast stroma, chloroplast;P O.I. C.G. H.G.
15.0 99.4 13.7 At3g30460 822758 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVB O.I. C.G. H.G.
14.0 99.4 104.1 At3g24190 822005 ABC1 family protein F:protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast;OBMPFAV O.I. C.G. H.G.
13.8 99.4 171.8 At5g66530 836785 aldose 1-epimerase family protein F:carbohydrate binding, isomerase activity, aldose 1-epimerase activity, catalytic activity;P:galactose metabolic process, carbohydrate metabolic process;C:apoplast, chloroplast, chloroplast stroma;BOPFM O.I. C.G. H.G.
13.8 99.4 46.9 At4g31870 829316 ATGPX7 (glutathione peroxidase 7) Encodes glutathione peroxidase. O.I. C.G. H.G.
13.4 99.4 82.2 At1g62780 842577 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast, chloroplast stroma;PMOBAF O.I. C.G. H.G.
13.2 99.4 16.0 At5g40380 834036 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA O.I. C.G. H.G.
12.9 99.3 21.3 At1g60230 842318 radical SAM domain-containing protein F:iron-sulfur cluster binding, catalytic activity, RNA methyltransferase activity;P:rRNA processing;C:cytoplasm;BOPVA O.I. C.G. H.G.
12.8 99.3 169.0 At5g35970 833589 DNA-binding protein, putative F:DNA binding;P:biological_process unknown;C:chloroplast, chloroplast envelope;BMOFPA O.I. C.G. H.G.
12.8 99.3 27.5 At5g10930 830960 CIPK5 (CBL-INTERACTING PROTEIN KINASE 5) Encodes CBL-interacting protein kinase 5 (CIPK5). O.I. C.G. H.G.
12.5 99.3 68.4 At3g59780 825147 - F:molecular_function unknown;P:biological_process unknown;C:nucleus, chloroplast;OBMFPV O.I. C.G. H.G.
12.4 99.3 30.3 At5g20140 832136 SOUL heme-binding family protein F:binding;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast;OBPMA O.I. C.G. H.G.
12.3 99.3 75.3 At1g07180 837229 NDA1 (ALTERNATIVE NAD(P)H DEHYDROGENASE 1) Internal NAD(P)H dehydrogenase in mitochondria. The predicted protein sequence has high homology with other designated NAD(P)H DHs from microorganisms; the capacity for matrix NAD(P)H oxidation via the rotenone-insensitive pathway is significantly reduced in the Atndi1 mutant plant line; the in vitro translation product of AtNDI1 is imported into isolated mitochondria and located on the inside of the inner membrane. O.I. C.G. H.G.
12.2 99.3 93.3 At1g04420 839524 aldo/keto reductase family protein F:oxidoreductase activity, aldo-keto reductase activity;P:oxidation reduction;C:chloroplast, chloroplast stroma, chloroplast envelope;BOMFPA O.I. C.G. H.G.
12.1 99.3 206.5 At1g17100 838280 SOUL heme-binding family protein F:binding;P:biological_process unknown;C:plasma membrane, vacuole;OMPBA O.I. C.G. H.G.
11.9 99.3 86.6 At3g01060 821278 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;BOFP O.I. C.G. H.G.
11.6 99.3 109.2 At2g04039 814937 unknown protein F:molecular_function unknown;P:unknown;C:chloroplast;BOP O.I. C.G. H.G.
11.3 99.3 26.2 At2g41120 818711 unknown protein F:unknown;P:biological_process unknown;C:chloroplast;BOP O.I. C.G. H.G.
11.2 99.2 39.2 At4g24700 828572 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
10.9 99.2 133.0 At1g32900 840184 starch synthase, putative F:transferase activity, transferring glycosyl groups;P:biosynthetic process, glucan biosynthetic process;C:chloroplast;PBOAFM O.I. C.G. H.G.
10.7 99.2 49.1 At4g37310 829886 CYP81H1 member of CYP81H O.I. C.G. H.G.
