Microarray experiments to specifically-expressed genes

GSM ID GSM133833
Assay name Walters_A-12-Kruger-MH3_REP3
GSE experiment GSE5737: Carbohydrate- and redox-regulation of gene expression in a TPT mutant

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
65.899.851.4At5g55570835651unknown proteinF:unknown;P:unknown;C:chloroplast;PMO.I.C.G.H.G.
62.199.875.1At2g27420817287cysteine proteinase, putativeF:cysteine-type peptidase activity, cysteine-type endopeptidase activity;P:proteolysis;C:endomembrane system;MOPBVAFO.I.C.G.H.G.
46.199.831.9At3g58070824976GIS (GLABROUS INFLORESCENCE STEMS)Putative transcription factor, contains C2H2 domain, regulates aspects of shoot maturation in Arabidopsis thaliana. GIS loss-of-function mutations affect the epidermal differentiation of inflorescence organs, causing a premature decrease in trichome production on successive leaves, stem internodes, and branches. Overexpression has the opposite effect on trichome initiation and causes other heterochronic phenotypes, affecting flowering and juvenileľadult leaf transition and inducing the formation of rosette leaves on inflorescence stems.O.I.C.G.H.G.
29.399.7250.3At2g40100818599LHCB4.3 (light harvesting complex PSII)Lhcb4:3 protein (Lhcb4.3, light harvesting complex of photosystem IIO.I.C.G.H.G.
27.199.724.3At1g65870842898disease resistance-responsive family proteinF:molecular_function unknown;P:lignan biosynthetic process, defense response;C:cell wall;PO.I.C.G.H.G.
26.299.746.6At5g58310835943MES18 (METHYL ESTERASE 18)Encodes a protein shown to have methyl IAA esterase activity in vitro. This protein does not act on methyl JA, MeSA, MeGA4, or MEGA9 in vitro.O.I.C.G.H.G.
26.299.722.4At1g52770841710phototropic-responsive NPH3 family proteinF:signal transducer activity;P:response to light stimulus;C:cellular_component unknown;PO.I.C.G.H.G.
24.799.6145.6At1g02820839304late embryogenesis abundant 3 family protein / LEA3 family proteinF:molecular_function unknown;P:embryonic development, response to stress;C:unknown;PO.I.C.G.H.G.
24.799.6120.4At1g64780842786ATAMT1encodes an ammonium transporter protein believed to act as a high affinity transporter. It is expressed in the root, primarily in endodermal and cortical cells, and contributes to ammonium uptake in the root.O.I.C.G.H.G.
24.699.6128.9At4g01080827902unknown proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;PFO.I.C.G.H.G.
24.299.6112.3At3g48460824005GDSL-motif lipase/hydrolase family proteinF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:glycerol biosynthetic process, lipid metabolic process;C:endomembrane system;PBOFMO.I.C.G.H.G.
22.499.658.5At1g60590842353polygalacturonase, putative / pectinase, putativeF:polygalacturonase activity;P:carbohydrate metabolic process;C:unknown;FPBMOVAO.I.C.G.H.G.
21.499.667.0At3g52720824438ACA1 (ALPHA CARBONIC ANHYDRASE 1)F:carbonate dehydratase activity, zinc ion binding;P:one-carbon compound metabolic process;C:endomembrane system;MBPOFO.I.C.G.H.G.
20.799.666.3At2g32530817814ATCSLB03encodes a gene similar to cellulose synthaseO.I.C.G.H.G.
19.499.6107.0At4g10120826603ATSPS4FEncodes a protein with putative sucrose-phosphate synthase activity.O.I.C.G.H.G.
17.999.5135.0At1g72030843534GCN5-related N-acetyltransferase (GNAT) family proteinF:N-acetyltransferase activity;P:metabolic process;C:unknown;PBOO.I.C.G.H.G.
16.999.586.9At2g36145818187unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast stroma, chloroplast;PO.I.C.G.H.G.
15.099.413.7At3g30460822758zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVBO.I.C.G.H.G.
14.099.4104.1At3g24190822005ABC1 family proteinF:protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast;OBMPFAVO.I.C.G.H.G.