10.6 99.2 61.1 At3g27050 822323 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
10.5 99.2 18.9 At1g60270 3767579 - F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
10.2 99.2 51.4 At1g17050 838275 SPS2 (Solanesyl diphosphate synthase 2) Encodes a protein with solanesyl diphosphate synthase activity. O.I. C.G. H.G.
10.1 99.2 39.7 At4g29590 829080 methyltransferase F:methyltransferase activity;P:metabolic process;C:chloroplast;BOPAF O.I. C.G. H.G.
10.1 99.2 34.4 At1g78510 844187 SPS1 (solanesyl diphosphate synthase 1) Encodes a protein with solanesyl diphosphate synthase activity. O.I. C.G. H.G.
10.0 99.2 54.1 At1g70580 843395 AOAT2 (ALANINE-2-OXOGLUTARATE AMINOTRANSFERASE 2) Similar to glutamate-glyoxylate transaminase enzyme encoded by AOAT1 O.I. C.G. H.G.
9.8 99.1 144.7 At5g51720 835246 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast stroma, chloroplast;MPO O.I. C.G. H.G.
9.8 99.1 33.1 At5g54250 835513 ATCNGC4 (CYCLIC NUCLEOTIDE-GATED CATION CHANNEL 4) member of Cyclic nucleotide gated channel family, downstream component of the signaling pathways leading to HR resistance. mutant plants exhibit gene-for-gene disease resistance against avirulent Pseudomonas syringae despite the near-complete absence of the hypersensitive response (HR). Salicylic acid accumulation in dnd2 mutants is completely PAD4-independent. O.I. C.G. H.G.
9.8 99.1 28.6 At5g56850 835787 unknown protein F:unknown;P:unknown;C:unknown;OMBFPAV O.I. C.G. H.G.
9.7 99.1 41.3 At2g40400 818633 unknown protein F:unknown;P:unknown;C:chloroplast thylakoid lumen;PBOM O.I. C.G. H.G.
9.5 99.1 165.6 At5g64840 836607 ATGCN5 (A. THALIANA GENERAL CONTROL NON-REPRESSIBLE 5) member of GCN subfamily O.I. C.G. H.G.
9.4 99.1 30.6 At5g64050 836526 ERS (GLUTAMATE TRNA SYNTHETASE) Glutamate-tRNA ligase. Targeted to mitochondria and chloroplast. Its inactivation causes developmental arrest of chloroplasts and mitochondria in Nicotiana benthamiana. O.I. C.G. H.G.
9.1 99.1 220.4 At4g26850 828792 VTC2 (vitamin c defective 2) Encodes a novel protein involved in ascorbate biosynthesis, which was shown to catalyze the transfer of GMP from GDP-galactose to a variety of hexose-1-phosphate acceptors. Recessive mutation has a reduced amount of vitamin C, lower level of non-photochemical quenching, and reduced rate of conversion of violaxanthin to zeaxanthin in high light. O.I. C.G. H.G.
9.0 99.1 139.2 At1g43560 840939 Aty2 (Arabidopsis thioredoxin y2) F:electron carrier activity, protein disulfide oxidoreductase activity;P:glycerol ether metabolic process, cell redox homeostasis;C:chloroplast stroma, chloroplast;BOMPFAV O.I. C.G. H.G.
9.0 99.1 60.4 At5g42070 834212 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast;PO O.I. C.G. H.G.
8.9 99.0 122.3 At3g56290 824796 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
8.9 99.0 41.4 At5g57170 835823 macrophage migration inhibitory factor family protein / MIF family protein F:unknown;P:inflammatory response, response to other organism;C:chloroplast;MOBPF O.I. C.G. H.G.
8.9 99.0 39.9 At1g50730 841495 unknown protein F:unknown;P:unknown;C:unknown;MOPF O.I. C.G. H.G.
8.8 99.0 48.3 At3g15110 820741 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane;BPO O.I. C.G. H.G.
8.8 99.0 38.0 At4g04350 825755 EMB2369 (EMBRYO DEFECTIVE 2369) F:aminoacyl-tRNA ligase activity, nucleotide binding, leucine-tRNA ligase activity, ATP binding;P:embryonic development ending in seed dormancy, tRNA aminoacylation for protein translation;C:mitochondrion, chloroplast;OBAMFPV O.I. C.G. H.G.
8.7 99.0 98.2 At5g58870 836004 ftsh9 (FtsH protease 9) encodes an FtsH protease that is localized to the chloroplast O.I. C.G. H.G.
8.7 99.0 68.7 At4g11175 826719 translation initiation factor IF-1, chloroplast, putative F:RNA binding, translation initiation factor activity;P:translational initiation;C:chloroplast;BOP O.I. C.G. H.G.
8.7 99.0 45.4 At3g01550 821114 PPT2 (PHOSPHOENOLPYRUVATE (PEP)/PHOSPHATE TRANSLOCATOR 2) F:antiporter activity, triose-phosphate transmembrane transporter activity;P:triose phosphate transport, transport;C:integral to membrane, chloroplast, membrane;PMFOBA O.I. C.G. H.G.
8.6 99.0 86.9 At2g30390 817589 FC2 (FERROCHELATASE 2) Encodes one of two ferrochelatase genes in Arabidopsis. Ferrochelatase is the terminal enzyme of heme biosynthesis. FC-II is speculated to operate in photosynthetic cytochromes O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
65.8	99.8	51.4	At5g55570	835651	unknown protein	F:unknown;P:unknown;C:chloroplast;PM	O.I.	C.G.	H.G.
62.1	99.8	75.1	At2g27420	817287	cysteine proteinase, putative	F:cysteine-type peptidase activity, cysteine-type endopeptidase activity;P:proteolysis;C:endomembrane system;MOPBVAF	O.I.	C.G.	H.G.
46.1	99.8	31.9	At3g58070	824976	GIS (GLABROUS INFLORESCENCE STEMS)	Putative transcription factor, contains C2H2 domain, regulates aspects of shoot maturation in Arabidopsis thaliana. GIS loss-of-function mutations affect the epidermal differentiation of inflorescence organs, causing a premature decrease in trichome production on successive leaves, stem internodes, and branches. Overexpression has the opposite effect on trichome initiation and causes other heterochronic phenotypes, affecting flowering and juvenile–adult leaf transition and inducing the formation of rosette leaves on inflorescence stems.	O.I.	C.G.	H.G.
29.3	99.7	250.3	At2g40100	818599	LHCB4.3 (light harvesting complex PSII)	Lhcb4:3 protein (Lhcb4.3, light harvesting complex of photosystem II	O.I.	C.G.	H.G.
27.1	99.7	24.3	At1g65870	842898	disease resistance-responsive family protein	F:molecular_function unknown;P:lignan biosynthetic process, defense response;C:cell wall;P	O.I.	C.G.	H.G.
26.2	99.7	46.6	At5g58310	835943	MES18 (METHYL ESTERASE 18)	Encodes a protein shown to have methyl IAA esterase activity in vitro. This protein does not act on methyl JA, MeSA, MeGA4, or MEGA9 in vitro.	O.I.	C.G.	H.G.
26.2	99.7	22.4	At1g52770	841710	phototropic-responsive NPH3 family protein	F:signal transducer activity;P:response to light stimulus;C:cellular_component unknown;P	O.I.	C.G.	H.G.
24.7	99.6	145.6	At1g02820	839304	late embryogenesis abundant 3 family protein / LEA3 family protein	F:molecular_function unknown;P:embryonic development, response to stress;C:unknown;P	O.I.	C.G.	H.G.
24.7	99.6	120.4	At1g64780	842786	ATAMT1	encodes an ammonium transporter protein believed to act as a high affinity transporter. It is expressed in the root, primarily in endodermal and cortical cells, and contributes to ammonium uptake in the root.	O.I.	C.G.	H.G.