13.899.4171.8At5g66530836785aldose 1-epimerase family proteinF:carbohydrate binding, isomerase activity, aldose 1-epimerase activity, catalytic activity;P:galactose metabolic process, carbohydrate metabolic process;C:apoplast, chloroplast, chloroplast stroma;BOPFMO.I.C.G.H.G.
13.899.446.9At4g31870829316ATGPX7 (glutathione peroxidase 7)Encodes glutathione peroxidase.O.I.C.G.H.G.
13.499.482.2At1g62780842577unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast, chloroplast stroma;PMOBAFO.I.C.G.H.G.
13.299.416.0At5g40380834036protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVAO.I.C.G.H.G.
12.999.321.3At1g60230842318radical SAM domain-containing proteinF:iron-sulfur cluster binding, catalytic activity, RNA methyltransferase activity;P:rRNA processing;C:cytoplasm;BOPVAO.I.C.G.H.G.
12.899.3169.0At5g35970833589DNA-binding protein, putativeF:DNA binding;P:biological_process unknown;C:chloroplast, chloroplast envelope;BMOFPAO.I.C.G.H.G.
12.899.327.5At5g10930830960CIPK5 (CBL-INTERACTING PROTEIN KINASE 5)Encodes CBL-interacting protein kinase 5 (CIPK5).O.I.C.G.H.G.
12.599.368.4At3g59780825147-F:molecular_function unknown;P:biological_process unknown;C:nucleus, chloroplast;OBMFPVO.I.C.G.H.G.
12.499.330.3At5g20140832136SOUL heme-binding family proteinF:binding;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast;OBPMAO.I.C.G.H.G.
12.399.375.3At1g07180837229NDA1 (ALTERNATIVE NAD(P)H DEHYDROGENASE 1)Internal NAD(P)H dehydrogenase in mitochondria. The predicted protein sequence has high homology with other designated NAD(P)H DHs from microorganisms; the capacity for matrix NAD(P)H oxidation via the rotenone-insensitive pathway is significantly reduced in the Atndi1 mutant plant line; the in vitro translation product of AtNDI1 is imported into isolated mitochondria and located on the inside of the inner membrane.O.I.C.G.H.G.
12.299.393.3At1g04420839524aldo/keto reductase family proteinF:oxidoreductase activity, aldo-keto reductase activity;P:oxidation reduction;C:chloroplast, chloroplast stroma, chloroplast envelope;BOMFPAO.I.C.G.H.G.
12.199.3206.5At1g17100838280SOUL heme-binding family proteinF:binding;P:biological_process unknown;C:plasma membrane, vacuole;OMPBAO.I.C.G.H.G.
11.999.386.6At3g01060821278unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;BOFPO.I.C.G.H.G.
11.699.3109.2At2g04039814937unknown proteinF:molecular_function unknown;P:unknown;C:chloroplast;BOPO.I.C.G.H.G.
11.399.326.2At2g41120818711unknown proteinF:unknown;P:biological_process unknown;C:chloroplast;BOPO.I.C.G.H.G.
11.299.239.2At4g24700828572unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
10.999.2133.0At1g32900840184starch synthase, putativeF:transferase activity, transferring glycosyl groups;P:biosynthetic process, glucan biosynthetic process;C:chloroplast;PBOAFMO.I.C.G.H.G.
10.799.249.1At4g37310829886CYP81H1member of CYP81HO.I.C.G.H.G.
10.699.261.1At3g27050822323unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.C.G.H.G.
10.599.218.9At1g602703767579-F:unknown;P:unknown;C:unknownO.I.C.G.H.G.
10.299.251.4At1g17050838275SPS2 (Solanesyl diphosphate synthase 2)Encodes a protein with solanesyl diphosphate synthase activity.O.I.C.G.H.G.
10.199.239.7At4g29590829080methyltransferaseF:methyltransferase activity;P:metabolic process;C:chloroplast;BOPAFO.I.C.G.H.G.
10.199.234.4At1g78510844187SPS1 (solanesyl diphosphate synthase 1)Encodes a protein with solanesyl diphosphate synthase activity.O.I.C.G.H.G.
10.099.254.1At1g70580843395AOAT2 (ALANINE-2-OXOGLUTARATE AMINOTRANSFERASE 2)Similar to glutamate-glyoxylate transaminase enzyme encoded by AOAT1O.I.C.G.H.G.