24.6	99.6	128.9	At4g01080	827902	unknown protein	F:unknown;P:biological_process unknown;C:cellular_component unknown;PF	O.I.	C.G.	H.G.
24.2	99.6	112.3	At3g48460	824005	GDSL-motif lipase/hydrolase family protein	F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:glycerol biosynthetic process, lipid metabolic process;C:endomembrane system;PBOFM	O.I.	C.G.	H.G.
22.4	99.6	58.5	At1g60590	842353	polygalacturonase, putative / pectinase, putative	F:polygalacturonase activity;P:carbohydrate metabolic process;C:unknown;FPBMOVA	O.I.	C.G.	H.G.
21.4	99.6	67.0	At3g52720	824438	ACA1 (ALPHA CARBONIC ANHYDRASE 1)	F:carbonate dehydratase activity, zinc ion binding;P:one-carbon compound metabolic process;C:endomembrane system;MBPOF	O.I.	C.G.	H.G.
20.7	99.6	66.3	At2g32530	817814	ATCSLB03	encodes a gene similar to cellulose synthase	O.I.	C.G.	H.G.
19.4	99.6	107.0	At4g10120	826603	ATSPS4F	Encodes a protein with putative sucrose-phosphate synthase activity.	O.I.	C.G.	H.G.
17.9	99.5	135.0	At1g72030	843534	GCN5-related N-acetyltransferase (GNAT) family protein	F:N-acetyltransferase activity;P:metabolic process;C:unknown;PBO	O.I.	C.G.	H.G.
16.9	99.5	86.9	At2g36145	818187	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast stroma, chloroplast;P	O.I.	C.G.	H.G.
15.0	99.4	13.7	At3g30460	822758	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVB	O.I.	C.G.	H.G.
14.0	99.4	104.1	At3g24190	822005	ABC1 family protein	F:protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast;OBMPFAV	O.I.	C.G.	H.G.
13.8	99.4	171.8	At5g66530	836785	aldose 1-epimerase family protein	F:carbohydrate binding, isomerase activity, aldose 1-epimerase activity, catalytic activity;P:galactose metabolic process, carbohydrate metabolic process;C:apoplast, chloroplast, chloroplast stroma;BOPFM	O.I.	C.G.	H.G.
13.8	99.4	46.9	At4g31870	829316	ATGPX7 (glutathione peroxidase 7)	Encodes glutathione peroxidase.	O.I.	C.G.	H.G.
13.4	99.4	82.2	At1g62780	842577	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast, chloroplast stroma;PMOBAF	O.I.	C.G.	H.G.
13.2	99.4	16.0	At5g40380	834036	protein kinase family protein	F:kinase activity;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA	O.I.	C.G.	H.G.
12.9	99.3	21.3	At1g60230	842318	radical SAM domain-containing protein	F:iron-sulfur cluster binding, catalytic activity, RNA methyltransferase activity;P:rRNA processing;C:cytoplasm;BOPVA	O.I.	C.G.	H.G.
12.8	99.3	169.0	At5g35970	833589	DNA-binding protein, putative	F:DNA binding;P:biological_process unknown;C:chloroplast, chloroplast envelope;BMOFPA	O.I.	C.G.	H.G.
12.8	99.3	27.5	At5g10930	830960	CIPK5 (CBL-INTERACTING PROTEIN KINASE 5)	Encodes CBL-interacting protein kinase 5 (CIPK5).	O.I.	C.G.	H.G.
12.5	99.3	68.4	At3g59780	825147	-	F:molecular_function unknown;P:biological_process unknown;C:nucleus, chloroplast;OBMFPV	O.I.	C.G.	H.G.
12.4	99.3	30.3	At5g20140	832136	SOUL heme-binding family protein	F:binding;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast;OBPMA	O.I.	C.G.	H.G.
12.3	99.3	75.3	At1g07180	837229	NDA1 (ALTERNATIVE NAD(P)H DEHYDROGENASE 1)	Internal NAD(P)H dehydrogenase in mitochondria. The predicted protein sequence has high homology with other designated NAD(P)H DHs from microorganisms; the capacity for matrix NAD(P)H oxidation via the rotenone-insensitive pathway is significantly reduced in the Atndi1 mutant plant line; the in vitro translation product of AtNDI1 is imported into isolated mitochondria and located on the inside of the inner membrane.	O.I.	C.G.	H.G.
12.2	99.3	93.3	At1g04420	839524	aldo/keto reductase family protein	F:oxidoreductase activity, aldo-keto reductase activity;P:oxidation reduction;C:chloroplast, chloroplast stroma, chloroplast envelope;BOMFPA	O.I.	C.G.	H.G.
12.1	99.3	206.5	At1g17100	838280	SOUL heme-binding family protein	F:binding;P:biological_process unknown;C:plasma membrane, vacuole;OMPBA	O.I.	C.G.	H.G.
11.9	99.3	86.6	At3g01060	821278	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;BOFP	O.I.	C.G.	H.G.
11.6	99.3	109.2	At2g04039	814937	unknown protein	F:molecular_function unknown;P:unknown;C:chloroplast;BOP	O.I.	C.G.	H.G.
11.3	99.3	26.2	At2g41120	818711	unknown protein	F:unknown;P:biological_process unknown;C:chloroplast;BOP	O.I.	C.G.	H.G.
11.2	99.2	39.2	At4g24700	828572	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
10.9	99.2	133.0	At1g32900	840184	starch synthase, putative	F:transferase activity, transferring glycosyl groups;P:biosynthetic process, glucan biosynthetic process;C:chloroplast;PBOAFM	O.I.	C.G.	H.G.
10.7	99.2	49.1	At4g37310	829886	CYP81H1	member of CYP81H	O.I.	C.G.	H.G.
10.6	99.2	61.1	At3g27050	822323	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
10.5	99.2	18.9	At1g60270	3767579	-	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
10.2	99.2	51.4	At1g17050	838275	SPS2 (Solanesyl diphosphate synthase 2)	Encodes a protein with solanesyl diphosphate synthase activity.	O.I.	C.G.	H.G.
10.1	99.2	39.7	At4g29590	829080	methyltransferase	F:methyltransferase activity;P:metabolic process;C:chloroplast;BOPAF	O.I.	C.G.	H.G.
10.1	99.2	34.4	At1g78510	844187	SPS1 (solanesyl diphosphate synthase 1)	Encodes a protein with solanesyl diphosphate synthase activity.	O.I.	C.G.	H.G.
10.0	99.2	54.1	At1g70580	843395	AOAT2 (ALANINE-2-OXOGLUTARATE AMINOTRANSFERASE 2)	Similar to glutamate-glyoxylate transaminase enzyme encoded by AOAT1	O.I.	C.G.	H.G.
9.8	99.1	144.7	At5g51720	835246	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast stroma, chloroplast;MPO	O.I.	C.G.	H.G.
9.8	99.1	33.1	At5g54250	835513	ATCNGC4 (CYCLIC NUCLEOTIDE-GATED CATION CHANNEL 4)	member of Cyclic nucleotide gated channel family, downstream component of the signaling pathways leading to HR resistance. mutant plants exhibit gene-for-gene disease resistance against avirulent Pseudomonas syringae despite the near-complete absence of the hypersensitive response (HR). Salicylic acid accumulation in dnd2 mutants is completely PAD4-independent.	O.I.	C.G.	H.G.
9.8	99.1	28.6	At5g56850	835787	unknown protein	F:unknown;P:unknown;C:unknown;OMBFPAV	O.I.	C.G.	H.G.
9.7	99.1	41.3	At2g40400	818633	unknown protein	F:unknown;P:unknown;C:chloroplast thylakoid lumen;PBOM	O.I.	C.G.	H.G.
9.5	99.1	165.6	At5g64840	836607	ATGCN5 (A. THALIANA GENERAL CONTROL NON-REPRESSIBLE 5)	member of GCN subfamily	O.I.	C.G.	H.G.