9.899.1144.7At5g51720835246unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast stroma, chloroplast;MPOO.I.C.G.H.G.
9.899.133.1At5g54250835513ATCNGC4 (CYCLIC NUCLEOTIDE-GATED CATION CHANNEL 4)member of Cyclic nucleotide gated channel family, downstream component of the signaling pathways leading to HR resistance. mutant plants exhibit gene-for-gene disease resistance against avirulent Pseudomonas syringae despite the near-complete absence of the hypersensitive response (HR). Salicylic acid accumulation in dnd2 mutants is completely PAD4-independent.O.I.C.G.H.G.
9.899.128.6At5g56850835787unknown proteinF:unknown;P:unknown;C:unknown;OMBFPAVO.I.C.G.H.G.
9.799.141.3At2g40400818633unknown proteinF:unknown;P:unknown;C:chloroplast thylakoid lumen;PBOMO.I.C.G.H.G.
9.599.1165.6At5g64840836607ATGCN5 (A. THALIANA GENERAL CONTROL NON-REPRESSIBLE 5)member of GCN subfamilyO.I.C.G.H.G.
9.499.130.6At5g64050836526ERS (GLUTAMATE TRNA SYNTHETASE)Glutamate-tRNA ligase. Targeted to mitochondria and chloroplast. Its inactivation causes developmental arrest of chloroplasts and mitochondria in Nicotiana benthamiana.O.I.C.G.H.G.
9.199.1220.4At4g26850828792VTC2 (vitamin c defective 2)Encodes a novel protein involved in ascorbate biosynthesis, which was shown to catalyze the transfer of GMP from GDP-galactose to a variety of hexose-1-phosphate acceptors. Recessive mutation has a reduced amount of vitamin C, lower level of non-photochemical quenching, and reduced rate of conversion of violaxanthin to zeaxanthin in high light.O.I.C.G.H.G.
9.099.1139.2At1g43560840939Aty2 (Arabidopsis thioredoxin y2)F:electron carrier activity, protein disulfide oxidoreductase activity;P:glycerol ether metabolic process, cell redox homeostasis;C:chloroplast stroma, chloroplast;BOMPFAVO.I.C.G.H.G.
9.099.160.4At5g42070834212unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast;POO.I.C.G.H.G.
8.999.0122.3At3g56290824796unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
8.999.041.4At5g57170835823macrophage migration inhibitory factor family protein / MIF family proteinF:unknown;P:inflammatory response, response to other organism;C:chloroplast;MOBPFO.I.C.G.H.G.
8.999.039.9At1g50730841495unknown proteinF:unknown;P:unknown;C:unknown;MOPFO.I.C.G.H.G.
8.899.048.3At3g15110820741unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane;BPOO.I.C.G.H.G.
8.899.038.0At4g04350825755EMB2369 (EMBRYO DEFECTIVE 2369)F:aminoacyl-tRNA ligase activity, nucleotide binding, leucine-tRNA ligase activity, ATP binding;P:embryonic development ending in seed dormancy, tRNA aminoacylation for protein translation;C:mitochondrion, chloroplast;OBAMFPVO.I.C.G.H.G.
8.799.098.2At5g58870836004ftsh9 (FtsH protease 9)encodes an FtsH protease that is localized to the chloroplastO.I.C.G.H.G.
8.799.068.7At4g11175826719translation initiation factor IF-1, chloroplast, putativeF:RNA binding, translation initiation factor activity;P:translational initiation;C:chloroplast;BOPO.I.C.G.H.G.
8.799.045.4At3g01550821114PPT2 (PHOSPHOENOLPYRUVATE (PEP)/PHOSPHATE TRANSLOCATOR 2)F:antiporter activity, triose-phosphate transmembrane transporter activity;P:triose phosphate transport, transport;C:integral to membrane, chloroplast, membrane;PMFOBAO.I.C.G.H.G.
8.699.086.9At2g30390817589FC2 (FERROCHELATASE 2)Encodes one of two ferrochelatase genes in Arabidopsis. Ferrochelatase is the terminal enzyme of heme biosynthesis. FC-II is speculated to operate in photosynthetic cytochromesO.I.C.G.H.G.



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