9.4	99.1	30.6	At5g64050	836526	ERS (GLUTAMATE TRNA SYNTHETASE)	Glutamate-tRNA ligase. Targeted to mitochondria and chloroplast. Its inactivation causes developmental arrest of chloroplasts and mitochondria in Nicotiana benthamiana.	O.I.	C.G.	H.G.
9.1	99.1	220.4	At4g26850	828792	VTC2 (vitamin c defective 2)	Encodes a novel protein involved in ascorbate biosynthesis, which was shown to catalyze the transfer of GMP from GDP-galactose to a variety of hexose-1-phosphate acceptors. Recessive mutation has a reduced amount of vitamin C, lower level of non-photochemical quenching, and reduced rate of conversion of violaxanthin to zeaxanthin in high light.	O.I.	C.G.	H.G.
9.0	99.1	139.2	At1g43560	840939	Aty2 (Arabidopsis thioredoxin y2)	F:electron carrier activity, protein disulfide oxidoreductase activity;P:glycerol ether metabolic process, cell redox homeostasis;C:chloroplast stroma, chloroplast;BOMPFAV	O.I.	C.G.	H.G.
9.0	99.1	60.4	At5g42070	834212	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast;PO	O.I.	C.G.	H.G.
8.9	99.0	122.3	At3g56290	824796	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
8.9	99.0	41.4	At5g57170	835823	macrophage migration inhibitory factor family protein / MIF family protein	F:unknown;P:inflammatory response, response to other organism;C:chloroplast;MOBPF	O.I.	C.G.	H.G.
8.9	99.0	39.9	At1g50730	841495	unknown protein	F:unknown;P:unknown;C:unknown;MOPF	O.I.	C.G.	H.G.
8.8	99.0	48.3	At3g15110	820741	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane;BPO	O.I.	C.G.	H.G.
8.8	99.0	38.0	At4g04350	825755	EMB2369 (EMBRYO DEFECTIVE 2369)	F:aminoacyl-tRNA ligase activity, nucleotide binding, leucine-tRNA ligase activity, ATP binding;P:embryonic development ending in seed dormancy, tRNA aminoacylation for protein translation;C:mitochondrion, chloroplast;OBAMFPV	O.I.	C.G.	H.G.
8.7	99.0	98.2	At5g58870	836004	ftsh9 (FtsH protease 9)	encodes an FtsH protease that is localized to the chloroplast	O.I.	C.G.	H.G.
8.7	99.0	68.7	At4g11175	826719	translation initiation factor IF-1, chloroplast, putative	F:RNA binding, translation initiation factor activity;P:translational initiation;C:chloroplast;BOP	O.I.	C.G.	H.G.
8.7	99.0	45.4	At3g01550	821114	PPT2 (PHOSPHOENOLPYRUVATE (PEP)/PHOSPHATE TRANSLOCATOR 2)	F:antiporter activity, triose-phosphate transmembrane transporter activity;P:triose phosphate transport, transport;C:integral to membrane, chloroplast, membrane;PMFOBA	O.I.	C.G.	H.G.
8.6	99.0	86.9	At2g30390	817589	FC2 (FERROCHELATASE 2)	Encodes one of two ferrochelatase genes in Arabidopsis. Ferrochelatase is the terminal enzyme of heme biosynthesis. FC-II is speculated to operate in photosynthetic cytochromes	O.I.	C.G.	H.G.

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GSM ID	GSM133833
Assay name	Walters_A-12-Kruger-MH3_REP3
GSE experiment	GSE5737: Carbohydrate- and redox-regulation of gene expression in a TPT mutant

Microarray experiments to specifically-expressed genes

GSM ID GSM133833 Assay name Walters_A-12-Kruger-MH3_REP3 GSE experiment GSE5737: Carbohydrate- and redox-regulation of gene expression in a TPT mutant

GSM ID GSM133833

Assay name Walters_A-12-Kruger-MH3_REP3

GSE experiment GSE5737: Carbohydrate- and redox-regulation of gene expression in a TPT mutant